From f5fbe1c5020fb432346ce6340833937d13cbf6d0 Mon Sep 17 00:00:00 2001
From: carlfeberhard <carlfeberhard@gmail.com>
Date: Thu, 21 Jan 2016 13:38:12 -0500
Subject: [PATCH] Client: remove older compiled backbone/backbone.js, update
 scatterplot and charts for same; Visualizations: fix visualization-model url;
 Scatterplot: fix title bug and Galaxy var

---
 .../scripts/mvc/visualization/visualization-model.js |  2 +-
 config/plugins/visualizations/charts/Gruntfile.js    |  2 +-
 .../visualizations/charts/static/build-app.js        |  2 +-
 .../visualizations/charts/templates/charts.mako      | 12 ++++++------
 .../scatterplot/templates/scatterplot.mako           | 10 +++++++---
 static/maps/libs/backbone/backbone.js.map            |  1 -
 .../mvc/visualization/visualization-model.js.map     |  2 +-
 static/scripts/libs/backbone/backbone.js             |  2 --
 .../scripts/mvc/visualization/visualization-model.js |  2 +-
 9 files changed, 18 insertions(+), 17 deletions(-)
 delete mode 100644 static/maps/libs/backbone/backbone.js.map
 delete mode 100644 static/scripts/libs/backbone/backbone.js

diff --git a/client/galaxy/scripts/mvc/visualization/visualization-model.js b/client/galaxy/scripts/mvc/visualization/visualization-model.js
index cb4179de734..6c2f9ded47c 100644
--- a/client/galaxy/scripts/mvc/visualization/visualization-model.js
+++ b/client/galaxy/scripts/mvc/visualization/visualization-model.js
@@ -21,7 +21,7 @@ var Visualization = Backbone.Model.extend(
 
     /** override urlRoot to handle prefix */
     urlRoot : function(){
-        var apiUrl = '/api/visualizations';
+        var apiUrl = 'api/visualizations';
         return Galaxy.root + apiUrl;
     },
 
diff --git a/config/plugins/visualizations/charts/Gruntfile.js b/config/plugins/visualizations/charts/Gruntfile.js
index 6ece32d752f..c7dd80ff3cd 100644
--- a/config/plugins/visualizations/charts/Gruntfile.js
+++ b/config/plugins/visualizations/charts/Gruntfile.js
@@ -11,7 +11,7 @@ module.exports = function(grunt) {
                     },
                     shim    : {
                         "libs/underscore": { exports: "_" },
-                        "libs/backbone/backbone": { exports: "Backbone" }
+                        "libs/backbone": { exports: "Backbone" }
                     },
                     name    : "plugin/app",
                     out     : "static/build-app.js",
diff --git a/config/plugins/visualizations/charts/static/build-app.js b/config/plugins/visualizations/charts/static/build-app.js
index 751032751c3..a71ee348feb 100644
--- a/config/plugins/visualizations/charts/static/build-app.js
+++ b/config/plugins/visualizations/charts/static/build-app.js
@@ -1 +1 @@
-define("mvc/ui/ui-modal",[],function(){var e=Backbone.View.extend({elMain:"body",optionsDefault:{title:"ui-modal",body:"",backdrop:!0,height:null,width:null,closing_events:!1,closing_callback:null,title_separator:!0},buttonList:{},initialize:function(e){e&&this._create(e)},show:function(e){this.initialize(e),this.options.height?(this.$body.css("height",this.options.height),this.$body.css("overflow","hidden")):this.$body.css("max-height",$(window).height()/2),this.options.width&&this.$dialog.css("width",this.options.width),this.visible?this.$el.show():this.$el.fadeIn("fast"),this.visible=!0},hide:function(){this.visible=!1,this.$el.fadeOut("fast"),this.options.closing_callback&&this.options.closing_callback()},enableButton:function(e){var t=this.buttonList[e];this.$buttons.find("#"+t).prop("disabled",!1)},disableButton:function(e){var t=this.buttonList[e];this.$buttons.find("#"+t).prop("disabled",!0)},showButton:function(e){var t=this.buttonList[e];this.$buttons.find("#"+t).show()},hideButton:function(e){var t=this.buttonList[e];this.$buttons.find("#"+t).hide()},getButton:function(e){var t=this.buttonList[e];return this.$buttons.find("#"+t)},scrollTop:function(){return this.$body.scrollTop()},_create:function(e){var t=this;if(this.options=_.defaults(e,this.optionsDefault),"progress"==this.options.body&&(this.options.body=$('<div class="progress progress-striped active"><div class="progress-bar progress-bar-info" style="width:100%"></div></div>')),this.$el&&(this.$el.remove(),$(document).off("keyup.ui-modal")),this.setElement(this._template(this.options.title)),this.$dialog=this.$el.find(".modal-dialog"),this.$body=this.$el.find(".modal-body"),this.$footer=this.$el.find(".modal-footer"),this.$buttons=this.$el.find(".buttons"),this.$backdrop=this.$el.find(".modal-backdrop"),this.$body.html(this.options.body),this.options.backdrop||this.$backdrop.removeClass("in"),this.options.buttons){this.buttonList={};var n=0;$.each(this.options.buttons,function(e,r){var i="button-"+n++;t.$buttons.append($('<button id="'+i+'"></button>').text(e).click(r)).append(" "),t.buttonList[e]=i})}else this.$footer.hide();$(this.elMain).append($(this.el)),this.options.closing_events&&($(document).on("keyup.ui-modal",function(e){27==e.keyCode&&t.hide()}),this.$el.find(".modal-backdrop").on("click",function(){t.hide()})),this.options.title_separator||this.$(".modal-header").css({border:"none","padding-bottom":"0px"})},_template:function(e){return'<div class="ui-modal modal"><div class="modal-backdrop fade in" style="z-index: -1;"></div><div class="modal-dialog"><div class="modal-content"><div class="modal-header"><button type="button" class="close" style="display: none;">&times;</button><h4 class="title">'+e+'</h4></div><div class="modal-body" style="position: static;"></div><div class="modal-footer"><div class="buttons" style="float: right;"></div></div></div</div></div>'}});return{View:e}}),define("utils/utils",[],function(){function e(e){return'<iframe src="'+e+'" frameborder="0" style="width: 100%; height: 100%;"/>'}function t(e,n){for(var r in e){var i=e[r];if(_.isObject(i)){var s=n(i);s&&(e[r]=s),t(i,n)}}}function n(e){return/^[\],:{}\s]*$/.test(e.replace(/\\["\\\/bfnrtu]/g,"@").replace(/"[^"\\\n\r]*"|true|false|null|-?\d+(?:\.\d*)?(?:[eE][+\-]?\d+)?/g,"]").replace(/(?:^|:|,)(?:\s*\[)+/g,""))}function r(e){return $("<div/>").text(e).html()}function i(e){if(e instanceof Array||(e=[e]),0===e.length)return!1;for(var t in e)if(["__null__","__undefined__",null,void 0].indexOf(e[t])>-1)return!1;return!0}function s(e){var e=e.toString();if(e){e=e.replace(/,/g,", ");var t=e.lastIndexOf(", ");return-1!=t&&(e=e.substr(0,t)+" or "+e.substr(t+1)),e}return""}function o(e){top.__utils__get__=top.__utils__get__||{},e.cache&&top.__utils__get__[e.url]?(e.success&&e.success(top.__utils__get__[e.url]),console.debug("utils.js::get() - Fetching from cache ["+e.url+"].")):u({url:e.url,data:e.data,success:function(t){top.__utils__get__[e.url]=t,e.success&&e.success(t)},error:function(t){e.error&&e.error(t)}})}function u(e){var t={contentType:"application/json",type:e.type||"GET",data:e.data||{},url:e.url};"GET"==t.type||"DELETE"==t.type?(t.url+=-1==t.url.indexOf("?")?"?":"&",t.url=t.url+$.param(t.data,!0),t.data=null):(t.dataType="json",t.url=t.url,t.data=JSON.stringify(t.data)),$.ajax(t).done(function(t){if("string"==typeof t)try{t=t.replace("Infinity,",'"Infinity",'),t=jQuery.parseJSON(t)}catch(n){console.debug(n)}e.success&&e.success(t)}).fail(function(t){var n=null;try{n=jQuery.parseJSON(t.responseText)}catch(r){n=t.responseText}e.error&&e.error(n,t)}).always(function(){e.complete&&e.complete()})}function a(e,t){var n=$('<div class="'+e+'"></div>');n.appendTo(":eq(0)");var r=n.css(t);return n.remove(),r}function f(e){$('link[href^="'+e+'"]').length||$('<link href="'+galaxy_config.root+e+'" rel="stylesheet">').appendTo("head")}function l(e,t){return e?_.defaults(e,t):t}function c(e,t){for(var n=1,r=0;t>r;r++)n*=10;return Math.round(e*n)/n}function h(e,t,n){n=void 0!==n?n:1;var r="";if(e>=y)e/=y,r="TB";else if(e>=g)e/=g,r="GB";else if(e>=m)e/=m,r="MB";else if(e>=v)e/=v,r="KB";else{if(!(e>0))return t?"0 b":"<strong>-</strong>";r="b"}var i="b"==r?e:c(e,n);return t?i+" "+r:"<strong>"+i+"</strong> "+r}function p(){return top.__utils__uid__=top.__utils__uid__||0,"uid-"+top.__utils__uid__++}function d(){var e=new Date,t=(e.getHours()<10?"0":"")+e.getHours(),n=(e.getMinutes()<10?"0":"")+e.getMinutes();return datetime=e.getDate()+"/"+(e.getMonth()+1)+"/"+e.getFullYear()+", "+t+":"+n}var v=1024,m=v*v,g=m*v,y=g*v;return{cssLoadFile:f,cssGetAttribute:a,get:o,merge:l,iframe:e,bytesToString:h,uid:p,time:d,request:u,sanitize:r,textify:s,validate:i,deepeach:t,isJSON:n}}),define("mvc/ui/ui-portlet",["utils/utils"],function(e){var t=Backbone.View.extend({visible:!1,initialize:function(t){var n=this;this.options=e.merge(t,{id:e.uid(),title:"",icon:"",buttons:null,body:null,scrollable:!0,nopadding:!1,operations:null,placement:"bottom",cls:"ui-portlet",operations_flt:"right",collapsible:!1,collapsed:!1}),this.setElement(this._template(this.options)),this.$body=this.$(".portlet-body"),this.$title=this.$(".portlet-title-text"),this.$header=this.$(".portlet-header"),this.$content=this.$(".portlet-content"),this.$footer=this.$(".portlet-footer"),this.options.nopadding&&(this.$content.css("padding","0px"),this.$body.css("padding","0px")),this.$buttons=this.$(".portlet-buttons"),this.options.buttons?$.each(this.options.buttons,function(e,t){t.$el.prop("id",e),n.$buttons.append(t.$el)}):this.$buttons.remove(),this.$operations=this.$(".portlet-operations"),this.options.operations&&$.each(this.options.operations,function(e,t){t.$el.prop("id",e),n.$operations.append(t.$el)}),this.options.body&&this.append(this.options.body),this.collapsed=!1,this.options.collapsible&&(this.$title.addClass("no-highlight").css({cursor:"pointer","text-decoration":"underline"}),this.$title.on("click",function(){n.collapsed?n.expand():n.collapse()}),this.options.collapsed&&this.collapse())},append:function(e){this.$body.append(e)},empty:function(){this.$body.empty()},header:function(){return this.$header},body:function(){return this.$body},footer:function(){return this.$footer},show:function(){this.visible=!0,this.$el.fadeIn("fast")},hide:function(){this.visible=!1,this.$el.fadeOut("fast")},enableButton:function(e){this.$buttons.find("#"+e).prop("disabled",!1)},disableButton:function(e){this.$buttons.find("#"+e).prop("disabled",!0)},hideOperation:function(e){this.$operations.find("#"+e).hide()},showOperation:function(e){this.$operations.find("#"+e).show()},setOperation:function(e,t){var n=this.$operations.find("#"+e);n.off("click"),n.on("click",t)},title:function(e){var t=this.$title;return e&&t.html(e),t.html()},collapse:function(){this.collapsed=!0,this.$content.height("0%"),this.$body.hide(),this.$footer.hide(),this.trigger("collapsed")},expand:function(){this.collapsed=!1,this.$content.height("100%"),this.$body.fadeIn("fast"),this.$footer.fadeIn("fast"),this.trigger("expanded")},disable:function(){this.$(".portlet-backdrop").show()},enable:function(){this.$(".portlet-backdrop").hide()},_template:function(e){var t='<div id="'+e.id+'" class="'+e.cls+'">';return e.title&&(t+='<div class="portlet-header"><div class="portlet-operations" style="float: '+e.operations_flt+';"/><div class="portlet-title">',e.icon&&(t+='<i class="icon fa '+e.icon+'">&nbsp;</i>'),t+='<span class="portlet-title-text">'+e.title+"</span></div></div>"),t+='<div class="portlet-content">',"top"==e.placement&&(t+='<div class="portlet-buttons"/>'),t+='<div class="portlet-body"/>',"bottom"==e.placement&&(t+='<div class="portlet-buttons"/>'),t+='</div><div class="portlet-footer"/><div class="portlet-backdrop"/></div>'}});return{View:t}}),define("mvc/ui/ui-buttons",["utils/utils"],function(e){var t=Backbone.View.extend({initialize:function(t){this.options=e.merge(t,{id:e.uid(),title:"",floating:"right",icon:"",cls:"ui-button btn btn-default",cls_wait:"btn btn-info"}),this.setElement(this._template(this.options));var n=this;$(this.el).on("click",function(){$(".tooltip").hide(),t.onclick&&!n.disabled&&t.onclick()}),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},disable:function(){this.$el.addClass("disabled"),this.disabled=!0},enable:function(){this.$el.removeClass("disabled"),this.disabled=!1},wait:function(){this.$el.removeClass(this.options.cls).addClass(this.options.cls_wait).prop("disabled",!0),this.$(".icon").removeClass(this.options.icon).addClass("fa-spinner fa-spin"),this.$(".title").html("Sending...")},unwait:function(){this.$el.removeClass(this.options.cls_wait).addClass(this.options.cls).prop("disabled",!1),this.$(".icon").removeClass("fa-spinner fa-spin").addClass(this.options.icon),this.$(".title").html(this.options.title)},_template:function(e){var t='<button id="'+e.id+'" type="submit" style="float: '+e.floating+';" type="button" class="'+e.cls+'">';return e.icon&&(t+='<i class="icon fa '+e.icon+'"/>&nbsp;'),t+='<span class="title">'+e.title+"</span></button>"}}),n=t.extend({initialize:function(e){t.prototype.initialize.call(this,e)},_template:function(e){return'<a id="'+e.id+'" class="'+e.cls+'" href="'+(e.href||"javascript:void(0)")+'" title="'+e.title+'" target="'+(e.target||"_top")+'"><span class="'+e.icon+'"/></a>'}}),r=Backbone.View.extend({initialize:function(t){this.options=e.merge(t,{title:"Select/Unselect all",icons:["fa fa-square-o","fa fa-minus-square-o","fa fa-check-square-o"],value:0}),this.setElement(this._template()),this.$title=this.$(".title"),this.$icon=this.$(".icon"),this.value(this.options.value),this.$title.html(this.options.title);var n=this;this.$el.on("click",function(){n.current=0===n.current&&2||0,n.value(n.current),n.options.onclick&&n.options.onclick()})},value:function(e,t){return void 0!==e&&(t&&0!==e&&(e=e!==t&&1||2),this.current=e,this.$icon.removeClass().addClass("icon").addClass(this.options.icons[e]),this.options.onchange&&this.options.onchange(e)),this.current},_template:function(){return'<div class="ui-button-check" ><span class="icon"/><span class="title"/></div>'}}),i=Backbone.View.extend({initialize:function(t){this.options=e.merge(t,{id:e.uid(),title:"",floating:"right",cls:"ui-button-icon",icon:"",tooltip:"",onclick:null}),this.setElement(this._template(this.options)),this.$button=this.$el.find(".button");var n=this;$(this.el).on("click",function(){$(".tooltip").hide(),t.onclick&&!n.disabled&&t.onclick()}),this.$button.tooltip({title:t.tooltip,placement:"bottom"})},disable:function(){this.$button.addClass("disabled"),this.disabled=!0},enable:function(){this.$button.removeClass("disabled"),this.disabled=!1},setIcon:function(e){this.