From 4760a0ac0f48b106f9a1cee348deeccc223eb64a Mon Sep 17 00:00:00 2001 From: mvdbeek Date: Wed, 22 Aug 2018 17:33:51 +0200 Subject: [PATCH] Fix recursion issue in gff_filter_by_feature_count --- lib/galaxy/datatypes/util/gff_util.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/lib/galaxy/datatypes/util/gff_util.py b/lib/galaxy/datatypes/util/gff_util.py index e81296a8cf7..421a5886c75 100644 --- a/lib/galaxy/datatypes/util/gff_util.py +++ b/lib/galaxy/datatypes/util/gff_util.py @@ -188,7 +188,7 @@ class GFFReaderWrapper(NiceReaderWrapper): if not self.seed_interval: while not self.seed_interval: try: - self.seed_interval = GenomicIntervalReader.next(self) + self.seed_interval = super(GenomicIntervalReader, self).__next__() except ParseError as e: handle_parse_error(e) # TODO: When no longer supporting python 2.4 use finally: @@ -215,7 +215,7 @@ class GFFReaderWrapper(NiceReaderWrapper): feature_intervals.append(self.seed_interval) while True: try: - interval = GenomicIntervalReader.next(self) + interval = super(GenomicIntervalReader, self).__next__() raw_size += len(self.current_line) except StopIteration as e: # No more intervals to read, but last feature needs to be