- <% if (page != 1) { %>
-
-
- <% } else { %>
-
-
- <% } %>
- <% if (pages > 5) { %>
- <% if (page != 1) { %>
-
1
- <% if (page != 2) { %>
-
…
- <% } %>
- <% } else { %>
-
1
- <% } %>
- <% _.each(page_slice, function(i) { %>
- <% if (i == page) { %>
-
<%= i %>
- <% } else { %>
-
<%= i %>
- <% } %>
- <% }); %>
- <% var last_pages = [pages - 2, pages - 1, pages]; %>
- <% if (last_pages.indexOf(parseInt(page)) == -1) { %>
-
…
-
<%= pages %>
- <% } %>
- <% } else { %>
- <% for (i = 1; i <= pages; i++) { %>
- <% if (i == page) { %>
-
<%= i %>
- <% } else { %>
-
<%= i %>
- <% } %>
- <% } %>
- <% } %>
- <% if (page < pages) { %>
-
-
- <% } else { %>
-
-
- <% } %>
-
-
-
- " placeholder="Search repositories by name or id" size="60" type="text" />
-
-
- <% if (category.get('repository_count') > 25) { %>
- <%= page_navigation %>
- <% } %>
-
-
-
- <% _.each(category.get("repositories"), function(repository) { %>
-
- | <%= repository.owner %> |
-
-
- |
- <%= repository.description %> |
- <%= repository.type %> |
-
- <% }); %>
-
-
-
- `
- );
- }
-});
-
-export default {
- ShedListView: ShedListView
-};
diff --git a/client/galaxy/scripts/mvc/toolshed/toolshed-model.js b/client/galaxy/scripts/mvc/toolshed/toolshed-model.js
deleted file mode 100644
index d13b742be18..00000000000
--- a/client/galaxy/scripts/mvc/toolshed/toolshed-model.js
+++ /dev/null
@@ -1,106 +0,0 @@
-import _ from "underscore";
-import Backbone from "backbone";
-import { getAppRoot } from "onload/loadConfig";
-
-var ToolShedModel = Backbone.Model.extend({
- defaults: {
- url: "https://toolshed.g2.bx.psu.edu/",
- name: "Galaxy Main Tool Shed"
- },
- urlRoot: `${getAppRoot()}api/tool_shed`
-});
-
-var ToolShedsCollection = Backbone.Collection.extend({
- url: `${getAppRoot()}api/tool_shed`,
- model: ToolShedModel
-});
-
-var ToolShedCategoriesModel = Backbone.Model.extend({
- defaults: [{}],
- urlRoot: `${getAppRoot()}api/tool_shed/contents`
-});
-
-var ToolShedCategoriesCollection = Backbone.Collection.extend({
- url: `${getAppRoot()}api/tool_shed/contents`,
- model: ToolShedCategoriesModel
-});
-
-var ToolShedCategoryModel = Backbone.Model.extend({
- defaults: [{}],
- urlRoot: `${getAppRoot()}api/tool_shed/category`
-});
-
-var ToolShedCategoryCollection = Backbone.Collection.extend({
- url: `${getAppRoot()}api/tool_shed/category`,
- model: ToolShedCategoryModel
-});
-
-var ToolShedRepositoryModel = Backbone.Model.extend({
- defaults: [{}],
- urlRoot: `${getAppRoot()}api/tool_shed/repository`
-});
-
-var ToolShedRepositoryCollection = Backbone.Collection.extend({
- url: `${getAppRoot()}api/tool_shed/repository`,
- model: ToolShedRepositoryModel
-});
-
-var RepoQueueModel = Backbone.Model.extend({
- url: "#"
-});
-
-var RepoQueueCollection = Backbone.Collection.extend({
- url: "#",
- model: RepoQueueModel,
- fetch: function() {
- var repositories = Array();
- var repositories_enc;
- if (window.localStorage.hasOwnProperty("repositories")) {
- repositories_enc = JSON.parse(window.localStorage.repositories);
- } else {
- repositories_enc = [];
- }
- var queue_keys = Object.keys(repositories_enc);
- _.each(queue_keys, key => {
- var repo = repositories_enc[key];
- repo.queue_key = key;
- repositories.push(repo);
- });
- this.reset(repositories);
- return Backbone.Collection.prototype.fetch.call(this);
- }
-});
-
-var RepoStatusModel = Backbone.Model.extend({
- defaults: [{}],
- urlRoot: `${getAppRoot()}api/tool_shed/status`
-});
-
-var RepoStatusCollection = Backbone.Collection.extend({
- url: `${getAppRoot()}api/tool_shed/status`,
- model: RepoStatusModel
-});
-
-var WorkflowToolsModel = Backbone.Model.extend({
- defaults: [{}],
- urlRoot: `${getAppRoot()}api/workflows?missing_tools=True`
-});
-
-var WorkflowToolsCollection = Backbone.Collection.extend({
- url: `${getAppRoot()}api/workflows?missing_tools=True`,
- model: WorkflowToolsModel
-});
-
-export default {
- ShedModel: ToolShedModel,
- ShedsCollection: ToolShedsCollection,
- Category: ToolShedCategoriesModel,
- Categories: ToolShedCategoriesCollection,
- CategoryModel: ToolShedCategoryModel,
- CategoryCollection: ToolShedCategoryCollection,
- RepositoryModel: ToolShedRepositoryModel,
- RepositoryCollection: ToolShedRepositoryCollection,
- RepoQueue: RepoQueueCollection,
- RepoStatus: RepoStatusCollection,
- WorkflowTools: WorkflowToolsCollection
-};
diff --git a/client/galaxy/scripts/mvc/toolshed/util.js b/client/galaxy/scripts/mvc/toolshed/util.js
deleted file mode 100644
index d11abbbf546..00000000000
