From f3853a09562af8d7539740344433c4a8dc94aa36 Mon Sep 17 00:00:00 2001 From: Devon Ryan Date: Tue, 27 Jun 2017 11:01:46 +0200 Subject: [PATCH] Test a non-fastqsanger file and ensure it doesn't pass the sniff test. --- lib/galaxy/datatypes/sequence.py | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/lib/galaxy/datatypes/sequence.py b/lib/galaxy/datatypes/sequence.py index 7af84ed57bf..4ca9b919a6c 100644 --- a/lib/galaxy/datatypes/sequence.py +++ b/lib/galaxy/datatypes/sequence.py @@ -608,6 +608,11 @@ class BaseFastq ( Sequence ): >>> fname = get_test_fname( '2.fastqsanger' ) >>> FastqSanger().sniff( fname ) True + >>> fname = get_test_fname( '2.fastq' ) + >>> Fastq().sniff( fname ) + True + >>> FastqSanger().sniff( fname ) + False """ compressed = is_gzip(filename) or is_bz2(filename) if compressed and not isinstance(self, Binary):