$("i").removeClass(this.options.icon).addClass(e),this.options.icon=e},_template:function(e){var t="";e.title&&(t="width: auto;");var n='<div id="'+e.id+'" style="float: '+e.floating+"; "+t+'" class="'+e.cls+'"><div class="button">';return n+=e.title?'<i class="icon fa '+e.icon+'"/>&nbsp;<span class="title">'+e.title+"</span>":'<i class="icon fa '+e.icon+'"/>',n+="</div></div>"}}),s=Backbone.View.extend({$menu:null,initialize:function(t){this.options=e.merge(t,{id:"",title:"",floating:"right",pull:"right",icon:null,onclick:null,cls:"ui-button-icon ui-button-menu",tooltip:"",target:"",href:"",onunload:null,visible:!0,tag:""}),this.setElement($(this._template(this.options)));var n=$(this.el).find(".root"),r=this;n.on("click",function(e){$(".tooltip").hide(),e.preventDefault(),r.options.onclick&&r.options.onclick()}),this.options.visible||this.hide(),n.tooltip({title:t.tooltip,placement:"bottom"})},show:function(){$(this.el).show()},hide:function(){$(this.el).hide()},addMenu:function(t){var n={title:"",target:"",href:"",onclick:null,divider:!1,icon:null,cls:"button-menu btn-group"};n=e.merge(t,n),this.$menu||($(this.el).append(this._templateMenu()),this.$menu=$(this.el).find(".menu"));var r=$(this._templateMenuItem(n));r.on("click",function(e){e.preventDefault(),n.onclick&&n.onclick()}),this.$menu.append(r),n.divider&&this.$menu.append($(this._templateDivider()))},_templateMenuItem:function(e){var t='<li><a class="dropdown-item" href="'+e.href+'" target="'+e.target+'">';return e.icon&&(t+='<i class="fa '+e.icon+'"/>'),t+=" "+e.title+"</a></li>"},_templateMenu:function(){return'<ul class="menu dropdown-menu pull-'+this.options.pull+'" role="menu"/>'},_templateDivider:function(){return'<li class="divider"/>'},_template:function(e){var t="",n="";e.title?t="width: auto;":n="margin: 0px;";var r='<div id="'+e.id+'" style="float: '+e.floating+"; "+t+'" class="dropdown '+e.cls+'"><div class="root button dropdown-toggle" data-toggle="dropdown" style="'+n+'"><i class="icon fa '+e.icon+'"/>';return e.title&&(r+='&nbsp;<span class="title">'+e.title+"</span>"),r+="</div></div>"}});return{ButtonDefault:t,ButtonLink:n,ButtonIcon:i,ButtonCheck:r,ButtonMenu:s}}),define("mvc/ui/ui-select-default",["utils/utils","mvc/ui/ui-buttons"],function(e,t){var n=Backbone.View.extend({optionsDefault:{id:e.uid(),cls:"ui-select",error_text:"No options available",empty_text:"Nothing selected",visible:!0,wait:!1,multiple:!1,searchable:!0,optional:!1},initialize:function(n){var r=this;this.options=e.merge(n,this.optionsDefault),this.setElement(this._template(this.options)),this.$select=this.$el.find(".select"),this.$icon_dropdown=this.$el.find(".icon-dropdown");var i=null;this.$(".icon-resize").on("mousedown",function(e){var t=e.pageY,n=r.$select.height();i=i||n,$("#dd-helper").show().on("mousemove",function(e){r.$select.height(Math.max(n+(e.pageY-t),i))}).on("mouseup mouseleave",function(){$("#dd-helper").hide().off()})}),this.options.multiple&&(this.options.searchable?(this.all_button=new t.ButtonCheck({onclick:function(){var e=[];0!==r.all_button.value()&&(e=r._availableOptions()),r.value(e),r.trigger("change")}}),this.$el.prepend(this.all_button.$el)):this.$el.addClass("ui-select-multiple"),this.$select.prop("multiple",!0),this.$icon_dropdown.remove()),this.update(this.options.data),void 0!==this.options.value&&this.value(this.options.value),this.options.visible||this.hide(),this.options.wait?this.wait():this.show(),this.$select.on("change",function(){r.trigger("change")}),this.on("change",function(){r.options.onchange&&r.options.onchange(this.value())})},value:function(e){void 0!==e&&(null===e&&(e="__null__"),(this.exists(e)||this.options.multiple)&&(this.$select.val(e),this.$select.select2&&this.$select.select2("val",e)));var t=this._getValue();return this.all_button&&this.all_button.value($.isArray(t)&&t.length||0,this._size()),t},first:function(){var e=this.$select.find("option").first();return e.length>0?e.val():null},text:function(){return this.$select.find("option:selected").text()},show:function(){this.unwait(),this.$select.show(),this.$el.show()},hide:function(){this.$el.hide()},wait:function(){this.$icon_dropdown.removeClass(),this.$icon_dropdown.addClass("icon-dropdown fa fa-spinner fa-spin")},unwait:function(){this.$icon_dropdown.removeClass(),this.$icon_dropdown.addClass("icon-dropdown fa fa-caret-down")},disabled:function(){return this.$select.is(":disabled")},enable:function(){this.$select.prop("disabled",!1)},disable:function(){this.$select.prop("disabled",!0)},update:function(e){var t=this._getValue();this.$select.find("option").remove(),!this.options.multiple&&this.options.optional&&this.$select.append(this._templateOption({value:"__null__",label:this.options.empty_text}));for(var n in e)this.$select.append(this._templateOption(e[n]));0==this._size()?(this.disable(),this.$select.append(this._templateOption({value:"__null__",label:this.options.error_text}))):this.enable(),this.options.searchable&&(this.$select.select2("destroy"),this.$select.select2({closeOnSelect:!this.options.multiple}),this.$(".select2-container .select2-search input").off("blur")),this.value(t),null!==this._getValue()||this.options.multiple&&this.options.optional||this.value(this.first())},setOnChange:function(e){this.options.onchange=e},exists:function(e){return this.$select.find('option[value="'+e+'"]').length>0},_getValue:function(){var t=this.$select.val();return e.validate(t)?t:null},_availableOptions:function(){var e=[];return this.$select.find("option").each(function(t,n){e.push($(n).attr("value"))}),e},_size:function(){return this.$select.find("option").length},_templateOption:function(e){return'<option value="'+e.value+'">'+e.label+"</option>"},_template:function(e){return'<div id="'+e.id+'" class="'+e.cls+'"><select id="'+e.id+'_select" class="select"/><div class="icon-dropdown"/><div class="icon-resize"><i class="fa fa-angle-double-right fa-rotate-45"/></div></div>'}});return{View:n}}),define("mvc/ui/ui-slider",["utils/utils"],function(e){var t=Backbone.View.extend({initialize:function(t){var n=this;this.options=e.merge(t,{id:e.uid(),min:null,max:null,step:null,precise:!1,split:1e4}),this.setElement(this._template(this.options)),this.useslider=null!==this.options.max&&null!==this.options.min&&this.options.max>this.options.min,null===this.options.step&&(this.options.step=1,this.options.precise&&this.useslider&&(this.options.step=(this.options.max-this.options.min)/this.options.split)),this.useslider?(this.$slider=this.$("#slider"),this.$slider.slider(this.options),this.$slider.on("slide",function(e,t){n.value(t.value)})):this.$(".ui-form-slider-text").css("width","100%"),this.$text=this.$("#text"),void 0!==this.options.value&&this.value(this.options.value);var r=[];this.$text.on("change",function(){n.value($(this).val())}),this.$text.on("keyup",function(e){r[e.which]=!1,n.options.onchange&&n.options.onchange($(this).val())}),this.$text.on("keydown",function(e){var t=e.which;r[t]=!0,n.options.is_workflow&&r[16]&&52==t?(n.value("$"),event.preventDefault()):8==t||9==t||13==t||37==t||39==t||t>=48&&57>=t&&!r[16]||t>=96&&105>=t||(190==t||110==t)&&-1==$(this).val().indexOf(".")&&n.options.precise||(189==t||109==t)&&-1==$(this).val().indexOf("-")||n._isParameter($(this).val())||r[91]||r[17]||event.preventDefault()})},value:function(e){return void 0!==e&&(null===e||""===e||this._isParameter(e)||(isNaN(e)&&(e=0),null!==this.options.max&&(e=Math.min(e,this.options.max)),null!==this.options.min&&(e=Math.max(e,this.options.min))),this.$slider&&this.$slider.slider("value",e),this.$text.val(e),this.options.onchange&&this.options.onchange(e)),this.$text.val()},_isParameter:function(e){return this.options.is_workflow&&"$"===String(e).substring(0,1)},_template:function(e){return'<div id="'+e.id+'" class="ui-form-slider"><input id="text" type="text" class="ui-form-slider-text"/><div id="slider" class="ui-form-slider-element"/></div>'}});return{View:t}}),define("mvc/ui/ui-options",["utils/utils","mvc/ui/ui-buttons"],function(e,t){var n=Backbone.View.extend({initialize:function(n){var r=this;this.options=e.merge(n,{visible:!0,data:[],id:e.uid(),error_text:"No options available.",wait_text:"Please wait...",multiple:!1}),this.setElement('<div class="ui-options"/>'),this.$message=$("<div/>"),this.$options=$(this._template(n)),this.$menu=$('<div class="ui-options-menu"/>'),this.$el.append(this.$message),this.$el.append(this.$menu),this.$el.append(this.$options),this.options.multiple&&(this.all_button=new t.ButtonCheck({onclick:function(){r.$("input").prop("checked",0!==r.all_button.value()),r.trigger("change")}}),this.$menu.append(this.all_button.$el)),this.options.visible||this.$el.hide(),this.update(this.options.data),void 0!==this.options.value&&this.value(this.options.value),this.on("change",function(){this.options.onchange&&this.options.onchange(this.value())})},update:function(e){var t=this._getValue();if(this.$options.empty(),this._templateOptions)this.$options.append(this._templateOptions(e));else for(var n in e){var r=$(this._templateOption(e[n]));r.addClass("ui-option"),r.tooltip({title:e[n].tooltip,placement:"bottom"}),this.$options.append(r)}var i=this;this.$("input").on("change",function(){i.value(i._getValue()),i.trigger("change")}),this.value(t),this.unwait()},value:function(e){if(void 0!==e&&(this.$("input").prop("checked",!1),null!==e)){e instanceof Array||(e=[e]);for(var t in e)this.$('input[value="'+e[t]+'"]').first().prop("checked",!0)}var n=this._getValue();if(this.all_button){var r=n;r=r instanceof Array?r.length:0,this.all_button.value(r,this._size())}return n},exists:function(e){if(void 0!==e){e instanceof Array||(e=[e]);for(var t in e)if(this.$('input[value="'+e[t]+'"]').length>0)return!0}return!1},first:function(){var e=this.$("input").first();return e.length>0?e.val():null},wait:function(){0==this._size()&&(this._messageShow(this.options.wait_text,"info"),this.$options.hide(),this.$menu.hide())},unwait:function(){var e=this._size();0==e?(this._messageShow(this.options.error_text,"danger"),this.$options.hide(),this.$menu.hide()):(this._messageHide(),this.$options.css("display","inline-block"),this.$menu.show())},_getValue:function(){var t=[];return this.$(":checked").each(function(){t.push($(this).val())}),e.validate(t)?this.options.multiple?t:t[0]:null},_size:function(){return this.$(".ui-option").length},_messageShow:function(e,t){this.$message.show(),this.$message.removeClass(),this.$message.addClass("ui-message alert alert-"+t),this.$message.html(e)},_messageHide:function(){this.$message.hide()},_template:function(){return'<div class="ui-options-list"/>'}}),r=n.extend({_templateOption:function(t){var n=e.uid();return'<div class="ui-option"><input id="'+n+'" type="'+this.options.type+'" name="'+this.options.id+'" value="'+t.value+'"/><label class="ui-options-label" for="'+n+'">'+t.label+"</label></div>"}}),i={};i.View=r.extend({initialize:function(e){e.type="radio",r.prototype.initialize.call(this,e)}});var s={};s.View=r.extend({initialize:function(e){e.multiple=!0,e.type="checkbox",r.prototype.initialize.call(this,e)}});var o={};return o.View=n.extend({initialize:function(e){n.prototype.initialize.call(this,e)},value:function(e){return void 0!==e&&(this.$("input").prop("checked",!1),this.$("label").removeClass("active"),this.$('[value="'+e+'"]').prop("checked",!0).closest("label").addClass("active")),this._getValue()},_templateOption:function(e){var t="fa "+e.icon;e.label||(t+=" no-padding");var n='<label class="btn btn-default">';return e.icon&&(n+='<i class="'+t+'"/>'),n+='<input type="radio" name="'+this.options.id+'" value="'+e.value+'"/>',e.label&&(n+=e.label),n+="</label>"},_template:function(){return'<div class="btn-group ui-radiobutton" data-toggle="buttons"/>'}}),{Base:n,BaseIcons:r,Radio:i,RadioButton:o,Checkbox:s}}),define("mvc/ui/ui-drilldown",["utils/utils","mvc/ui/ui-options"],function(e,t){var n=t.BaseIcons.extend({initialize:function(e){e.type=e.display||"checkbox",e.multiple="checkbox"==e.display,t.BaseIcons.prototype.initialize.call(this,e),this.initial=!0},value:function(e){var n=t.BaseIcons.prototype.value.call(this,e);if(this.initial&&null!==n&&this.header_index){this.initial=!1;var r=n;$.isArray(r)||(r=[r]);for(var i in r){var s=this.header_index[r[i]];for(var o in s)this._setState(s[o],!0)}}return n},_setState:function(e,t){var n=this.$(".button-"+e),r=this.$(".subgroup-"+e);n.data("is_expanded",t),t?(r.fadeIn("fast"),n.removeClass("toggle-expand"),n.addClass("toggle")):(r.hide(),n.removeClass("toggle"),n.addClass("toggle-expand"))},_templateOptions:function(t){function n(e,t){var n=e.find(".button-"+t);n.on("click",function(){s._setState(t,!n.data("is_expanded"))})}function r(t,o,u){u=u||[];for(i in o){var f=o[i],l=f.options.length>0,h=u.slice(0);s.header_index[f.value]=h.slice(0);var p=$("<div/>");if(l){var v=e.uid(),m=$('<span class="button-'+v+' ui-drilldown-button form-toggle icon-button toggle-expand"/>'),g=$('<div class="subgroup-'+v+'" style="display: none; margin-left: 25px;"/>');h.push(v);var y=$("<div/>");y.append(m),y.append(s._templateOption({label:f.name,value:f.value})),p.append(y),r(g,f.options,h),p.append(g),n(p,v)}else p.append(s._templateOption({label:f.name,value:f.value}));t.append(p)}}var s=this;this.header_index={};var o=$("<div/>");return r(o,t),o},_template:function(e){return'<div class="ui-options-list drilldown-container" id="'+e.id+'"/>'}});return{View:n}}),define("mvc/ui/ui-misc",["utils/utils","mvc/ui/ui-select-default","mvc/ui/ui-slider","mvc/ui/ui-options","mvc/ui/ui-drilldown","mvc/ui/ui-buttons","mvc/ui/ui-modal"],function(e,t,n,r,i,s,o){var u=Backbone.View.extend({initialize:function(t){this.options=e.merge(t,{url:"",cls:""}),this.setElement(this._template(this.options))},_template:function(e){return'<img class="ui-image '+e.cls+'" src="'+e.url+'"/>'}}),a=Backbone.View.extend({initialize:function(t){this.options=e.merge(t,{title:"",cls:"",tagname:"label"}),this.setElement(this._template(this.options))},title:function(e){this.$el.html(e)},value:function(){return options.title},_template:function(e){return $("<"+e.tagname+"/>").addClass("ui-label").addClass(e.cls).html(e.title)}}),f=Backbone.View.extend({initialize:function(t){this.options=e.merge(t,{floating:"right",icon:"",tooltip:"",placement:"bottom",title:"",cls:""}),this.setElement(this._template(this.options)),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},_template:function(e){return'<div><span class="fa '+e.icon+'" class="ui-icon"/>&nbsp;'+e.title+"</div>"}}),l=Backbone.View.extend({initialize:function(t){this.options=e.merge(t,{title:"",cls:""}),this.setElement(this._template(this.options)),$(this.el).on("click",t.onclick)},_template:function(e){return'<div><a href="javascript:void(0)" class="ui-anchor '+e.cls+'">'+e.title+"</a></div>"}}),c=Backbone.View.extend({initialize:function(t){this.options=e.merge(t,{message:null,status:"info",cls:"",persistent:!1}),this.setElement('<div class="'+this.options.cls+'"/>'),this.options.message&&this.update(this.options)},update:function(t){if(this.options=e.merge(t,this.options),""!