From f68ccbe9fee0ee68961934d7cff434ea9e5c4384 Mon Sep 17 00:00:00 2001
From: Nate Coraor <nate@bx.psu.edu>
Date: Fri, 26 Aug 2011 10:39:34 -0400
Subject: [PATCH] Fix SOAPdenovo binary name

---
 tools/ilmn_pacbio/soap_denovo.xml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/tools/ilmn_pacbio/soap_denovo.xml b/tools/ilmn_pacbio/soap_denovo.xml
index 171ee6eb111..1fb857f9760 100644
--- a/tools/ilmn_pacbio/soap_denovo.xml
+++ b/tools/ilmn_pacbio/soap_denovo.xml
@@ -1,12 +1,12 @@
 <tool id="soap_denovo" name="SOAPdenovo" version="1.0.0">
   <description>Short-read de novo assembly</description>
   <!--
-      # SOAPdenovo127mer all -s ${soap_config} -o assembly -K ${k} -p 8 -d -D
+      # SOAPdenovo-127mer all -s ${soap_config} -o assembly -K ${k} -p 8 -d -D
       # cat ${soap_config} > ${output1}
       # cp ${soap_config} ${output1} &amp;&amp;
   -->
   <command>
-      SOAPdenovo127mer all -s ${soap_config} -o assembly -K ${k} -p 24 -d -D -R
+      SOAPdenovo-127mer all -s ${soap_config} -o assembly -K ${k} -p 24 -d -D -R
   </command>
   <inputs>
     <conditional name="inputs">