diff --git a/lib/galaxy/datatypes/converters/fasta_to_bowtie_base_index_converter.xml b/lib/galaxy/datatypes/converters/fasta_to_bowtie_base_index_converter.xml
index 66862d82b87..53f944b5590 100644
--- a/lib/galaxy/datatypes/converters/fasta_to_bowtie_base_index_converter.xml
+++ b/lib/galaxy/datatypes/converters/fasta_to_bowtie_base_index_converter.xml
@@ -1,8 +1,8 @@
-<tool id="CONVERTER_fasta_to_bowtie_base_index" name="Convert FASTA to Bowtie base space Index" version="1.0.0">
+<tool id="CONVERTER_fasta_to_bowtie_base_index" name="Convert FASTA to Bowtie base space Index" version="1.3.1">
     <!-- <description>__NOT_USED_CURRENTLY_FOR_CONVERTERS__</description> -->
     <!-- Used on the metadata edit page. -->
     <requirements>
-        <requirement type="package">bowtie</requirement>
+        <requirement type="package" version="1.3.1">bowtie</requirement>
     </requirements>
     <command>
 <![CDATA[
diff --git a/lib/galaxy/datatypes/converters/fasta_to_bowtie_color_index_converter.xml b/lib/galaxy/datatypes/converters/fasta_to_bowtie_color_index_converter.xml
index 48f70bec2bb..204af3bd10c 100644
--- a/lib/galaxy/datatypes/converters/fasta_to_bowtie_color_index_converter.xml
+++ b/lib/galaxy/datatypes/converters/fasta_to_bowtie_color_index_converter.xml
@@ -1,8 +1,8 @@
-<tool id="CONVERTER_fasta_to_bowtie_color_index" name="Convert FASTA to Bowtie color space Index" version="1.0.0">
+<tool id="CONVERTER_fasta_to_bowtie_color_index" name="Convert FASTA to Bowtie color space Index" version="1.3.1">
     <!-- <description>__NOT_USED_CURRENTLY_FOR_CONVERTERS__</description> -->
     <!-- Used on the metadata edit page. -->
     <requirements>
-        <requirement type="package">bowtie</requirement>
+        <requirement type="package" version="1.3.1">bowtie</requirement>
     </requirements>
     <command>
 <![CDATA[
diff --git a/packages/tool_util/HISTORY.rst b/packages/tool_util/HISTORY.rst
index 8123bb92be7..48bf04ace8d 100644
--- a/packages/tool_util/HISTORY.rst
+++ b/packages/tool_util/HISTORY.rst
@@ -6,10 +6,16 @@ History
 .. to_doc
 
 ---------------------
-21.1.3.dev0
+21.9.1 (2021-11-03)
 ---------------------
 
+* Fix tool linting.
 
+---------------------
+21.9.0 (2021-11-03)
+---------------------
+
+* First release from the 21.09 branch of Galaxy.
 
 ---------------------
 21.1.2 (2021-06-23)