=t.message){if(this.$el.html(this._template(this.options)),this.$el.fadeIn(),this.timeout&&window.clearTimeout(this.timeout),!t.persistent){var n=this;this.timeout=window.setTimeout(function(){n.$el.is(":visible")?n.$el.fadeOut():n.$el.hide()},3e3)}}else this.$el.fadeOut()},_template:function(e){var t="ui-message alert alert-"+e.status;return e.large&&(t=("success"==e.status&&"done"||"danger"==e.status&&"error"||e.status)+"messagelarge"),'<div class="'+t+'" >'+e.message+"</div>"}}),h=Backbone.View.extend({initialize:function(t){this.options=e.merge(t,{onclick:null,searchword:""}),this.setElement(this._template(this.options));var n=this;this.options.onclick&&this.$el.on("submit",function(){var e=n.$el.find("#search");n.options.onclick(e.val())})},_template:function(e){return'<div class="ui-search"><form onsubmit="return false;"><input id="search" class="form-control input-sm" type="text" name="search" placeholder="Search..." value="'+e.searchword+'"><button type="submit" class="btn search-btn"><i class="fa fa-search"></i></button></form></div>'}}),p=Backbone.View.extend({initialize:function(t){this.options=e.merge(t,{type:"text",placeholder:"",disabled:!1,visible:!0,cls:"",area:!1}),this.setElement(this._template(this.options)),void 0!==this.options.value&&this.value(this.options.value),this.options.disabled&&this.$el.prop("disabled",!0),this.options.visible||this.$el.hide();var n=this;this.$el.on("input",function(){n.options.onchange&&n.options.onchange(n.$el.val())})},value:function(e){return void 0!==e&&this.$el.val(e),this.$el.val()},_template:function(e){return e.area?'<textarea id="'+e.id+'" class="ui-textarea '+e.cls+'"></textarea>':'<input id="'+e.id+'" type="'+e.type+'" value="'+e.value+'" placeholder="'+e.placeholder+'" class="ui-input '+e.cls+'">'}}),d=Backbone.View.extend({initialize:function(e){this.options=e,this.setElement(this._template(this.options)),void 0!==this.options.value&&this.value(this.options.value)},value:function(e){return void 0!==e&&this.$("hidden").val(e),this.$("hidden").val()},_template:function(e){var t='<div id="'+e.id+'" >';return e.info&&(t+="<div>"+e.info+"</div>"),t+='<hidden value="'+e.value+'"/></div>'}});return{Anchor:l,Button:s.ButtonDefault,ButtonIcon:s.ButtonIcon,ButtonCheck:s.ButtonCheck,ButtonMenu:s.ButtonMenu,ButtonLink:s.ButtonLink,Icon:f,Image:u,Input:p,Label:a,Message:c,Modal:o,RadioButton:r.RadioButton,Checkbox:r.Checkbox,Radio:r.Radio,Searchbox:h,Select:t,Hidden:d,Slider:n,Drilldown:i}}),define("plugin/library/jobs",["utils/utils"],function(e){return Backbone.Model.extend({initialize:function(t,n){this.app=t,this.options=e.merge(n,this.optionsDefault)},request:function(e,t,n,r,i){var s=this;e.state("wait","Requesting job results...");var o=e.get("dataset_id_job");o!=""?s._wait(e,r,i):s._submit(e,t,n,r,i)},cleanup:function(t){var n=this,r=t.get("dataset_id_job");r!=""&&(e.request({type:"PUT",url:config.root+"api/histories/none/contents/"+r,data:{deleted:!0},success:function(){n._refreshHdas()}}),t.set("dataset_id_job",""))},_submit:function(t,n,r,i,s){var o=this,u=t.id,a=t.get("type"),f=t.definition;data={tool_id:"charts",inputs:{input:{id:t.get("dataset_id"),src:"hda"},module:f.execute,columns:r,settings:n}},t.state("wait","Sending job request..."),e.request({type:"POST",url:config.root+"api/tools",data:data,success:function(e){if(!e.outputs||e.outputs.length==0)t.state("failed","Job submission failed. No response."),s&&s();else{o._refreshHdas();var n=e.outputs[0];t.state("wait","Your job has been queued. You may close the browser window. The job will run in the background."),t.set("dataset_id_job",n.id),o.app.storage.save(),o._wait(t,i,s)}},error:function(e){var n="";e&&e.message&&e.message.data&&e.message.data.input&&(n=e.message.data.input+"."),t.state("failed","This visualization requires the 'charts' tool. Please make sure it is installed. "+n),s&&s()}})},_wait:function(t,n,r){var i=this;e.request({type:"GET",url:config.root+"api/datasets/"+t.get("dataset_id_job"),data:{},success:function(e){var s=!1;switch(e.state){case"ok":t.state("wait","Job completed successfully..."),n&&n(e),s=!0;break;case"error":t.state("failed","Job has failed. Please check the history for details."),r&&r(e),s=!0;break;case"running":t.state("wait","Your job is running. You may close the browser window. The job will continue in the background.")}s||setTimeout(function(){i._wait(t,n,r)},i.app.config.get("query_timeout"))}})},_refreshHdas:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.refreshContents()}})}),define("plugin/library/datasets",["utils/utils"],function(e){return Backbone.Collection.extend({list:{},cache:{},initialize:function(t,n){this.app=t,this.options=e.merge(n,this.optionsDefault)},request:function(e){e.groups?this._get_blocks(e):this._get_dataset(e.id,e.success,e.error)},_get_blocks:function(e){function c(i){l._get(i,function(){var s=!1;for(var o in e.groups){destination_group=e.groups[o],source_group=i.groups[o],destination_group.values||(destination_group.values=[]),destination_group.values=destination_group.values.concat(source_group.values);if(source_group.values.length==0){s=!0;break}}if(++f<u&&!s){n&&n(parseInt(f/u*100));var l=i.start+r;i=$.extend(!0,a,{start:l}),c(i)}else t()})}var t=e.success,n=e.progress,r=this.app.config.get("query_limit"),i=e.start||0,s=i+e.query_limit||i+this.app.config.get("query_limit"),o=Math.abs(s-i);if(o<=0){console.debug("FAILED - Datasets::request() - Invalid query range.");return}var u=Math.ceil(o/r)||1,a=$.extend(!0,{},e),f=0,l=this,h=$.extend(!0,a,{start:i});this._get_dataset(e.id,function(){c(h)})},_get_dataset:function(t,n,r){var i=this.list[t];if(i){n(i);return}var s=this;e.request({type:"GET",url:config.root+"api/datasets/"+t,success:function(e){switch(e.state){case"error":r&&r(e);break;default:s.list[t]=e,n(e)}}})},_block_id:function(e,t){return e.id+"_"+e.start+"_"+e.start+this.app.config.get("query_limit")+"_"+t},_get:function(e,t){e.start=e.start||0;var n=[],r={},i=0;for(var s in e.groups){var o=e.groups[s];for(var u in o.columns){var a=o.columns[u].index,f=this._block_id(e,a);if(this.cache[f]||a==="auto"||a==="zero")continue;!r[a]&&a!==undefined&&(r[a]=i,n.push(a),i++)}}if(n.length==0){this._fill_from_cache(e),t(e);return}var l={dataset_id:e.id,start:e.start,columns:n},c=this;this._fetch(l,function(r){for(var i in r){var s=n[i],o=c._block_id(e,s);c.cache[o]=r[i]}c._fill_from_cache(e),t(e)})},_fill_from_cache:function(e){var t=e.start;console.debug("Datasets::_fill_from_cache() - Filling request from cache at "+t+".");var n=0;for(var r in e.groups){var i=e.groups[r];for(var s in i.columns){var o=i.columns[s],u=this._block_id(e,o.index),a=this.cache[u];a&&(n=Math.max(n,a.length))}}n==0&&console.debug("Datasets::_fill_from_cache() - Reached data range limit.");for(var r in e.groups){var i=e.groups[r];i.values=[];for(var f=0;f<n;f++)i.values[f]={x:parseInt(f)+t}}for(var r in e.groups){var i=e.groups[r];for(var s in i.columns){var o=i.columns[s];switch(o.index){case"auto":for(var f=0;f<n;f++){var l=i.values[f];l[s]=parseInt(f)+t}break;case"zero":for(var f=0;f<n;f++){var l=i.values[f];l[s]=0}break;default:var u=this._block_id(e,o.index),a=this.cache[u];for(var f=0;f<n;f++){var l=i.values[f],c=a[f];isNaN(c)&&!o.is_label&&!o.is_text&&(c=0),l[s]=c}}}}},_fetch:function(t,n){var r=t.start?t.start:0,i=this.app.config.get("query_limit"),s=0;t.columns&&(s=t.columns.length,console.debug("Datasets::_fetch() - Fetching "+s+" column(s) at "+r+".")),s==0&&console.debug("Datasets::_fetch() - No columns requested");var o="";for(var u in t.columns)o+=t.columns[u]+",";o=o.substring(0,o.length-1);var a=this;e.request({type:"GET",url:config.root+"api/datasets/"+t.dataset_id,data:{data_type:"raw_data",provider:"dataset-column",limit:i,offset:r,indeces:o},success:function(e){var t=new Array(s);for(var r=0;r<s;r++)t[r]=[];for(var r in e.data){var i=e.data[r];for(var o in i){var u=i[o];u!==undefined&&u!=2147483647&&t[o].push(u)}}console.debug("Datasets::_fetch() - Fetching complete."),n(t)}})}})}),define("plugin/models/group",[],function(){return Backbone.Model.extend({defaults:{key:"Data label",date:""},reset:function(){this.clear({silent:!0}).set(this.defaults),this.trigger("reset",this)}})}),define("plugin/models/groups",["plugin/models/group"],function(e){return Backbone.Collection.extend({model:e})}),define("plugin/models/chart",["plugin/models/groups"],function(e){return Backbone.Model.extend({defaults:{id:null,title:"",type:"",date:null,state:"",state_info:"",modified:!1,dataset_id:"",dataset_id_job:""},initialize:function(t){this.groups=new e,this.settings=new Backbone.Model},reset:function(){this.clear({silent:!0}).set(this.defaults),this.groups.reset(),this.settings.clear(),this.trigger("reset",this)},copy:function(e){var t=this;t.clear({silent:!0}).set(this.defaults),t.set(e.attributes),t.settings=e.settings.clone(),t.groups.reset(),e.groups.each(function(e){t.groups.add(e.clone())}),t.trigger("change",t)},state:function(e,t){this.set("state",e),this.set("state_info",t),this.trigger("set:state"),console.debug("Chart:state() - "+t+" ("+e+")")}})});var Visualization=Backbone.Model.extend({defaults:{config:{}},urlRoot:function(){var e="/api/visualizations";return window.galaxy_config&&galaxy_config.root?galaxy_config.root+e:e},initialize:function(e){_.isObject(e.config)&&_.isObject(this.defaults.config)&&_.defaults(e.config,this.defaults.config),this._setUpListeners()},_setUpListeners:function(){},set:function(e,t){if("config"===e){var n=this.get("config");_.isObject(n)&&(t=_.extend(_.clone(n),t))}return Backbone.Model.prototype.set.call(this,e,t),this},toString:function(){var e=this.get("id")||"";return this.get("title")&&(e+=":"+this.get("title")),"Visualization("+e+")"}}),VisualizationCollection=Backbone.Collection.extend({model:Visualization,url:function(){return galaxy_config.root+"api/visualizations"},initialize:function(e,t){t=t||{}},set:function(e,t){var n=this;e=_.map(e,function(e){var t=n.get(e.id);if(!t)return e;var r=t.toJSON();return _.extend(r,e),r}),Backbone.Collection.prototype.set.call(this,e,t)},toString:function(){return["VisualizationCollection(",[this.historyId,this.length].join(),")"].join("")}});define("mvc/visualization/visualization-model",function(){}),define("plugin/library/storage",["utils/utils","plugin/models/chart","plugin/models/group","mvc/visualization/visualization-model"],function(e,t,n){return Backbone.Model.extend({vis:null,initialize:function(e){this.app=e,this.chart=this.app.chart,this.options=this.app.options,this.id=this.options.id,this.vis=new Visualization({type:"charts",config:{dataset_id:this.options.config.dataset_id,chart_dict:{}}}),this.id&&(this.vis.id=this.id);var t=this.options.config.chart_dict;t&&(this.vis.get("config").chart_dict=t)},save:function(){var e=this.app.chart;this.vis.get("config").chart_dict={};var t=e.get("title");t!=""&&this.vis.set("title",t);var n={attributes:e.attributes,settings:e.settings.attributes,groups:[]};e.groups.each(function(e){n.groups.push(e.attributes)}),this.vis.get("config").chart_dict=n;var r=this;this.vis.save().fail(function(e,t,n){console.error(e,t,n)}).then(function(e){e&&e.id&&(r.id=e.id)})},load:function(){var e=this.vis.get("config").chart_dict;if(!e.attributes)return!1;var t=e.attributes.type;if(!t)return console.debug("Storage::load() - Chart type not provided. Invalid format."),!1;var r=this.app.types.get(t);if(!r)return console.debug("Storage::load() - Chart type not supported. Please re-configure the chart. Resetting chart."),!1;console.debug("Storage::load() - Loading chart type "+t+"."),this.chart.definition=r,this.chart.set(e.attributes),this.chart.state("ok","Loading saved visualization..."),this.chart.settings.set(e.settings);for(var i in e.groups)this.chart.groups.add(new n(e.groups[i]));return this.chart.set("modified",!1),!0}})}),define("utils/deferred",["utils/utils"],function(e){return Backbone.Model.extend({initialize:function(){this.active={},this.last=null},execute:function(t){var n=this,r=e.uid(),i=t.length>0;this.active[r]=!0;var s=$.Deferred();s.promise().always(function(){delete n.active[r],i&&Galaxy.emit.debug("deferred::execute()",this.state().charAt(0).toUpperCase()+this.state().slice(1)+" "+r)}),$.when(this.last).always(function(){n.active[r]?(i&&Galaxy.emit.debug("deferred::execute()","Running "+r),t(s),!i&&s.resolve()):s.reject()}),this.last=s.promise()},reset:function(){Galaxy.emit.debug("deferred::execute()","Reset");for(var e in 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j;L={};for(j in k)k[j]instanceof Array?L[j]=k[j].slice(0):L[j]=k[j]}if(!e||!e.length||!e.filter(function(e){return e.values.length}).length){var F=T.selectAll(".nv-noData").data([O]);return F.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),F.attr("x",a.left+C/2).attr("y",a.top+M/2).text(function(e){return e}),B}T.selectAll(".nv-noData").remove(),h=t.xScale(),p=t.yScale(),_=_||h,D=D||p;var I=T.selectAll("g.nv-wrap.nv-scatterChart").data([e]),q=I.enter().append("g").attr("class","nvd3 nv-wrap nv-scatterChart nv-chart-"+t.id()),R=q.append("g"),U=I.select("g");R.append("rect").attr("class","nvd3 nv-background").style("pointer-events","none"),R.append("g").attr("class","nv-x nv-axis"),R.append("g").attr("class","nv-y 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+define("mvc/ui/ui-modal",[],function(){var e=Backbone.View.extend({optionsDefault:{container:"body",title:"ui-modal",cls:"ui-modal",body:"",backdrop:!0,height:null,width:null,closing_events:!1,closing_callback:null,title_separator:!0},buttonList:{},initialize:function(e){this.setElement(this._template()),this.options=_.defaults(e||{},this.optionsDefault),$(this.options.container).prepend(this.el),this.$header=this.$(".modal-header"),this.$dialog=this.$(".modal-dialog"),this.$body=this.$(".modal-body"),this.$footer=this.$(".modal-footer"),this.$backdrop=this.$(".modal-backdrop"),this.$buttons=this.