diff --git a/client/galaxy/scripts/galaxy.library.js b/client/galaxy/scripts/galaxy.library.js
index a94300bbd39..55f2745e8a9 100644
--- a/client/galaxy/scripts/galaxy.library.js
+++ b/client/galaxy/scripts/galaxy.library.js
@@ -176,7 +176,7 @@ var GalaxyLibrary = Backbone.View.extend({
                 mod_toastr.info("You must select at least one dataset to download");
                 Galaxy.libraries.library_router.navigate(`folders/${folder_id}`, { trigger: true, replace: true });
             } else {
-                Galaxy.libraries.folderToolbarView.download(folder_id, format);
+                Galaxy.libraries.folderToolbarView.download(format);
                 Galaxy.libraries.library_router.navigate(`folders/${folder_id}`, { trigger: false, replace: true });
             }
         });
diff --git a/client/galaxy/scripts/mvc/collection/list-collection-creator.js b/client/galaxy/scripts/mvc/collection/list-collection-creator.js
index ed99b659ca1..5a0072d0503 100644
--- a/client/galaxy/scripts/mvc/collection/list-collection-creator.js
+++ b/client/galaxy/scripts/mvc/collection/list-collection-creator.js
@@ -278,8 +278,8 @@ var ListCollectionCreator = Backbone.View.extend(BASE_MVC.LoggableMixin)
 
         /** describe what is wrong with a particular element if anything */
         _isElementInvalid: function(element) {
-            if (element.history_content_type !== "dataset") {
-                return _l("is not a dataset");
+            if (element.history_content_type === "dataset_collection") {
+                return _l("is a collection, this is not allowed");
             }
             var validState = element.state === STATES.OK || _.contains(STATES.NOT_READY_STATES, element.state);
             if (!validState) {
diff --git a/client/galaxy/scripts/mvc/collection/list-of-pairs-collection-creator.js b/client/galaxy/scripts/mvc/collection/list-of-pairs-collection-creator.js
index d2754caae16..15a2998f08a 100644
--- a/client/galaxy/scripts/mvc/collection/list-of-pairs-collection-creator.js
+++ b/client/galaxy/scripts/mvc/collection/list-of-pairs-collection-creator.js
@@ -1796,7 +1796,8 @@ var pairedCollectionCreatorModal = function _pairedCollectionCreatorModal(datase
         oncreate: function(creator, response) {
             Galaxy.modal.hide();
             deferred.resolve(response);
-        }
+        },
+        title: _l("Create a collection of paired datasets")
     });
 
     if (!window.Galaxy || !Galaxy.modal) {
@@ -1805,7 +1806,7 @@ var pairedCollectionCreatorModal = function _pairedCollectionCreatorModal(datase
 
     creator = new PairedCollectionCreator(options);
     Galaxy.modal.show({
-        title: _l("Create a collection of paired datasets"),
+        title: options.title,
         body: creator.$el,
         width: "80%",
         height: "800px",
diff --git a/client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js b/client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js
index 5e0f92a68bb..9f4c9d2726c 100644
--- a/client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js
+++ b/client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js
@@ -3,17 +3,23 @@ import mod_utils from "utils/utils";
 import mod_toastr from "libs/toastr";
 import mod_library_model from "mvc/library/library-model";
 import mod_select from "mvc/ui/ui-select";
+import LIST_CREATOR from "mvc/collection/list-collection-creator";
+import PAIR_CREATOR from "mvc/collection/pair-collection-creator";
+import PAIRED_CREATOR from "mvc/collection/list-of-pairs-collection-creator";
+import HDCA_MODEL from "mvc/history/hdca-model";
 import "libs/jquery/jstree";
+
 var FolderToolbarView = Backbone.View.extend({
     el: "#center",
 
     events: {
-        "click #toolbtn_create_folder": "createFolderFromModal",
-        "click #toolbtn_bulk_import": "modalBulkImport",
-        "click #include_deleted_datasets_chk": "checkIncludeDeleted",
-        "click #toolbtn_bulk_delete": "deleteSelectedItems",
+        "click .toolbtn-create-folder": "createFolderFromModal",
+        "click .toolbtn-bulk-import": "importToHistoryModal",
+        "click .include-deleted-datasets-chk": "checkIncludeDeleted",
+        "click .toolbtn-bulk-delete": "deleteSelectedItems",
         "click .toolbtn-show-locinfo": "showLocInfo",
-        "click .page_size_prompt": "showPageSizePrompt"
+        "click .page-size-prompt": "showPageSizePrompt",
+        "click .toolbtn-collection-import": "showCollectionSelect"
     },
 
     defaults: {
@@ -137,13 +143,9 @@ var FolderToolbarView = Backbone.View.extend({
         this.$el.find("[data-toggle]").tooltip();
     },
 
-    // shows modal for creating folder
     createFolderFromModal: function(event) {
         event.preventDefault();
         event.stopPropagation();
-
-        // create modal
-        var self = this;
         var template = this.templateNewFolderInModal();
         this.modal = Galaxy.modal;
         this.modal.show({
@@ -151,20 +153,19 @@ var FolderToolbarView = Backbone.View.extend({
             title: _l("Create New Folder"),
             body: template(),
             buttons: {
-                Create: function() {
-                    self.create_new_folder_event();
+                Create: () => {
+                    this.createNewFolderEvent();
                 },
-                Close: function() {
+                Close: () => {
                     Galaxy.modal.hide();
                 }
             }
         });
     },
 
-    // create the new folder from modal
-    create_new_folder_event: function() {
-        var folderDetails = this.serialize_new_folder();
-        if (this.validate_new_folder(folderDetails)) {
+    createNewFolderEvent: function() {
+        var folderDetails = this.serializeNewFolder();
+        if (this.validateNewFolder(folderDetails)) {
             var folder = new mod_library_model.FolderAsModel();
             var url_items = Backbone.history.fragment.split("/");
             var current_folder_id;
@@ -197,43 +198,39 @@ var FolderToolbarView = Backbone.View.extend({
         return false;
     },
 
-    // serialize data from the modal
-    serialize_new_folder: function() {
+    serializeNewFolder: function() {
         return {
             name: $("input[name='Name']").val(),
             description: $("input[name='Description']").val()
         };
     },
 
-    // validate new folder info
-    validate_new_folder: function(folderDetails) {
+    validateNewFolder: function(folderDetails) {
         return folderDetails.name !== "";
     },
 
-    // show bulk import modal
-    modalBulkImport: function() {
+    importToHistoryModal: function(e) {
+        e.preventDefault();
         var $checkedValues = this.findCheckedRows();
+        var template = this.templateImportIntoHistoryModal();
         if ($checkedValues.length === 0) {
             mod_toastr.info("You must select some datasets first.");
         } else {
-            var that = this;
-            this.histories = new mod_library_model.GalaxyHistories();
-            this.histories
-                .fetch()
+            var promise = this.fetchUserHistories();
+            promise
                 .done(() => {
-                    var template = that.templateBulkImportInModal();
-                    that.modal = Galaxy.modal;
-                    that.modal.show({
+                    this.modal = Galaxy.modal;
+                    this.modal.show({
                         closing_events: true,
                         title: _l("Import into History"),
                         body: template({
-                            histories: that.histories.models
+                            histories: this.histories.models
                         }),
                         buttons: {
-                            Import: function() {
-                                that.importAllIntoHistory();
+                            Import: () => {
+                                this.importAllIntoHistory();
                             },
-                            Close: function() {
+                            Close: () => {
                                 Galaxy.modal.hide();
                             }
                         }
@@ -249,84 +246,73 @@ var FolderToolbarView = Backbone.View.extend({
         }
     },
 
-    /**
-     * Import all selected datasets into history.
-     */
+    fetchUserHistories: function() {
+        this.histories = new mod_library_model.GalaxyHistories();
+        var promise = this.histories.fetch();
+        return promise;
+    },
+
     importAllIntoHistory: function() {
         this.modal.disableButton("Import");
         var new_history_name = this.modal.$("input[name=history_name]").val();
-        var that = this;
         if (new_history_name !== "") {
-            $.post(`${Galaxy.root}api/histories`, {
-                name: new_history_name
-            })
+            this.createNewHistory(new_history_name)
                 .done(new_history => {
-                    that.options.last_used_history_id = new_history.id;
-                    that.processImportToHistory(new_history.id, new_history.name);
+                    this.processImportToHistory(new_history.id, new_history.name);
                 })
                 .fail((xhr, status, error) => {
                     mod_toastr.error("An error occurred.");
                 })
                 .always(() => {
-                    that.modal.enableButton("Import");
+                    this.modal.enableButton("Import");
                 });
         } else {
-            var history_id = $("select[name=dataset_import_bulk] option:selected").val();
-            this.options.last_used_history_id = history_id;
-            var history_name = $("select[name=dataset_import_bulk] option:selected").text();
+            var history_id = $("select[name=import_to_history] option:selected").val();
+            var history_name = $("select[name=import_to_history] option:selected").text();
             this.processImportToHistory(history_id, history_name);
             this.modal.enableButton("Import");
         }
     },
 
+    createNewHistory: function(new_history_name) {
+        var promise = $.post(`${Galaxy.root}api/histories`, { name: new_history_name });
+        return promise;
+    },
+
     processImportToHistory: function(history_id, history_name) {
-        var dataset_ids = [];
-        var folder_ids = [];
-        this.findCheckedRows().each(function() {
-            var row_id = $(this)
-                .closest("tr")
-                .data("id");
-            if (row_id.substring(0, 1) == "F") {
-                folder_ids.push(row_id);
-            } else {
-                dataset_ids.push(row_id);
-            }
-        });
+        var checked_items = this.findCheckedItems();
+        var items_to_import = [];
         // prepare the dataset objects to be imported
-        var datasets_to_import = [];
-        for (var i = dataset_ids.length - 1; i >= 0; i--) {
-            var library_dataset_id = dataset_ids[i];
+        for (let i = checked_items.dataset_ids.length - 1; i >= 0; i--) {
+            var library_dataset_id = checked_items.dataset_ids[i];
             var historyItem = new mod_library_model.HistoryItem();
             historyItem.url = `${historyItem.urlRoot + history_id}/contents`;
             historyItem.content = library_dataset_id;
             historyItem.source = "library";
-            datasets_to_import.push(historyItem);
+            items_to_import.push(historyItem);
         }
-
         // prepare the folder objects to be imported
-        var folders_to_import = [];
-        for (var i = folder_ids.length - 1; i >= 0; i--) {
-            var library_folder_id = folder_ids[i];
+        for (let i = checked_items.folder_ids.length - 1; i >= 0; i--) {
+            var library_folder_id = checked_items.folder_ids[i];
             var historyItem = new mod_library_model.HistoryItem();
             historyItem.url = `${historyItem.urlRoot + history_id}/contents`;
             historyItem.content = library_folder_id;
             historyItem.source = "library_folder";
-            datasets_to_import.push(historyItem);
+            items_to_import.push(historyItem);
         }
-
         this.initChainCallControl({
-            length: datasets_to_import.length,
+            length: items_to_import.length,
             action: "to_history",
             history_name: history_name
         });
         // set the used history as current so user will see the last one
         // that he imported into in the history panel on the 'analysis' page
         jQuery.getJSON(`${Galaxy.root}history/set_as_current?id=${history_id}`);
-        this.chainCallImportingIntoHistory(datasets_to_import, history_name);
+        this.chainCallImportingIntoHistory(items_to_import, history_name);
     },
 
     /**
-     * Update the progress bar in modal window.
+     * Update progress bar in modal.
      */
     updateProgress: function() {
         this.progress += this.progressStep;
@@ -336,25 +322,13 @@ var FolderToolbarView = Backbone.View.extend({
     },
 
     /**
-     * download selected datasets
-     * @param  {str} folder_id id of the current folder
+     * Download selected datasets. Called from the router.
      * @param  {str} format    requested archive format
      */
-    download: function(folder_id, format) {
-        var dataset_ids = [];
-        var folder_ids = [];
-        this.findCheckedRows().each(function() {
-            var row_id = $(this)
-                .closest("tr")
-                .data("id");
-            if (row_id.substring(0, 1) == "F") {
-                folder_ids.push(row_id);
-            } else {
-                dataset_ids.push(row_id);
-            }
-        });
+    download: function(format) {
+        var checked_items = this.findCheckedItems();
         var url = `${Galaxy.root}api/libraries/datasets/download/${format}`;
-        var data = { ld_ids: dataset_ids, folder_ids: folder_ids };
+        var data = { ld_ids: checked_items.dataset_ids, folder_ids: checked_items.folder_ids };
         this.processDownload(url, data, "get");
     },
 
@@ -388,33 +362,32 @@ var FolderToolbarView = Backbone.View.extend({
 
     addFilesFromHistoryModal: function() {
         this.histories = new mod_library_model.GalaxyHistories();
-        var self = this;
         this.histories
             .fetch()
             .done(() => {
-                self.modal = Galaxy.modal;
-                var template_modal = self.templateAddFilesFromHistory();
-                self.modal.show({
+                this.modal = Galaxy.modal;
+                var template_modal = this.templateAddFilesFromHistory();
+                this.modal.show({
                     closing_events: true,
                     title: _l("Adding datasets from your history"),
                     body: template_modal({
-                        histories: self.histories.models
+                        histories: this.histories.models
                     }),
                     buttons: {
-                        Add: function() {
-                            self.addAllDatasetsFromHistory();
+                        Add: () => {
+                            this.addAllDatasetsFromHistory();
                         },
-                        Close: function() {
+                        Close: () => {
                             Galaxy.modal.hide();
                         }
                     },
-                    closing_callback: function() {
-                        Galaxy.libraries.library_router.navigate(`folders/${self.id}`, { trigger: true });
+                    closing_callback: () => {
+                        Galaxy.libraries.library_router.navigate(`folders/${this.id}`, { trigger: true });
                     }
                 });
-                self.fetchAndDisplayHistoryContents(self.histories.models[0].id);
+                this.fetchAndDisplayHistoryContents(this.histories.models[0].id);
                 $("#dataset_add_bulk").change(event => {
-                    self.fetchAndDisplayHistoryContents(event.target.value);
+                    this.fetchAndDisplayHistoryContents(event.target.value);
                 });
             })
             .fail((model, response) => {
@@ -428,10 +401,8 @@ var FolderToolbarView = Backbone.View.extend({
 
     /**
      * Create modal for importing from Galaxy path.
-     * This feature is admin-only.
      */
     importFilesFromPathModal: function() {
-        var that = this;
         this.modal = Galaxy.modal;
         var template_modal = this.templateImportPathModal();
         this.modal.show({
@@ -439,16 +410,16 @@ var FolderToolbarView = Backbone.View.extend({
             title: _l("Please enter paths to import"),
             body: template_modal({}),
             buttons: {
-                Import: function() {
-                    that.importFromPathsClicked(that);
+                Import: () => {
+                    this.importFromPathsClicked(this);
                 },
-                Close: function() {
+                Close: () => {
                     Galaxy.modal.hide();
                 }
             },
-            closing_callback: function() {
+            closing_callback: () => {
                 //  TODO: should not trigger routes outside of the router
-                Galaxy.libraries.library_router.navigate(`folders/${that.id}`, {
+                Galaxy.libraries.library_router.navigate(`folders/${this.id}`, {
                     trigger: true
                 });
             }
@@ -458,38 +429,37 @@ var FolderToolbarView = Backbone.View.extend({
 
     /**
      * Request all extensions and genomes from Galaxy
-     * and save them sorted in arrays.
+     * and save them in sorted arrays.
      */
     fetchExtAndGenomes: function() {
-        var that = this;
         mod_utils.get({
             url: `${Galaxy.root}api/datatypes?extension_only=False`,
-            success: function(datatypes) {
-                that.list_extensions = [];
-                for (var key in datatypes) {
-                    that.list_extensions.push({
+            success: datatypes => {
+                this.list_extensions = [];
+                for (let key in datatypes) {
+                    this.list_extensions.push({
                         id: datatypes[key].extension,
                         text: datatypes[key].extension,
                         description: datatypes[key].description,
                         description_url: datatypes[key].description_url
                     });
                 }
-                that.list_extensions.sort((a, b) => (a.id > b.id ? 1 : a.id < b.id ? -1 : 0));
-                that.list_extensions.unshift(that.auto);
+                this.list_extensions.sort((a, b) => (a.id > b.id ? 1 : a.id < b.id ? -1 : 0));
+                this.list_extensions.unshift(this.auto);
             },
             cache: true
         });
         mod_utils.get({
             url: `${Galaxy.root}api/genomes`,
-            success: function(genomes) {
-                that.list_genomes = [];
-                for (var key in genomes) {
-                    that.list_genomes.push({
+            success: genomes => {
+                this.list_genomes = [];
+                for (let key in genomes) {
+                    this.list_genomes.push({
                         id: genomes[key][1],
                         text: genomes[key][0]
                     });
                 }
-                that.list_genomes.sort((a, b) => (a.id > b.id ? 1 : a.id < b.id ? -1 : 0));
+                this.list_genomes.sort((a, b) => (a.id > b.id ? 1 : a.id < b.id ? -1 : 0));
             },
             cache: true
         });
@@ -498,18 +468,15 @@ var FolderToolbarView = Backbone.View.extend({
     renderSelectBoxes: function() {
         // This won't work properly unlesss we already have the data fetched.
         // See this.fetchExtAndGenomes()
-        // TODO switch to common resources:
-        // https://trello.com/c/dIUE9YPl/1933-ui-common-resources-and-data-into-galaxy-object
-        var that = this;
         this.select_genome = new mod_select.View({
             css: "library-genome-select",
-            data: that.list_genomes,
+            data: this.list_genomes,
             container: Galaxy.modal.$el.find("#library_genome_select"),
             value: "?"
         });
         this.select_extension = new mod_select.View({
             css: "library-extension-select",
-            data: that.list_extensions,
+            data: this.list_extensions,
             container: Galaxy.modal.$el.find("#library_extension_select"),
             value: "auto"
         });
@@ -520,7 +487,6 @@ var FolderToolbarView = Backbone.View.extend({
      * on Galaxy. Bind jQuery events.
      */
     importFilesFromGalaxyFolderModal: function(options) {
-        var that = this;
         var template_modal = this.templateBrowserModal();
         this.modal = Galaxy.modal;
         this.modal.show({
@@ -528,16 +494,16 @@ var FolderToolbarView = Backbone.View.extend({
             title: _l("Please select folders or files"),
             body: template_modal({}),
             buttons: {
-                Import: function() {
-                    that.importFromJstreePath(that, options);
+                Import: () => {
+                    this.importFromJstreePath(this, options);
                 },
-                Close: function() {
+                Close: () => {
                     Galaxy.modal.hide();
                 }
             },
-            closing_callback: function() {
+            closing_callback: () => {
                 //  TODO: should not trigger routes outside of the router
-                Galaxy.libraries.library_router.navigate(`folders/${that.id}`, {
+                Galaxy.libraries.library_router.navigate(`folders/${this.id}`, {
                     trigger: true
                 });
             }
@@ -557,7 +523,7 @@ var FolderToolbarView = Backbone.View.extend({
         $("input[type=radio]").change(event => {
             if (event.target.value === "jstree-disable-folders") {
                 options.disabled_jstree_element = "folders";
-                that.renderJstree(options);
+                this.renderJstree(options);
                 $(".jstree-folders-message").hide();
                 $(".jstree-preserve-structure").hide();
                 $(".jstree-files-message").show();
@@ -566,7 +532,7 @@ var FolderToolbarView = Backbone.View.extend({
                 $(".jstree-folders-message").show();
                 $(".jstree-preserve-structure").show();
                 options.disabled_jstree_element = "files";
-                that.renderJstree(options);
+                this.renderJstree(options);
             }
         });
     },
@@ -578,14 +544,13 @@ var FolderToolbarView = Backbone.View.extend({
      * @param  {[type]} options [description]
      */
     renderJstree: function(options) {
-        var that = this;
         this.options = _.extend(this.options, options);
         var target = options.source || "userdir";
         var disabled_jstree_element = this.options.disabled_jstree_element;
         this.jstree = new mod_library_model.Jstree();
         this.jstree.url = `${this.jstree.urlRoot}?target=${target}&format=jstree&disable=${disabled_jstree_element}`;
         this.jstree.fetch({
-            success: function(model, response) {
+            success: (model, response) => {
                 $("#jstree_browser").jstree("destroy");
                 $("#jstree_browser").jstree({
                     core: {
@@ -605,7 +570,7 @@ var FolderToolbarView = Backbone.View.extend({
                     }
                 });
             },
-            error: function(model, response) {
+            error: (model, response) => {
                 if (typeof response.responseJSON !== "undefined") {
                     if (response.responseJSON.err_code === 404001) {
                         mod_toastr.warning(response.responseJSON.err_msg);
@@ -639,7 +604,7 @@ var FolderToolbarView = Backbone.View.extend({
         } else {
             this.modal.disableButton("Import");
             paths = paths.split("\n");
-            for (var i = paths.length - 1; i >= 0; i--) {
+            for (let i = paths.length - 1; i >= 0; i--) {
                 var trimmed = paths[i].trim();
                 if (trimmed.length !== 0) {
                     valid_paths.push(trimmed);
@@ -727,7 +692,7 @@ var FolderToolbarView = Backbone.View.extend({
             mod_toastr.info("Please select some items first.");
         } else {
             this.modal.disableButton("Import");
-            for (var i = selected_nodes.length - 1; i >= 0; i--) {
+            for (let i = selected_nodes.length - 1; i >= 0; i--) {
                 if (selected_nodes[i].li_attr.full_path !== undefined) {
                     paths.push(selected_nodes[i].li_attr.full_path);
                 }
@@ -769,24 +734,23 @@ var FolderToolbarView = Backbone.View.extend({
         var history_contents = new mod_library_model.HistoryContents({
             id: history_id
         });
-        var self = this;
         history_contents.fetch({
-            success: function(history_contents) {
-                var history_contents_template = self.templateHistoryContents();
-                self.histories.get(history_id).set({ contents: history_contents });
-                self.modal.$el.find("#selected_history_content").html(
+            success: history_contents => {
+                var history_contents_template = this.templateHistoryContents();
+                this.histories.get(history_id).set({ contents: history_contents });
+                this.modal.$el.find(".library_selected_history_content").html(
                     history_contents_template({
                         history_contents: history_contents.models.reverse()
                     })
                 );
-                self.modal.$el.find(".history-import-select-all").bind("click", () => {
-                    $("#selected_history_content [type=checkbox]").prop("checked", true);
+                this.modal.$el.find(".history-import-select-all").bind("click", () => {
+                    $(".library_selected_history_content [type=checkbox]").prop("checked", true);
                 });
-                self.modal.$el.find(".history-import-unselect-all").bind("click", () => {
-                    $("#selected_history_content [type=checkbox]").prop("checked", false);
+                this.modal.$el.find(".history-import-unselect-all").bind("click", () => {
+                    $(".library_selected_history_content [type=checkbox]").prop("checked", false);
                 });
             },
-            error: function(model, response) {
+            error: (model, response) => {
                 if (typeof response.responseJSON !== "undefined") {
                     mod_toastr.error(response.responseJSON.err_msg);
                 } else {
@@ -800,7 +764,7 @@ var FolderToolbarView = Backbone.View.extend({
      * Import all selected datasets from history into the current folder.
      */
     addAllDatasetsFromHistory: function() {
-        var checked_hdas = this.modal.$el.find("#selected_history_content").find(":checked");
+        var checked_hdas = this.modal.$el.find(".library_selected_history_content").find(":checked");
         var history_item_ids = []; // can be hda or hdca
         var history_item_types = [];
         var items_to_add = [];
@@ -820,7 +784,7 @@ var FolderToolbarView = Backbone.View.extend({
                     history_item_types.push(item_type);
                 }
             });
-            for (var i = history_item_ids.length - 1; i >= 0; i--) {
+            for (let i = history_item_ids.length - 1; i >= 0; i--) {
                 var history_item_id = history_item_ids[i];
                 var folder_item = new mod_library_model.Item();
                 folder_item.url = `${Galaxy.root}api/folders/${this.options.id}/contents`;
@@ -846,12 +810,11 @@ var FolderToolbarView = Backbone.View.extend({
      * @param  {str} history_name     name of the history to import to
      */
     chainCallImportingIntoHistory: function(history_item_set, history_name) {
-        var self = this;
         var popped_item = history_item_set.pop();
         if (typeof popped_item == "undefined") {
             if (this.options.chain_call_control.failed_number === 0) {
                 mod_toastr.success("Selected datasets imported into history. Click this to start analyzing it.", "", {
-                    onclick: function() {
+                    onclick: () => {
                         window.location = Galaxy.root;
                     }
                 });
@@ -862,7 +825,7 @@ var FolderToolbarView = Backbone.View.extend({
                     "Some of the datasets could not be imported into history. Click this to see what was imported.",
                     "",
                     {
-                        onclick: function() {
+                        onclick: () => {
                             window.location = Galaxy.root;
                         }
                     }
@@ -880,13 +843,13 @@ var FolderToolbarView = Backbone.View.extend({
 
