From f27b4e50f665ab32737d79294e5ca7c7ce48c476 Mon Sep 17 00:00:00 2001
From: Sergey Golitsynskiy <sgolitsynskiy@gmail.com>
Date: Fri, 2 Oct 2020 22:41:42 -0400
Subject: [PATCH] Add github workflow; env var to override db uri

---
 .github/workflows/db_indexes.yaml | 45 +++++++++++++++++++++++++++++++
 scripts/check_model.py            |  2 +-
 2 files changed, 46 insertions(+), 1 deletion(-)
 create mode 100644 .github/workflows/db_indexes.yaml

diff --git a/.github/workflows/db_indexes.yaml b/.github/workflows/db_indexes.yaml
new file mode 100644
index 00000000000..846f2cc5956
--- /dev/null
+++ b/.github/workflows/db_indexes.yaml
@@ -0,0 +1,45 @@
+name: Database indexes
+on: [push, pull_request]
+defaults:
+  run:
+    working-directory: 'galaxy root'
+jobs:
+  check:
+    name: Check database indexes
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: [3.7]
+        db: ['postgresql', 'sqlite']
+    services:
+      postgres:
+        image: postgres:11
+        env:
+          POSTGRES_USER: postgres
+          POSTGRES_PASSWORD: postgres
+          POSTGRES_DB: postgres
+        ports:
+          - 5432:5432
+    steps:
+    - uses: actions/checkout@v2
+      with:
+        path: 'galaxy root'
+    - uses: actions/setup-python@v1
+      with:
+        python-version: ${{ matrix.python-version }}
+    - name: Cache pip dir
+      uses: actions/cache@v1
+      id: pip-cache
+      with:
+        path: ~/.cache/pip
+        key: pip-cache-${{ matrix.python-version }}-${{ hashFiles('galaxy root/requirements.txt') }}
+    - name: Install tox
+      run: pip install tox
+    - name: Check indexes on postgresql
+      if: matrix.db == 'postgresql'
+      env:
+        GALAXY_CONFIG_OVERRIDE_DATABASE_CONNECTION: 'postgres://postgres:postgres@localhost:5432/galaxy?client_encoding=utf8'
+      run: tox -e check_indexes
+    - name: Check indexes on sqlite
+      if: matrix.db == 'sqlite'
+      run: tox -e check_indexes
diff --git a/scripts/check_model.py b/scripts/check_model.py
index 65e6d7cb4f4..b8ef7dfbe01 100644
--- a/scripts/check_model.py
+++ b/scripts/check_model.py
@@ -40,7 +40,7 @@ def find_missing_indexes():
     mapping_indexes = load_indexes(metadata)
 
     # create EMPTY metadata, then load from database
-    db_url = get_config(sys.argv)['db_url']
+    db_url = os.environ.get("GALAXY_CONFIG_OVERRIDE_DATABASE_CONNECTION") or get_config(sys.argv)['db_url']
     metadata = MetaData(bind=create_engine(db_url))
     metadata.reflect()
     indexes_in_db = load_indexes(metadata)