$(".buttons"),e&&this.render()},show:function(e){if(e&&(this.options=_.defaults(e,this.optionsDefault),this.render()),!this.visible&&(this.visible=!0,this.$el.fadeIn("fast"),this.options.closing_events)){var t=this;$(document).on("keyup.ui-modal",function(e){27==e.keyCode&&t.hide(!0)}),this.$backdrop.on("click",function(){t.hide(!0)})}},hide:function(e){this.visible=!1,this.$el.fadeOut("fast"),this.options.closing_callback&&this.options.closing_callback(e),$(document).off("keyup.ui-modal"),this.$backdrop.off("click")},render:function(){var e=this;if("progress"==this.options.body&&(this.options.body=$('<div class="progress progress-striped active"><div class="progress-bar progress-bar-info" style="width:100%"/></div>')),this.$el.removeClass().addClass("modal").addClass(this.options.cls),this.$header.find(".title").html(this.options.title),this.$body.html(this.options.body),this.$buttons.empty(),this.buttonList={},this.options.buttons){var t=0;$.each(this.options.buttons,function(n,r){var i=$("<button/>").attr("id","button-"+t++).text(n).click(r);e.$buttons.append(i).append("&nbsp;"),e.buttonList[n]=i})}else this.$footer.hide();this.$backdrop[this.options.backdrop&&"addClass"||"removeClass"]("in"),this.$header[!this.options.title_separator&&"addClass"||"removeClass"]("no-separator"),this.options.height?(this.$body.css("height",this.options.height),this.$body.css("overflow","hidden")):this.$body.css("max-height",$(window).height()/2),this.options.width&&this.$dialog.css("width",this.options.width)},getButton:function(e){return this.buttonList[e]},enableButton:function(e){this.getButton(e).prop("disabled",!1)},disableButton:function(e){this.getButton(e).prop("disabled",!0)},showButton:function(e){this.getButton(e).show()},hideButton:function(e){this.getButton(e).hide()},scrollTop:function(){return this.$body.scrollTop()},_template:function(){return'<div class="ui-modal"><div class="modal-backdrop fade"/><div class="modal-dialog"><div class="modal-content"><div class="modal-header"><h4 class="title"/></div><div class="modal-body"/><div class="modal-footer"><div class="buttons"/></div></div></div></div>'}});return{View:e}}),define("utils/utils",[],function(){function e(e){return'<iframe src="'+e+'" frameborder="0" style="width: 100%; height: 100%;"/>'}function t(e,n){for(var r in e){var i=e[r];if(_.isObject(i)){var s=n(i);s&&(e[r]=s),t(i,n)}}}function n(e){return/^[\],:{}\s]*$/.test(e.replace(/\\["\\\/bfnrtu]/g,"@").replace(/"[^"\\\n\r]*"|true|false|null|-?\d+(?:\.\d*)?(?:[eE][+\-]?\d+)?/g,"]").replace(/(?:^|:|,)(?:\s*\[)+/g,""))}function r(e){return $("<div/>").text(e).html()}function i(e){if(e instanceof Array||(e=[e]),0===e.length)return!1;for(var t in e)if(["__null__","__undefined__",null,void 0].indexOf(e[t])>-1)return!1;return!0}function s(e){var e=e.toString();if(e){e=e.replace(/,/g,", ");var t=e.lastIndexOf(", ");return-1!=t&&(e=e.substr(0,t)+" or "+e.substr(t+1)),e}return""}function o(e){top.__utils__get__=top.__utils__get__||{},e.cache&&top.__utils__get__[e.url]?(e.success&&e.success(top.__utils__get__[e.url]),console.debug("utils.js::get() - Fetching from cache ["+e.url+"].")):u({url:e.url,data:e.data,success:function(t){top.__utils__get__[e.url]=t,e.success&&e.success(t)},error:function(t){e.error&&e.error(t)}})}function u(e){var t={contentType:"application/json",type:e.type||"GET",data:e.data||{},url:e.url};"GET"==t.type||"DELETE"==t.type?(t.url+=-1==t.url.indexOf("?")?"?":"&",t.url=t.url+$.param(t.data,!0),t.data=null):(t.dataType="json",t.url=t.url,t.data=JSON.stringify(t.data)),$.ajax(t).done(function(t){if("string"==typeof t)try{t=t.replace("Infinity,",'"Infinity",'),t=jQuery.parseJSON(t)}catch(n){console.debug(n)}e.success&&e.success(t)}).fail(function(t){var n=null;try{n=jQuery.parseJSON(t.responseText)}catch(r){n=t.responseText}e.error&&e.error(n,t)}).always(function(){e.complete&&e.complete()})}function a(e,t){var n=$('<div class="'+e+'"></div>');n.appendTo(":eq(0)");var r=n.css(t);return n.remove(),r}function f(e){$('link[href^="'+e+'"]').length||$('<link href="'+Galaxy.root+e+'" rel="stylesheet">').appendTo("head")}function l(e,t){return e?_.defaults(e,t):t}function c(e,t){for(var n=1,r=0;t>r;r++)n*=10;return Math.round(e*n)/n}function h(e,t,n){n=void 0!==n?n:1;var r="";if(e>=y)e/=y,r="TB";else if(e>=g)e/=g,r="GB";else if(e>=m)e/=m,r="MB";else if(e>=v)e/=v,r="KB";else{if(!(e>0))return t?"0 b":"<strong>-</strong>";r="b"}var i="b"==r?e:c(e,n);return t?i+" "+r:"<strong>"+i+"</strong> "+r}function p(){return top.__utils__uid__=top.__utils__uid__||0,"uid-"+top.__utils__uid__++}function d(){var e=new Date,t=(e.getHours()<10?"0":"")+e.getHours(),n=(e.getMinutes()<10?"0":"")+e.getMinutes();return datetime=e.getDate()+"/"+(e.getMonth()+1)+"/"+e.getFullYear()+", "+t+":"+n}var v=1024,m=v*v,g=m*v,y=g*v;return{cssLoadFile:f,cssGetAttribute:a,get:o,merge:l,iframe:e,bytesToString:h,uid:p,time:d,request:u,sanitize:r,textify:s,validate:i,deepeach:t,isJSON:n}}),define("mvc/ui/ui-portlet",["utils/utils"],function(e){var t=Backbone.View.extend({visible:!1,initialize:function(t){var n=this;this.options=e.merge(t,{id:e.uid(),title:"",icon:"",buttons:null,body:null,scrollable:!0,nopadding:!1,operations:null,placement:"bottom",cls:"ui-portlet",operations_flt:"right",collapsible:!1,collapsed:!1}),this.setElement(this._template(this.options)),this.$body=this.$(".portlet-body"),this.$title=this.$(".portlet-title-text"),this.$header=this.$(".portlet-header"),this.$content=this.$(".portlet-content"),this.$footer=this.$(".portlet-footer"),this.options.nopadding&&(this.$content.css("padding","0px"),this.$body.css("padding","0px")),this.$buttons=this.$(".portlet-buttons"),this.options.buttons?$.each(this.options.buttons,function(e,t){t.$el.prop("id",e),n.$buttons.append(t.$el)}):this.$buttons.remove(),this.$operations=this.$(".portlet-operations"),this.options.operations&&$.each(this.options.operations,function(e,t){t.$el.prop("id",e),n.$operations.append(t.$el)}),this.options.body&&this.append(this.options.body),this.collapsed=!1,this.options.collapsible&&(this.$title.addClass("no-highlight").css({cursor:"pointer","text-decoration":"underline"}),this.$title.on("click",function(){n.collapsed?n.expand():n.collapse()}),this.options.collapsed&&this.collapse())},append:function(e){this.$body.append(e)},empty:function(){this.$body.empty()},header:function(){return this.$header},body:function(){return this.$body},footer:function(){return this.$footer},show:function(){this.visible=!0,this.$el.fadeIn("fast")},hide:function(){this.visible=!1,this.$el.fadeOut("fast")},enableButton:function(e){this.$buttons.find("#"+e).prop("disabled",!1)},disableButton:function(e){this.$buttons.find("#"+e).prop("disabled",!0)},hideOperation:function(e){this.$operations.find("#"+e).hide()},showOperation:function(e){this.$operations.find("#"+e).show()},setOperation:function(e,t){var n=this.$operations.find("#"+e);n.off("click"),n.on("click",t)},title:function(e){var t=this.$title;return e&&t.html(e),t.html()},collapse:function(){this.collapsed=!0,this.$content.height("0%"),this.$body.hide(),this.$footer.hide(),this.trigger("collapsed")},expand:function(){this.collapsed=!1,this.$content.height("100%"),this.$body.fadeIn("fast"),this.$footer.fadeIn("fast"),this.trigger("expanded")},disable:function(){this.$(".portlet-backdrop").show()},enable:function(){this.$(".portlet-backdrop").hide()},_template:function(e){var t='<div id="'+e.id+'" class="'+e.cls+'">';return e.title&&(t+='<div class="portlet-header"><div class="portlet-operations" style="float: '+e.operations_flt+';"/><div class="portlet-title">',e.icon&&(t+='<i class="icon fa '+e.icon+'">&nbsp;</i>'),t+='<span class="portlet-title-text">'+e.title+"</span></div></div>"),t+='<div class="portlet-content">',"top"==e.placement&&(t+='<div class="portlet-buttons"/>'),t+='<div class="portlet-body"/>',"bottom"==e.placement&&(t+='<div class="portlet-buttons"/>'),t+='</div><div class="portlet-footer"/><div class="portlet-backdrop"/></div>'}});return{View:t}}),define("mvc/ui/ui-buttons",["utils/utils"],function(e){var t=Backbone.View.extend({initialize:function(t){this.options=e.merge(t,{id:e.uid(),title:"",floating:"right",icon:"",cls:"ui-button btn btn-default",cls_wait:"btn btn-info"}),this.setElement(this._template(this.options));var n=this;$(this.el).on("click",function(){$(".tooltip").hide(),t.onclick&&!n.disabled&&t.onclick()}),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},disable:function(){this.$el.addClass("disabled"),this.disabled=!0},enable:function(){this.$el.removeClass("disabled"),this.disabled=!1},wait:function(){this.$el.removeClass(this.options.cls).addClass(this.options.cls_wait).prop("disabled",!0),this.$(".icon").removeClass(this.options.icon).addClass("fa-spinner fa-spin"),this.$(".title").html("Sending...")},unwait:function(){this.$el.removeClass(this.options.cls_wait).addClass(this.options.cls).prop("disabled",!1),this.$(".icon").removeClass("fa-spinner fa-spin").addClass(this.options.icon),this.$(".title").html(this.options.title)},_template:function(e){var t='<button id="'+e.id+'" type="submit" style="float: '+e.floating+';" type="button" class="'+e.cls+'">';return e.icon&&(t+='<i class="icon fa '+e.icon+'"/>&nbsp;'),t+='<span class="title">'+e.title+"</span></button>"}}),n=t.extend({initialize:function(e){t.prototype.initialize.call(this,e)},_template:function(e){return'<a id="'+e.id+'" class="'+e.cls+'" href="'+(e.href||"javascript:void(0)")+'" title="'+e.title+'" target="'+(e.target||"_top")+'"><span class="'+e.icon+'"/></a>'}}),r=Backbone.View.extend({initialize:function(t){this.options=e.merge(t,{title:"Select/Unselect all",icons:["fa fa-square-o","fa fa-minus-square-o","fa fa-check-square-o"],value:0}),this.setElement(this._template()),this.$title=this.$(".title"),this.$icon=this.$(".icon"),this.value(this.options.value),this.$title.html(this.options.title);var n=this;this.$el.on("click",function(){n.current=0===n.current&&2||0,n.value(n.current),n.options.onclick&&n.options.onclick()})},value:function(e,t){return void 0!==e&&(t&&0!==e&&(e=e!==t&&1||2),this.current=e,this.$icon.removeClass().addClass("icon").addClass(this.options.icons[e]),this.options.onchange&&this.options.onchange(e)),this.current},_template:function(){return'<div class="ui-button-check" ><span class="icon"/><span class="title"/></div>'}}),i=Backbone.View.extend({initialize:function(t){this.options=e.merge(t,{id:e.uid(),title:"",floating:"right",cls:"ui-button-icon",icon:"",tooltip:"",onclick:null}),this.setElement(this._template(this.options)),this.$button=this.$el.find(".button");var n=this;$(this.el).on("click",function(){$(".tooltip").hide(),t.onclick&&!n.disabled&&t.onclick()}),this.$button.tooltip({title:t.tooltip,placement:"bottom"})},disable:function(){this.$button.addClass("disabled"),this.disabled=!0},enable:function(){this.$button.removeClass("disabled"),this.disabled=!1},setIcon:function(e){this.$("i").removeClass(this.options.icon).addClass(e),this.options.icon=e},_template:function(e){var t="";e.title&&(t="width: auto;");var n='<div id="'+e.id+'" style="float: '+e.floating+"; "+t+'" class="'+e.cls+'"><div class="button">';return n+=e.title?'<i class="icon fa '+e.icon+'"/>&nbsp;<span class="title">'+e.title+"</span>":'<i class="icon fa '+e.icon+'"/>',n+="</div></div>"}}),s=Backbone.View.extend({$menu:null,initialize:function(t){this.options=e.merge(t,{id:"",title:"",floating:"right",pull:"right",icon:null,onclick:null,cls:"ui-button-icon ui-button-menu",tooltip:"",target:"",href:"",onunload:null,visible:!0,tag:""}),this.setElement($(this._template(this.options)));var n=$(this.el).find(".root"),r=this;n.on("click",function(e){$(".tooltip").hide(),e.preventDefault(),r.options.onclick&&r.options.onclick()}),this.options.visible||this.hide(),n.tooltip({title:t.tooltip,placement:"bottom"})},show:function(){$(this.el).show()},hide:function(){$(this.el).hide()},addMenu:function(t){var n={title:"",target:"",href:"",onclick:null,divider:!1,icon:null,cls:"button-menu btn-group"};n=e.merge(t,n),this.$menu||($(this.el).append(this._templateMenu()),this.$menu=$(this.el).find(".menu"));var r=$(this._templateMenuItem(n));r.on("click",function(e){n.onclick&&(e.preventDefault(),n.onclick())}),this.$menu.append(r),n.divider&&this.$menu.append($(this._templateDivider()))},_templateMenuItem:function(e){var t='<li><a class="dropdown-item" href="'+e.href+'" target="'+e.target+'" ';return e.download&&(t+='download="'+e.download+'"'),t+=">",e.icon&&(t+='<i class="fa '+e.icon+'"/>'),t+=" "+e.title+"</a></li>"},_templateMenu:function(){return'<ul class="menu dropdown-menu pull-'+this.options.pull+'" role="menu"/>'},_templateDivider:function(){return'<li class="divider"/>'},_template:function(e){var t="",n="";e.title?t="width: auto;":n="margin: 0px;";var r='<div id="'+e.id+'" style="float: '+e.floating+"; "+t+'" class="dropdown '+e.cls+'"><div class="root button dropdown-toggle" data-toggle="dropdown" style="'+n+'"><i class="icon fa '+e.icon+'"/>';return e.title&&(r+='&nbsp;<span class="title">'+e.title+"</span>"),r+="</div></div>"}});return{ButtonDefault:t,ButtonLink:n,ButtonIcon:i,ButtonCheck:r,ButtonMenu:s}}),define("mvc/ui/ui-select-default",["utils/utils","mvc/ui/ui-buttons"],function(e,t){var n=Backbone.View.extend({optionsDefault:{id:e.uid(),cls:"ui-select",error_text:"No options available",empty_text:"Nothing selected",visible:!0,wait:!1,multiple:!1,searchable:!0,optional:!1},initialize:function(n){var r=this;this.model=new Backbone.Model,this.options=e.merge(n,this.optionsDefault),this.setElement(this._template(this.options)),this.$select=this.$el.find(".select"),this.$icon_dropdown=this.$el.find(".icon-dropdown"),this.$icon_dropdown.on("click",function(){r.$select.select2&&r.$select.select2("open")});var i=null;this.$(".icon-resize").on("mousedown",function(e){var t=e.pageY,n=r.$select.height();i=i||n,$("#dd-helper").show().on("mousemove",function(e){r.$select.height(Math.max(n+(e.pageY-t),i))}).on("mouseup mouseleave",function(){$("#dd-helper").hide().off()})}),this.options.multiple&&(this.options.searchable?(this.all_button=new t.ButtonCheck({onclick:function(){var e=[];0!==r.all_button.value()&&(e=r._availableOptions()),r.value(e),r.trigger("change")}}),this.$el.prepend(this.all_button.$el)):this.$el.addClass("ui-select-multiple"),this.$select.prop("multiple",!0),this.$icon_dropdown.remove()),this.update(this.options.data),void 0!==this.options.value&&this.value(this.options.value),this.options.visible||this.hide(),this.options.wait?this.wait():this.show(),this.