diff --git a/lib/galaxy/managers/tool_source.py b/lib/galaxy/managers/tool_source.py
index 6e9aec1f641..a2872f5dcca 100644
--- a/lib/galaxy/managers/tool_source.py
+++ b/lib/galaxy/managers/tool_source.py
@@ -67,11 +67,19 @@ def get_or_create_tool_source(session: Session, tool) -> ToolSource:
 
 def tool_source_identity_hash(tool: Any) -> str:
     dynamic_tool = getattr(tool, "dynamic_tool", None)
-    identity: tuple[str, ...]
     if dynamic_tool is not None and dynamic_tool.id is not None:
         identity = ("dynamic", str(dynamic_tool.id))
-    else:
-        identity = ("static", tool.id or "", tool.version or "")
+        return hashlib.sha256("\0".join(identity).encode("utf-8")).hexdigest()
+    return static_tool_source_identity_hash(tool.id, tool.version)
+
+
+def static_tool_source_identity_hash(tool_id: str | None, tool_version: str | None) -> str:
+    """Identity hash for a persisted source with no dynamic-tool linkage.
+
+    Shared with ``galaxy.tool_source_store`` writers, which persist
+    config-file tool sources and therefore always carry a static identity.
+    """
+    identity = ("static", tool_id or "", tool_version or "")
     return hashlib.sha256("\0".join(identity).encode("utf-8")).hexdigest()
 
 
diff --git a/lib/galaxy/tool_source_store/database.py b/lib/galaxy/tool_source_store/database.py
index a2402f68bba..9f441eb21b0 100644
--- a/lib/galaxy/tool_source_store/database.py
+++ b/lib/galaxy/tool_source_store/database.py
@@ -22,6 +22,7 @@ from sqlalchemy import (
 )
 from sqlalchemy.orm import Session
 
+from galaxy.managers.tool_source import static_tool_source_identity_hash
 from galaxy.model import (
     ToolIndexCache,
     ToolSource as ToolSourceModel,
@@ -112,6 +113,11 @@ class DatabaseToolSourceStore(ToolSourceStore):
             hash=tool_source.hash,
             source=source_data,
             source_class=tool_source.tool_source_class,
+            tool_id=tool_source.tool_id,
+            tool_version=tool_source.tool_version,
+            # Same "static" identity as galaxy.managers.tool_source.tool_source_identity_hash —
+            # store-backed sources never carry a dynamic tool.
+            identity_hash=static_tool_source_identity_hash(tool_source.tool_id, tool_source.tool_version),
         )
         session.add(model)
         session.flush()