         promise
             .done(() => {
-                self.updateProgress();
-                self.chainCallImportingIntoHistory(history_item_set, history_name);
+                this.updateProgress();
+                this.chainCallImportingIntoHistory(history_item_set, history_name);
             })
             .fail(() => {
-                self.options.chain_call_control.failed_number += 1;
-                self.updateProgress();
-                self.chainCallImportingIntoHistory(history_item_set, history_name);
+                this.options.chain_call_control.failed_number += 1;
+                this.updateProgress();
+                this.chainCallImportingIntoHistory(history_item_set, history_name);
             });
     },
 
@@ -897,7 +860,6 @@ var FolderToolbarView = Backbone.View.extend({
      * @param  {boolean} tag_using_filenames    add tags to datasets using names of files
      */
     chainCallImportingUserdirFiles: function(options) {
-        var that = this;
         var popped_item = options.paths.pop();
         if (typeof popped_item === "undefined") {
             if (this.options.chain_call_control.failed_number === 0) {
@@ -910,9 +872,9 @@ var FolderToolbarView = Backbone.View.extend({
         }
         var promise = $.when(
             $.post(
-                `${Galaxy.root}api/libraries/datasets?encoded_folder_id=${that.id}&source=${
-                    options.source
-                }&path=${popped_item}&file_type=${options.file_type}&link_data=${options.link_data}&space_to_tab=${
+                `${Galaxy.root}api/libraries/datasets?encoded_folder_id=${this.id}&source=${options.source}&path=${
+                    popped_item
+                }&file_type=${options.file_type}&link_data=${options.link_data}&space_to_tab=${
                     options.space_to_tab
                 }&to_posix_lines=${options.to_posix_lines}&dbkey=${options.dbkey}&tag_using_filenames=${
                     options.tag_using_filenames
@@ -921,13 +883,13 @@ var FolderToolbarView = Backbone.View.extend({
         );
         promise
             .done(response => {
-                that.updateProgress();
-                that.chainCallImportingUserdirFiles(options);
+                this.updateProgress();
+                this.chainCallImportingUserdirFiles(options);
             })
             .fail(() => {
-                that.options.chain_call_control.failed_number += 1;
-                that.updateProgress();
-                that.chainCallImportingUserdirFiles(options);
+                this.options.chain_call_control.failed_number += 1;
+                this.updateProgress();
+                this.chainCallImportingUserdirFiles(options);
             });
     },
 
@@ -945,7 +907,6 @@ var FolderToolbarView = Backbone.View.extend({
      */
     chainCallImportingFolders: function(options) {
         // TODO need to check which paths to call
-        var that = this;
         var popped_item = options.paths.pop();
         if (typeof popped_item == "undefined") {
             if (this.options.chain_call_control.failed_number === 0) {
@@ -959,24 +920,24 @@ var FolderToolbarView = Backbone.View.extend({
         }
         var promise = $.when(
             $.post(
-                `${Galaxy.root}api/libraries/datasets?encoded_folder_id=${that.id}&source=${
-                    options.source
-                }&path=${popped_item}&preserve_dirs=${options.preserve_dirs}&link_data=${
-                    options.link_data
-                }&to_posix_lines=${options.to_posix_lines}&space_to_tab=${options.space_to_tab}&file_type=${
-                    options.file_type
-                }&dbkey=${options.dbkey}&tag_using_filenames=${options.tag_using_filenames}`
+                `${Galaxy.root}api/libraries/datasets?encoded_folder_id=${this.id}&source=${options.source}&path=${
+                    popped_item
+                }&preserve_dirs=${options.preserve_dirs}&link_data=${options.link_data}&to_posix_lines=${
+                    options.to_posix_lines
+                }&space_to_tab=${options.space_to_tab}&file_type=${options.file_type}&dbkey=${
+                    options.dbkey
+                }&tag_using_filenames=${options.tag_using_filenames}`
             )
         );
         promise
             .done(response => {
-                that.updateProgress();
-                that.chainCallImportingFolders(options);
+                this.updateProgress();
+                this.chainCallImportingFolders(options);
             })
             .fail(() => {
-                that.options.chain_call_control.failed_number += 1;
-                that.updateProgress();
-                that.chainCallImportingFolders(options);
+                this.options.chain_call_control.failed_number += 1;
+                this.updateProgress();
+                this.chainCallImportingFolders(options);
             });
     },
 
@@ -986,7 +947,6 @@ var FolderToolbarView = Backbone.View.extend({
      * @param  {array} hdas_set array of empty hda objects
      */
     chainCallAddingHdas: function(hdas_set) {
-        var self = this;
         this.added_hdas = new mod_library_model.Folder();
         var popped_item = hdas_set.pop();
         if (typeof popped_item == "undefined") {
@@ -1009,13 +969,13 @@ var FolderToolbarView = Backbone.View.extend({
         promise
             .done(model => {
                 Galaxy.libraries.folderListView.collection.add(model);
-                self.updateProgress();
-                self.chainCallAddingHdas(hdas_set);
+                this.updateProgress();
+                this.chainCallAddingHdas(hdas_set);
             })
             .fail(() => {
-                self.options.chain_call_control.failed_number += 1;
-                self.updateProgress();
-                self.chainCallAddingHdas(hdas_set);
+                this.options.chain_call_control.failed_number += 1;
+                this.updateProgress();
+                this.chainCallAddingHdas(hdas_set);
             });
     },
 
@@ -1025,7 +985,6 @@ var FolderToolbarView = Backbone.View.extend({
      * @param  {array} lddas_set array of lddas to delete
      */
     chainCallDeletingItems: function(items_to_delete) {
-        var self = this;
         this.deleted_items = new mod_library_model.Folder();
         var item_to_delete = items_to_delete.pop();
         if (typeof item_to_delete === "undefined") {
@@ -1047,7 +1006,7 @@ var FolderToolbarView = Backbone.View.extend({
             .destroy()
             .done(item => {
                 Galaxy.libraries.folderListView.collection.remove(item_to_delete.id);
-                self.updateProgress();
+                this.updateProgress();
                 // add the deleted item to collection, triggers rendering
                 if (Galaxy.libraries.folderListView.options.include_deleted) {
                     var updated_item = null;
@@ -1061,12 +1020,12 @@ var FolderToolbarView = Backbone.View.extend({
                     }
                     Galaxy.libraries.folderListView.collection.add(updated_item);
                 }
-                self.chainCallDeletingItems(items_to_delete);
+                this.chainCallDeletingItems(items_to_delete);
             })
             .fail(() => {
-                self.options.chain_call_control.failed_number += 1;
-                self.updateProgress();
-                self.chainCallDeletingItems(items_to_delete);
+                this.options.chain_call_control.failed_number += 1;
+                this.updateProgress();
+                this.chainCallDeletingItems(items_to_delete);
             });
     },
 
@@ -1102,7 +1061,7 @@ var FolderToolbarView = Backbone.View.extend({
                 title: _l("Deleting selected items"),
                 body: template({}),
                 buttons: {
-                    Close: function() {
+                    Close: () => {
                         Galaxy.modal.hide();
                     }
                 }
@@ -1129,13 +1088,13 @@ var FolderToolbarView = Backbone.View.extend({
 
             // prepare the dataset items to be added
             var items_to_delete = [];
-            for (var i = dataset_ids.length - 1; i >= 0; i--) {
+            for (let i = dataset_ids.length - 1; i >= 0; i--) {
                 var dataset = new mod_library_model.Item({
                     id: dataset_ids[i]
                 });
                 items_to_delete.push(dataset);
             }
-            for (var i = folder_ids.length - 1; i >= 0; i--) {
+            for (let i = folder_ids.length - 1; i >= 0; i--) {
                 var folder = new mod_library_model.FolderAsModel({
                     id: folder_ids[i]
                 });
@@ -1150,7 +1109,6 @@ var FolderToolbarView = Backbone.View.extend({
 
     showLocInfo: function() {
         var library = null;
-        var that = this;
         if (Galaxy.libraries.libraryListView !== null) {
             library = Galaxy.libraries.libraryListView.collection.get(this.options.parent_library_id);
             this.showLocInfoModal(library);
@@ -1159,8 +1117,8 @@ var FolderToolbarView = Backbone.View.extend({
                 id: this.options.parent_library_id
             });
             library.fetch({
-                success: function() {
-                    that.showLocInfoModal(library);
+                success: () => {
+                    this.showLocInfoModal(library);
                 },
                 error: function(model, response) {
                     if (typeof response.responseJSON !== "undefined") {
@@ -1174,15 +1132,14 @@ var FolderToolbarView = Backbone.View.extend({
     },
 
     showLocInfoModal: function(library) {
-        var that = this;
         var template = this.templateLocInfoInModal();
         this.modal = Galaxy.modal;
         this.modal.show({
             closing_events: true,
             title: _l("Location Details"),
-            body: template({ library: library, options: that.options }),
+            body: template({ library: library, options: this.options }),
             buttons: {
-                Close: function() {
+                Close: () => {
                     Galaxy.modal.hide();
                 }
             }
@@ -1238,6 +1195,175 @@ var FolderToolbarView = Backbone.View.extend({
         return $("#folder_list_body").find(":checked");
     },
 
+    findCheckedItems: function() {
+        var folder_ids = [];
+        var dataset_ids = [];
+        this.findCheckedRows().each(function() {
+            var row_id = $(this)
+                .closest("tr")
+                .data("id");
+            if (row_id.substring(0, 1) == "F") {
+                folder_ids.push(row_id);
+            } else {
+                dataset_ids.push(row_id);
+            }
+        });
+        return { folder_ids: folder_ids, dataset_ids: dataset_ids };
+    },
+
+    showCollectionSelect: function(e) {
+        e.preventDefault();
+        var checked_items = this.findCheckedItems();
+        var template = this.templateCollectionSelectModal();
+        this.modal = Galaxy.modal;
+        this.modal.show({
+            closing_events: true,
+            title: "Create History Collection from Datasets",
+            body: template({selected_datasets: checked_items.dataset_ids.length}),
+            buttons: {
+                Continue: () => {
+                    this.showColectionBuilder(checked_items.dataset_ids);
+                },
+                Close: () => {
+                    Galaxy.modal.hide();
+                }
+            }
+        });
+        this.prepareCollectionTypeSelect();
+        this.prepareHistoryTypeSelect();
+    },
+
+    prepareCollectionTypeSelect: function() {
+        this.collectionType = "list";
+        this.select_collection_type = new mod_select.View({
+            css: "library-collection-type-select",
+            container: this.modal.$el.find(".library-collection-type-select"),
+            data: [
+                { id: "list", text: "List" },
+                { id: "paired", text: "Paired" },
+                { id: "list:paired", text: "List of Pairs" }
+            ],
+            value: "list",
+            onchange: collectionType => {
+                this.updateCollectionType(collectionType);
+            }
+        });
+    },
+
+    prepareHistoryTypeSelect: function() {
+        var promise = this.fetchUserHistories();
+        promise.done(() => {
+            var history_options = [];
+            for (let i = this.histories.length - 1; i >= 0; i--) {
+                history_options.unshift({
+                    id: this.histories.models[i].id,
+                    text: this.histories.models[i].get("name")
+                });
+            }
+            this.select_collection_history = new mod_select.View({
+                css: "library-collection-history-select",
+                container: this.modal.$el.find(".library-collection-history-select"),
+                data: history_options,
+                value: history_options[0].id
+            });
+        });
+    },
+
+    /** Update collection type */
+    updateCollectionType: function(collectionType) {
+        this.collectionType = collectionType;
+    },
+
+    showColectionBuilder: function(checked_items) {
+        let collection_elements = [];
+        let elements_source = this.modal.$('input[type="radio"]:checked').val();
+        if (elements_source === "selection") {
+            for (let i = checked_items.length - 1; i >= 0; i--) {
+                let collection_item = {};
+                let dataset = Galaxy.libraries.folderListView.folder_container.get("folder").get(checked_items[i]);
+                collection_item.id = checked_items[i];
+                collection_item.name = dataset.get("name");
+                collection_item.deleted = dataset.get("deleted");
+                collection_item.state = dataset.get("state");
+                collection_elements.push(collection_item);
+            }
+        } else if (elements_source === "folder") {
+            collection_elements = new Backbone.Collection(
+                Galaxy.libraries.folderListView.folder_container.get("folder").where({type: "file"})
+            ).toJSON();
+        }
+        let new_history_name = this.modal.$("input[name=history_name]").val();
+        if (new_history_name !== "") {
+            this.createNewHistory(new_history_name)
+                .done(new_history => {
+                    mod_toastr.success("History created");
+                    this.collectionImport(collection_elements, new_history.id, new_history.name);
+                })
+                .fail((xhr, status, error) => {
+                    mod_toastr.error("An error occurred.");
+                });
+        } else {
+            let selected_history_id = this.select_collection_history.value();
+            let selected_history_name = this.select_collection_history.text();
+            this.collectionImport(collection_elements, selected_history_id, selected_history_name);
+        }
+    },
+
+    collectionImport: function(collection_elements, history_id, history_name) {
+        let modal_title = `Creating Collection in ${history_name}`;
+        let creator_class;
+        let creationFn;
+        if (this.collectionType === "list"){
+            creator_class = LIST_CREATOR.ListCollectionCreator;
+            creationFn = (elements, name, hideSourceItems) => {
+                elements = elements.map(element => ({
+                    id: element.id,
+                    name: element.name,
+                    src: "ldda"
+                }));
+                return this.createHDCA(elements, this.collectionType, name, hideSourceItems, history_id);
+            };
+            LIST_CREATOR.collectionCreatorModal(
+            collection_elements,
+            {creationFn: creationFn, title: modal_title, defaultHideSourceItems: true},
+            creator_class
+            );
+        } else if (this.collectionType === "paired"){
+            creator_class = PAIR_CREATOR.PairCollectionCreator;
+            creationFn = (elements, name, hideSourceItems) => {
+                elements = [
+                { name: "forward", src: "ldda", id: elements[0].id },
+                { name: "reverse", src: "ldda", id: elements[1].id }
+                ];
+                return this.createHDCA(elements, this.collectionType, name, hideSourceItems, history_id);
+            };
+            LIST_CREATOR.collectionCreatorModal(
+            collection_elements,
+            {creationFn: creationFn, title: modal_title, defaultHideSourceItems: true},
+            creator_class
+            );
+        } else if (this.collectionType === "list:paired"){
+            let elements = collection_elements.map(element => ({
+                    id: element.id,
+                    name: element.name,
+                    src: "ldda"
+                }));
+            PAIRED_CREATOR.pairedCollectionCreatorModal(elements, {historyId: history_id, title: modal_title, defaultHideSourceItems: true});
+        }
+    },
+
+    createHDCA: function(elementIdentifiers, collectionType, name, hideSourceItems, history_id, options) {
+        let hdca = new HDCA_MODEL.HistoryDatasetCollection({
+            history_content_type: "dataset_collection",
+            collection_type: collectionType,
+            history_id: history_id,
+            name: name,
+            hide_source_items: hideSourceItems || false,
+            element_identifiers: elementIdentifiers
+        });
+        return hdca.save(options);
+    },
+
     templateToolBar: function() {
         return _.template(
             [
@@ -1249,18 +1375,21 @@ var FolderToolbarView = Backbone.View.extend({
                 "<span><strong>DATA LIBRARIES</strong></span>",
                 // paginator will append here
                 '<span class="library-paginator folder-paginator"></span>',
+                // include deleted checkbox
                 '<div class="checkbox toolbar-item logged-dataset-manipulation" style="height: 20px; display:none;">',
                 "<label>",
-                '<input id="include_deleted_datasets_chk" type="checkbox">include deleted</input>',
+                '<input type="checkbox" class="include-deleted-datasets-chk">include deleted</input>',
                 "</label>",
                 "</div>",
-                '<button style="display:none;" data-toggle="tooltip" data-placement="top" title="Create New Folder" id="toolbtn_create_folder" class="btn btn-default primary-button add-library-items toolbar-item" type="button">',
-                '<span class="fa fa-plus"></span><span class="fa fa-folder"></span>',
+                // create new folder button
+                '<button style="display:none;" data-toggle="tooltip" data-placement="top" title="Create New Folder" class="btn btn-default primary-button toolbtn-create-folder add-library-items add-library-items-folder toolbar-item" type="button">',
+                '<span class="fa fa-plus"></span><span class="fa fa-folder"></span> Create Folder ',
                 "</button>",
+                // add datasets button
                 "<% if(mutiple_add_dataset_options) { %>",
-                '<div class="btn-group add-library-items" style="display:none;">',
+                '<div class="btn-group add-library-items add-library-items-datasets toolbar-item" style="display:none;">',
                 '<button title="Add Datasets to Current Folder" id="" type="button" class="primary-button dropdown-toggle" data-toggle="dropdown">',
-                '<span class="fa fa-plus"></span><span class="fa fa-file"></span><span class="caret"></span>',
+                '<span class="fa fa-plus"></span><span class="fa fa-file"></span> Add Datasets <span class="caret"></span>',
                 "</button>",
                 '<ul class="dropdown-menu" role="menu">',
                 '<li><a href="#folders/<%= id %>/import/history"> from History</a></li>',
@@ -1280,17 +1409,24 @@ var FolderToolbarView = Backbone.View.extend({
                 "</ul>",
                 "</div>",
                 "<% } else { %>",
-                '<a  data-placement="top" title="Add Datasets to Current Folder" style="display:none;" class="btn btn-default add-library-items" href="#folders/<%= id %>/import/history" role="button">',
+                '<a data-placement="top" title="Add Datasets to Current Folder" style="display:none;" class="btn btn-default add-library-items add-library-items-datasets" href="#folders/<%= id %>/import/history" role="button">',
                 '<span class="fa fa-plus"></span><span class="fa fa-file"></span>',
                 "</a>",
                 "<% } %>",
-                '<button data-toggle="tooltip" data-placement="top" title="Import selected datasets into history" id="toolbtn_bulk_import" class="primary-button dataset-manipulation" style="margin-left: 0.5em; display:none;" type="button">',
-                '<span class="fa fa-book"></span>',
-                "&nbsp;to History",
+                // import to history button
+                '<div class="btn-group toolbar-item">',
+                '<button title="Import to history" type="button" class="primary-button dropdown-toggle add-to-history" data-toggle="dropdown">',
+                '<span class="fa fa-book"></span> To History <span class="caret"></span>',
                 "</button>",
-                '<div class="btn-group dataset-manipulation" style="margin-left: 0.5em; display:none; ">',
-                '<button title="Download selected items as archive" type="button" class="primary-button dropdown-toggle" data-toggle="dropdown">',
-                '<span class="fa fa-download"></span> Download <span class="caret"></span>',
+                '<ul class="dropdown-menu" role="menu">',
+                '<li><a href="" class="toolbtn-bulk-import add-to-history-datasets">as Datasets</a></li>',
+                '<li><a href="" class="toolbtn-collection-import add-to-history-collection">as a Collection</a></li>',
+                "</ul>",
+                "</div>",
+                // download button
+                '<div class="btn-group dataset-manipulation toolbar-item" style="display:none; ">',
+                '<button title="Download items as archive" type="button" class="primary-button dropdown-toggle" data-toggle="dropdown">',
+                '<span class="fa fa-save"></span> Download <span class="caret"></span>',
                 "</button>",
                 '<ul class="dropdown-menu" role="menu">',
                 '<li><a href="#/folders/<%= id %>/download/tgz">.tar.gz</a></li>',
@@ -1298,13 +1434,12 @@ var FolderToolbarView = Backbone.View.extend({
                 '<li><a href="#/folders/<%= id %>/download/zip">.zip</a></li>',
                 "</ul>",
                 "</div>",
-                '<button data-toggle="tooltip" data-placement="top" title="Mark selected items deleted" id="toolbtn_bulk_delete" class="primary-button logged-dataset-manipulation" style="margin-left: 0.5em; display:none; " type="button">',
-                '<span class="fa fa-times"></span> Delete</button>',
-                '<button data-id="<%- id %>" data-toggle="tooltip" data-placement="top" title="Show location details" class="primary-button toolbtn-show-locinfo" style="margin-left: 0.5em;" type="button">',
-                '<span class="fa fa-info-circle"></span>',
-                "&nbsp;Details",
+                // delete button
+                '<button data-toggle="tooltip" data-placement="top" title="Mark items deleted" class="primary-button toolbtn-bulk-delete logged-dataset-manipulation toolbar-item" style="display:none;" type="button">',
+                '<span class="fa fa-trash"></span> Delete',
                 "</button>",
-                '<span class="help-button" data-toggle="tooltip" data-placement="top" title="See this screen annotated">',
+                // help button
+                '<span class="right-float" data-toggle="tooltip" data-placement="top" title="See this screen annotated">',
                 '<a href="https://galaxyproject.org/data-libraries/screen/folder-contents/" target="_blank">',
                 '<button class="primary-button" type="button">',
                 '<span class="fa fa-question-circle"></span>',
@@ -1312,13 +1447,20 @@ var FolderToolbarView = Backbone.View.extend({
                 "</button>",
                 "</a>",
                 "</span>",
+                // location button
+                '<span class="right-float" data-toggle="tooltip" data-placement="top" title="Show location details">',
+                '<button data-id="<%- id %>" class="primary-button toolbtn-show-locinfo toolbar-item" type="button">',
+                '<span class="fa fa-info-circle"></span>',
+                "&nbsp;Details",
+                "</button>",
+                "</span>",
+                // toolbar end
                 "</div>",
                 "</form>",
-                // toolbar end
-                '<div id="folder_items_element">',
-                "</div>",
+                // folder contents will append here
+                '<div id="folder_items_element" />',
                 // paginator will append here
-                '<div class="folder-paginator paginator-bottom"></div>',
+                '<div class="folder-paginator paginator-bottom" />',
                 // container end
                 "</div>"
             ].join("")
@@ -1403,13 +1545,13 @@ var FolderToolbarView = Backbone.View.extend({
         );
     },
 