$select.on("change",function(){r.trigger("change")}),this.on("change",function(){r.options.onchange&&r.options.onchange(this.value())})},value:function(e){void 0!==e&&(null===e&&(e="__null__"),(this.exists(e)||this.options.multiple)&&(this.$select.val(e),this.$select.select2&&this.$select.select2("val",e)));var t=this._getValue();return this.all_button&&this.all_button.value($.isArray(t)&&t.length||0,this._size()),t},first:function(){var e=this.$select.find("option").first();return e.length>0?e.val():null},text:function(){return this.$select.find("option:selected").text()},show:function(){this.unwait(),this.$select.show(),this.$el.show()},hide:function(){this.$el.hide()},wait:function(){this.$icon_dropdown.removeClass(),this.$icon_dropdown.addClass("icon-dropdown fa fa-spinner fa-spin")},unwait:function(){this.$icon_dropdown.removeClass(),this.$icon_dropdown.addClass("icon-dropdown fa fa-caret-down")},disabled:function(){return this.$select.is(":disabled")},enable:function(){this.$select.prop("disabled",!1)},disable:function(){this.$select.prop("disabled",!0)},add:function(e,t){_.each(this.model.get("options"),function(t){!_.findWhere(e,t)&&e.push(t)}),t&&e.sort(t),this.update(e)},update:function(e){var t=this._getValue();this.$select.find("option").remove(),!this.options.multiple&&this.options.optional&&this.$select.append(this._templateOption({value:"__null__",label:this.options.empty_text})),this.model.set("options",e);for(var n in e)this.$select.append(this._templateOption(e[n]));0==this._size()?(this.disable(),this.$select.append(this._templateOption({value:"__null__",label:this.options.error_text}))):this.enable(),this.options.searchable&&(this.$select.select2("destroy"),this.$select.select2({closeOnSelect:!this.options.multiple}),this.$(".select2-container .select2-search input").off("blur")),this.value(t),null!==this._getValue()||this.options.multiple&&this.options.optional||this.value(this.first())},setOnChange:function(e){this.options.onchange=e},exists:function(e){return this.$select.find('option[value="'+e+'"]').length>0},_getValue:function(){var t=this.$select.val();return e.validate(t)?t:null},_availableOptions:function(){var e=[];return this.$select.find("option").each(function(t,n){e.push($(n).attr("value"))}),e},_size:function(){return this.$select.find("option").length},_templateOption:function(e){return'<option value="'+e.value+'">'+_.escape(e.label)+"</option>"},_template:function(e){return'<div id="'+e.id+'" class="'+e.cls+'"><select id="'+e.id+'_select" class="select"/><div class="icon-dropdown"/><div class="icon-resize"><i class="fa fa-angle-double-right fa-rotate-45"/></div></div>'}});return{View:n}}),define("mvc/ui/ui-slider",["utils/utils"],function(e){var t=Backbone.View.extend({initialize:function(t){var n=this;this.options=e.merge(t,{id:e.uid(),min:null,max:null,step:null,precise:!1,split:1e4}),this.setElement(this._template(this.options)),this.useslider=null!==this.options.max&&null!==this.options.min&&this.options.max>this.options.min,null===this.options.step&&(this.options.step=1,this.options.precise&&this.useslider&&(this.options.step=(this.options.max-this.options.min)/this.options.split)),this.useslider?(this.$slider=this.$("#slider"),this.$slider.slider(this.options),this.$slider.on("slide",function(e,t){n.value(t.value)})):this.$(".ui-form-slider-text").css("width","100%"),this.$text=this.$("#text"),void 0!==this.options.value&&this.value(this.options.value);var r=[];this.$text.on("change",function(){n.value($(this).val())}),this.$text.on("keyup",function(e){r[e.which]=!1,n.options.onchange&&n.options.onchange($(this).val())}),this.$text.on("keydown",function(e){var t=e.which;r[t]=!0,n.options.is_workflow&&r[16]&&52==t?(n.value("$"),event.preventDefault()):8==t||9==t||13==t||37==t||39==t||t>=48&&57>=t&&!r[16]||t>=96&&105>=t||(190==t||110==t)&&-1==$(this).val().indexOf(".")&&n.options.precise||(189==t||109==t)&&-1==$(this).val().indexOf("-")||n._isParameter($(this).val())||r[91]||r[17]||event.preventDefault()})},value:function(e){return void 0!==e&&(null===e||""===e||this._isParameter(e)||(isNaN(e)&&(e=0),null!==this.options.max&&(e=Math.min(e,this.options.max)),null!==this.options.min&&(e=Math.max(e,this.options.min))),this.$slider&&this.$slider.slider("value",e),this.$text.val(e),this.options.onchange&&this.options.onchange(e)),this.$text.val()},_isParameter:function(e){return this.options.is_workflow&&"$"===String(e).substring(0,1)},_template:function(e){return'<div id="'+e.id+'" class="ui-form-slider"><input id="text" type="text" class="ui-form-slider-text"/><div id="slider" class="ui-form-slider-element"/></div>'}});return{View:t}}),define("mvc/ui/ui-options",["utils/utils","mvc/ui/ui-buttons"],function(e,t){var n=Backbone.View.extend({initialize:function(n){var r=this;this.options=e.merge(n,{visible:!0,data:[],id:e.uid(),error_text:"No options available.",wait_text:"Please wait...",multiple:!1}),this.setElement('<div class="ui-options"/>'),this.$message=$("<div/>"),this.$options=$(this._template(n)),this.$menu=$('<div class="ui-options-menu"/>'),this.$el.append(this.$message),this.$el.append(this.$menu),this.$el.append(this.$options),this.options.multiple&&(this.all_button=new t.ButtonCheck({onclick:function(){r.$("input").prop("checked",0!==r.all_button.value()),r.trigger("change")}}),this.$menu.append(this.all_button.$el)),this.options.visible||this.$el.hide(),this.update(this.options.data),void 0!==this.options.value&&this.value(this.options.value),this.on("change",function(){this.options.onchange&&this.options.onchange(this.value())})},update:function(e){var t=this._getValue();if(this.$options.empty(),this._templateOptions)this.$options.append(this._templateOptions(e));else for(var n in e){var r=$(this._templateOption(e[n]));r.addClass("ui-option"),r.tooltip({title:e[n].tooltip,placement:"bottom"}),this.$options.append(r)}var i=this;this.$("input").on("change",function(){i.value(i._getValue()),i.trigger("change")}),this.value(t),this.unwait()},value:function(e){if(void 0!==e&&(this.$("input").prop("checked",!1),null!==e)){e instanceof Array||(e=[e]);for(var t in e)this.$('input[value="'+e[t]+'"]').first().prop("checked",!0)}var n=this._getValue();if(this.all_button){var r=n;r=r instanceof Array?r.length:0,this.all_button.value(r,this._size())}return n},exists:function(e){if(void 0!==e){e instanceof Array||(e=[e]);for(var t in e)if(this.$('input[value="'+e[t]+'"]').length>0)return!0}return!1},first:function(){var e=this.$("input").first();return e.length>0?e.val():null},wait:function(){0==this._size()&&(this._messageShow(this.options.wait_text,"info"),this.$options.hide(),this.$menu.hide())},unwait:function(){var e=this._size();0==e?(this._messageShow(this.options.error_text,"danger"),this.$options.hide(),this.$menu.hide()):(this._messageHide(),this.$options.css("display","inline-block"),this.$menu.show())},_getValue:function(){var t=[];return this.$(":checked").each(function(){t.push($(this).val())}),e.validate(t)?this.options.multiple?t:t[0]:null},_size:function(){return this.$(".ui-option").length},_messageShow:function(e,t){this.$message.show(),this.$message.removeClass(),this.$message.addClass("ui-message alert alert-"+t),this.$message.html(e)},_messageHide:function(){this.$message.hide()},_template:function(){return'<div class="ui-options-list"/>'}}),r=n.extend({_templateOption:function(t){var n=e.uid();return'<div class="ui-option"><input id="'+n+'" type="'+this.options.type+'" name="'+this.options.id+'" value="'+t.value+'"/><label class="ui-options-label" for="'+n+'">'+t.label+"</label></div>"}}),i={};i.View=r.extend({initialize:function(e){e.type="radio",r.prototype.initialize.call(this,e)}});var s={};s.View=r.extend({initialize:function(e){e.multiple=!0,e.type="checkbox",r.prototype.initialize.call(this,e)}});var o={};return o.View=n.extend({initialize:function(e){n.prototype.initialize.call(this,e)},value:function(e){return void 0!==e&&(this.$("input").prop("checked",!1),this.$("label").removeClass("active"),this.$('[value="'+e+'"]').prop("checked",!0).closest("label").addClass("active")),this._getValue()},_templateOption:function(e){var t="fa "+e.icon;e.label||(t+=" no-padding");var n='<label class="btn btn-default">';return e.icon&&(n+='<i class="'+t+'"/>'),n+='<input type="radio" name="'+this.options.id+'" value="'+e.value+'"/>',e.label&&(n+=e.label),n+="</label>"},_template:function(){return'<div class="btn-group ui-radiobutton" data-toggle="buttons"/>'}}),{Base:n,BaseIcons:r,Radio:i,RadioButton:o,Checkbox:s}}),define("mvc/ui/ui-drilldown",["utils/utils","mvc/ui/ui-options"],function(e,t){var n=t.BaseIcons.extend({initialize:function(e){e.type=e.display||"checkbox",e.multiple="checkbox"==e.display,t.BaseIcons.prototype.initialize.call(this,e),this.initial=!0},value:function(e){var n=t.BaseIcons.prototype.value.call(this,e);if(this.initial&&null!==n&&this.header_index){this.initial=!1;var r=n;$.isArray(r)||(r=[r]);for(var i in r){var s=this.header_index[r[i]];for(var o in s)this._setState(s[o],!0)}}return n},_setState:function(e,t){var n=this.$(".button-"+e),r=this.$(".subgroup-"+e);n.data("is_expanded",t),t?(r.fadeIn("fast"),n.removeClass("fa-plus-square"),n.addClass("fa-minus-square")):(r.hide(),n.removeClass("fa-minus-square"),n.addClass("fa-plus-square"))},_templateOptions:function(t){function n(e,t){var n=e.find(".button-"+t);n.on("click",function(){s._setState(t,!n.data("is_expanded"))})}function r(t,o,u){u=u||[];for(i in o){var f=o[i],l=f.options.length>0,h=u.slice(0);s.header_index[f.value]=h.slice(0);var p=$("<div/>");if(l){var v=e.uid(),m=$('<span class="button-'+v+' ui-drilldown-button fa fa-plus-square"/>'),g=$('<div class="subgroup-'+v+'" style="display: none; margin-left: 25px;"/>');h.push(v);var y=$("<div/>");y.append(m),y.append(s._templateOption({label:f.name,value:f.value})),p.append(y),r(g,f.options,h),p.append(g),n(p,v)}else p.append(s._templateOption({label:f.name,value:f.value}));t.append(p)}}var s=this;this.header_index={};var o=$("<div/>");return r(o,t),o},_template:function(e){return'<div class="ui-options-list drilldown-container" id="'+e.id+'"/>'}});return{View:n}}),define("mvc/ui/ui-misc",["utils/utils","mvc/ui/ui-select-default","mvc/ui/ui-slider","mvc/ui/ui-options","mvc/ui/ui-drilldown","mvc/ui/ui-buttons","mvc/ui/ui-modal"],function(e,t,n,r,i,s,o){var u=Backbone.View.extend({initialize:function(t){this.options=e.merge(t,{url:"",cls:""}),this.setElement(this._template(this.options))},_template:function(e){return'<img class="ui-image '+e.cls+'" src="'+e.url+'"/>'}}),a=Backbone.View.extend({initialize:function(t){this.options=e.merge(t,{title:"",cls:"",tagname:"label"}),this.setElement(this._template(this.options))},title:function(e){this.$el.html(e)},value:function(){return options.title},_template:function(e){return $("<"+e.tagname+"/>").addClass("ui-label").addClass(e.cls).html(e.title)}}),f=Backbone.View.extend({initialize:function(t){this.options=e.merge(t,{floating:"right",icon:"",tooltip:"",placement:"bottom",title:"",cls:""}),this.setElement(this._template(this.options)),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},_template:function(e){return'<div><span class="fa '+e.icon+'" class="ui-icon"/>&nbsp;'+e.title+"</div>"}}),l=Backbone.View.extend({initialize:function(t){this.options=e.merge(t,{title:"",cls:""}),this.setElement(this._template(this.options)),$(this.el).on("click",t.onclick)},_template:function(e){return'<div><a href="javascript:void(0)" class="ui-anchor '+e.cls+'">'+e.title+"</a></div>"}}),c=Backbone.View.extend({initialize:function(t){this.options=e.merge(t,{message:null,status:"info",cls:"",persistent:!1}),this.setElement('<div class="'+this.options.cls+'"/>'),this.options.message&&this.update(this.options)},update:function(t){if(this.options=e.merge(t,this.options),""!=t.message){if(this.$el.html(this._template(this.options)),this.$el.fadeIn(),this.timeout&&window.clearTimeout(this.timeout),!t.persistent){var n=this;this.timeout=window.setTimeout(function(){n.$el.is(":visible")?n.$el.fadeOut():n.$el.hide()},3e3)}}else this.$el.fadeOut()},_template:function(e){var t="ui-message alert alert-"+e.status;return e.large&&(t=("success"==e.status&&"done"||"danger"==e.status&&"error"||e.status)+"messagelarge"),'<div class="'+t+'" >'+e.message+"</div>"}}),h=Backbone.View.extend({initialize:function(t){this.options=e.merge(t,{onclick:null,searchword:""}),this.setElement(this._template(this.options));var n=this;this.options.onclick&&this.$el.on("submit",function(){var e=n.$el.find("#search");n.options.onclick(e.val())})},_template:function(e){return'<div class="ui-search"><form onsubmit="return false;"><input id="search" class="form-control input-sm" type="text" name="search" placeholder="Search..." value="'+e.searchword+'"><button type="submit" class="btn search-btn"><i class="fa fa-search"></i></button></form></div>'}}),p=Backbone.View.extend({initialize:function(t){this.options=e.merge(t,{type:"text",placeholder:"",disabled:!1,visible:!0,cls:"",area:!1}),this.setElement(this._template(this.options)),void 0!==this.options.value&&this.value(this.options.value),this.options.disabled&&this.$el.prop("disabled",!0),this.options.visible||this.$el.hide();var n=this;this.$el.on("input",function(){n.options.onchange&&n.options.onchange(n.$el.val())})},value:function(e){return void 0!==e&&this.$el.val("string"==typeof e&&e||""),this.$el.val()},_template:function(e){return e.area?'<textarea id="'+e.id+'" class="ui-textarea '+e.cls+'"></textarea>':'<input id="'+e.id+'" type="'+e.type+'" value="'+e.value+'" placeholder="'+e.placeholder+'" class="ui-input '+e.cls+'">'}}),d=Backbone.View.extend({initialize:function(e){this.options=e,this.setElement(this._template(this.options)),void 0!==this.options.value&&this.value(this.options.value)},value:function(e){return void 0!==e&&this.$("hidden").val(e),this.$("hidden").val()},_template:function(e){var t='<div id="'+e.id+'" >';return e.info&&(t+="<div>"+e.info+"</div>"),t+='<hidden value="'+e.value+'"/></div>'}});return{Anchor:l,Button:s.ButtonDefault,ButtonIcon:s.ButtonIcon,ButtonCheck:s.ButtonCheck,ButtonMenu:s.ButtonMenu,ButtonLink:s.ButtonLink,Icon:f,Image:u,Input:p,Label:a,Message:c,Modal:o,RadioButton:r.RadioButton,Checkbox:r.Checkbox,Radio:r.Radio,Searchbox:h,Select:t,Hidden:d,Slider:n,Drilldown:i}}),define("plugin/library/jobs",["utils/utils"],function(e){return Backbone.Model.extend({initialize:function(t,n){this.app=t,this.options=e.merge(n,this.optionsDefault)},request:function(e,t,n,r,i){var s=this;e.state("wait","Requesting job results...");var o=e.get("dataset_id_job");o!