From ef5c9cd9e020992e9d8c09c371eef4ebd5711cfa Mon Sep 17 00:00:00 2001
From: Bjoern Gruening <bjoern.gruening@gmail.com>
Date: Fri, 5 Mar 2021 09:55:20 +0100
Subject: [PATCH] some pyiron fixes from EU

---
 tools/interactive/interactivetool_pyiron.xml | 18 ++++++++----------
 1 file changed, 8 insertions(+), 10 deletions(-)

diff --git a/tools/interactive/interactivetool_pyiron.xml b/tools/interactive/interactivetool_pyiron.xml
index 69caecdf71b..c1486c87121 100644
--- a/tools/interactive/interactivetool_pyiron.xml
+++ b/tools/interactive/interactivetool_pyiron.xml
@@ -13,8 +13,8 @@
         <environment_variable name="REMOTE_HOST">$__galaxy_url__</environment_variable>
         <environment_variable name="GALAXY_WEB_PORT">8080</environment_variable>
         <environment_variable name="GALAXY_URL">$__galaxy_url__</environment_variable>
-        <environment_variable name="API_KEY" inject="api_key" />
-        <environment_variable name="PYIRONRESOURCEPATHS">/home/jovyan/resources</environment_variable>
+        <environment_variable name="API_KEY" inject="api_key"/>
+        <environment_variable name="PYIRONRESOURCEPATHS">/opt/conda/share/pyiron/</environment_variable>
     </environment_variables>
     <command detect_errors="aggressive"><![CDATA[
         #import re
@@ -54,7 +54,6 @@
     ]]>
     </command>
     <inputs>
-
         <conditional name="mode">
             <param name="mode_select" type="select" label="Do you already have a notebook?" help="If not, no problem we will provide you with a default one.">
                 <option value="scratch">Start with a fresh notebook</option>
@@ -63,21 +62,19 @@
             <when value="scratch"/>
             <when value="previous">
                 <param name="ipynb" type="data" format="ipynb" label="IPython Notebook"/>
-                <param name="run_it" type="boolean" truevalue="true" falsevalue="false" label="Execute notebook and return a new one."
-                    help="This option is useful in workflows when you just want to execute a notebook and not dive into the webfrontend."/>
+                <param name="run_it" type="boolean" truevalue="true" falsevalue="false" label="Execute notebook and return a new one." help="This option is useful in workflows when you just want to execute a notebook and not dive into the webfrontend."/>
             </when>
         </conditional>
         <param name="input" type="data" optional="true" label="Include data into the environment"/>
-
     </inputs>
     <outputs>
-        <data name="jupyter_notebook" format="ipynb" label="PyIron Workbench"></data>
+        <data name="jupyter_notebook" format="ipynb" label="PyIron Workbench"/>
     </outputs>
     <tests>
         <test expect_num_outputs="1">
-            <param name="mode" value="previous" />
-            <param name="ipynb" value="test.ipynb" />
-            <param name="run_it" value="true" />
+            <param name="mode" value="previous"/>
+            <param name="ipynb" value="test.ipynb"/>
+            <param name="run_it" value="true"/>
             <output name="jupyter_notebook" file="test.ipynb" ftype="ipynb"/>
         </test>
     </tests>
@@ -98,3 +95,4 @@
     You can import data into the notebook via a predefined `get()` function and write results back to Galaxy with a `put()` function.
     </help>
 </tool>
+