-    templateBulkImportInModal: function() {
+    templateImportIntoHistoryModal: function() {
         return _.template(
             [
                 "<div>",
                 '<div class="library-modal-item">',
                 "Select history: ",
-                '<select id="dataset_import_bulk" name="dataset_import_bulk" style="width:50%; margin-bottom: 1em; " autofocus>',
+                '<select name="import_to_history" style="width:50%; margin-bottom: 1em; " autofocus>',
                 "<% _.each(histories, function(history) { %>",
                 '<option value="<%= _.escape(history.get("id")) %>"><%= _.escape(history.get("name")) %></option>',
                 "<% }); %>",
@@ -1417,8 +1559,7 @@ var FolderToolbarView = Backbone.View.extend({
                 "</div>",
                 '<div class="library-modal-item">',
                 "or create new: ",
-                '<input type="text" name="history_name" value="" placeholder="name of the new history" style="width:50%;">',
-                "</input>",
+                '<input type="text" name="history_name" value="" placeholder="name of the new history" style="width:50%;" />',
                 "</div>",
                 "</div>"
             ].join("")
@@ -1584,7 +1725,7 @@ var FolderToolbarView = Backbone.View.extend({
                 "</select>",
                 "</div>",
                 "<br/>",
-                '<div id="selected_history_content">',
+                '<div class="library_selected_history_content">',
                 "</div>",
                 "</div>"
             ].join("")
@@ -1669,13 +1810,61 @@ var FolderToolbarView = Backbone.View.extend({
                 "<% } %>",
                 "</ul>",
                 "<span>",
-                ' <%- items_shown %> items shown <a href="" data-toggle="tooltip" data-placement="top" title="currently <%- folder_page_size %> per page" class="page_size_prompt">(change)</a>',
+                ' <%- items_shown %> items shown <a href="" data-toggle="tooltip" data-placement="top" title="currently <%- folder_page_size %> per page" class="page-size-prompt">(change)</a>',
                 "</span>",
                 "<span>",
                 " <%- total_items_count %> total",
                 "</span>"
             ].join("")
         );
+    },
+
+    templateCollectionSelectModal: function() {
+        return _.template(
+            [
+                "<div>",
+                // elements selection
+                '<div class="library-modal-item">',
+                "<h4>Which datasets?</h4>",
+                '<form class="form-inline">',
+                '<label class="radio-inline">',
+                '<input type="radio" name="radio_elements" id="selection_radio" value="selection" <% if (!selected_datasets) { %> disabled <% } else { %> checked <% } %> > current selection',
+                "<% if (selected_datasets) { %>",
+                " (<%- selected_datasets %>)",
+                "<% } %>",
+                "</label>",
+                '<label class="radio-inline">',
+                '<input type="radio" name="radio_elements" id="folder_radio" value="folder" <% if (!selected_datasets) { %> checked <% } %> > all datasets in current folder',
+                "</label>",
+                "</form>",
+                "</div>",
+                // type selection
+                '<div class="library-modal-item">',
+                "<h4>Collection type</h4>",
+                '<span class="library-collection-type-select"/>',
+                "<h5>Which type to choose?</h5>",
+                "<ul>",
+                "<li>",
+                "List: Generic collection which groups any number of datasets into a set; similar to file system folder.",
+                "</li>",
+                "<li>",
+                "Paired: Simple collection containing exactly two sequence datasets; one reverse and the other forward.",
+                "</li>",
+                "<li>",
+                "List of Pairs: Advanced collection containing any number of Pairs; imagine as Pair-type collections inside of a List-type collection.",
+                "</li>",
+                "</ul>",
+                "</div>",
+                // history selection/creation
+                '<div class="library-modal-item">',
+                "<h4>Select history</h4>",
+                '<span class="library-collection-history-select"/>',
+                " or create new: ",
+                '<input type="text" name="history_name" value="" placeholder="name of the new history" />',
+                "</div>",
+                "</div>"
+            ].join("")
+        );
     }
 });
 
diff --git a/client/galaxy/scripts/mvc/ui/ui-modal.js b/client/galaxy/scripts/mvc/ui/ui-modal.js
index 841c2aca079..b2014dc99d6 100644
--- a/client/galaxy/scripts/mvc/ui/ui-modal.js
+++ b/client/galaxy/scripts/mvc/ui/ui-modal.js
@@ -39,17 +39,16 @@ export var View = Backbone.View.extend({
         if (!this.visible) {
             this.visible = true;
             this.$el.fadeIn("fast");
-            if (this.options.closing_events) {
-                var self = this;
-                $(document).on("keyup.ui-modal", e => {
-                    if (e.keyCode == 27) {
-                        self.hide(true);
-                    }
-                });
-                this.$backdrop.on("click", () => {
-                    self.hide(true);
-                });
-            }
+        }
+        if (this.options.closing_events) {
+            $(document).on("keyup.ui-modal", e => {
+                if (e.keyCode == 27) {
+                    this.hide(true);
+                }
+            });
+            this.$backdrop.on("click", () => {
+                this.hide(true);
+            });
         }
     },
 
diff --git a/client/galaxy/style/less/library.less b/client/galaxy/style/less/library.less
index ccebc0e528c..d5fb0c09562 100644
--- a/client/galaxy/style/less/library.less
+++ b/client/galaxy/style/less/library.less
@@ -104,7 +104,7 @@ th.button_heading{
         margin-right: 0.2em;
     }
     .toolbar-item{
-        margin-left: 1em;
+        margin-left: 0.5em;
     }
 }
 #libraries_element, #folder_items_element{
@@ -112,7 +112,7 @@ th.button_heading{
         margin-left: 0.5em;
     }
 }
-.help-button{
+.right-float{
     float: right;
 }
 .pagination-sm{
@@ -128,11 +128,6 @@ th.button_heading{
 .libimport-select-all{
     margin-left: 0.5em;
 }
-.library-modal-item{
-    width:90%;
-    margin-left: 1em;
-    margin-right: 1em;
-}
 .paginator-bottom{
     width: 27em;
     margin-left: auto;
@@ -143,60 +138,26 @@ th.button_heading{
 }
 
 // Extra style for Galaxy modal
-.modal-content #selected_history_content{
-    ul{
-        list-style-type: none;
+.modal-content{
+    .library_selected_history_content{
+        ul{
+            list-style-type: none;
+        }
+    }
+    .library-collection-type-select, .library-collection-history-select{
+        margin-left:auto;
+        margin-right:auto;
+        width:200px;
+        min-width:200px;
+    }
+    .library-modal-item{
+        width:90%;
+        margin-left: auto;
+        margin-right: auto;
+        margin-top: 1.5em;
     }
 }
 