=""?s._wait(e,r,i):s._submit(e,t,n,r,i)},cleanup:function(t){var n=this,r=t.get("dataset_id_job");r!=""&&(e.request({type:"PUT",url:config.root+"api/histories/none/contents/"+r,data:{deleted:!0},success:function(){n._refreshHdas()}}),t.set("dataset_id_job",""))},_submit:function(t,n,r,i,s){var o=this,u=t.id,a=t.get("type"),f=t.definition;data={tool_id:"charts",inputs:{input:{id:t.get("dataset_id"),src:"hda"},module:f.execute,columns:r,settings:n}},t.state("wait","Sending job request..."),e.request({type:"POST",url:config.root+"api/tools",data:data,success:function(e){if(!e.outputs||e.outputs.length==0)t.state("failed","Job submission failed. No response."),s&&s();else{o._refreshHdas();var n=e.outputs[0];t.state("wait","Your job has been queued. You may close the browser window. The job will run in the background."),t.set("dataset_id_job",n.id),o.app.storage.save(),o._wait(t,i,s)}},error:function(e){var n="";e&&e.message&&e.message.data&&e.message.data.input&&(n=e.message.data.input+"."),t.state("failed","This visualization requires the 'charts' tool. Please make sure it is installed. "+n),s&&s()}})},_wait:function(t,n,r){var i=this;e.request({type:"GET",url:config.root+"api/datasets/"+t.get("dataset_id_job"),data:{},success:function(e){var s=!1;switch(e.state){case"ok":t.state("wait","Job completed successfully..."),n&&n(e),s=!0;break;case"error":t.state("failed","Job has failed. Please check the history for details."),r&&r(e),s=!0;break;case"running":t.state("wait","Your job is running. You may close the browser window. The job will continue in the background.")}s||setTimeout(function(){i._wait(t,n,r)},i.app.config.get("query_timeout"))}})},_refreshHdas:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.refreshContents()}})}),define("plugin/library/datasets",["utils/utils"],function(e){return Backbone.Collection.extend({list:{},cache:{},initialize:function(t,n){this.app=t,this.options=e.merge(n,this.optionsDefault)},request:function(e){e.groups?this._get_blocks(e):this._get_dataset(e.id,e.success,e.error)},_get_blocks:function(e){function c(i){l._get(i,function(){var s=!1;for(var o in e.groups){destination_group=e.groups[o],source_group=i.groups[o],destination_group.values||(destination_group.values=[]),destination_group.values=destination_group.values.concat(source_group.values);if(source_group.values.length==0){s=!0;break}}if(++f<u&&!s){n&&n(parseInt(f/u*100));var l=i.start+r;i=$.extend(!0,a,{start:l}),c(i)}else t()})}var t=e.success,n=e.progress,r=this.app.config.get("query_limit"),i=e.start||0,s=i+e.query_limit||i+this.app.config.get("query_limit"),o=Math.abs(s-i);if(o<=0){console.debug("FAILED - Datasets::request() - Invalid query range.");return}var u=Math.ceil(o/r)||1,a=$.extend(!0,{},e),f=0,l=this,h=$.extend(!0,a,{start:i});this._get_dataset(e.id,function(){c(h)})},_get_dataset:function(t,n,r){var i=this.list[t];if(i){n(i);return}var s=this;e.request({type:"GET",url:config.root+"api/datasets/"+t,success:function(e){switch(e.state){case"error":r&&r(e);break;default:s.list[t]=e,n(e)}}})},_block_id:function(e,t){return e.id+"_"+e.start+"_"+e.start+this.app.config.get("query_limit")+"_"+t},_get:function(e,t){e.start=e.start||0;var n=[],r={},i=0;for(var s in e.groups){var o=e.groups[s];for(var u in o.columns){var a=o.columns[u].index,f=this._block_id(e,a);if(this.cache[f]||a==="auto"||a==="zero")continue;!r[a]&&a!==undefined&&(r[a]=i,n.push(a),i++)}}if(n.length==0){this._fill_from_cache(e),t(e);return}var l={dataset_id:e.id,start:e.start,columns:n},c=this;this._fetch(l,function(r){for(var i in r){var s=n[i],o=c._block_id(e,s);c.cache[o]=r[i]}c._fill_from_cache(e),t(e)})},_fill_from_cache:function(e){var t=e.start;console.debug("Datasets::_fill_from_cache() - Filling request from cache at "+t+".");var n=0;for(var r in e.groups){var i=e.groups[r];for(var s in i.columns){var o=i.columns[s],u=this._block_id(e,o.index),a=this.cache[u];a&&(n=Math.max(n,a.length))}}n==0&&console.debug("Datasets::_fill_from_cache() - Reached data range limit.");for(var r in e.groups){var i=e.groups[r];i.values=[];for(var f=0;f<n;f++)i.values[f]={x:parseInt(f)+t}}for(var r in e.groups){var i=e.groups[r];for(var s in i.columns){var o=i.columns[s];switch(o.index){case"auto":for(var f=0;f<n;f++){var l=i.values[f];l[s]=parseInt(f)+t}break;case"zero":for(var f=0;f<n;f++){var l=i.values[f];l[s]=0}break;default:var u=this._block_id(e,o.index),a=this.cache[u];for(var f=0;f<n;f++){var l=i.values[f],c=a[f];isNaN(c)&&!o.is_label&&!o.is_text&&(c=0),l[s]=c}}}}},_fetch:function(t,n){var r=t.start?t.start:0,i=this.app.config.get("query_limit"),s=0;t.columns&&(s=t.columns.length,console.debug("Datasets::_fetch() - Fetching "+s+" column(s) at "+r+".")),s==0&&console.debug("Datasets::_fetch() - No columns requested");var o="";for(var u in t.columns)o+=t.columns[u]+",";o=o.substring(0,o.length-1);var a=this;e.request({type:"GET",url:config.root+"api/datasets/"+t.dataset_id,data:{data_type:"raw_data",provider:"dataset-column",limit:i,offset:r,indeces:o},success:function(e){var t=new Array(s);for(var r=0;r<s;r++)t[r]=[];for(var r in e.data){var i=e.data[r];for(var o in i){var u=i[o];u!==undefined&&u!=2147483647&&t[o].push(u)}}console.debug("Datasets::_fetch() - Fetching complete."),n(t)}})}})}),define("plugin/models/group",[],function(){return Backbone.Model.extend({defaults:{key:"Data label",date:""},reset:function(){this.clear({silent:!0}).set(this.defaults),this.trigger("reset",this)}})}),define("plugin/models/groups",["plugin/models/group"],function(e){return Backbone.Collection.extend({model:e})}),define("plugin/models/chart",["plugin/models/groups"],function(e){return Backbone.Model.extend({defaults:{id:null,title:"",type:"",date:null,state:"",state_info:"",modified:!1,dataset_id:"",dataset_id_job:""},initialize:function(t){this.groups=new e,this.settings=new Backbone.Model},reset:function(){this.clear({silent:!0}).set(this.defaults),this.groups.reset(),this.settings.clear(),this.trigger("reset",this)},copy:function(e){var t=this;t.clear({silent:!0}).set(this.defaults),t.set(e.attributes),t.settings=e.settings.clone(),t.groups.reset(),e.groups.each(function(e){t.groups.add(e.clone())}),t.trigger("change",t)},state:function(e,t){this.set("state",e),this.set("state_info",t),this.trigger("set:state"),console.debug("Chart:state() - "+t+" ("+e+")")}})});var Visualization=Backbone.Model.extend({defaults:{config:{}},urlRoot:function(){var e="api/visualizations";return Galaxy.root+e},initialize:function(e){_.isObject(e.config)&&_.isObject(this.defaults.config)&&_.defaults(e.config,this.defaults.config),this._setUpListeners()},_setUpListeners:function(){},set:function(e,t){if("config"===e){var n=this.get("config");_.isObject(n)&&(t=_.extend(_.clone(n),t))}return Backbone.Model.prototype.set.call(this,e,t),this},toString:function(){var e=this.get("id")||"";return this.get("title")&&(e+=":"+this.get("title")),"Visualization("+e+")"}}),VisualizationCollection=Backbone.Collection.extend({model:Visualization,url:function(){return Galaxy.root+"api/visualizations"},initialize:function(e,t){t=t||{}},set:function(e,t){var n=this;e=_.map(e,function(e){var t=n.get(e.id);if(!t)return e;var r=t.toJSON();return _.extend(r,e),r}),Backbone.Collection.prototype.set.call(this,e,t)},toString:function(){return["VisualizationCollection(",[this.historyId,this.length].join(),")"].join("")}});define("mvc/visualization/visualization-model",function(){}),define("plugin/library/storage",["utils/utils","plugin/models/chart","plugin/models/group","mvc/visualization/visualization-model"],function(e,t,n){return Backbone.Model.extend({vis:null,initialize:function(e){this.app=e,this.chart=this.app.chart,this.options=this.app.options,this.id=this.options.id,this.vis=new Visualization({type:"charts",config:{dataset_id:this.options.config.dataset_id,chart_dict:{}}}),this.id&&(this.vis.id=this.id);var t=this.options.config.chart_dict;t&&(this.vis.get("config").chart_dict=t)},save:function(){var e=this.app.chart;this.vis.get("config").chart_dict={};var t=e.get("title");t!=""&&this.vis.set("title",t);var n={attributes:e.attributes,settings:e.settings.attributes,groups:[]};e.groups.each(function(e){n.groups.push(e.attributes)}),this.vis.get("config").chart_dict=n;var r=this;this.vis.save().fail(function(e,t,n){console.error(e,t,n)}).then(function(e){e&&e.id&&(r.id=e.id)})},load:function(){var e=this.vis.get("config").chart_dict;if(!e.attributes)return!1;var t=e.attributes.type;if(!t)return console.debug("Storage::load() - Chart type not provided. Invalid format."),!1;var r=this.app.types.get(t);if(!r)return console.debug("Storage::load() - Chart type not supported. Please re-configure the chart. Resetting chart."),!1;console.debug("Storage::load() - Loading chart type "+t+"."),this.chart.definition=r,this.chart.set(e.attributes),this.chart.state("ok","Loading saved visualization..."),this.chart.settings.set(e.settings);for(var i in e.groups)this.chart.groups.add(new n(e.groups[i]));return this.chart.set("modified",!1),!0}})}),define("utils/deferred",["utils/utils"],function(e){return Backbone.Model.extend({initialize:function(){this.active={},this.last=null},execute:function(t){var n=this,r=e.uid(),i=t.length>0;this.active[r]=!0;var s=$.Deferred();s.promise().always(function(){delete n.active[r],i&&Galaxy.emit.debug("deferred::execute()",this.state().charAt(0).toUpperCase()+this.state().slice(1)+" "+r)}),$.when(this.last).always(function(){n.active[r]?(i&&Galaxy.emit.debug("deferred::execute()","Running "+r),t(s),!i&&s.resolve()):s.reject()}),this.last=s.promise()},reset:function(){Galaxy.emit.debug("deferred::execute()","Reset");for(var e in this.active)this.active[e]=!1},ready:function(){return $.isEmptyObject(this.active)}})}),define("plugin/views/viewport",["mvc/ui/ui-portlet","mvc/ui/ui-misc","utils/utils"],function(e,t,n){return Backbone.View.extend({container_list:[],canvas_list:[],initialize:function(e,t){this.app=e,this.chart=this.app.chart,this.options=n.merge(t,this.optionsDefault),this.setElement($(this._template())),this._fullscreen(this.$el,50);var r=$("body").css("overflow");this.$el.on("mouseover",function(){$("body").css("overflow","hidden")}).on("mouseout",function(){$("body").css("overflow",r)}),this._createContainer("div");var i=this;this.chart.on("redraw",function(){i.app.deferred.execute(function(e){i._draw(e,i.chart)})}),this.chart.on("set:state",function(){var e=i.$el.find("#info"),t=i.$el.find(".charts-viewport-container"),n=e.find("#icon");n.removeClass(),e.show(),e.find("#text").html(i.chart.get("state_info"));var 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j;L={};for(j in k)k[j]instanceof Array?L[j]=k[j].slice(0):L[j]=k[j]}if(!e||!e.length||!e.filter(function(e){return e.values.length}).length){var F=T.selectAll(".nv-noData").data([O]);return F.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),F.attr("x",a.left+C/2).attr("y",a.top+M/2).text(function(e){return e}),B}T.selectAll(".nv-noData").remove(),h=t.xScale(),p=t.yScale(),_=_||h,D=D||p;var I=T.selectAll("g.nv-wrap.nv-scatterChart").data([e]),q=I.enter().append("g").attr("class","nvd3 nv-wrap nv-scatterChart nv-chart-"+t.id()),R=q.append("g"),U=I.select("g");R.append("rect").attr("class","nvd3 nv-background").style("pointer-events","none"),R.append("g").attr("class","nv-x nv-axis"),R.append("g").attr("class","nv-y 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U=I.select(".nv-stackedWrap").datum(y);U.call(t),p&&(n.scale(b).ticks(D/100).tickSize(-P,0),I.select(".nv-x.nv-axis").attr("transform","translate(0,"+P+")"),I.select(".nv-x.nv-axis").call(n)),d&&(r.scale(w).ticks(t.offset()=="wiggle"?0:P/36).tickSize(-D,0).setTickFormat(t.style()=="expand"||t.style()=="stack_percent"?d3.format("%"):E),I.select(".nv-y.nv-axis").call(r)),t.dispatch.on("areaClick.toggle",function(e){y.filter(function(e){return!e.disabled}).length===1?y.forEach(function(e){e.disabled=!1}):y.forEach(function(t,n){t.disabled=n!=e.seriesIndex}),S.disabled=y.map(function(e){return!!e.disabled}),N.stateChange(S),M.update()}),i.dispatch.on("stateChange",function(e){S.disabled=e.disabled,N.stateChange(S),M.update()}),s.dispatch.on("legendClick",function(e,n){if(!e.disabled)return;R=R.map(function(e){return e.disabled=!0,e}),e.disabled=!1,t.style(e.style),S.style=t.style(),N.stateChange(S),M.update()}),o.dispatch.on("elementMousemove",function(i){t.clearHighlights();var s,a,f,c=[];y.filter(function(e,t){return e.seriesIndex=t,!e.disabled}).forEach(function(n,r){a=e.interactiveBisect(n.values,i.pointXValue,M.x()),t.highlightPoint(r,a,!0);var o=n.values[a];if(typeof o=="undefined")return;typeof s=="undefined"&&(s=o),typeof f=="undefined"&&(f=M.xScale()(M.x()(o,a)));var u=t.style()=="expand"?o.display.y:M.y()(o,a);c.push({key:n.key,value:u,color:l(n,n.seriesIndex),stackedValue:o.display})}),c.reverse();if(c.length>2){var h=M.yScale().invert(i.mouseY),p=Infinity,d=null;c.forEach(function(e,t){h=Math.abs(h);var n=Math.abs(e.stackedValue.y0),r=Math.abs(e.stackedValue.y);if(h>=n&&h<=r+n){d=t;return}}),d!=null&&(c[d].highlight=!0)}var v=n.tickFormat()(M.x()(s,a)),m=t.style()=="expand"?function(e,t){return d3.format(".1%")(e)}:function(e,t){return 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t.dispatch.on("tooltipShow",function(e){e.pos=[e.pos[0]+u.left,e.pos[1]+u.top],N.tooltipShow(e)}),t.dispatch.on("tooltipHide",function(e){N.tooltipHide(e)}),N.on("tooltipHide",function(){g&&e.tooltip.cleanup()}),M.dispatch=N,M.stacked=t,M.legend=i,M.controls=s,M.xAxis=n,M.yAxis=r,M.interactiveLayer=o,d3.rebind(M,t,"x","y","size","xScale","yScale","xDomain","yDomain","xRange","yRange","sizeDomain","interactive","useVoronoi","offset","order","style","clipEdge","forceX","forceY","forceSize","interpolate"),M.options=e.utils.optionsFunc.bind(M),M.margin=function(e){return arguments.length?(u.top=typeof e.top!="undefined"?e.top:u.top,u.right=typeof e.right!="undefined"?e.right:u.right,u.bottom=typeof e.bottom!="undefined"?e.bottom:u.bottom,u.left=typeof e.left!="undefined"?e.left:u.left,M):u},M.width=function(e){return arguments.length?(a=e,M):a},M.height=function(e){return arguments.length?(f=e,M):f},M.color=function(n){return arguments.length?(l=e.utils.getColor(n),i.color(l),t.color(l),M):l},M.showControls=function(e){return arguments.length?(c=e,M):c},M.showLegend=function(e){return arguments.length?