--- a/client/galaxy/scripts/mvc/toolshed/util.js
+++ /dev/null
@@ -1,65 +0,0 @@
-import $ from "jquery";
-import { getAppRoot } from "onload/loadConfig";
-
-var searchShed = function(request, response) {
- var shed_url = this.shed_url;
- var base_url = `${getAppRoot()}api/tool_shed/search`;
- $.get(base_url, { term: request.term, tool_shed_url: shed_url }, data => {
- var result_list = this.shedParser(data);
- response(result_list);
- });
-};
-
-var shedParser = jsondata => {
- var results = [];
- var hits = jsondata.hits;
- $.each(hits, hit => {
- var record = hits[hit];
- var label = `${record.repository.name} by ${record.repository.repo_owner_username}: ${
- record.repository.description
- }`;
- var result = { value: record.repository.id, label: label };
- results.push(result);
- });
- return results;
-};
-
-var addToQueue = metadata => {
- if (metadata.tool_shed_url.substr(-1) == "/") {
- metadata.tool_shed_url = metadata.tool_shed_url.substr(0, metadata.tool_shed_url.length - 1);
- }
- var key = `${metadata.tool_shed_url}|${metadata.repository_id}|${metadata.changeset_revision}`;
- var queued_repos = {};
- if (window.localStorage.repositories) {
- queued_repos = JSON.parse(window.localStorage.repositories);
- }
- queued_repos[key] = metadata;
- window.localStorage.repositories = JSON.stringify(queued_repos);
-};
-
-var queueLength = () => {
- if (window.localStorage.hasOwnProperty("repositories")) {
- var repo_queue = JSON.parse(window.localStorage.repositories);
- return Object.keys(repo_queue).length;
- } else {
- return 0;
- }
-};
-
-var toolByGuid = function(guid, changeset, tools) {
- var returned_tool;
- tools.forEach(function(tool) {
- if (tool.guid == guid.value) {
- returned_tool = tool;
- }
- });
- return returned_tool;
-};
-
-export default {
- searchShed: searchShed,
- shedParser: shedParser,
- addToQueue: addToQueue,
- queueLength: queueLength,
- toolByGuid: toolByGuid
-};
diff --git a/client/galaxy/scripts/mvc/toolshed/workflows-view.js b/client/galaxy/scripts/mvc/toolshed/workflows-view.js
deleted file mode 100644
index e88192ce711..00000000000
--- a/client/galaxy/scripts/mvc/toolshed/workflows-view.js
+++ /dev/null
@@ -1,133 +0,0 @@
-import _ from "underscore";
-import $ from "jquery";
-import Backbone from "backbone";
-import { getAppRoot } from "onload/loadConfig";
-import _l from "utils/localization";
-import toolshed_model from "mvc/toolshed/toolshed-model";
-import toolshed_util from "mvc/toolshed/util";
-
-var View = Backbone.View.extend({
- el: "#center",
-
- defaults: [{}],
-
- initialize: function(options) {
- this.model = new toolshed_model.WorkflowTools();
- this.listenTo(this.model, "sync", this.render);
- this.model.fetch();
- this.render();
- },
-
- render: function(options) {
- var workflows_missing_tools = this.templateWorkflows();
- var workflows = this.model.models;
- this.$el.html(
- workflows_missing_tools({
- title: _l("Workflows Missing Tools"),
- workflows: workflows,
- queue: toolshed_util.queueLength()
- })
- );
- $("#center").css("overflow", "auto");
- this.bindEvents();
- },
-
- bindEvents: function() {
- var repository_id;
- $(".show_wf_repo").on("click", ev => {
- var tool_ids = $(ev.target).attr("data-toolids");
- var toolshed = $(ev.target).attr("data-shed");
- var api_url = `${getAppRoot()}api/tool_shed/repository`;
- var params = { tool_ids: tool_ids };
- $.get(api_url, params, data => {
- repository_id = data.repository.id;
- var new_route = `repository/s/${toolshed.replace(/:/g, "%3a").replace(/\//g, "%2f")}/r/${
- data.repository.id
- }`;
- Backbone.history.navigate(new_route, {
- trigger: true,
- replace: true
- });
- });
- });
- $(".queue_wf_repo").on("click", ev => {
- var elem = $(ev.target);
- var tool_ids = elem.attr("data-toolids");
- var toolshed = elem.attr("data-shed");
- var api_url = `${getAppRoot()}api/tool_shed/repository`;
- var params = { tool_ids: tool_ids };
- $.get(api_url, params, data => {
- repository_id = data.repository.id;
- params = {
- tool_shed_url: toolshed,
- repository_id: repository_id
- };
- $.get(api_url, params, data => {
- var changesets = Object.keys(data.repository.metadata);
- var current_changeset = changesets[0];
- var current_metadata = data.repository.metadata[current_changeset];
- current_metadata.tool_shed_url = toolshed;
- toolshed_util.addToQueue(current_metadata);
- elem.remove();
- });
- });
- });
- $("#from_workflow").on("click", this.loadWorkflows);
- },
-
- templateWorkflows: function() {
- _.template(
- `
-
-