-// Follows the style for the deprecated admin libraries interface
-#library-grid{
-    ul{
-        list-style: none;
-    }
-    span.expandLink{
-        padding-left: 12px;
-        display: inline-block;
-        vertical-align: middle;
-        background: url(../images/silk/resultset_next.png) no-repeat;
-    }
-    .folderRow.expanded span.expandLink{
-        background: url(../images/silk/resultset_bottom.png) no-repeat;
-    }
-    .folderRow span.rowIcon{
-        float: left;
-        margin-right: 5px;
-        width: 16px;
-        height: 16px;
-        display: inline-block;
-        vertical-align: middle;
-        background: url(../images/silk/folder.png);
-    }
-    .libraryItem-error{
-        margin-right: 2px;
-        padding: 0 2px 0 2px;
-        border: 1px solid @state-danger-border;
-        background: @state-danger-bg;
-    }
-    .libraryItem-queued{
-        margin-right: 2px;
-        padding: 0 2px 0 2px;
-        border: 1px solid @state-default-border;
-        background: @state-default-bg;
-    }
-    .libraryItem-running{
-        margin-right: 2px;
-        padding: 0 2px 0 2px;
-        border: 1px solid @state-running-border;
-        background: @state-running-bg;
-    }
-    .libraryItem-upload{
-        margin-right: 2px;
-        padding: 0 2px 0 2px;
-        border: 1px solid @state-upload-border;
-        background: @state-upload-bg;
-    }
-}
 .libraryTitle{
     th{
         text-align: left;
diff --git a/static/scripts/bundled/admin.bundled.js b/static/scripts/bundled/admin.bundled.js
index 7b414921043..c625ce8377d 100644
--- a/static/scripts/bundled/admin.bundled.js
+++ b/static/scripts/bundled/admin.bundled.js
@@ -1 +1 @@
-webpackJsonp([2],{100:function(e,t,a){"use strict";(function(e,s){function i(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var n=a(13),r=i(n),o=a(6),l=i(o),d=e.View.extend({initialize:function(t){this.model=new e.Model(t),this.url=this.model.get("url"),this.redirect=this.model.get("redirect"),this.setElement("<div/>"),this.render()},render:function(){var e=this;s.ajax({url:Galaxy.root+this.url,type:"GET"}).done(function(t){var a=s.extend({},e.model.attributes,t),i=new r.default({title:a.title,message:a.message,status:a.status||"warning",icon:a.icon,initial_errors:!0,errors:a.errors,inputs:a.inputs,buttons:{submit:new l.default.Button({tooltip:a.submit_tooltip,title:a.submit_title||"Save",icon:a.submit_icon||"fa-save",cls:"btn btn-primary ui-clear-float",onclick:function(){e._submit(i)}})}});e.$el.empty().append(i.$el)}).fail(function(t){e.$el.empty().append(new l.default.Message({message:"Failed to load resource "+e.url+".",status:"danger",persistent:!0}).$el)})},_submit:function(e){var t=this;s.ajax({url:Galaxy.root+t.url,data:JSON.stringify(e.data.create()),type:"PUT",contentType:"application/json"}).done(function(a){var i={};a.id?i.id=a.id:i={message:a.message,status:"success",persistent:!1},t.redirect?window.location=Galaxy.root+t.redirect+"?"+s.param(i):(e.data.matchModel(a,function(t,a){e.field_list[a].value(t.value)}),t._showMessage(e,success_message))}).fail(function(a){t._showMessage(e,{message:a.responseJSON.err_msg,status:"danger",persistent:!1})})},_showMessage:function(e,t){e.$el.parents().filter(function(){return-1!=["auto","scroll"].indexOf(s(this).css("overflow"))}).first().animate({scrollTop:0},500),e.message.update(t)}});t.default={View:d}}).call(t,a(2),a(0))},279:function(e,t,a){"use strict";(function(e){function t(e){return e&&e.__esModule?e:{default:e}}var s=a(3),i=t(s),n=a(0),r=t(n),o=a(64),l=t(o),d=a(280),u=t(d),c=a(100),_=t(c),f=a(24),m=t(f),g=a(25),p=t(g),h=a(87),v=t(h),y=a(5),b=t(y),w=a(43),x=t(w),M=a(281),$=t(M),G=a(286),C=t(G),q=a(63),j=t(q),P=r.default;window.app=function(t,a){window.Galaxy=new l.default.GalaxyApp(t,a),Galaxy.debug("admin app");var s=v.default.extend({routes:{"(/)admin(/)users":"show_users","(/)admin(/)roles":"show_roles","(/)admin(/)groups":"show_groups","(/)admin(/)tool_versions":"show_tool_versions","(/)admin(/)quotas":"show_quotas","(/)admin(/)repositories":"show_repositories","(/)admin(/)forms":"show_forms","(/)admin(/)form(/)(:form_id)":"show_form","(/)admin/api_keys":"show_user_api_keys","(/)admin/data_tables":"show_data_tables"},authenticate:function(){return Galaxy.user&&Galaxy.user.id&&Galaxy.user.get("is_admin")},show_users:function(){this.page.display(new m.default({url_base:Galaxy.root+"admin/users_list",url_data:Galaxy.params}))},show_roles:function(){this.page.display(new m.default({url_base:Galaxy.root+"admin/roles_list",url_data:Galaxy.params}))},show_groups:function(){this.page.display(new m.default({url_base:Galaxy.root+"admin/groups_list",url_data:Galaxy.params}))},show_repositories:function(){this.page.display(new m.default({url_base:Galaxy.root+"admin_toolshed/browse_repositories",url_data:Galaxy.params}))},show_tool_versions:function(){this.page.display(new m.default({url_base:Galaxy.root+"admin/tool_versions_list",url_data:Galaxy.params}))},show_quotas:function(){this.page.display(new m.default({url_base:Galaxy.root+"admin/quotas_list",url_data:Galaxy.params}))},show_user_api_keys:function(){var e=document.createElement("div");this.page.display(e),new j.default($.default).$mount(e)},show_data_tables:function(){var e=document.createElement("div");this.page.display(e),new j.default(C.default).$mount(e)},show_forms:function(){this.page.display(new m.default({url_base:Galaxy.root+"forms/forms_list",url_data:Galaxy.params}))},show_form:function(e){var t="?id="+p.default.get("id"),a={reset_user_password:{title:(0,i.default)("Reset passwords"),url:"admin/reset_user_password"+t,icon:"fa-user",submit_title:"Save new password",redirect:"admin/users"},manage_roles_and_groups_for_user:{url:"admin/manage_roles_and_groups_for_user"+t,icon:"fa-users",redirect:"admin/users"},manage_users_and_groups_for_role:{url:"admin/manage_users_and_groups_for_role"+t,redirect:"admin/roles"},manage_users_and_roles_for_group:{url:"admin/manage_users_and_roles_for_group"+t,redirect:"admin/groups"},manage_users_and_groups_for_quota:{url:"admin/manage_users_and_groups_for_quota"+t,redirect:"admin/quotas"},create_role:{url:"admin/create_role",redirect:"admin/roles"},create_group:{url:"admin/create_group",redirect:"admin/groups"},create_quota:{url:"admin/create_quota",redirect:"admin/quotas"},rename_role:{url:"admin/rename_role"+t,redirect:"admin/roles"},rename_group:{url:"admin/rename_group"+t,redirect:"admin/groups"},rename_quota:{url:"admin/rename_quota"+t,redirect:"admin/quotas"},edit_quota:{url:"admin/edit_quota"+t,redirect:"admin/quotas"},set_quota_default:{url:"admin/set_quota_default"+t,redirect:"admin/quotas"},create_form:{url:"forms/create_form",redirect:"admin/forms"},edit_form:{url:"forms/edit_form"+t,redirect:"admin/forms"}};this.page.display(new _.default.View(a[e]))}});P(function(){e.extend(t.config,{active_view:"admin"}),b.default.setWindowTitle("Administration"),Galaxy.page=new x.default.View(e.extend(t,{Left:u.default,Router:s}))})}}).call(t,a(1))},280:function(e,t,a){"use strict";(function(e,s,i){Object.defineProperty(t,"__esModule",{value:!0});var n=a(3),r=function(e){return e&&e.__esModule?e:{default:e}}(n),o=e.View.extend({initialize:function(t,a){var s=this;this.page=t,this.root=a.root,this.config=a.config,this.settings=a.settings,this.message=a.message,this.status=a.status,this.model=new e.Model({title:(0,r.default)("Administration")}),this.categories=new e.Collection([{title:(0,r.default)("Server"),items:[{title:(0,r.default)("Data types"),url:"admin/view_datatypes_registry"},{title:(0,r.default)("Data tables"),url:"admin/data_tables",target:"__use_router__"},{title:(0,r.default)("Display applications"),url:"admin/display_applications"},{title:(0,r.default)("Manage jobs"),url:"admin/jobs"},{title:(0,r.default)("Local data"),url:"data_manager"}]},{title:(0,r.default)("User Management"),items:[{title:(0,r.default)("Users"),url:"admin/users",target:"__use_router__"},{title:(0,r.default)("Quotas"),url:"admin/quotas",target:"__use_router__",enabled:s.config.enable_quotas},{title:(0,r.default)("Groups"),url:"admin/groups",target:"__use_router__"},{title:(0,r.default)("Roles"),url:"admin/roles",target:"__use_router__"},{title:(0,r.default)("Forms"),url:"admin/forms",target:"__use_router__"},{title:(0,r.default)("API keys"),url:"admin/api_keys",target:"__use_router__"},{title:(0,r.default)("Impersonate a user"),url:"admin/impersonate",enabled:s.config.allow_user_impersonation}]},{title:(0,r.default)("Tool Management"),items:[{title:(0,r.default)("Install new tools"),url:"admin_toolshed/browse_tool_sheds",enabled:s.settings.is_tool_shed_installed},{title:"Install new tools (Beta)",url:"admin_toolshed/browse_toolsheds",enabled:s.settings.is_tool_shed_installed&&s.config.enable_beta_ts_api_install},{title:(0,r.default)("Monitor installation"),url:"admin_toolshed/monitor_repository_installation",enabled:s.settings.installing_repository_ids},{title:(0,r.default)("Manage tools"),url:"admin/repositories",enabled:s.settings.is_repo_installed,target:"__use_router__"},{title:(0,r.default)("Manage metadata"),url:"admin_toolshed/reset_metadata_on_selected_installed_repositories",enabled:s.settings.is_repo_installed},{title:(0,r.default)("Manage whitelist"),url:"admin/sanitize_whitelist"},{title:(0,r.default)("Manage dependencies"),url:"admin/manage_tool_dependencies"},{title:(0,r.default)("View lineage"),url:"admin/tool_versions",target:"__use_router__"},{title:(0,r.default)("View migration stages"),url:"admin/review_tool_migration_stages"},{title:(0,r.default)("View error logs"),url:"admin/tool_errors"}]}]),this.setElement(this._template())},render:function(){var e=this;this.$el.empty(),this.categories.each(function(t){var a=s(e._templateSection(t.attributes)),n=a.find(".ui-side-section-body");i.each(t.get("items"),function(t){if(void 0===t.enabled||t.enabled){var a=s("<a/>").attr({href:e.root+t.url}).text((0,r.default)(t.title));"__use_router__"==t.target?a.on("click",function(a){a.preventDefault(),e.page.router.push(t.url)}):a.attr("target","galaxy_main"),n.append(s("<div/>").addClass("ui-side-section-body-title").append(a))}}),e.$el.append(a)}),this.page.$("#galaxy_main").prop("src",this.root+"admin/center?message="+this.message+"&status="+this.status)},_templateSection:function(e){return["<div>",'<div class="ui-side-section-title">'+(0,r.default)(e.title)+"</div>",'<div class="ui-side-section-body"/>',"</div>"].join("")},_template:function(){return'<div class="ui-side-panel"/>'},toString:function(){return"adminPanel"}});t.default=o}).call(t,a(2),a(0),a(1))},281:function(e,t,a){"use strict";function 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a("div",{staticClass:"toolForm",attrs:{id:"form-userkeys"}},[a("div",{staticClass:"toolFormTitle"},[e._v("User Information")]),e._v(" "),e.users&&e.users.length>0?a("div",[a("table",{staticClass:"grid"},[e._m(0,!1,!1),e._v(" "),a("tbody",e._l(e.users,function(t){return a("tr",[a("td",[e._v("\n                        "+e._s(t.uid)+"\n                    ")]),e._v(" "),a("td",[e._v("\n                        "+e._s(t.email)+"\n                    ")]),e._v(" "),a("td",[e._v("\n                        "+e._s(t.key)+"\n                    ")]),e._v(" "),a("td",[a("input",{attrs:{type:"button",value:"Generate a new key now"},on:{click:function(a){e.generateKey(t.uid)}}})])])}))])]):a("div",[a("div",[e._v("No user information available")])]),e._v(" "),a("div",{staticStyle:{clear:"both"}})])},i=[function(){var e=this,t=e.$createElement,a=e._self._c||t;return a("thead",[a("th",[e._v("Encoded UID")]),a("th",[e._v("Email")]),a("th",[e._v("API 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diff --git a/static/scripts/bundled/analysis.bundled.js b/static/scripts/bundled/analysis.bundled.js
index dd534933551..e4a6a300e41 100644
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e.extend(b.prototype._buildFetchData.call(this,t),{v:"dev"})},_fetchParams:b.prototype._fetchParams.concat(["v","details"]),_buildFetchFilters:function(t){var i=b.prototype._buildFetchFilters.call(this,t)||{},n={};return this.includeDeleted||(n.deleted=!1,n.purged=!1),this.includeHidden||(n.visible=!0),e.defaults(i,n)},getTotalItemCount:function(){return this.history.contentsShown()},fetchUpdated:function(e,t){return e&&(t=t||{filters:{}},t.remove=!1,t.filters={"update_time-ge":e.toISOString(),visible:""}),this.fetch(t)},fetchDeleted:function(t){var i=this;return t=t||{},t.filters=e.extend(t.filters,{deleted:!0,purged:void 0}),t.remove=!1,this.trigger("fetching-deleted",this),this.fetch(t).always(function(){i.trigger("fetching-deleted-done",i)})},fetchHidden:function(t){t=t||{};var i=this;return t.filters=e.extend(t.filters,{visible:!1}),t.remove=!1,i.trigger("fetching-hidden",i),i.fetch(t).always(function(){i.trigger("fetching-hidden-done",i)})},fetchAllDetails:function(t){t=t||{};var i={details:"all"};return t.data=e.extend(t.data||{},i),this.fetch(t)},_filterAndUpdate:function(e,t){var i=this,n=i.model.prototype.idAttribute,s=[t];return i.fetch({filters:e,remove:!1}).then(function(e){return e=e.reduce(function(e,t,s){var a=i.get(t[n]);return a?e.concat(a):e},[]),i.ajaxQueue("save",s,e)})},ajaxQueue:function(t,i,n){return n=n||this.models,new w.default.AjaxQueue(n.slice().reverse().map(function(n,s){var a=e.isString(t)?n[t]:t;return function(){return a.apply(n,i)}})).deferred},progressivelyFetchDetails:function(t){function i(n){n=n||0;var l=e.extend(e.clone(t),{view:"summary",keys:r,limit:o,offset:n,reset:0===n,remove:!1});e.defer(function(){a.fetch.call(a,l).fail(s.reject).done(function(e){s.notify(e,o,n),e.length!==o?(a.allFetched=!0,s.resolve(e,o,n)):i(n+o)})})}t=t||{};var s=n.Deferred(),a=this,o=t.limitPerCall||a.limitPerProgressiveFetch,l=d.default.HistoryDatasetAssociation.prototype.searchAttributes,r=l.join(",");return i(),s},isCopyable:function(t){var i=["HistoryDatasetAssociation","HistoryDatasetCollectionAssociation"];return e.isObject(t)&&t.id&&e.contains(i,t.model_class)},copy:function(t){var i,s,a;e.isString(t)?(i=t,a="hda",s="dataset"):(i=t.id,a={HistoryDatasetAssociation:"hda",LibraryDatasetDatasetAssociation:"ldda",HistoryDatasetCollectionAssociation:"hdca"}[t.model_class]||"hda",s="hdca"===a?"dataset_collection":"dataset");var o=this,l=n.ajax(this.url(),{method:"POST",contentType:"application/json",data:JSON.stringify({content:i,source:a,type:s})}).done(function(e){o.add([e],{parse:!0})}).fail(function(e,t,n){o.trigger("error",o,l,{},"Error copying contents",{type:s,id:i,source:a})});return l},createHDCA:function(e,t,i,n,s){return this.model({history_content_type:"dataset_collection",collection_type:t,history_id:this.historyId,name:i,hide_source_items:n||!1,element_identifiers:e}).save(s)},haveSearchDetails:function(){return this.allFetched&&this.all(function(t){return e.has(t.attributes,"annotation")})},matches:function(e){return this.filter(function(t){return t.matches(e)})},clone:function(){var e=s.Collection.prototype.clone.call(this);return e.historyId=this.historyId,e},toString:function(){return["HistoryContents(",[this.historyId,this.length].join(),")"].join("")}});t.default={HistoryContents:x}}).call(t,i(1),i(0),i(2))},function(e,t,i){"use strict";(function(e,n,s,a){function o(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var l=i(20),r=o(l),d=i(8),c=o(d),u=i(10),h=o(u),f=i(4),p=o(f),m=i(3),g=o(m),_=r.default.ListItemView,v=_.extend({_logNamespace:"dataset",className:_.prototype.className+" dataset",id:function(){return["dataset",this.model.get("id")].join("-")},initialize:function(e){e.logger&&(this.logger=this.model.logger=e.logger),this.log(this+".initialize:",e),_.prototype.initialize.call(this,e),this.linkTarget=e.linkTarget||"_blank"},_setUpListeners:function(){_.prototype._setUpListeners.call(this);var t=this;return t.listenTo(t.model,{change:function(i){t.model.changedAttributes().state&&t.model.inReadyState()&&t.expanded&&!t.model.hasDetails()?t.model.fetch({silent:!0}).done(function(){t.render()}):e.has(i.changed,"tags")&&1===e.keys(i.changed).length?t.$(".nametags").html(t._renderNametags()):t.render()}})},_fetchModelDetails:function(){var e=this;return e.model.inReadyState()&&!e.model.hasDetails()?e.model.fetch({silent:!0}):n.when()},remove:function(e,t){var i=this;e=e||this.fxSpeed,this.$el.fadeOut(e,function(){s.View.prototype.remove.call(i),t&&t.call(i)})},_swapNewRender:function(e){return _.prototype._swapNewRender.call(this,e),this.model.has("state")&&this.$el.addClass("state-"+this.model.get("state")),this.$el},_renderPrimaryActions:function(){return[this._renderDisplayButton()]},_renderDisplayButton:function(){var e=this.model.get("state");if(e===c.default.NOT_VIEWABLE||e===c.default.DISCARDED||!this.model.get("accessible"))return null;var t={target:this.linkTarget,classes:"display-btn"};if(this.model.get("purged"))t.disabled=!0,t.title=(0,g.default)("Cannot display datasets removed from disk");else if(e===c.default.UPLOAD)t.disabled=!0,t.title=(0,g.default)("This dataset must finish uploading before it can be viewed");else if(e===c.default.NEW)t.disabled=!0,t.title=(0,g.default)("This dataset is not yet viewable");else{t.title=(0,g.default)("View data"),t.href=this.model.urls.display;var i=this;t.onclick=function(e){Galaxy.frame&&Galaxy.frame.active&&(Galaxy.frame.addDataset(i.model.get("id")),e.preventDefault())}}return t.faIcon="fa-eye",(0,h.default)(t)},_renderDetails:function(){if(this.model.get("state")===c.default.NOT_VIEWABLE)return a(this.templates.noAccess(this.model.toJSON(),this));var e=_.prototype._renderDetails.call(this);return e.find(".actions .left").empty().append(this._renderSecondaryActions()),e.find(".summary").html(this._renderSummary()).prepend(this._renderDetailMessages()),e.find(".display-applications").html(this._renderDisplayApplications()),this._setUpBehaviors(e),e},_renderSummary:function(){var e=this.model.toJSON(),t=this.templates.summaries[e.state];return(t=t||this.templates.summaries.unknown)(e,this)},_renderDetailMessages:function(){var t=this,i=a('<div class="detail-messages"></div>'),n=t.model.toJSON();return e.each(t.templates.detailMessages,function(e){i.append(a(e(n,t)))}),i},_renderDisplayApplications:function(){return this.model.isDeletedOrPurged()?"":[this.templates.displayApplications(this.model.get("display_apps"),this),this.templates.displayApplications(this.model.get("display_types"),this)].join("")},_renderSecondaryActions:function(){switch(this.debug("_renderSecondaryActions"),this.model.get("state")){case c.default.NOT_VIEWABLE:return[];case c.default.OK:case c.default.FAILED_METADATA:case c.default.ERROR:return[this._renderDownloadButton(),this._renderShowParamsButton()]}return[this._renderShowParamsButton()]},_renderShowParamsButton:function(){return(0,h.default)({title:(0,g.default)("View details"),classes:"params-btn",href:this.model.urls.show_params,target:this.linkTarget,faIcon:"fa-info-circle",onclick:function(e){Galaxy.frame&&Galaxy.frame.active&&(Galaxy.frame.add({title:(0,g.default)("Dataset details"),url:this.href}),e.preventDefault(),e.stopPropagation())}})},_renderDownloadButton:function(){return this.model.get("purged")||!this.model.hasData()?null:e.isEmpty(this.model.get("meta_files"))?a('\n                <a class="download-btn icon-btn" href="'+this.model.urls.download+'" title="'+(0,g.default)("Download")+'">\n                    <span class="fa fa-floppy-o"></span>\n                </a>'):this._renderMetaFileDownloadButton()},_renderMetaFileDownloadButton:function(){var t=this.model.urls;return a('\n                <div class="metafile-dropdown dropdown">\n                    <a class="download-btn icon-btn" href="'+t.download+'" data-toggle="dropdown" title="'+(0,g.default)("Download")+'">\n                        <span class="fa fa-floppy-o"></span>\n                    </a>\n                    <ul class="dropdown-menu" role="menu" aria-labelledby="dLabel">\n                        <li>\n                            <a href="'+t.download+'">\n                                '+(0,g.default)("Download dataset")+"\n                            </a>\n                        </li>\n                        "+e.map(this.model.get("meta_files"),function(e){return'<li>\n                                    <a href="'+(t.meta_download+e.file_type)+'">\n                                        '+(0,g.default)("Download")+" "+e.file_type+"\n                                    </a>\n                                </li>"})+"\n                    </ul>\n                </div>")},_renderNametags:function(){return e.template(["<% _.each(_.sortBy(_.uniq(tags), function(x) { return x }), function(tag){ %>",'<% if (tag.indexOf("name:") == 0){ %>','<span class="label label-info"><%- tag.slice(5) %></span>',"<% } %>","<% }); %>"].join(""))({tags:this.model.get("tags")})},events:e.extend(e.clone(_.prototype.events),{"click .display-btn":function(e){this.trigger("display",this,e)},"click .params-btn":function(e){this.trigger("params",this,e)},"click .download-btn":function(e){this.trigger("download",this,e)}}),toString:function(){return"DatasetListItemView("+(this.model?""