(h=e,M):h},M.showXAxis=function(e){return arguments.length?(p=e,M):p},M.showYAxis=function(e){return arguments.length?(d=e,M):d},M.rightAlignYAxis=function(e){return arguments.length?(v=e,r.orient(e?"right":"left"),M):v},M.useInteractiveGuideline=function(e){return arguments.length?(m=e,e===!0&&(M.interactive(!1),M.useVoronoi(!1)),M):m},M.tooltip=function(e){return arguments.length?(y=e,M):y},M.tooltips=function(e){return arguments.length?(g=e,M):g},M.tooltipContent=function(e){return arguments.length?(y=e,M):y},M.state=function(e){return arguments.length?(S=e,M):S},M.defaultState=function(e){return arguments.length?(x=e,M):x},M.noData=function(e){return arguments.length?(T=e,M):T},M.transitionDuration=function(e){return arguments.length?(A=e,M):A},M.controlsData=function(e){return arguments.length?(k=e,M):k},M.controlLabels=function(e){return arguments.length?typeof e!="object"?L:(L=e,M):L},r.setTickFormat=r.tickFormat,r.tickFormat=function(e){return arguments.length?(E=e,r):E},M}}(),define("plugin/plugins/nvd3/nv.d3",function(){}),define("plugin/charts/nvd3/common/config",["plugin/charts/forms/default","plugin/plugins/nvd3/nv.d3"],function(e){return $.extend(!0,{},e,{title:"",category:"",library:"NVD3",tag:"svg",keywords:"small",columns:{tooltip:{title:"Data point labels",is_text:!0,is_numeric:!0,is_auto:!0}}})}),define("plugin/charts/nvd3/bar/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Regular",category:"Bar diagrams",columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/bar_stacked/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Stacked",category:"Bar diagrams",columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/bar_horizontal/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Horizontal",category:"Bar diagrams",settings:{x_axis_type:{init:"hide"}},columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/bar_horizontal_stacked/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Stacked horizontal",category:"Bar diagrams",settings:{x_axis_type:{init:"hide"}},columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/line_focus/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Line with focus",category:"Others",zoomable:"native",columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/pie/config",["plugin/plugins/nvd3/nv.d3"],function(){return $.extend(!0,{},{title:"Pie chart",category:"Area charts",library:"NVD3",tag:"svg",keywords:"small",columns:{label:{title:"Labels",is_label:!0,is_auto:!0},y:{title:"Values",is_numeric:!0}},settings:{main_separator:{type:"separator",title:"Pie chart settings"},donut_ratio:{title:"Donut ratio",info:"Determine how large the donut hole will be.",type:"select",init:"0.5",data:[{label:"50%",value:"0.5"},{label:"25%",value:"0.25"},{label:"10%",value:"0.10"},{label:"0%",value:"0"}]},show_legend:{title:"Show legend",info:"Would you like to add a legend?",type:"radiobutton",init:"false",data:[{label:"Yes",value:"true"},{label:"No",value:"false"}]},label_separator:{type:"separator",title:"Label settings"},label_type:{title:"Donut label",info:"What would you like to show for each slice?",type:"select",init:"percent",data:[{label:"-- Nothing --",value:"hide",hide:"label_outside"},{label:"Label column",value:"key",show:"label_outside"},{label:"Value column",value:"value",show:"label_outside"},{label:"Percentage",value:"percent",show:"label_outside"}]},label_outside:{title:"Show outside",info:"Would you like to show labels outside the donut?",type:"radiobutton",init:"false",data:[{label:"Yes",value:"true"},{label:"No",value:"false"}]},use_panels:{init:"true",hide:!0}}})}),define("plugin/charts/nvd3/stackedarea_full/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Expanded",zoomable:!0,category:"Area charts",keywords:"default small",columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/stackedarea_stream/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Stream",category:"Area charts",zoomable:!0,keywords:"default small",showmaxmin:!0,columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/histogram/config",["plugin/charts/forms/default"],function(e){return $.extend(!0,{},e,{library:"NVD3",tag:"svg",title:"Histogram",category:"Data processing (requires 'charts' tool from Toolshed)",execute:"histogram",keywords:"small medium large",columns:{y:{title:"Observations",is_numeric:!0}},settings:{x_axis_label:{init:"Values"},y_axis_label:{init:"Density"},y_axis_type:{init:"f"},y_axis_precision:{init:".2"}}})}),define("plugin/charts/nvd3/line/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Line chart",category:"Others",zoomable:!0,columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/scatter/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Scatter plot",category:"Others",zoomable:!0,columns:{x:{title:"Values for x-axis",is_numeric:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/stackedarea/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Regular",zoomable:!0,category:"Area charts",keywords:"default small",columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/jqplot/common/config",["plugin/charts/forms/default"],function(e){return $.extend(!0,{},e,{title:"",category:"",library:"jqPlot",tag:"div",zoomable:!0,keywords:"medium",settings:{separator_grid:{title:"Grids",type:"separator"},x_axis_grid:{title:"Axis grid",info:"Would you like to show grid lines for the X axis?",type:"radiobutton",init:"false",data:[{label:"On",value:"true"},{label:"Off",value:"false"}]},y_axis_grid:{title:"Axis grid",info:"Would you like to show grid lines for the Y axis?",type:"radiobutton",init:"true",data:[{label:"On",value:"true"},{label:"Off",value:"false"}]}}})}),define("plugin/charts/jqplot/bar/config",["plugin/charts/jqplot/common/config"],function(e){return $.extend(!0,{},e,{title:"Regular",category:"Bar diagrams",columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/jqplot/line/config",["plugin/charts/jqplot/common/config"],function(e){return $.extend(!0,{},e,{title:"Line chart",category:"Others",columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/jqplot/scatter/config",["plugin/charts/jqplot/common/config"],function(e){return $.extend(!0,{},e,{title:"Scatter plot",category:"Others",columns:{x:{title:"Values for x-axis",is_numeric:!0},y:{title:"Values for y-axis",is_numeric:!0}},settings:{x_axis_grid:{init:"true"}}})}),define("plugin/charts/jqplot/boxplot/config",["plugin/charts/jqplot/common/config"],function(e){return $.extend(!0,{},e,{title:"Box plot",category:"Data processing (requires 'charts' tool from Toolshed)",library:"jqPlot",tag:"div",execute:"boxplot",keywords:"small medium large",columns:{y:{title:"Observations",is_numeric:!0}},settings:{show_legend:{init:"false"}}})}),define("plugin/charts/jqplot/histogram_discrete/config",["plugin/charts/jqplot/common/config"],function(e){return $.extend(!0,{},e,{title:"Discrete Histogram",category:"Data processing (requires 'charts' tool from Toolshed)",execute:"histogramdiscrete",keywords:"small medium large",columns:{x:{title:"Observations",is_label:!0}},settings:{x_axis_label:{init:"Breaks"},y_axis_label:{init:"Density"}}})}),define("plugin/charts/others/heatmap/config",["plugin/charts/forms/default"],function(e){return $.extend(!0,{},e,{title:"Heatmap",category:"Others",library:"Custom",tag:"svg",keywords:"small",zoomable:!0,columns:{x:{title:"Column labels",is_label:!0,is_numeric:!0,is_unique:!0},y:{title:"Row labels",is_label:!0,is_numeric:!0,is_unique:!0},z:{title:"Observation",is_numeric:!0}},settings:{use_panels:{init:"true",hide:!0},color_set:{title:"Color scheme",info:"Select a color scheme for your heatmap",type:"select",init:"jet",data:[{label:"Cold-to-Hot",value:"hot"},{label:"Cool",value:"cool"},{label:"Copper",value:"copper"},{label:"Gray scale",value:"gray"},{label:"Jet",value:"jet"},{label:"No-Green",value:"no_green"},{label:"Ocean",value:"ocean"},{label:"Polar",value:"polar"},{label:"Red-to-Green",value:"redgreen"},{label:"Red-to-green (saturated)",value:"red2green"},{label:"Relief",value:"relief"},{label:"Seismograph",value:"seis"},{label:"Sealand",value:"sealand"},{label:"Split",value:"split"},{label:"Wysiwyg",value:"wysiwyg"}]},url_template:{title:"Url template",info:"Enter a url to link the labels with external sources. Use __LABEL__ as placeholder.",type:"text",init:"",placeholder:"http://someurl.com?id=__LABEL__"}}})}),define("plugin/charts/others/heatmap_cluster/config",["plugin/charts/others/heatmap/config"],function(e){return $.extend(!0,{},e,{title:"Clustered Heatmap",category:"Data processing (requires 'charts' tool from Toolshed)",execute:"heatmap",keywords:"small medium large"})}),define("plugin/charts/types",["plugin/charts/nvd3/bar/config","plugin/charts/nvd3/bar_stacked/config","plugin/charts/nvd3/bar_horizontal/config","plugin/charts/nvd3/bar_horizontal_stacked/config","plugin/charts/nvd3/line_focus/config","plugin/charts/nvd3/pie/config","plugin/charts/nvd3/stackedarea_full/config","plugin/charts/nvd3/stackedarea_stream/config","plugin/charts/nvd3/histogram/config","plugin/charts/nvd3/line/config","plugin/charts/nvd3/scatter/config","plugin/charts/nvd3/stackedarea/config","plugin/charts/jqplot/bar/config","plugin/charts/jqplot/line/config","plugin/charts/jqplot/scatter/config","plugin/charts/jqplot/boxplot/config","plugin/charts/jqplot/histogram_discrete/config","plugin/charts/others/heatmap/config","plugin/charts/others/heatmap_cluster/config"],function(e,t,n,r,i,s,o,u,a,f,l,c,h,p,d,v,m,g,y){return Backbone.Model.extend({defaults:{nvd3_bar:e,nvd3_bar_stacked:t,nvd3_bar_horizontal:n,nvd3_bar_horizontal_stacked:r,nvd3_line_focus:i,nvd3_stackedarea:c,nvd3_stackedarea_full:o,nvd3_stackedarea_stream:u,nvd3_pie:s,nvd3_line:f,nvd3_scatter:l,nvd3_histogram:a,jqplot_bar:h,jqplot_histogram_discrete:m,jqplot_line:p,jqplot_scatter:d,jqplot_boxplot:v,others_heatmap:g,others_heatmap_cluster:y}})}),define("plugin/app",["mvc/ui/ui-modal","mvc/ui/ui-portlet","mvc/ui/ui-misc","utils/utils","plugin/library/jobs","plugin/library/datasets","plugin/library/storage","utils/deferred","plugin/views/viewer","plugin/views/editor","plugin/models/config","plugin/models/chart","plugin/charts/types"],function(e,t,n,r,i,s,o,u,a,f,l,c,h){return Backbone.View.extend({initialize:function(t){this.options=t,Galaxy&&Galaxy.modal?this.modal=Galaxy.modal:this.modal=new e.View,this.config=new l,this.types=new h,this.chart=new c,this.jobs=new i(this),this.datasets=new s(this),this.storage=new o(this),this.deferred=new u,this.viewer_view=new a(this),this.editor_view=new f(this),this.$el.append(this.viewer_view.$el),this.$el.append(this.editor_view.$el);if(!this.storage.load())this.go("editor");else{this.go("viewer");var n=this;this.deferred.execute(function(){n.chart.trigger("redraw")})}},go:function(e){$(".tooltip").hide();switch(e){case"editor":this.editor_view.show(),this.viewer_view.hide();break;case"viewer":this.editor_view.hide(),this.viewer_view.show()}},chartPath:function(e){var t=e.split(/_(.+)/);return t.length>=2?t[0]+"/"+t[1]:(console.debug("FAILED App:chartPath() - Invalid format: "+e),undefined)}})});
\ No newline at end of file
diff --git a/config/plugins/visualizations/charts/templates/charts.mako b/config/plugins/visualizations/charts/templates/charts.mako
index 34d6286b0e1..949cdc42b35 100644
--- a/config/plugins/visualizations/charts/templates/charts.mako
+++ b/config/plugins/visualizations/charts/templates/charts.mako
@@ -15,7 +15,7 @@
                 'libs/jquery/select2',
                 'libs/bootstrap',
                 'libs/underscore',
-                'libs/backbone/backbone',
+                'libs/backbone',
                 'libs/d3',
                 'libs/require')}
 
@@ -39,7 +39,7 @@
 
         ## load merged/minified code
         ${h.javascript_link( app_root + "build-app.js" )}
-        
+
         ## install default css
         ${h.stylesheet_link( app_root + "app.css" )}
     </head>
@@ -79,7 +79,7 @@
                 },
                 shim: {
                     "libs/underscore": { exports: "_" },
-                    "libs/backbone/backbone": { exports: "Backbone" },
+                    "libs/backbone": { exports: "Backbone" },
                     "d3": { exports: "d3"}
 
                 }
@@ -89,7 +89,7 @@
             };
             // application
             var app = null;
-            $(function() {   
+            $(function() {
                 // request application script
                 require(['plugin/app'], function(App) {
                     // load options
@@ -97,10 +97,10 @@
                         id      : ${h.dumps( visualization_id )} || undefined,
                         config  : ${h.dumps( config )}
                     }
-                    
+
                     // create application
                     app = new App(options);
-                    
+
                     // add to body
                     $('body').append(app.$el);
                 });
diff --git a/config/plugins/visualizations/scatterplot/templates/scatterplot.mako b/config/plugins/visualizations/scatterplot/templates/scatterplot.mako
index d16eb9dde60..8d1c7fb88ed 100644
--- a/config/plugins/visualizations/scatterplot/templates/scatterplot.mako
+++ b/config/plugins/visualizations/scatterplot/templates/scatterplot.mako
@@ -23,12 +23,16 @@ ${h.css( 'base', 'jquery-ui/smoothness/jquery-ui')}
 ${h.stylesheet_link( root + 'plugins/visualizations/scatterplot/static/scatterplot.css' )}
 
 ## ----------------------------------------------------------------------------
+<script type="text/javascript">
+// TODO: blah
+window.Galaxy = { root: '${ root }' };
+</script>
 ${h.js( 'libs/jquery/jquery',
         'libs/jquery/jquery.migrate',
         'libs/jquery/jquery-ui',
         'libs/bootstrap',
         'libs/underscore',
-        'libs/backbone/backbone',
+        'libs/backbone',
         'libs/d3',
         'libs/handlebars.runtime',
         'ui/peek-column-selector',
@@ -41,7 +45,7 @@ ${h.javascript_link( root + 'plugins/visualizations/scatterplot/static/scatterpl
 function getModel(){
     return new ScatterplotModel({
         id      : ${h.dumps( visualization_id )} || undefined,
-        title   : "${title}",
+        title   : "${title or default_title}",
         config  : ${h.dumps( config, indent=2 )}
     });
 }
@@ -88,7 +92,7 @@ function getHDAJSON(){
                 hdaJSON = getHDAJSON(),
                 editor  = new ScatterplotConfigEditor({
