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Remove deprecated `interpreter attribute from tools <command>`

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This commit is contained in:
Nicola Soranzo
2020-03-05 12:53:09 +01:00
parent 476b194819
commit ef4f5ccda4
29 changed files with 277 additions and 225 deletions
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tools/data_source/wormbase_test.xml
+3 -1
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@@ -1,7 +1,9 @@
<?xml version="1.0"?>
<tool name="Wormbase" id="wormbase_test" tool_type="data_source" version="1.0.0">
<description>test server</description>
<command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command>
<command><![CDATA[
python '$__tool_directory__/data_source.py' '$output' $__app__.config.output_size_limit
]]></command>
<inputs action="http://dev.wormbase.org/db/seq/gbrowse/c_elegans/" check_values="false" target="_top">
<display>go to Wormbase test server $GALAXY_URL</display>
<param name="GALAXY_URL" type="baseurl" value="/tool_runner?tool_id=wormbase_test" />