+this.model:"(no model)")+")"}});v.prototype.templates=function(){var t=e.extend({},_.prototype.templates.warnings,{failed_metadata:p.default.wrapTemplate(['<% if( model.state === "failed_metadata" ){ %>','<div class="warningmessagesmall">',(0,g.default)("An error occurred setting the metadata for this dataset"),"</div>","<% } %>"]),error:p.default.wrapTemplate(["<% if( model.error ){ %>",'<div class="errormessagesmall">',(0,g.default)("There was an error getting the data for this dataset"),": <%- model.error %>","</div>","<% } %>"]),purged:p.default.wrapTemplate(["<% if( model.purged ){ %>",'<div class="purged-msg warningmessagesmall">',(0,g.default)("This dataset has been deleted and removed from disk"),"</div>","<% } %>"]),deleted:p.default.wrapTemplate(["<% if( model.deleted && !model.purged ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,g.default)("This dataset has been deleted"),"</div>","<% } %>"])}),i=p.default.wrapTemplate(['<div class="details">','<div class="summary"></div>','<div class="actions clear">','<div class="left"></div>','<div class="right"></div>',"</div>","<% if( !dataset.deleted && !dataset.purged ){ %>",'<div class="tags-display"></div>','<div class="annotation-display"></div>','<div class="display-applications"></div>',"<% if( dataset.peek ){ %>",'<pre class="dataset-peek"><%= dataset.peek %></pre>',"<% } %>","<% } %>","</div>"],"dataset"),n=p.default.wrapTemplate(['<div class="details">','<div class="summary">',(0,g.default)("You do not have permission to view this dataset"),"</div>","</div>"],"dataset"),s={};s[c.default.OK]=s[c.default.FAILED_METADATA]=p.default.wrapTemplate(["<% if( dataset.misc_blurb ){ %>",'<div class="blurb">','<span class="value"><%- dataset.misc_blurb %></span>',"</div>","<% } %>","<% if( dataset.file_ext ){ %>",'<div class="datatype">','<label class="prompt">',(0,g.default)("format"),"</label>",'<span class="value"><%- dataset.file_ext %></span>',"</div>","<% } %>","<% if( dataset.metadata_dbkey ){ %>",'<div class="dbkey">','<label class="prompt">',(0,g.default)("database"),"</label>",'<span class="value">',"<%- dataset.metadata_dbkey %>","</span>","</div>","<% } %>","<% if( dataset.misc_info ){ %>",'<div class="info">','<span class="value"><%- dataset.misc_info %></span>',"</div>","<% } %>"],"dataset"),s[c.default.NEW]=p.default.wrapTemplate(["<div>",(0,g.default)("This is a new dataset and not all of its data are available yet"),"</div>"],"dataset"),s[c.default.NOT_VIEWABLE]=p.default.wrapTemplate(["<div>",(0,g.default)("You do not have permission to view this dataset"),"</div>"],"dataset"),s[c.default.DISCARDED]=p.default.wrapTemplate(["<div>",(0,g.default)("The job creating this dataset was cancelled before completion"),"</div>"],"dataset"),s[c.default.QUEUED]=p.default.wrapTemplate(["<div>",(0,g.default)("This job is waiting to run"),"</div>"],"dataset"),s[c.default.RUNNING]=p.default.wrapTemplate(["<div>",(0,g.default)("This job is currently running"),"</div>"],"dataset"),s[c.default.UPLOAD]=p.default.wrapTemplate(["<div>",(0,g.default)("This dataset is currently uploading"),"</div>"],"dataset"),s[c.default.SETTING_METADATA]=p.default.wrapTemplate(["<div>",(0,g.default)("Metadata is being auto-detected"),"</div>"],"dataset"),s[c.default.PAUSED]=p.default.wrapTemplate(["<div>",(0,g.default)('This job is paused. Use the "Resume Paused Jobs" in the history menu to resume'),"</div>"],"dataset"),s[c.default.ERROR]=p.default.wrapTemplate(["<% if( !dataset.purged ){ %>","<div><%- dataset.misc_blurb %></div>","<% } %>",'<span class="help-text">',(0,g.default)("An error occurred with this dataset"),":</span>",'<div class="job-error-text"><%- dataset.misc_info %></div>'],"dataset"),s[c.default.EMPTY]=p.default.wrapTemplate(["<div>",(0,g.default)("No data"),": <i><%- dataset.misc_blurb %></i></div>"],"dataset"),s.unknown=p.default.wrapTemplate(['<div>Error: unknown dataset state: "<%- dataset.state %>"</div>'],"dataset");var a={resubmitted:p.default.wrapTemplate(["<% if( model.resubmitted ){ %>",'<div class="resubmitted-msg infomessagesmall">',(0,g.default)("The job creating this dataset has been resubmitted"),"</div>","<% } %>"])},o=p.default.wrapTemplate(["<% _.each( apps, function( app ){ %>",'<div class="display-application">','<span class="display-application-location"><%- app.label %></span> ','<span class="display-application-links">',"<% _.each( app.links, function( link ){ %>",'<a target="<%- link.target %>" href="<%- link.href %>">',"<% print( _l( link.text ) ); %>","</a> ","<% }); %>","</span>","</div>","<% }); %>"],"apps");return e.extend({},_.prototype.templates,{warnings:t,details:i,noAccess:n,summaries:s,detailMessages:a,displayApplications:o})}(),t.default={DatasetListItemView:v}}).call(t,i(1),i(0),i(2),i(0))},,,function(e,t,i){"use strict";(function(e,n,s,a){function o(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var l=i(4),r=o(l),d=i(3),c=(o(d),e.View.extend(r.default.LoggableMixin).extend({_logNamespace:"list",initialize:function(e){this.expanded=e.expanded||!1,this.log("\t expanded:",this.expanded),this.fxSpeed=void 0!==e.fxSpeed?e.fxSpeed:this.fxSpeed},fxSpeed:"fast",render:function(e){var t=this._buildNewRender();return this._setUpBehaviors(t),this._queueNewRender(t,e),this},_buildNewRender:function(){var e=n(this.templates.el(this.model.toJSON(),this));return this.expanded&&this.$details(e).replaceWith(this._renderDetails().show()),e},_queueNewRender:function(e,t){t=void 0===t?this.fxSpeed:t;var i=this;0===t?(i._swapNewRender(e),i.trigger("rendered",i)):n(i).queue("fx",[function(e){i.$el.fadeOut(t,e)},function(t){i._swapNewRender(e),t()},function(e){i.$el.fadeIn(t,e)},function(e){i.trigger("rendered",i),e()}])},_swapNewRender:function(e){return this.$el.empty().attr("class",s.isFunction(this.className)?this.className():this.className).append(e.children())},_setUpBehaviors:function(e){e=e||this.$el,e.find("[title]").tooltip({placement:"bottom"})},$details:function(e){return e=e||this.$el,e.find("> .details")},_renderDetails:function(){var e=n(this.templates.details(this.model.toJSON(),this));return this._setUpBehaviors(e),e},toggleExpanded:function(e){return e=void 0===e?!this.expanded:e,e?this.expand():this.collapse(),this},expand:function(){var e=this;return e._fetchModelDetails().always(function(){e._expand()})},_fetchModelDetails:function(){return this.model.hasDetails()?a.when():this.model.fetch()},_expand:function(){var e=this,t=e._renderDetails();e.$details().replaceWith(t),e.expanded=!0,e.$details().slideDown(e.fxSpeed,function(){e.trigger("expanded",e)})},collapse:function(){this.debug(this+"(ExpandableView).collapse");var e=this;e.expanded=!1,this.$details().slideUp(e.fxSpeed,function(){e.trigger("collapsed",e)})}})),u=c.extend(r.default.mixin(r.default.SelectableViewMixin,r.default.DraggableViewMixin,{tagName:"div",className:"list-item",initialize:function(e){c.prototype.initialize.call(this,e),r.default.SelectableViewMixin.initialize.call(this,e),r.default.DraggableViewMixin.initialize.call(this,e),this._setUpListeners()},_setUpListeners:function(){return this.on("selectable",function(e){e?this.$(".primary-actions").hide():this.$(".primary-actions").show()},this),this},_buildNewRender:function(){var e=c.prototype._buildNewRender.call(this);return e.children(".warnings").replaceWith(this._renderWarnings()),e.children(".title-bar").replaceWith(this._renderTitleBar()),e.children(".primary-actions").append(this._renderPrimaryActions()),e.find("> .title-bar .subtitle").replaceWith(this._renderSubtitle()),e},_swapNewRender:function(e){return c.prototype._swapNewRender.call(this,e),this.selectable&&this.showSelector(0),this.draggable&&this.draggableOn(),this.$el},_renderWarnings:function(){var e=this,t=n('<div class="warnings"></div>'),i=e.model.toJSON();return s.each(e.templates.warnings,function(s){t.append(n(s(i,e)))}),t},_renderTitleBar:function(){return n(this.templates.titleBar(this.model.toJSON(),this))},_renderPrimaryActions:function(){return[]},_renderSubtitle:function(){return n(this.templates.subtitle(this.model.toJSON(),this))},events:{"click .title-bar":"_clickTitleBar","keydown .title-bar":"_keyDownTitleBar","click .selector":"toggleSelect"},_clickTitleBar:function(e){e.stopPropagation(),e.altKey?(this.toggleSelect(e),this.selectable||this.showSelector()):this.toggleExpanded()},_keyDownTitleBar:function(e){return!e||"keydown"!==e.type||32!==e.keyCode&&13!==e.keyCode||(this.toggleExpanded(),e.stopPropagation(),!1)},toString:function(){return"ListItemView("+(this.model?""+this.model:"(no model)")+")"}}));u.prototype.templates=function(){return{el:r.default.wrapTemplate(['<div class="list-element">','<div class="warnings"></div>','<div class="selector">','<span class="fa fa-2x fa-square-o"></span>',"</div>",'<div class="primary-actions"></div>','<div class="title-bar"></div>','<div class="details"></div>',"</div>"]),warnings:{},titleBar:r.default.wrapTemplate(['<div class="title-bar clear" tabindex="0">','<span class="state-icon"></span>','<div class="title">','<span class="name"><%- element.name %></span>',"</div>",'<div class="subtitle"></div>',"</div>"],"element"),subtitle:r.default.wrapTemplate(['<div class="subtitle"></div>']),details:r.default.wrapTemplate(['<div class="details"></div>'])}}();var h=u.extend({foldoutStyle:"foldout",foldoutPanelClass:null,initialize:function(e){"drilldown"===this.foldoutStyle&&(this.expanded=!1),this.foldoutStyle=e.foldoutStyle||this.foldoutStyle,this.foldoutPanelClass=e.foldoutPanelClass||this.foldoutPanelClass,u.prototype.initialize.call(this,e),this.foldout=this._createFoldoutPanel()},_renderDetails:function(){if("drilldown"===this.foldoutStyle)return n();var e=u.prototype._renderDetails.call(this);return this._attachFoldout(this.foldout,e)},_createFoldoutPanel:function(){var e=this.model,t=this._getFoldoutPanelClass(e),i=this._getFoldoutPanelOptions(e);return new t(s.extend(i,{model:e}))},_getFoldoutPanelClass:function(){return this.foldoutPanelClass},_getFoldoutPanelOptions:function(){return{foldoutStyle:this.foldoutStyle,fxSpeed:this.fxSpeed}},_attachFoldout:function(e,t){return t=t||this.$("> .details"),this.foldout=e.render(0),e.$("> .controls").hide(),t.append(e.$el)},expand:function(){var e=this;return e._fetchModelDetails().always(function(){"foldout"===e.foldoutStyle?e._expand():"drilldown"===e.foldoutStyle&&e._expandByDrilldown()})},_expandByDrilldown:function(){var e=this;e.listenTo(e.foldout,"close",function(){e.trigger("collapsed:drilldown",e,e.foldout)}),e.trigger("expanded:drilldown",e,e.foldout)}});h.prototype.templates=function(){var e=r.default.wrapTemplate(['<div class="details">',"</div>"],"collection");return s.extend({},u.prototype.templates,{details:e})}(),t.default={ExpandableView:c,ListItemView:u,FoldoutListItemView:h}}).call(t,i(2),i(0),i(1),i(0))},function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=i(4),o=s(a),l=i(3),r=s(l),d=e.View.extend(o.default.LoggableMixin).extend(o.default.HiddenUntilActivatedViewMixin).extend({tagName:"div",className:"tags-display",select_width:"100%",events:{},initialize:function(e){this.show_editor=!1,!1===e.usePrompt?this.label="":this.label='<label class="prompt">'+(0,r.default)("Tags")+"</label>",this.workflow_mode=e.workflow_mode||!1,this.workflow_mode&&(this.events.click="showEditor",this.events.keydown="keydownHandler"),this.hiddenUntilActivated(e.$activator,e)},render:function(){var e=this;return this.workflow_mode?this.$el.html(this._workflowTemplate()):this.$el.html(this._defaultTemplate()),this.$input().select2({placeholder:"Add tags",width:this.workflow_mode?this.width:this.select_width,tags:function(){return e._getTagsUsed()}}),this._setUpBehaviors(),this},_hashToName:function(e){return e.startsWith("#")?"name:"+e.slice(1):e},_nameToHash:function(e){return 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this.contents?this.listenTo(this.contents,{error:function(){this.trigger.apply(this,n.makeArray(arguments))}}):this},contentsShown:function(){var e=this.get("contents_active"),t=e.active||0;return t+=this.contents.includeDeleted?e.deleted:0,t+=this.contents.includeHidden?e.hidden:0},nice_size:function(){var e=this.get("size");return e?f.default.bytesToString(e,!0,2):(0,_.default)("(empty)")},toJSON:function(){return s.extend(e.Model.prototype.toJSON.call(this),{nice_size:this.nice_size()})},get:function(t){return"nice_size"===t?this.nice_size():e.Model.prototype.get.apply(this,arguments)},ownedByCurrUser:function(){return!(!Galaxy||!Galaxy.user)&&(!Galaxy.user.isAnonymous()&&Galaxy.user.id===this.get("user_id"))},numOfUnfinishedJobs:function(){var e=this.get("non_ready_jobs");return e?e.length:0},numOfUnfinishedShownContents:function(){return this.contents.runningAndActive().length||0},_fetchContentRelatedAttributes:function(){var e=["size","non_ready_jobs","contents_active","hid_counter"];return this.fetch({data:a.param({keys:e.join(",")})})},refresh:function(e){var t=this;e=e||{};var i=this.lastUpdateTime;return this.contents.allFetched=!1,(0!==this.contents.currentPage?function(){return t.contents.fetchPage(t.contents.currentPage)}:function(){return t.contents.fetchUpdated(i)})().done(function(i,n,s){var a;try{a=new Date(s.getResponseHeader("Date"))}catch(e){}t.lastUpdateTime=a||new Date,t.checkForUpdates(e)})},checkForUpdates:function(e){var t=this;e=e||{};var i=this.UPDATE_DELAY;if(this.id){var n=function(){t.clearUpdateTimeout(),t.updateTimeoutId=setTimeout(function(){t.refresh(e)},i)};this.numOfUnfinishedShownContents()>0?n():this._fetchContentRelatedAttributes().done(function(e){t.numOfUnfinishedJobs()>0?n():t.trigger("ready")})}},clearUpdateTimeout:function(){this.updateTimeoutId&&(clearTimeout(this.updateTimeoutId),this.updateTimeoutId=null)},stopPolling:function(){this.clearUpdateTimeout(),this.contents&&this.contents.stopPolling()},parse:function(t,i){var n=e.Model.prototype.parse.call(this,t,i);return n.create_time&&(n.create_time=new Date(n.create_time)),n.update_time&&(n.update_time=new Date(n.update_time)),n},fetchWithContents:function(e,t){e=e||{};var i=this;return e.view="dev-detailed",this.fetch(e).then(function(e){return i.contents.history=i,i.contents.setHistoryId(e.id),i.fetchContents(t)})},fetchContents:function(e){e=e||{};var t=this;return t.lastUpdateTime=new Date,t.contents.fetchCurrentPage(e)},_delete:function(e){return this.get("deleted")?n.when():this.save({deleted:!0},e)},purge:function(e){return this.get("purged")?n.when():this.save({deleted:!0,purged:!0},e)},undelete:function(e){return this.get("deleted")?this.save({deleted:!1},e):n.when()},copy:function(e,t,i){if(e=void 0===e||e,!this.id)throw new Error("You must set the history ID before copying it.");var s={history_id:this.id};e&&(s.current=!0),t&&(s.name=t),i||(s.all_datasets=!1),s.view="dev-detailed";var a=this,o=n.post(this.urlRoot,s);return e?o.then(function(e){return new v(e).setAsCurrent().done(function(){a.trigger("copied",a,e)})}):o.done(function(e){a.trigger("copied",a,e)})},setAsCurrent:function(){var e=this,t=n.getJSON(Galaxy.root+"history/set_as_current?id="+this.id);return t.done(function(){e.trigger("set-as-current",e)}),t},toString:function(){return"History("+this.get("id")+","+this.get("name")+")"}})),w=u.default.InfinitelyScrollingCollection,y=w.extend(m.default.LoggableMixin).extend({_logNamespace:"history",model:v,order:"update_time",limitOnFirstFetch:10,limitPerFetch:10,initialize:function(e,t){t=t||{},this.log("HistoryCollection.initialize",e,t),w.prototype.initialize.call(this,e,t),this.includeDeleted=t.includeDeleted||!1,this.currentHistoryId=t.currentHistoryId,this.setUpListeners()},urlRoot:Galaxy.root+"api/histories",url:function(){return this.urlRoot},setUpListeners:function(){return this.on({"change:deleted":function(e){this.debug("change:deleted",this.includeDeleted,e.get("deleted")),!this.includeDeleted&&e.get("deleted")&&this.remove(e)},copied:function(e,t){this.setCurrent(new v(t,[]))},"set-as-current":function(e){var t=this.currentHistoryId;this.trigger("no-longer-current",t),this.currentHistoryId=e.id}})},_buildFetchData:function(e){return s.extend(w.prototype._buildFetchData.call(this,e),{view:"dev-detailed"})},_buildFetchFilters:function(e){var t=w.prototype._buildFetchFilters.call(this,e)||{},i={};return this.includeDeleted?i.deleted=null:(i.deleted=!1,i.purged=!1),s.defaults(t,i)},fetchFirst:function(e){var t=this,i=a.when();return this.currentHistoryId&&(i=w.prototype.fetchFirst.call(t,{silent:!0,limit:1,filters:{purged:"",deleted:"","encoded_id-in":this.currentHistoryId}})),i.then(function(){return e=e||{},e.offset=0,t.fetchMore(e)})},comparators:s.extend(s.clone(w.prototype.comparators),{name:m.default.buildComparator("name",{ascending:!0}),"name-dsc":m.default.buildComparator("name",{ascending:!1}),size:m.default.buildComparator("size",{ascending:!1}),"size-asc":m.default.buildComparator("size",{ascending:!0})}),sort:function(e){e=e||{};var t=e.silent,i=this.remove(this.get(this.currentHistoryId));return w.prototype.sort.call(this,s.defaults({silent:!0},e)),this.unshift(i,{silent:!0}),t||this.trigger("sort",this,e),this},create:function(e,t,i,s){var a=this;return n.getJSON(Galaxy.root+"history/create_new_current").done(function(e){a.setCurrent(new v(e,[],i||{}))})},setCurrent:function(e,t){return t=t||{},this.unshift(e,t),this.currentHistoryId=e.get("id"),t.silent||this.trigger("new-current",e,this),this},toString:function(){return"HistoryCollection("+this.length+",current:"+this.currentHistoryId+")"}});t.default={History:v,HistoryCollection:y}}).call(t,i(2),i(0),i(1),i(0))},function(e,t,i){"use strict";(function(e){Object.defineProperty(t,"__esModule",{value:!0});var n=i(4),s=function(e){return e&&e.__esModule?e:{default:e}}(n),a=s.default.SessionStorageModel.extend({defaults:{expandedIds:{},show_deleted:!1,show_hidden:!1},addExpanded:function(e){var 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this.running=!1,this.queue=[],t?this.deferred.reject(i):this.deferred.resolve(this.responses),this.numToProcess=0,this.deferred=e.Deferred(),this}},{key:"done",value:function(e){return this.deferred.done(e)}},{key:"fail",value:function(e){return this.deferred.fail(e)}},{key:"always",value:function(e){return this.deferred.always(e)}},{key:"progress",value:function(e){return this.deferred.progress(e)}}],[{key:"create",value:function(e){return new t(e).deferred}}]),t}(),r=function(e){function t(e){s(this,t);var n=i(this,(t.__proto__||Object.getPrototypeOf(t)).call(this,e));return n.names={},n}return n(t,e),o(t,[{key:"add",value:function(e){if(!e.hasOwnProperty("name")||!e.hasOwnProperty("fn"))throw new Error('NamedAjaxQueue.add requires an object with both "name" and "fn": '+JSON.stringify(e));if(!this.names.hasOwnProperty(e.name))return this.names[e.name]=!0,a(t.prototype.__proto__||Object.getPrototypeOf(t.prototype),"add",this).call(this,e.fn)}},{key:"clear",value:function(){return this.names={},this}}],[{key:"create",value:function(e){return new t(e).deferred}}]),t}(l);t.default={AjaxQueue:l,NamedAjaxQueue:r}}).call(t,i(0))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(20),l=a(o),r=i(17),d=a(r),c=i(4),u=a(c),h=i(3),f=a(h),p=l.default.FoldoutListItemView,m=l.default.ListItemView,g=p.extend({className:p.prototype.className+" dataset-collection",id:function(){return["dataset_collection",this.model.get("id")].join("-")},initialize:function(e){this.linkTarget=e.linkTarget||"_blank",this.hasUser=e.hasUser,p.prototype.initialize.call(this,e)},_setUpListeners:function(){p.prototype._setUpListeners.call(this),this.listenTo(this.model,"change",function(t,i){e.has(t.changed,"deleted")?this.render():e.has(t.changed,"element_count")&&this.