                     el      : $( '.scatterplot-editor' ).attr( 'id', 'scatterplot-editor-hda-' + hdaJSON.id ),
-                    model   : getModel(),
+                    model   : model,
                     dataset : hdaJSON
                 }).render();
             window.editor = editor;
diff --git a/static/maps/libs/backbone/backbone.js.map b/static/maps/libs/backbone/backbone.js.map
deleted file mode 100644
index 3e6767e739a..00000000000
--- a/static/maps/libs/backbone/backbone.js.map
+++ /dev/null
@@ -1 +0,0 @@
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index be38b058ef6..0e61f110ffe 100644
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diff --git a/static/scripts/libs/backbone/backbone.js b/static/scripts/libs/backbone/backbone.js
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index c348e636754..00000000000
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this._byId[h.cid],g=this.indexOf(h),this.models.splice(g,1),this.length--,b.silent||(b.index=g,h.trigger("remove",h,this,b)),this._removeReference(h,b));return d?a[0]:a},set:function(a,b){b=c.defaults({},b,p),b.parse&&(a=this.parse(a,b));var d=!c.isArray(a);a=d?a?[a]:[]:c.clone(a);var e,f,g,h,i,j,k,l=b.at,n=this.model,o=this.comparator&&null==l&&b.sort!==!1,q=c.isString(this.comparator)?this.comparator:null,r=[],s=[],t={},u=b.add,v=b.merge,w=b.remove,x=!o&&u&&w?[]:!1;for(e=0,f=a.length;f>e;e++){if(i=a[e]||{},g=i instanceof m?h=i:i[n.prototype.idAttribute||"id"],j=this.get(g))w&&(t[j.cid]=!0),v&&(i=i===h?h.attributes:i,b.parse&&(i=j.parse(i,b)),j.set(i,b),o&&!k&&j.hasChanged(q)&&(k=!0)),a[e]=j;else 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this.remove(b,a),b},unshift:function(a,b){return this.add(a,c.extend({at:0},b))},shift:function(a){var b=this.at(0);return this.remove(b,a),b},slice:function(){return g.apply(this.models,arguments)},get:function(a){return null==a?void 0:this._byId[a]||this._byId[a.id]||this._byId[a.cid]},at:function(a){return this.models[a]},where:function(a,b){return c.isEmpty(a)?b?void 0:[]:this[b?"find":"filter"](function(b){for(var c in a)if(a[c]!==b.get(c))return!1;return!0})},findWhere:function(a){return this.where(a,!0)},sort:function(a){if(!this.comparator)throw new Error("Cannot sort a set without a comparator");return a||(a={}),c.isString(this.comparator)||1===this.comparator.length?this.models=this.sortBy(this.comparator,this):this.models.sort(c.bind(this.comparator,this)),a.silent||this.trigger("sort",this,a),this},pluck:function(a){return c.invoke(this.models,"get",a)},fetch:function(a){a=a?c.clone(a):{},void 0===a.parse&&(a.parse=!0);var b=a.success,d=this;return a.success=function(c){var e=a.reset?"reset":"set";d[e](c,a),b&&b(d,c,a),d.trigger("sync",d,c,a)},L(this,a),this.sync("read",this,a)},create:function(a,b){if(b=b?c.clone(b):{},!(a=this._prepareModel(a,b)))return!1;b.wait||this.add(a,b);var d=this,e=b.success;return b.success=function(a,c){b.wait&&d.add(a,b),e&&e(a,c,b)},a.save(null,b),a},parse:function(a){return a},clone:function(){return new this.constructor(this.models)},_reset:function(){this.length=0,this.models=[],this._byId={}},_prepareModel:function(a,b){if(a instanceof m)return a;b=b?c.clone(b):{},b.collection=this;var d=new this.model(a,b);return d.validationError?(this.trigger("invalid",this,d.validationError,b),!1):d},_addReference:function(a){this._byId[a.cid]=a,null!=a.id&&(this._byId[a.id]=a),a.collection||(a.collection=this),a.on("all",this._onModelEvent,this)},_removeReference:function(a){this===a.collection&&delete a.collection,a.off("all",this._onModelEvent,this)},_onModelEvent:function(a,b,c,d){("add"!==a&&"remove"!==a||c===this)&&("destroy"===a&&this.remove(b,d),b&&a==="change:"+b.idAttribute&&(delete this._byId[b.previous(b.idAttribute)],null!=b.id&&(this._byId[b.id]=b)),this.trigger.apply(this,arguments))}});var r=["forEach","each","map","collect","reduce","foldl","inject","reduceRight","foldr","find","detect","filter","select","reject","every","all","some","any","include","contains","invoke","max","min","toArray","size","first","head","take","initial","rest","tail","drop","last","without","difference","indexOf","shuffle","lastIndexOf","isEmpty","chain","sample"];c.each(r,function(a){o.prototype[a]=function(){var b=g.call(arguments);return b.unshift(this.models),c[a].apply(c,b)}});var s=["groupBy","countBy","sortBy","indexBy"];c.each(s,function(a){o.prototype[a]=function(b,d){var e=c.isFunction(b)?b:function(a){return a.get(b)};return c[a](this.models,e,d)}});var t=b.View=function(a){this.cid=c.uniqueId("view"),a||(a={}),c.extend(this,c.pick(a,v)),this._ensureElement(),this.initialize.apply(this,arguments),this.delegateEvents()},u=/^(\S+)\s*(.*)$/,v=["model","collection","el","id","attributes","className","tagName","events"];c.extend(t.prototype,h,{tagName:"div",$:function(a){return this.$el.find(a)},initialize:function(){},render:function(){return this},remove:function(){return this.$el.remove(),this.stopListening(),this},setElement:function(a,c){return this.$el&&this.undelegateEvents(),this.$el=a instanceof b.$?a:b.$(a),this.el=this.$el[0],c!==!1&&this.delegateEvents(),this},delegateEvents:function(a){if(!a&&!(a=c.result(this,"events")))return this;this.undelegateEvents();for(var b in a){var d=a[b];if(c.isFunction(d)||(d=this[a[b]]),d){var e=b.match(u),f=e[1],g=e[2];d=c.bind(d,this),f+=".delegateEvents"+this.cid,""===g?this.$el.on(f,d):this.$el.on(f,g,d)}}return this},undelegateEvents:function(){return this.$el.off(".delegateEvents"+this.cid),this},_ensureElement:function(){if(this.el)this.setElement(c.result(this,"el"),!1);else{var a=c.extend({},c.result(this,"attributes"));this.id&&(a.id=c.result(this,"id")),this.className&&(a.class=c.result(this,"className"));var d=b.$("<"+c.result(this,"tagName")+">").attr(a);this.setElement(d,!1)}}}),b.sync=function(a,d,e){var f=x[a];c.defaults(e||(e={}),{emulateHTTP:b.emulateHTTP,emulateJSON:b.emulateJSON});var g={type:f,dataType:"json"};if(e.url||(g.url=c.result(d,"url")||K()),null!=e.data||!d||"create"!==a&&"update"!==a&&"patch"!==a||(g.contentType="application/json",g.data=JSON.stringify(e.attrs||d.toJSON(e))),e.emulateJSON&&(g.contentType="application/x-www-form-urlencoded",g.data=g.data?{model:g.data}:{}),e.emulateHTTP&&("PUT"===f||"DELETE"===f||"PATCH"===f)){g.type="POST",e.emulateJSON&&(g.data._method=f);var h=e.beforeSend;e.beforeSend=function(a){return a.setRequestHeader("X-HTTP-Method-Override",f),h?h.apply(this,arguments):void 0}}"GET"===g.type||e.emulateJSON||(g.processData=!1),"PATCH"===g.type&&w&&(g.xhr=function(){return new ActiveXObject("Microsoft.XMLHTTP")});var i=e.xhr=b.ajax(c.extend(g,e));return d.trigger("request",d,i,e),i};var w=!("undefined"==typeof window||!window.ActiveXObject||window.XMLHttpRequest&&(new XMLHttpRequest).dispatchEvent),x={create:"POST",update:"PUT",patch:"PATCH","delete":"DELETE",read:"GET"};b.ajax=function(){return b.$.ajax.apply(b.$,arguments)};var y=b.Router=function(a){a||(a={}),a.routes&&(this.routes=a.routes),this._bindRoutes(),this.initialize.apply(this,arguments)},z=/\((.*?)\)/g,A=/(\(\?)?:\w+/g,B=/\*\w+/g,C=/[\-{}\[\]+?.,\\\^$|#\s]/g;c.extend(y.prototype,h,{initialize:function(){},route:function(a,d,e){c.isRegExp(a)||(a=this._routeToRegExp(a)),c.isFunction(d)&&(e=d,d=""),e||(e=this[d]);var f=this;return b.history.route(a,function(c){var g=f._extractParameters(a,c);f.execute(e,g),f.trigger.apply(f,["route:"+d].concat(g)),f.trigger("route",d,g),b.history.trigger("route",f,d,g)}),this},execute:function(a,b){a&&a.apply(this,b)},navigate:function(a,c){return b.history.navigate(a,c),this},_bindRoutes:function(){if(this.routes){this.routes=c.result(this,"routes");for(var a,b=c.keys(this.routes);null!=(a=b.pop());)this.route(a,this.routes[a])}},_routeToRegExp:function(a){return a=a.replace(C,"\\$&").replace(z,"(?:$1)?").replace(A,function(a,b){return b?a:"([^/?]+)"}).replace(B,"([^?]*?)"),new RegExp("^"+a+"(?:\\?([\\s\\S]*))?$")},_extractParameters:function(a,b){var d=a.exec(b).slice(1);return c.map(d,function(a,b){return b===d.length-1?a||null:a?decodeURIComponent(a):null})}});var D=b.History=function(){this.handlers=[],c.bindAll(this,"checkUrl"),"undefined"!=typeof window&&(this.location=window.location,this.history=window.history)},E=/^[#\/]|\s+$/g,F=/^\/+|\/+$/g,G=/msie [\w.]+/,H=/\/$/,I=/#.*$/;D.started=!1,c.extend(D.prototype,h,{interval:50,atRoot:function(){return this.location.pathname.replace(/[^\/]$/,"$&/")===this.root},getHash:function(a){var b=(a||this).location.href.match(/#(.*)$/);return b?b[1]:""},getFragment:function(a,b){if(null==a)if(this._hasPushState||!this._wantsHashChange||b){a=decodeURI(this.location.pathname+this.location.search);var c=this.root.replace(H,"");a.indexOf(c)||(a=a.slice(c.length))}else a=this.getHash();return a.replace(E,"")},start:function(a){if(D.started)throw new Error("Backbone.history has already been started");D.started=!0,this.options=c.extend({root:"/"},this.options,a),this.root=this.options.root,this._wantsHashChange=this.options.hashChange!==!1,this._wantsPushState=!!this.options.pushState,this._hasPushState=!!(this.options.pushState&&this.history&&this.history.pushState);var d=this.getFragment(),e=document.documentMode,f=G.exec(navigator.userAgent.toLowerCase())&&(!e||7>=e);if(this.root=("/"+this.root+"/").replace(F,"/"),f&&this._wantsHashChange){var g=b.$('<iframe src="javascript:0" tabindex="-1">');this.iframe=g.hide().appendTo("body")[0].contentWindow,this.navigate(d)}this._hasPushState?b.$(window).on("popstate",this.checkUrl):this._wantsHashChange&&"onhashchange"in window&&!f?b.$(window).on("hashchange",this.checkUrl):this._wantsHashChange&&(this._checkUrlInterval=setInterval(this.checkUrl,this.interval)),this.fragment=d;var h=this.location;if(this._wantsHashChange&&this._wantsPushState){if(!this._hasPushState&&!this.atRoot())return this.fragment=this.getFragment(null,!0),this.location.replace(this.root+"#"+this.fragment),!0;this._hasPushState&&this.atRoot()&&h.hash&&(this.fragment=this.getHash().replace(E,""),this.history.replaceState({},document.title,this.root+this.fragment))}return this.options.silent?void 0:this.loadUrl()},stop:function(){b.$(window).off("popstate",this.checkUrl).off("hashchange",this.checkUrl),this._checkUrlInterval&&clearInterval(this._checkUrlInterval),D.started=!1},route:function(a,b){this.handlers.unshift({route:a,callback:b})},checkUrl:function(){var a=this.getFragment();return a===this.fragment&&this.iframe&&(a=this.getFragment(this.getHash(this.iframe))),a===this.fragment?!1:(this.iframe&&this.navigate(a),void this.loadUrl())},loadUrl:function(a){return a=this.fragment=this.getFragment(a),c.any(this.handlers,function(b){return b.route.test(a)?(b.callback(a),!0):void 0})},navigate:function(a,b){if(!D.started)return!1;b&&b!==!0||(b={trigger:!!b});var c=this.root+(a=this.getFragment(a||""));if(a=a.replace(I,""),this.fragment!==a){if(this.fragment=a,""===a&&"/"!==c&&(c=c.slice(0,-1)),this._hasPushState)this.history[b.replace?"replaceState":"pushState"]({},document.title,c);else{if(!this._wantsHashChange)return this.location.assign(c);this._updateHash(this.location,a,b.replace),this.iframe&&a!==this.getFragment(this.getHash(this.iframe))&&(b.replace||this.iframe.document.open().close(),this._updateHash(this.iframe.location,a,b.replace))}return b.trigger?this.loadUrl(a):void 0}},_updateHash:function(a,b,c){if(c){var d=a.href.replace(/(javascript:|#).*$/,"");a.replace(d+"#"+b)}else a.hash="#"+b}}),b.history=new D;var J=function(a,b){var d,e=this;d=a&&c.has(a,"constructor")?a.constructor:function(){return e.apply(this,arguments)},c.extend(d,e,b);var f=function(){this.constructor=d};return f.prototype=e.prototype,d.prototype=new f,a&&c.extend(d.prototype,a),d.__super__=e.prototype,d};m.extend=o.extend=y.extend=t.extend=D.extend=J;var K=function(){throw new Error('A "url" property or function must be specified')},L=function(a,b){var c=b.error;b.error=function(d){c&&c(a,d,b),a.trigger("error",a,d,b)}};return b});
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diff --git a/static/scripts/mvc/visualization/visualization-model.js b/static/scripts/mvc/visualization/visualization-model.js
index 5c18f0ef0d2..f532dd866d8 100644
--- a/static/scripts/mvc/visualization/visualization-model.js
+++ b/static/scripts/mvc/visualization/visualization-model.js
@@ -1,2 +1,2 @@
-var Visualization=Backbone.Model.extend({defaults:{config:{}},urlRoot:function(){var a="/api/visualizations";return Galaxy.root+a},initialize:function(a){_.isObject(a.config)&&_.isObject(this.defaults.config)&&_.defaults(a.config,this.defaults.config),this._setUpListeners()},_setUpListeners:function(){},set:function(a,b){if("config"===a){var c=this.get("config");_.isObject(c)&&(b=_.extend(_.clone(c),b))}return Backbone.Model.prototype.set.call(this,a,b),this},toString:function(){var a=this.get("id")||"";return this.get("title")&&(a+=":"+this.get("title")),"Visualization("+a+")"}}),VisualizationCollection=Backbone.Collection.extend({model:Visualization,url:function(){return Galaxy.root+"api/visualizations"},initialize:function(a,b){b=b||{}},set:function(a,b){var c=this;a=_.map(a,function(a){var b=c.get(a.id);if(!b)return a;var d=b.toJSON();return _.extend(d,a),d}),Backbone.Collection.prototype.set.call(this,a,b)},toString:function(){return["VisualizationCollection(",[this.historyId,this.length].join(),")"].join("")}});
+var Visualization=Backbone.Model.extend({defaults:{config:{}},urlRoot:function(){var a="api/visualizations";return Galaxy.root+a},initialize:function(a){_.isObject(a.config)&&_.isObject(this.defaults.config)&&_.defaults(a.config,this.defaults.config),this._setUpListeners()},_setUpListeners:function(){},set:function(a,b){if("config"===a){var c=this.get("config");_.isObject(c)&&(b=_.extend(_.clone(c),b))}return Backbone.Model.prototype.set.call(this,a,b),this},toString:function(){var a=this.get("id")||"";return this.get("title")&&(a+=":"+this.get("title")),"Visualization("+a+")"}}),VisualizationCollection=Backbone.Collection.extend({model:Visualization,url:function(){return Galaxy.root+"api/visualizations"},initialize:function(a,b){b=b||{}},set:function(a,b){var c=this;a=_.map(a,function(a){var b=c.get(a.id);if(!b)return a;var d=b.toJSON();return _.extend(d,a),d}),Backbone.Collection.prototype.set.call(this,a,b)},toString:function(){return["VisualizationCollection(",[this.historyId,this.length].join(),")"].join("")}});
 //# sourceMappingURL=../../../maps/mvc/visualization/visualization-model.js.map
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