$("> .title-bar .subtitle").replaceWith(this._renderSubtitle())})},_renderSubtitle:function(){return n(this.templates.subtitle(this.model.toJSON(),this))},_getFoldoutPanelOptions:function(){var t=p.prototype._getFoldoutPanelOptions.call(this);return e.extend(t,{linkTarget:this.linkTarget,hasUser:this.hasUser})},$selector:function(){return this.$("> .selector")},toString:function(){return"DCListItemView("+(this.model?""+this.model:"(no model)")+")"}});g.prototype.templates=function(){var t=e.extend({},p.prototype.templates.warnings,{error:u.default.wrapTemplate(["<% if( model.error ){ %>",'<div class="errormessagesmall">',(0,f.default)("There was an error getting the data for this collection"),": <%- model.error %>","</div>","<% } %>"]),purged:u.default.wrapTemplate(["<% if( model.purged ){ %>",'<div class="purged-msg warningmessagesmall">',(0,f.default)("This collection has been deleted and removed from disk"),"</div>","<% } %>"]),deleted:u.default.wrapTemplate(["<% if( model.deleted && !model.purged ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,f.default)("This collection 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( collection.element_count + " " ) : ""; %>','<%        if( collection.collection_type === "list" ){ %>',(0,f.default)("a list of <%- countText %>datasets"),'<% } else if( collection.collection_type === "paired" ){ %>',(0,f.default)("a pair of datasets"),'<% } else if( collection.collection_type === "list:paired" ){ %>',(0,f.default)("a list of <%- countText %>dataset pairs"),'<% } else if( collection.collection_type === "list:list" ){ %>',(0,f.default)("a list of <%- countText %>dataset lists"),"<% } %>","</div>"],"collection");return e.extend({},p.prototype.templates,{warnings:t,titleBar:i,subtitle:n})}();var _=m.extend({className:m.prototype.className+" dataset-collection-element",initialize:function(e){e.logger&&(this.logger=this.model.logger=e.logger),this.log("DCEListItemView.initialize:",e),m.prototype.initialize.call(this,e)},toString:function(){return"DCEListItemView("+(this.model?""+this.model:"(no model)")+")"}});_.prototype.templates=function(){var t=u.default.wrapTemplate(['<div class="title-bar clear" tabindex="0">','<div class="title">','<span class="name"><%- element.element_identifier %></span>',"</div>",'<div class="subtitle"></div>',"</div>"],"element");return e.extend({},m.prototype.templates,{titleBar:t})}();var v=d.default.DatasetListItemView.extend({className:d.default.DatasetListItemView.prototype.className+" dataset-collection-element",initialize:function(e){e.logger&&(this.logger=this.model.logger=e.logger),this.log("DatasetDCEListItemView.initialize:",e),d.default.DatasetListItemView.prototype.initialize.call(this,e)},_fetchModelDetails:function(){var e=this;return e.model.inReadyState()&&!e.model.hasDetails()?e.model.fetch({silent:!0}):s.when()},toString:function(){return"DatasetDCEListItemView("+(this.model?""+this.model:"(no model)")+")"}});v.prototype.templates=function(){var t=u.default.wrapTemplate(['<div class="title-bar clear" tabindex="0">','<span class="state-icon"></span>','<div class="title">','<span class="name"><%- element.element_identifier %></span>',"</div>","</div>"],"element");return e.extend({},d.default.DatasetListItemView.prototype.templates,{titleBar:t})}();var w=g.extend({className:g.prototype.className+" dataset-collection-element",_swapNewRender:function(e){g.prototype._swapNewRender.call(this,e);var t=this.model.get("state")||"ok";return this.$el.addClass("state-"+t),this.$el},toString:function(){return"NestedDCDCEListItemView("+(this.model?""+this.model:"(no model)")+")"}});t.default={DCListItemView:g,DCEListItemView:_,DatasetDCEListItemView:v,NestedDCDCEListItemView:w}}).call(t,i(1),i(0),i(0))},,,function(e,t,i){"use strict";(function(e,n,s,a){function o(e){return e&&e.__esModule?e:{default:e}}function l(e,t){var i=e.toJSON();return C(i,{defaultHideSourceItems:t,creationFn:function(t,i,n){return t=t.map(function(e){return{id:e.id,name:e.name,src:"dataset"===e.history_content_type?"hda":"hdca"}}),e.createHDCA(t,"list",i,n)}})}Object.defineProperty(t,"__esModule",{value:!0});var r=i(27),d=o(r),c=i(8),u=o(c),h=i(4),f=o(h),p=i(52),m=o(p),g=i(9),_=o(g),v=i(53),w=(o(v),i(3)),y=o(w);i(54);var b=e.View.extend(f.default.LoggableMixin).extend({_logNamespace:"collections",tagName:"li",className:"collection-element",initialize:function(e){this.element=e.element||{},this.selected=e.selected||!1},render:function(){this.dragStartHandler=n.bind(this._dragstart,this),this.dragEndHandler=n.bind(this._dragend,this);var e=this.$el.attr("data-element-id",this.element.id).attr("draggable",!0).html(this.template({element:this.element})).get(0);return e.addEventListener("dragstart",this.dragStartHandler,!1),e.addEventListener("dragend",this.dragEndHandler,!1),this.selected&&this.$el.addClass("selected"),this},template:n.template(['<a class="name" title="',(0,y.default)("Click to rename"),'" 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element")+":",this.element.name));t&&(this.element.name=t,this.render())},_clickDiscard:function(e){e.stopPropagation(),this.discard()},_dragstart:function(e){e.originalEvent&&(e=e.originalEvent),e.dataTransfer.effectAllowed="move",e.dataTransfer.setData("text/plain",JSON.stringify(this.element)),this.$el.addClass("dragging"),this.$el.parent().trigger("collection-element.dragstart",[this])},_dragend:function(e){this.$el.removeClass("dragging"),this.$el.parent().trigger("collection-element.dragend",[this])},_sendToParent:function(e){this.$el.parent().trigger(e)},toString:function(){return"DatasetCollectionElementView()"}}),x=e.View.extend(f.default.LoggableMixin).extend(m.default.CollectionCreatorMixin).extend({_logNamespace:"collections",elementViewClass:b,collectionClass:d.default.HistoryDatasetCollection,className:"list-collection-creator collection-creator flex-row-container",minElements:1,defaultAttributes:{creationFn:function(){throw new TypeError("no creation fn for 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e.invalidElements=[],this.workingElements=this.workingElements.filter(function(t){var i=e._isElementInvalid(t);return i&&e.invalidElements.push({element:t,text:i}),!i}),this.workingElements},_isElementInvalid:function(e){return"dataset"!==e.history_content_type?(0,y.default)("is not a dataset"):e.state===u.default.OK||n.contains(u.default.NOT_READY_STATES,e.state)?e.deleted||e.purged?(0,y.default)("has been deleted or purged"):null:(0,y.default)("has errored, is paused, or is not accessible")},_mangleDuplicateNames:function(){var e=1,t={};this.workingElements.forEach(function(i){for(var n=i.name;t.hasOwnProperty(n);)if(n=i.name+" ("+e+")",(e+=1)>=900)throw new Error("Safety hit in while loop - thats impressive");i.name=n,t[i.name]=!0})},_sortElements:function(e){},render:function(e,t){return this.workingElements.length<this.minElements?this._renderInvalid(e,t):(this.$el.empty().html(this.templates.main()),this._renderHeader(e),this._renderMiddle(e),this._renderFooter(e),this._addPluginComponents(),this.$(".collection-name").focus(),this.trigger("rendered",this),this)},_renderInvalid:function(e,t){return this.$el.empty().html(this.templates.invalidInitial({problems:this.invalidElements,elements:this.workingElements})),"function"==typeof this.oncancel&&this.$(".cancel-create.btn").show(),this.trigger("rendered",this),this},_renderHeader:function(e,t){var i=this.$(".header").empty().html(this.templates.header()).find(".help-content").prepend(s(this.templates.helpContent()));return this.invalidElements.length&&this._invalidElementsAlert(),i},_renderMiddle:function(e,t){var i=this.$(".middle").empty().html(this.templates.middle());return this._renderList(e),i},_addPluginComponents:function(){this.$(".help-content 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0px"):o.css("border-width","0px")},_createElementView:function(e){var t=new this.elementViewClass({element:e,selected:n.has(this.selectedIds,e.id)});return this.elementViews.push(t),this._listenToElementView(t),t},_listenToElementView:function(e){var t=this;t.listenTo(e,{select:function(e){var i=e.source.element;e.selected?t.selectedIds[i.id]=!0:delete t.selectedIds[i.id],t.trigger("elements:select",e)},discard:function(e){t.trigger("elements:discard",e)}})},addElementView:function(e){},removeElementView:function(e){delete this.selectedIds[e.element.id],this._renderClearSelected(),this.elementViews=n.without(this.elementViews,e),this.stopListening(e)},_renderNoElementsLeft:function(){this._disableNameAndCreate(!0),this.$(".collection-elements").append(this.templates.noElementsLeft())},_elementToJSON:function(e){return e},createList:function(e){if(!this.workingElements.length){var t=(0,y.default)("No valid elements for final list")+". ";return t+='<a class="cancel-create" href="javascript:void(0);">'+(0,y.default)("Cancel")+"</a> ",t+=(0,y.default)("or"),t+=' <a class="reset" href="javascript:void(0);">'+(0,y.default)("start over")+"</a>.",void this._showAlert(t)}var i=this,n=this.workingElements.map(function(e){return i._elementToJSON(e)});return i.blocking=!0,i.creationFn(n,e,i.hideOriginals).always(function(){i.blocking=!1}).fail(function(e,t,n){i.trigger("error",{xhr:e,status:t,message:(0,y.default)("An error occurred while creating this collection")})}).done(function(e,t,n){i.trigger("collection:created",e,t,n),i.metric("collection:created",e),"function"==typeof i.oncreate&&i.oncreate.call(this,e,t,n)})},_setUpBehaviors:function(){return this.on("error",this._errorHandler),this.once("rendered",function(){this.trigger("rendered:initial",this)}),this.on("elements:select",function(e){this._renderClearSelected()}),this.on("elements:discard",function(e){var t=e.source.element;this.removeElementView(e.source),this.workingElements=n.without(this.workingElements,t),this.workingElements.length||this._renderNoElementsLeft()}),this},_errorHandler:function(e){this.error(e);var t=this,i=e.message||(0,y.default)("An error occurred");if(e.xhr){var n=e.xhr,s=e.message;0===n.readyState&&0===n.status?i+=": "+(0,y.default)("Galaxy could not be reached and may be updating.")+(0,y.default)(" Try again in a few minutes."):n.responseJSON?i+=":<br /><pre>"+JSON.stringify(n.responseJSON)+"</pre>":i+=": "+s}t._showAlert(i,"alert-danger")},events:{"click .more-help":"_clickMoreHelp","click .less-help":"_clickLessHelp","click .main-help":"_toggleHelp","click .header .alert button":"_hideAlert","click .reset":"reset","click .clear-selected":"clearSelectedElements","click .collection-elements":"clearSelectedElements","dragover .collection-elements":"_dragoverElements","drop .collection-elements":"_dropElements","collection-element.dragstart .collection-elements":"_elementDragstart","collection-element.dragend   .collection-elements":"_elementDragend","change .collection-name":"_changeName","keydown .collection-name":"_nameCheckForEnter","change .hide-originals":"_changeHideOriginals","click .cancel-create":"_cancelCreate","click .create-collection":"_clickCreate"},reset:function(){this._instanceSetUp(),this._elementsSetUp(),this.render()},clearSelectedElements:function(e){this.$(".collection-elements .collection-element").removeClass("selected"),this.$(".collection-elements-controls > .clear-selected").hide()},_dragoverElements:function(e){e.preventDefault();var t=this.$list();this._checkForAutoscroll(t,e.originalEvent.clientY);var i=this._getNearestElement(e.originalEvent.clientY);this.$(".element-drop-placeholder").remove();var n=s('<div class="element-drop-placeholder"></div>');i.length?i.before(n):t.append(n)},_checkForAutoscroll:function(e,t){var i=e.offset(),n=e.scrollTop(),s=t-i.top,a=i.top+e.outerHeight()-t;s>=0&&s<this.autoscrollDist?e.scrollTop(n-2):a>=0&&a<this.autoscrollDist&&e.scrollTop(n+2)},_getNearestElement:function(e){for(var t=this.$(".collection-elements li.collection-element").toArray(),i=0;i<t.length;i++){var n=s(t[i]),a=n.offset().top,o=Math.floor(n.outerHeight()/2)+4;if(a+o>e&&a-o<e)return n}return s()},_dropElements:function(e){e.originalEvent&&(e=e.originalEvent),e.preventDefault(),e.dataTransfer.dropEffect="move";var t=this._getNearestElement(e.clientY);return t.length?this.$dragging.insertBefore(t):this.$dragging.insertAfter(this.$(".collection-elements .collection-element").last()),this._syncOrderToDom(),!1},_syncOrderToDom:function(){var e=this,t=[];this.$(".collection-elements .collection-element").each(function(){var i=s(this).attr("data-element-id"),a=n.findWhere(e.workingElements,{id:i});a?t.push(a):console.error("missing element: ",i)}),this.workingElements=t,this._renderList()},_elementDragstart:function(e,t){t.select(!0),this.$dragging=this.$(".collection-elements .collection-element.selected")},_elementDragend:function(e,t){s(".element-drop-placeholder").remove(),this.$dragging=null},templates:n.extend({},m.default.CollectionCreatorMixin._creatorTemplates,{header:n.template(['<div class="main-help well clear">','<a class="more-help" href="javascript:void(0);">',(0,y.default)("More help"),"</a>",'<div class="help-content">','<a class="less-help" href="javascript:void(0);">',(0,y.default)("Less"),"</a>","</div>","</div>",'<div class="alert alert-dismissable">','<button type="button" class="close" data-dismiss="alert" ','title="',(0,y.default)("Close and show more help"),'" aria-hidden="true">&times;</button>','<span class="alert-message"></span>',"</div>"].join("")),middle:n.template(['<div class="collection-elements-controls">','<a class="reset" href="javascript:void(0);" ','title="',(0,y.default)("Undo all 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class="create-other btn-group dropup">','<button class="btn btn-default dropdown-toggle" data-toggle="dropdown">',(0,y.default)("Create a different kind of collection"),' <span class="caret"></span>',"</button>",'<ul class="dropdown-menu" role="menu">','<li><a href="#">',(0,y.default)("Create a <i>single</i> pair"),"</a></li>",'<li><a href="#">',(0,y.default)("Create a list of <i>unpaired</i> datasets"),"</a></li>","</ul>","</div>","</div>",'<div class="main-options pull-right">','<button class="create-collection btn btn-primary">',(0,y.default)("Create list"),"</button>","</div>","</div>"].join("")),helpContent:n.template(["<p>",(0,y.default)(["Collections of datasets are permanent, ordered lists of datasets that can be passed to tools and ","workflows in order to have analyses done on each member of the entire group. This interface allows ","you to create a collection and re-order the final collection."].join("")),"</p>","<ul>","<li>",(0,y.default)(["Rename elements in the list by clicking on ",'<i data-target=".collection-element .name">the existing name</i>.'].join("")),"</li>","<li>",(0,y.default)(["Discard elements from the final created list by clicking on the ",'<i data-target=".collection-element .discard">"Discard"</i> button.'].join("")),"</li>","<li>",(0,y.default)(["Reorder the list by clicking and dragging elements. Select multiple elements by clicking on ",'<i data-target=".collection-element">them</i> and you can then move those selected by dragging the ',"entire group. Deselect them by clicking them again or by clicking the ",'the <i data-target=".clear-selected">"Clear selected"</i> link.'].join("")),"</li>","<li>",(0,y.default)(['Click the <i data-target=".reset">"Start over"</i> link to begin again as if you had just opened ',"the interface."].join("")),"</li>","<li>",(0,y.default)(['Click the <i data-target=".cancel-create">"Cancel"</i> button to exit the interface.'].join("")),"</li>","</ul><br />","<p>",(0,y.default)(['Once your collection is complete, enter a <i data-target=".collection-name">name</i> and ','click <i data-target=".create-collection">"Create list"</i>.'].join("")),"</p>"].join("")),invalidElements:n.template([(0,y.default)("The following selections could not be included due to problems:"),"<ul><% _.each( problems, function( problem ){ %>","<li><b><%- problem.element.name %></b>: <%- problem.text %></li>","<% }); %></ul>"].join("")),noElementsLeft:n.template(['<li class="no-elements-left-message">',(0,y.default)("No elements left! "),(0,y.default)("Would you like to "),'<a class="reset" href="javascript:void(0)">',(0,y.default)("start over"),"</a>?","</li>"].join("")),invalidInitial:n.template(['<div class="header flex-row no-flex">','<div class="alert alert-warning" style="display: block">','<span class="alert-message">',"<% if( _.size( problems ) ){ %>",(0,y.default)("The following selections could not be included due to problems"),":","<ul><% _.each( problems, function( problem ){ %>","<li><b><%- problem.element.name %></b>: <%- problem.text %></li>","<% }); %></ul>","<% } else if( _.size( elements ) < 1 ){ %>",(0,y.default)("No datasets were selected"),".","<% } %>","<br />",(0,y.default)("At least one element is needed for the collection"),". ",(0,y.default)("You may need to "),'<a class="cancel-create" href="javascript:void(0)">',(0,y.default)("cancel"),"</a> ",(0,y.default)("and reselect new elements"),".","</span>","</div>","</div>",'<div class="footer flex-row no-flex">','<div class="actions clear vertically-spaced">','<div class="other-options pull-left">','<button class="cancel-create btn" tabindex="-1">',(0,y.default)("Cancel"),"</button>","</div>","</div>","</div>"].join(""))}),toString:function(){return"ListCollectionCreator"}}),$=function(e,t,i){var s,o=a.Deferred(),l=Galaxy.modal||new _.default.View;return t=n.defaults(t||{},{elements:e,oncancel:function(){l.hide(),o.reject("cancelled")},oncreate:function(e,t){l.hide(),o.resolve(t)}}),s=new i(t),l.show({title:t.title||(0,y.default)("Create a collection"),body:s.$el,width:"80%",height:"100%",closing_events:!0}),s.render(),window._collectionCreator=s,o},C=function(e,t){return t=t||{},t.title=(0,y.default)("Create a collection from a list of datasets"),$(e,t,x)};t.default={DatasetCollectionElementView:b,ListCollectionCreator:x,collectionCreatorModal:$,listCollectionCreatorModal:C,createListCollection:l}}).call(t,i(2),i(1),i(0),i(0))},function(e,t,i){"use strict";(function(e,n){function s(t,i,n){return Galaxy.modal.show({title:i,body:t,closing_events:!0,buttons:{Ok:function(){Galaxy.modal.hide()}}}),Galaxy.modal.$el.addClass("error-modal"),n&&(Galaxy.modal.$(".error-details").add(Galaxy.modal.$('button:contains("Details")')).remove(),e("<div/>").addClass("error-details").hide().appendTo(Galaxy.modal.$(".modal-content")).append([e("<p/>").text(p),e("<pre/>").text(JSON.stringify(n,null,"  "))]),e('<button id="button-1" class="pull-left">'+(0,u.default)("Details")+"</button>").appendTo(Galaxy.modal.$(".buttons")).click(function(){Galaxy.modal.$(".error-details").toggle()})),Galaxy.modal}function a(e,t,i){if(e){if(e=(0,u.default)(e),t=(0,u.default)(t)||(0,u.default)("Error:"),window.Galaxy&&Galaxy.modal)return s(e,t,i);alert(t+"\n\n"+e),console.log("error details:",JSON.stringify(i))}}function o(){return a((0,u.default)("You appear to be offline. Please check your connection and try again."),(0,u.default)("Offline?"))}function l(){return a((0,u.default)("Galaxy is currently unreachable. Please try again in a few minutes.")+" "+h,(0,u.default)("Cannot connect to Galaxy"))}function r(e,t,i,n,s){return n=n||f,n+=" "+h,s=s||(0,u.default)("An error occurred"),a(n,s,d(e,t,i))}function d(e,t,i){return{raven:n.result(window.Raven,"lastEventId"),userAgent:navigator.userAgent,onLine:navigator.onLine,version:n.result(Galaxy.config,"version_major"),xhr:n.omit(t,n.functions(t)),options:n.omit(i,"xhr"),url:n.result(Galaxy.lastAjax,"url"),data:n.result(Galaxy.lastAjax,"data"),model:n.result(e,"toJSON",""+e),user:n.omit(n.result(Galaxy.user,"toJSON"),"email")}}Object.defineProperty(t,"__esModule",{value:!0});var c=i(3),u=function(e){return e&&e.__esModule?e:{default:e}}(c),h=(0,u.default)("Please contact a Galaxy administrator if the problem persists."),f=(0,u.default)("An error occurred while updating information with the server."),p=(0,u.default)("The following information can assist the developers in finding the source of the error:");t.default={errorModal:a,offlineErrorModal:o,badGatewayErrorModal:l,ajaxErrorModal:r}}).call(t,i(0),i(1))},function(e,t,i){"use strict";(function(e){function n(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=i(50),a=n(s),o=i(51),l=n(o),r=i(4),d=n(r),c=i(3),u=(n(c),a.default.DatasetAssociation),h=l.default.HistoryContentMixin,f=u.extend(d.default.mixin(h,{defaults:e.extend({},u.prototype.defaults,h.defaults,{history_content_type:"dataset",model_class:"HistoryDatasetAssociation"})}));t.default={HistoryDatasetAssociation:f}}).call(t,i(1))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(20),l=a(o),r=i(93),d=a(r),c=i(4),u=a(c),h=i(3),f=a(h);i(39);var p=e.View.extend(u.default.LoggableMixin).extend({_logNamespace:"list",viewClass:l.default.ListItemView,collectionClass:e.Collection,tagName:"div",className:"list-panel",fxSpeed:"fast",emptyMsg:(0,f.default)("This list is empty"),noneFoundMsg:(0,f.default)("No matching items found"),searchPlaceholder:(0,f.default)("search"),initialize:function(e,t){e=e||{},e.logger&&(this.logger=e.logger),this.log(this+".initialize:",e),this.fxSpeed=n.has(e,"fxSpeed")?e.fxSpeed:this.fxSpeed,this.filters=[],this.searchFor=e.searchFor||"",this.selecting=void 0===e.selecting||e.selecting,this.selected=e.selected||[],this.lastSelected=null,this.dragItems=e.dragItems||!1,this.viewClass=e.viewClass||this.viewClass,this.views=[],this.collection=e.collection||this._createDefaultCollection(),this.filters=e.filters||[],this.$scrollContainer=e.$scrollContainer||this.$scrollContainer,this.title=e.title||"",this.subtitle=e.subtitle||"",this._setUpListeners()},_setUpListeners:function(){return this.off(),this.on({error:function(e,t,i,n,s){console.error(e,t,i,n,s)},loading:function(){this._showLoadingIndicator("loading...",40)},"loading-done":function(){this._hideLoadingIndicator(40)}}),this.once("rendered",function(){this.trigger("rendered:initial",this)}),this._setUpCollectionListeners(),this._setUpViewListeners(),this},_createDefaultCollection:function(){return new this.collectionClass([])},_setUpCollectionListeners:function(){return this.log(this+"._setUpCollectionListeners",this.collection),this.stopListening(this.collection),this.listenTo(this.collection,{error:function(e,t,i,n,s){this.trigger("error",e,t,i,n,s)},update:function(e,t){var i=t.changes;return t.renderAll||i.added.length+i.removed.length>1?this.renderItems():1===i.added.length?this.addItemView(n.first(i.added),e,t):1===i.removed.length?this.removeItemView(n.first(i.removed),e,t):void 0}}),this},_setUpViewListeners:function(){this.log(this+"._setUpViewListeners"),this.on({"view:selected":function(e,t){if(t&&t.shiftKey&&this.lastSelected){var i=this.viewFromModelId(this.lastSelected);i&&this.selectRange(e,i)}else t&&t.altKey&&!this.selecting&&this.showSelectors();this.selected.push(e.model.id),this.lastSelected=e.model.id},"view:de-selected":function(e,t){this.selected=n.without(this.selected,e.model.id)}})},render:function(e){this.log(this+".render",e);var t=this._buildNewRender();return this._setUpBehaviors(t),this._queueNewRender(t,e),this},_buildNewRender:function(){this.debug(this+"(ListPanel)._buildNewRender");var e=s(this.templates.el({},this));return this._renderControls(e),this._renderTitle(e),this._renderSubtitle(e),this._renderSearch(e),this.renderItems(e),e},_renderControls:function(e){this.debug(this+"(ListPanel)._renderControls");var t=s(this.templates.controls({},this));return e.find(".controls").replaceWith(t),t},_renderTitle:function(e){},_renderSubtitle:function(e){},_queueNewRender:function(e,t){t=void 0===t?this.fxSpeed:t;var i=this;i.log("_queueNewRender:",e,t),s(i).queue("fx",[function(e){i.$el.fadeOut(t,e)},function(t){i._swapNewRender(e),t()},function(e){i.$el.fadeIn(t,e)},function(e){i.trigger("rendered",i),e()}])},_swapNewRender:function(e){return this.$el.empty().attr("class",this.className).append(e.children()),this.selecting&&this.showSelectors(0),this},_setUpBehaviors:function(e){return e=e||this.$el,this.$controls(e).find("[title]").tooltip(),this._renderMultiselectActionMenu(e),this},_renderMultiselectActionMenu:function(e){e=e||this.$el;var t=e.find(".list-action-menu"),i=this.multiselectActions();if(!i.length)return t.empty();var n=s(['<div class="list-action-menu btn-group">','<button class="list-action-menu-btn btn btn-default dropdown-toggle" data-toggle="dropdown">',(0,f.default)("For all selected"),"...","</button>",'<ul class="dropdown-menu pull-right" role="menu">',"</ul>","</div>"].join("")),a=i.map(function(e){var t=['<li><a href="javascript:void(0);">',e.html,"</a></li>"].join("");return s(t).click(function(t){return t.preventDefault(),e.func(t)})});return n.find("ul").append(a),t.replaceWith(n),n},multiselectActions:function(){return[]},$scrollContainer:function(e){return(e||this.$el).parent().parent()},$controls:function(e){return(e||this.$el).find("> .controls")},$list:function(e){return(e||this.$el).find("> .list-items")},$messages:function(e){return(e||this.$el).find("> .controls .messages")},$emptyMessage:function(e){return(e||this.$el).find("> .empty-message")},renderItems:function(e){e=e||this.$el;var t=this;t.log(this+".renderItems",e);var i=t.$list(e);t.freeViews();var n=t._filterCollection();return t.views=n.map(function(e){return t._createItemView(e)}),i.empty(),t.views.length&&t._attachItems(e),t._renderEmptyMessage(e).toggle(!t.views.length),t.trigger("views:ready",t.views),t.views},_filterCollection:function(){var e=this;return e.collection.filter(n.bind(e._filterItem,e))},_filterItem:function(e){var t=this;return n.every(t.filters.map(function(t){return t.call(e)}))&&(!t.searchFor||e.matchesAll(t.searchFor))},_createItemView:function(e){var t=this._getItemViewClass(e),i=n.extend(this._getItemViewOptions(e),{model:e}),s=new t(i);return this._setUpItemViewListeners(s),s},_destroyItemView:function(e){this.stopListening(e),this.views=n.without(this.views,e)},_destroyItemViews:function(e){var t=this;return t.views.forEach(function(e){t.stopListening(e)}),t.views=[],t},freeViews:function(){return this._destroyItemViews()},_getItemViewClass:function(e){return this.viewClass},_getItemViewOptions:function(e){return{fxSpeed:this.fxSpeed,expanded:!1,selectable:this.selecting,selected:n.contains(this.selected,e.id),draggable:this.dragItems}},_setUpItemViewListeners:function(e){var t=this;return this.listenTo(e,"all",function(){var e=Array.prototype.slice.call(arguments,0);e[0]="view:"+e[0],t.trigger.apply(t,e)}),this.listenTo(e,"draggable:dragstart",function(e,t){var i={},n=this.getSelectedModels();i=n.length?n.toJSON():[t.model.toJSON()],e.dataTransfer.setData("text",JSON.stringify(i))},this),t},_attachItems:function(e){var t=this;return this.$list(e).append(this.views.map(function(e){return t._renderItemView$el(e)})),this},_renderItemView$el:function(e){return e.render(0).$el},_renderEmptyMessage:function(e){this.debug("_renderEmptyMessage",e,this.searchFor);var t=this.searchFor?this.noneFoundMsg:this.emptyMsg;return this.$emptyMessage(e).text(t)},expandAll:function(){n.each(this.views,function(e){e.expand()})},collapseAll:function(){n.each(this.views,function(e){e.collapse()})},addItemView:function(e,t,i){var n=this,a=n._filterCollection().indexOf(e);if(-1!==a){var o=n._createItemView(e);return s(o).queue("fx",[function(e){n.$emptyMessage().is(":visible")?n.$emptyMessage().fadeOut(n.fxSpeed,e):e()},function(e){n._attachView(o,a),e()}]),o}},_attachView:function(e,t,i){i=!!n.isUndefined(i)||i,t=t||0;var s=this;return s.views.splice(t,0,e),s._insertIntoListAt(t,s._renderItemView$el(e).hide()),s.trigger("view:attached",e),i?e.$el.slideDown(s.fxSpeed,function(){s.trigger("view:attached:rendered")}):(e.$el.show(),s.trigger("view:attached:rendered")),e},_insertIntoListAt:function(e,t){var i=this.$list();return 0===e?i.prepend(t):i.children().eq(e-1).after(t),t},removeItemView:function(e,t,i){var a=this,o=n.find(a.views,function(t){return t.model===e});if(o)return a.views=n.without(a.views,o),a.trigger("view:removed",o),s({}).queue("fx",[function(e){o.$el.fadeOut(a.fxSpeed,e)},function(e){o.remove(),a.trigger("view:removed:rendered"),a.views.length?e():a._renderEmptyMessage().fadeIn(a.fxSpeed,e)}]),o},viewFromModelId:function(e){return n.find(this.views,function(t){return t.model.id===e})},viewFromModel:function(e){return e?this.viewFromModelId(e.id):void 0},viewsWhereModel:function(e){return this.views.filter(function(t){return n.isMatch(t.model.attributes,e)})},viewRange:function(e,t){if(e===t)return e?[e]:[];var i=this.views.indexOf(e),n=this.views.indexOf(t);return-1===i||-1===n?i===n?[]:-1===i?[t]:[e]:i<n?this.views.slice(i,n+1):this.views.slice(n,i+1)},_renderSearch:function(e){return e.find(".controls .search-input").searchInput({placeholder:this.searchPlaceholder,initialVal:this.searchFor,onfirstsearch:n.bind(this._firstSearch,this),onsearch:n.bind(this.searchItems,this),onclear:n.bind(this.clearSearch,this)}),e},_firstSearch:function(e){return this.log("onFirstSearch",e),this.searchItems(e)},searchItems:function(e,t){if(this.log("searchItems",e,this.searchFor,t),!t&&this.searchFor===e)return this;this.searchFor=e,this.renderItems(),this.trigger("search:searching",e,this);var i=this.$("> .controls .search-query");return i.val()!==e&&i.val(e),this},clearSearch:function(e){return this.searchFor="",this.trigger("search:clear",this),this.$("> .controls .search-query").val(""),this.renderItems(),this},THROTTLE_SELECTOR_FX_AT:20,showSelectors:function(e){e=void 0!==e?e:this.fxSpeed,this.selecting=!0,this.$(".list-actions").slideDown(e),e=this.views.length>=this.THROTTLE_SELECTOR_FX_AT?0:e,n.each(this.views,function(t){t.showSelector(e)})},hideSelectors:function(e){e=void 0!==e?e:this.fxSpeed,this.selecting=!1,this.$(".list-actions").slideUp(e),e=this.views.length>=this.THROTTLE_SELECTOR_FX_AT?0:e,n.each(this.views,function(t){t.hideSelector(e)}),this.selected=[],this.lastSelected=null},toggleSelectors:function(){this.selecting?this.hideSelectors():this.showSelectors()},selectAll:function(e){n.each(this.views,function(t){t.select(e)})},deselectAll:function(e){this.lastSelected=null,n.each(this.views,function(t){t.deselect(e)})},selectRange:function(e,t){var i=this.viewRange(e,t);return n.each(i,function(e){e.select()}),i},getSelectedViews:function(){return n.filter(this.views,function(e){return e.selected})},getSelectedModels:function(){return new this.collection.constructor(n.map(this.getSelectedViews(),function(e){return e.model}))},_showLoadingIndicator:function(e,t,i){this.debug("_showLoadingIndicator",this.indicator,e,t,i),t=void 0!==t?t:this.fxSpeed,this.indicator||(this.indicator=new d.default(this.$el),this.debug("\t created",this.indicator)),this.$el.is(":visible")?(this.$el.fadeOut(t),this.indicator.show(e,t,i)):this.indicator.show(0,i)},_hideLoadingIndicator:function(e,t){this.debug("_hideLoadingIndicator",this.indicator,e,t),e=void 0!==e?e:this.fxSpeed,this.indicator&&this.indicator.hide(e,t)},scrollPosition:function(){return this.$scrollContainer().scrollTop()},scrollTo:function(e,t){return t=t||0,this.$scrollContainer().animate({scrollTop:e},t),this},scrollToTop:function(e){return this.scrollTo(0,e)},scrollToItem:function(e,t){return this},scrollToId:function(e,t){return this.scrollToItem(this.viewFromModelId(e),t)},events:{"click .select-all":"selectAll","click .deselect-all":"deselectAll"},toString:function(){return"ListPanel("+this.collection+")"}});p.prototype.templates=function(){return{el:u.default.wrapTemplate(["<div>",'<div class="controls"></div>','<div class="list-items"></div>','<div class="empty-message infomessagesmall"></div>',"</div>"]),controls:u.default.wrapTemplate(['<div class="controls">','<div class="title">','<div class="name"><%- view.title %></div>',"</div>",'<div class="subtitle"><%- view.subtitle %></div>','<div class="actions"></div>','<div class="messages"></div>','<div class="search">','<div class="search-input"></div>',"</div>",'<div class="list-actions">','<div class="btn-group">','<button class="select-all btn btn-default"','data-mode="select">',(0,f.default)("All"),"</button>",'<button class="deselect-all btn btn-default"','data-mode="select">',(0,f.default)("None"),"</button>","</div>",'<div class="list-action-menu btn-group">',"</div>","</div>","</div>"])}}();var m=p.extend({modelCollectionKey:"contents",initialize:function(e){p.prototype.initialize.call(this,e),this.selecting=void 0!==e.selecting&&e.selecting,this.setModel(this.model,e)},setModel:function(e,t){if(t=t||{},this.debug(this+".setModel:",e,t),this.freeModel(),this.freeViews(),e){var i=this.model?this.model.get("id"):null;this.model=e,this.logger&&(this.model.logger=this.logger),this._setUpModelListeners(),this.stopListening(this.collection),this.collection=this.model[this.modelCollectionKey]||t.collection||this._createDefaultCollection(),this._setUpCollectionListeners(),i&&e.get("id")!==i&&this.trigger("new-model",this)}return this},freeModel:function(){return this.model&&this.stopListening(this.model),this},_setUpModelListeners:function(){return this.log(this+"._setUpModelListeners",this.model),this.listenTo(this.model,"error",function(){var e=Array.prototype.slice.call(arguments,0);e.unshift("error"),this.trigger.apply(this,e)},this),this.logger&&this.listenTo(this.model,"all",function(e){this.info(this+"(model)",e,arguments)}),this},_renderControls:function(e){this.debug(this+"(ModelListPanel)._renderControls");var t=this.model?this.model.toJSON():{},i=s(this.templates.controls(t,this));return e.find(".controls").replaceWith(i),i},toString:function(){return"ModelListPanel("+this.model+")"}});m.prototype.templates=function(){var e=u.default.wrapTemplate(['<div class="controls">','<div class="title">','<div class="name"><%- model.name %></div>',"</div>",'<div class="subtitle"><%- view.subtitle %></div>','<div class="actions"></div>','<div class="messages"></div>','<div class="search">','<div class="search-input"></div>',"</div>",'<div class="list-actions">','<div class="btn-group">','<button class="select-all btn btn-default"','data-mode="select">',(0,f.default)("All"),"</button>",'<button class="deselect-all btn btn-default"','data-mode="select">',(0,f.default)("None"),"</button>","</div>",'<div class="list-action-menu btn-group">',"</div>","</div>","</div>"]);return n.extend(n.clone(p.prototype.templates),{controls:e})}(),t.default={ListPanel:p,ModelListPanel:m}}).call(t,i(2),i(1),i(0))},function(e,t,i){"use strict";function n(e,t){function i(e){o(this).parent().children("input").val("").trigger("searchInput.clear").blur(),t.onclear()}function n(e,n){if(!n)return i();o(this).trigger("search.search",n),"function"==typeof t.onfirstsearch&&u?(u=!1,t.onfirstsearch(n)):t.onsearch(n)}function s(){return['<input type="text" name="',t.name,'" placeholder="',t.placeholder,'" ','class="search-query ',t.classes,'" ',"/>"].join("")}var r=27,d=13,c=o(e),u=!0,h={initialVal:"",name:"search",placeholder:"search",classes:"",onclear:function(){},onfirstsearch:null,onsearch:function(e){},minSearchLen:0,escWillClear:!0,oninit:function(){}};return"string"===a.default.type(t)?("toggle-loading"===t&&function(){c.find(".search-loading").toggle(),c.find(".search-clear").toggle()}(),c):("object"===a.default.type(t)&&(t=a.default.extend(!0,{},h,t)),c.addClass("search-input").prepend([function(){return o(s()).focus(function(e){o(this).select()}).keyup(function(e){if(e.preventDefault(),e.stopPropagation(),e.which===r&&t.escWillClear)i.call(this,e);else{var s=o(this).val();(e.which===d||t.minSearchLen&&s.length>=t.minSearchLen)&&n.call(this,e,s)}}).val(t.initialVal)}(),function(){return o(['<span class="search-clear fa fa-times-circle" ','title="',l("clear search (esc)"),'"></span>'].join("")).tooltip({placement:"bottom"}).click(function(e){i.call(this,e)})}(),function(){return o(['<span class="search-loading fa fa-spinner fa-spin" ','title="',l("loading..."),'"></span>'].join("")).hide().tooltip({placement:"bottom"})}()]))}var s=i(0),a=function(e){return e&&e.__esModule?e:{default:e}}(s),o=a.default,l=window._l||function(e){return e};a.default.fn.extend({searchInput:function(e){return this.each(function(){return n(this,e)})}})},function(e,t,i){"use strict";(function(e){function n(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=i(17),a=n(s),o=i(4),l=n(o),r=i(58),d=n(r),c=i(3),u=n(c),h=a.default.DatasetListItemView,f=h.extend({className:h.prototype.className+" history-content",initialize:function(e,t){h.prototype.initialize.call(this,e,t)},toString:function(){return"HDAListItemView("+(this.model?""+this.model:"(no model)")+")"}});f.prototype.templates=function(){var t=function(t){return'\n        <div class="title-bar clear" tabindex="0">\n            <span class="state-icon"></span>\n            <div class="title">\n                <span class="hid">'+t.hid+'</span>\n                <span class="name">'+e.escape(t.name)+"</span>\n            </div>\n            </br>\n            "+d.default.nametagTemplate(t)+"\n        </div>\n    "},i=e.extend({},h.prototype.templates.warnings,{hidden:l.default.wrapTemplate(["<% if( !dataset.visible ){ %>",'<div class="hidden-msg warningmessagesmall">',(0,u.default)("This dataset has been hidden"),"</div>","<% } %>"],"dataset")});return 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_.prototype._swapNewRender.call(this,e),this.model.has("state")&&this.$el.addClass("state-"+this.model.get("state")),this.$el},_renderPrimaryActions:function(){return[this._renderDisplayButton()]},_renderDisplayButton:function(){var e=this.model.get("state");if(e===c.default.NOT_VIEWABLE||e===c.default.DISCARDED||!this.model.get("accessible"))return null;var t={target:this.linkTarget,classes:"display-btn"};if(this.model.get("purged"))t.disabled=!0,t.title=(0,g.default)("Cannot display datasets removed from disk");else if(e===c.default.UPLOAD)t.disabled=!0,t.title=(0,g.default)("This dataset must finish uploading before it can be viewed");else if(e===c.default.NEW)t.disabled=!0,t.title=(0,g.default)("This dataset is not yet viewable");else{t.title=(0,g.default)("View data"),t.href=this.model.urls.display;var i=this;t.onclick=function(e){Galaxy.frame&&Galaxy.frame.active&&(Galaxy.frame.addDataset(i.model.get("id")),e.preventDefault())}}return t.faIcon="fa-eye",(0,h.default)(t)},_renderDetails:function(){if(this.model.get("state")===c.default.NOT_VIEWABLE)return a(this.templates.noAccess(this.model.toJSON(),this));var e=_.prototype._renderDetails.call(this);return e.find(".actions .left").empty().append(this._renderSecondaryActions()),e.find(".summary").html(this._renderSummary()).prepend(this._renderDetailMessages()),e.find(".display-applications").html(this._renderDisplayApplications()),this._setUpBehaviors(e),e},_renderSummary:function(){var e=this.model.toJSON(),t=this.templates.summaries[e.state];return(t=t||this.templates.summaries.unknown)(e,this)},_renderDetailMessages:function(){var t=this,i=a('<div class="detail-messages"></div>'),n=t.model.toJSON();return e.each(t.templates.detailMessages,function(e){i.append(a(e(n,t)))}),i},_renderDisplayApplications:function(){return this.model.isDeletedOrPurged()?"":[this.templates.displayApplications(this.model.get("display_apps"),this),this.templates.displayApplications(this.model.get("display_types"),this)].join("")},_renderSecondaryActions:function(){switch(this.debug("_renderSecondaryActions"),this.model.get("state")){case c.default.NOT_VIEWABLE:return[];case c.default.OK:case c.default.FAILED_METADATA:case c.default.ERROR:return[this._renderDownloadButton(),this._renderShowParamsButton()]}return[this._renderShowParamsButton()]},_renderShowParamsButton:function(){return(0,h.default)({title:(0,g.default)("View details"),classes:"params-btn",href:this.model.urls.show_params,target:this.linkTarget,faIcon:"fa-info-circle",onclick:function(e){Galaxy.frame&&Galaxy.frame.active&&(Galaxy.frame.add({title:(0,g.default)("Dataset details"),url:this.href}),e.preventDefault(),e.stopPropagation())}})},_renderDownloadButton:function(){return this.model.get("purged")||!this.model.hasData()?null:e.isEmpty(this.model.get("meta_files"))?a('\n                <a class="download-btn icon-btn" href="'+this.model.urls.download+'" title="'+(0,g.default)("Download")+'">\n                    <span class="fa fa-floppy-o"></span>\n                </a>'):this._renderMetaFileDownloadButton()},_renderMetaFileDownloadButton:function(){var t=this.model.urls;return a('\n                <div class="metafile-dropdown dropdown">\n                    <a class="download-btn icon-btn" href="'+t.download+'" data-toggle="dropdown" title="'+(0,g.default)("Download")+'">\n                        <span class="fa fa-floppy-o"></span>\n                    </a>\n                    <ul class="dropdown-menu" role="menu" aria-labelledby="dLabel">\n                        <li>\n                            <a href="'+t.download+'">\n                                '+(0,g.default)("Download dataset")+"\n                            </a>\n                        </li>\n                        "+e.map(this.model.get("meta_files"),function(e){return'<li>\n                                    <a href="'+(t.meta_download+e.file_type)+'">\n                                        '+(0,g.default)("Download")+" "+e.file_type+"\n                                    </a>\n                                </li>"})+"\n                    </ul>\n                </div>")},_renderNametags:function(){return e.template(["<% _.each(_.sortBy(_.uniq(tags), function(x) { return x }), function(tag){ %>",'<% if (tag.indexOf("name:") == 0){ %>','<span class="label label-info"><%- tag.slice(5) %></span>',"<% } %>","<% }); %>"].join(""))({tags:this.model.get("tags")})},events:e.extend(e.clone(_.prototype.events),{"click .display-btn":function(e){this.trigger("display",this,e)},"click .params-btn":function(e){this.trigger("params",this,e)},"click .download-btn":function(e){this.trigger("download",this,e)}}),toString:function(){return"DatasetListItemView("+(this.model?""+this.model:"(no model)")+")"}});v.prototype.templates=function(){var t=e.extend({},_.prototype.templates.warnings,{failed_metadata:p.default.wrapTemplate(['<% if( model.state === "failed_metadata" ){ %>','<div class="warningmessagesmall">',(0,g.default)("An error occurred setting the metadata for this dataset"),"</div>","<% } %>"]),error:p.default.wrapTemplate(["<% if( model.error ){ %>",'<div class="errormessagesmall">',(0,g.default)("There was an error getting the data for this dataset"),": <%- model.error %>","</div>","<% } %>"]),purged:p.default.wrapTemplate(["<% if( model.purged ){ %>",'<div class="purged-msg warningmessagesmall">',(0,g.default)("This dataset has been deleted and removed from disk"),"</div>","<% } %>"]),deleted:p.default.wrapTemplate(["<% if( model.deleted && !model.purged ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,g.default)("This dataset has been deleted"),"</div>","<% } %>"])}),i=p.default.wrapTemplate(['<div class="details">','<div class="summary"></div>','<div class="actions clear">','<div class="left"></div>','<div class="right"></div>',"</div>","<% if( !dataset.deleted && !dataset.purged ){ %>",'<div class="tags-display"></div>','<div class="annotation-display"></div>','<div class="display-applications"></div>',"<% if( dataset.peek ){ %>",'<pre class="dataset-peek"><%= dataset.peek %></pre>',"<% } %>","<% } %>","</div>"],"dataset"),n=p.default.wrapTemplate(['<div class="details">','<div class="summary">',(0,g.default)("You do not have permission to view this dataset"),"</div>","</div>"],"dataset"),s={};s[c.default.OK]=s[c.default.FAILED_METADATA]=p.default.wrapTemplate(["<% if( dataset.misc_blurb ){ %>",'<div class="blurb">','<span class="value"><%- dataset.misc_blurb %></span>',"</div>","<% } %>","<% if( dataset.file_ext ){ %>",'<div class="datatype">','<label class="prompt">',(0,g.default)("format"),"</label>",'<span class="value"><%- dataset.file_ext %></span>',"</div>","<% } %>","<% if( dataset.metadata_dbkey ){ %>",'<div class="dbkey">','<label class="prompt">',(0,g.default)("database"),"</label>",'<span class="value">',"<%- dataset.metadata_dbkey %>","</span>","</div>","<% } %>","<% if( dataset.misc_info ){ %>",'<div class="info">','<span class="value"><%- dataset.misc_info %></span>',"</div>","<% } %>"],"dataset"),s[c.default.NEW]=p.default.wrapTemplate(["<div>",(0,g.default)("This is a new dataset and not all of its data are available yet"),"</div>"],"dataset"),s[c.default.NOT_VIEWABLE]=p.default.wrapTemplate(["<div>",(0,g.default)("You do not have permission to view this dataset"),"</div>"],"dataset"),s[c.default.DISCARDED]=p.default.wrapTemplate(["<div>",(0,g.default)("The job creating this dataset was cancelled before completion"),"</div>"],"dataset"),s[c.default.QUEUED]=p.default.wrapTemplate(["<div>",(0,g.default)("This job is waiting to run"),"</div>"],"dataset"),s[c.default.RUNNING]=p.default.wrapTemplate(["<div>",(0,g.default)("This job is currently running"),"</div>"],"dataset"),s[c.default.UPLOAD]=p.default.wrapTemplate(["<div>",(0,g.default)("This dataset is currently uploading"),"</div>"],"dataset"),s[c.default.SETTING_METADATA]=p.default.wrapTemplate(["<div>",(0,g.default)("Metadata is being auto-detected"),"</div>"],"dataset"),s[c.default.PAUSED]=p.default.wrapTemplate(["<div>",(0,g.default)('This job is paused. Use the "Resume Paused Jobs" in the history menu to resume'),"</div>"],"dataset"),s[c.default.ERROR]=p.default.wrapTemplate(["<% if( !dataset.purged ){ %>","<div><%- dataset.misc_blurb %></div>","<% } %>",'<span class="help-text">',(0,g.default)("An error occurred with this dataset"),":</span>",'<div class="job-error-text"><%- dataset.misc_info %></div>'],"dataset"),s[c.default.EMPTY]=p.default.wrapTemplate(["<div>",(0,g.default)("No data"),": <i><%- dataset.misc_blurb %></i></div>"],"dataset"),s.unknown=p.default.wrapTemplate(['<div>Error: unknown dataset state: "<%- dataset.state %>"</div>'],"dataset");var a={resubmitted:p.default.wrapTemplate(["<% if( model.resubmitted ){ %>",'<div class="resubmitted-msg infomessagesmall">',(0,g.default)("The job creating this dataset has been resubmitted"),"</div>","<% } %>"])},o=p.default.wrapTemplate(["<% _.each( apps, function( app ){ %>",'<div class="display-application">','<span class="display-application-location"><%- app.label %></span> 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this.isNew()&&(t=t||{},t.url=this.urlRoot+this.get("history_id")+"/contents",e=e||{},e.type="dataset_collection"),c.prototype.save.call(this,e,t)},toString:function(){return"History"+c.prototype.toString.call(this)}});t.default={HistoryDatasetCollection:u}}).call(t,i(1))},function(e,t,i){"use strict";(function(e,n,s,a){function o(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var l=i(4),r=o(l),d=i(3),c=(o(d),e.View.extend(r.default.LoggableMixin).extend({_logNamespace:"list",initialize:function(e){this.expanded=e.expanded||!1,this.log("\t expanded:",this.expanded),this.fxSpeed=void 0!==e.fxSpeed?e.fxSpeed:this.fxSpeed},fxSpeed:"fast",render:function(e){var t=this._buildNewRender();return this._setUpBehaviors(t),this._queueNewRender(t,e),this},_buildNewRender:function(){var e=n(this.templates.el(this.model.toJSON(),this));return this.expanded&&this.$details(e).replaceWith(this._renderDetails().show()),e},_queueNewRender:function(e,t){t=void 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e=this,t=e._renderDetails();e.$details().replaceWith(t),e.expanded=!0,e.$details().slideDown(e.fxSpeed,function(){e.trigger("expanded",e)})},collapse:function(){this.debug(this+"(ExpandableView).collapse");var e=this;e.expanded=!1,this.$details().slideUp(e.fxSpeed,function(){e.trigger("collapsed",e)})}})),u=c.extend(r.default.mixin(r.default.SelectableViewMixin,r.default.DraggableViewMixin,{tagName:"div",className:"list-item",initialize:function(e){c.prototype.initialize.call(this,e),r.default.SelectableViewMixin.initialize.call(this,e),r.default.DraggableViewMixin.initialize.call(this,e),this._setUpListeners()},_setUpListeners:function(){return this.on("selectable",function(e){e?this.$(".primary-actions").hide():this.$(".primary-actions").show()},this),this},_buildNewRender:function(){var e=c.prototype._buildNewRender.call(this);return e.children(".warnings").replaceWith(this._renderWarnings()),e.children(".title-bar").replaceWith(this._renderTitleBar()),e.children(".primary-actions").append(this._renderPrimaryActions()),e.find("> .title-bar .subtitle").replaceWith(this._renderSubtitle()),e},_swapNewRender:function(e){return c.prototype._swapNewRender.call(this,e),this.selectable&&this.showSelector(0),this.draggable&&this.draggableOn(),this.$el},_renderWarnings:function(){var e=this,t=n('<div class="warnings"></div>'),i=e.model.toJSON();return s.each(e.templates.warnings,function(s){t.append(n(s(i,e)))}),t},_renderTitleBar:function(){return n(this.templates.titleBar(this.model.toJSON(),this))},_renderPrimaryActions:function(){return[]},_renderSubtitle:function(){return n(this.templates.subtitle(this.model.toJSON(),this))},events:{"click .title-bar":"_clickTitleBar","keydown .title-bar":"_keyDownTitleBar","click .selector":"toggleSelect"},_clickTitleBar:function(e){e.stopPropagation(),e.altKey?(this.toggleSelect(e),this.selectable||this.showSelector()):this.toggleExpanded()},_keyDownTitleBar:function(e){return!e||"keydown"!==e.type||32!==e.keyCode&&13!==e.keyCode||(this.toggleExpanded(),e.stopPropagation(),!1)},toString:function(){return"ListItemView("+(this.model?""+this.model:"(no model)")+")"}}));u.prototype.templates=function(){return{el:r.default.wrapTemplate(['<div class="list-element">','<div class="warnings"></div>','<div class="selector">','<span class="fa fa-2x fa-square-o"></span>',"</div>",'<div class="primary-actions"></div>','<div class="title-bar"></div>','<div class="details"></div>',"</div>"]),warnings:{},titleBar:r.default.wrapTemplate(['<div class="title-bar clear" tabindex="0">','<span class="state-icon"></span>','<div class="title">','<span class="name"><%- element.name %></span>',"</div>",'<div class="subtitle"></div>',"</div>"],"element"),subtitle:r.default.wrapTemplate(['<div class="subtitle"></div>']),details:r.default.wrapTemplate(['<div class="details"></div>'])}}();var h=u.extend({foldoutStyle:"foldout",foldoutPanelClass:null,initialize:function(e){"drilldown"===this.foldoutStyle&&(this.expanded=!1),this.foldoutStyle=e.foldoutStyle||this.foldoutStyle,this.foldoutPanelClass=e.foldoutPanelClass||this.foldoutPanelClass,u.prototype.initialize.call(this,e),this.foldout=this._createFoldoutPanel()},_renderDetails:function(){if("drilldown"===this.foldoutStyle)return n();var e=u.prototype._renderDetails.call(this);return this._attachFoldout(this.foldout,e)},_createFoldoutPanel:function(){var e=this.model,t=this._getFoldoutPanelClass(e),i=this._getFoldoutPanelOptions(e);return new t(s.extend(i,{model:e}))},_getFoldoutPanelClass:function(){return this.foldoutPanelClass},_getFoldoutPanelOptions:function(){return{foldoutStyle:this.foldoutStyle,fxSpeed:this.fxSpeed}},_attachFoldout:function(e,t){return t=t||this.$("> .details"),this.foldout=e.render(0),e.$("> .controls").hide(),t.append(e.$el)},expand:function(){var e=this;return e._fetchModelDetails().always(function(){"foldout"===e.foldoutStyle?e._expand():"drilldown"===e.foldoutStyle&&e._expandByDrilldown()})},_expandByDrilldown:function(){var e=this;e.listenTo(e.foldout,"close",function(){e.trigger("collapsed:drilldown",e,e.foldout)}),e.trigger("expanded:drilldown",e,e.foldout)}});h.prototype.templates=function(){var e=r.default.wrapTemplate(['<div class="details">',"</div>"],"collection");return s.extend({},u.prototype.templates,{details:e})}(),t.default={ExpandableView:c,ListItemView:u,FoldoutListItemView:h}}).call(t,i(2),i(0),i(1),i(0))},function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=i(4),o=s(a),l=i(3),r=s(l),d=e.View.extend(o.default.LoggableMixin).extend(o.default.HiddenUntilActivatedViewMixin).extend({tagName:"div",className:"tags-display",select_width:"100%",events:{},initialize:function(e){this.show_editor=!1,!1===e.usePrompt?this.label="":this.label='<label class="prompt">'+(0,r.default)("Tags")+"</label>",this.workflow_mode=e.workflow_mode||!1,this.workflow_mode&&(this.events.click="showEditor",this.events.keydown="keydownHandler"),this.hiddenUntilActivated(e.$activator,e)},render:function(){var e=this;return this.workflow_mode?this.$el.html(this._workflowTemplate()):this.$el.html(this._defaultTemplate()),this.$input().select2({placeholder:"Add tags",width:this.workflow_mode?this.width:this.select_width,tags:function(){return e._getTagsUsed()}}),this._setUpBehaviors(),this},_hashToName:function(e){return e.startsWith("#")?"name:"+e.slice(1):e},_nameToHash:function(e){return 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n.escape(e._nameToHash(t))}).sort().join(",")},$input:function(){return this.$el.find("input.tags-input")},_getTagsUsed:function(){var e=this;return n.map(Galaxy.user.get("tags_used"),e._nameToHash)},_setUpBehaviors:function(){var e=this;this.$input().on("change",function(t){t.val=n.map(t.val,e._hashToName),e.model.save({tags:t.val}),t.added&&e._addNewTagToTagsUsed(""+t.added.text)})},_addNewTagToTagsUsed:function(e){var t=Galaxy.user.get("tags_used");n.contains(t,e)||(t.push(e),t.sort(),Galaxy.user.set("tags_used",t))},remove:function(){this.$input.off(),this.stopListening(this.model),e.View.prototype.remove.call(this)},toString:function(){return["TagsEditor(",""+this.model,")"].join("")}});t.default={TagsEditor:d}}).call(t,i(2),i(1))},,,,,function(e,t,i){"use strict";(function(e,n,s){Object.defineProperty(t,"__esModule",{value:!0});var a=i(5),o=function(e){return 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e=this;this.options.with_close?this.$close.on("click",function(){e.hide()}).show():this.$close.off().hide()},title:function(e){void 0!==e&&(this.options.title=e,this.$title.html(e))},show:function(){this.render(),this.$el.show(),this.visible=!0},hide:function(){this.$el.hide(),this.visible=!1},append:function(e){this.$body.append(e)},empty:function(){this.$body.empty()},remove:function(){s("body").off("mousedown."+this.uid),this.$el.remove()},_get_placement:function(e){var t,i,n=this._get_width(this.$el),s=this.$el.height(),a=this.options.container,o=this._get_width(a),l=this._get_height(a),r=a.position();if(t=i=0,-1!=["top","bottom"].indexOf(e))switch(i=r.left-n+(o+n)/2,e){case"top":t=r.top-s-5;break;case"bottom":t=r.top+l+5}else switch(t=r.top-s+(l+s)/2,e){case"right":i=r.left+o}return{top:t,left:i}},_get_width:function(e){return 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this.workingElements.length<this.minElements?this._renderInvalid(e,t):(this.$el.empty().html(this.templates.main()),this._renderHeader(e),this._renderMiddle(e),this._renderFooter(e),this._addPluginComponents(),this.$(".collection-name").focus(),this.trigger("rendered",this),this)},_renderInvalid:function(e,t){return this.$el.empty().html(this.templates.invalidInitial({problems:this.invalidElements,elements:this.workingElements})),"function"==typeof this.oncancel&&this.$(".cancel-create.btn").show(),this.trigger("rendered",this),this},_renderHeader:function(e,t){var i=this.$(".header").empty().html(this.templates.header()).find(".help-content").prepend(s(this.templates.helpContent()));return this.invalidElements.length&&this._invalidElementsAlert(),i},_renderMiddle:function(e,t){var i=this.$(".middle").empty().html(this.templates.middle());return this._renderList(e),i},_addPluginComponents:function(){this.$(".help-content 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t=e.source.element;this.removeElementView(e.source),this.workingElements=n.without(this.workingElements,t),this.workingElements.length||this._renderNoElementsLeft()}),this},_errorHandler:function(e){this.error(e);var t=this,i=e.message||(0,y.default)("An error occurred");if(e.xhr){var n=e.xhr,s=e.message;0===n.readyState&&0===n.status?i+=": "+(0,y.default)("Galaxy could not be reached and may be updating.")+(0,y.default)(" Try again in a few minutes."):n.responseJSON?i+=":<br /><pre>"+JSON.stringify(n.responseJSON)+"</pre>":i+=": "+s}t._showAlert(i,"alert-danger")},events:{"click .more-help":"_clickMoreHelp","click .less-help":"_clickLessHelp","click .main-help":"_toggleHelp","click .header .alert button":"_hideAlert","click .reset":"reset","click .clear-selected":"clearSelectedElements","click .collection-elements":"clearSelectedElements","dragover .collection-elements":"_dragoverElements","drop .collection-elements":"_dropElements","collection-element.dragstart 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This interface allows ","you to create a collection and re-order the final collection."].join("")),"</p>","<ul>","<li>",(0,y.default)(["Rename elements in the list by clicking on ",'<i data-target=".collection-element .name">the existing name</i>.'].join("")),"</li>","<li>",(0,y.default)(["Discard elements from the final created list by clicking on the ",'<i data-target=".collection-element .discard">"Discard"</i> button.'].join("")),"</li>","<li>",(0,y.default)(["Reorder the list by clicking and dragging elements. Select multiple elements by clicking on ",'<i data-target=".collection-element">them</i> and you can then move those selected by dragging the ',"entire group. Deselect them by clicking them again or by clicking the ",'the <i data-target=".clear-selected">"Clear selected"</i> link.'].join("")),"</li>","<li>",(0,y.default)(['Click the <i data-target=".reset">"Start over"</i> link to begin again as if you had just opened ',"the interface."].join("")),"</li>","<li>",(0,y.default)(['Click the <i data-target=".cancel-create">"Cancel"</i> button to exit the interface.'].join("")),"</li>","</ul><br />","<p>",(0,y.default)(['Once your collection is complete, enter a <i data-target=".collection-name">name</i> and ','click <i data-target=".create-collection">"Create list"</i>.'].join("")),"</p>"].join("")),invalidElements:n.template([(0,y.default)("The following selections could not be included due to problems:"),"<ul><% _.each( problems, function( problem ){ %>","<li><b><%- problem.element.name %></b>: <%- problem.text %></li>","<% }); %></ul>"].join("")),noElementsLeft:n.template(['<li class="no-elements-left-message">',(0,y.default)("No elements left! 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",(0,y.default)("You may need to "),'<a class="cancel-create" href="javascript:void(0)">',(0,y.default)("cancel"),"</a> ",(0,y.default)("and reselect new elements"),".","</span>","</div>","</div>",'<div class="footer flex-row no-flex">','<div class="actions clear vertically-spaced">','<div class="other-options pull-left">','<button class="cancel-create btn" tabindex="-1">',(0,y.default)("Cancel"),"</button>","</div>","</div>","</div>"].join(""))}),toString:function(){return"ListCollectionCreator"}}),$=function(e,t,i){var s,o=a.Deferred(),l=Galaxy.modal||new _.default.View;return t=n.defaults(t||{},{elements:e,oncancel:function(){l.hide(),o.reject("cancelled")},oncreate:function(e,t){l.hide(),o.resolve(t)}}),s=new i(t),l.show({title:t.title||(0,y.default)("Create a collection"),body:s.$el,width:"80%",height:"100%",closing_events:!0}),s.render(),window._collectionCreator=s,o},C=function(e,t){return t=t||{},t.title=(0,y.default)("Create a collection from a list of 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this.elements&&this.elements.length},toString:function(){this.get("element_identifier");return"DatasetDCE({objStr})"}})),m=f.extend({model:p,toString:function(){return["DatasetDCECollection(",this.length,")"].join("")}}),g=n.Model.extend(d.default.LoggableMixin).extend(d.default.SearchableModelMixin).extend({_logNamespace:"collections",defaults:{collection_type:null,deleted:!1},collectionClass:function(){return this.attributes.collection_type.indexOf(":")>0?v:m},initialize:function(e,t){this.debug(this+"(DatasetCollection).initialize:",e,t,this),this.elements=this._createElementsModel(),this.on("change:elements",function(){this.log("change:elements"),this.elements=this._createElementsModel()})},_createElementsModel:function(){var t=this.collectionClass();this.debug(this+"._createElementsModel",t,this.get("elements"),this.elements);var i=this.get("elements")||[];this.unset("elements",{silent:!0});var n=this;return e.each(i,function(t,i){e.extend(t,{parent_hdca_id:n.get("id")})}),this.elements=new t(i),this.elements},toJSON:function(){var e=n.Model.prototype.toJSON.call(this);return this.elements&&(e.elements=this.elements.toJSON()),e},inReadyState:function(){var e=this.get("populated");return this.isDeletedOrPurged()||e},hasDetails:function(){return 0!==this.elements.length},getVisibleContents:function(e){return this.elements},parse:function(e,t){var i=n.Model.prototype.parse.call(this,e,t);return i.create_time&&(i.create_time=new Date(i.create_time)),i.update_time&&(i.update_time=new Date(i.update_time)),i},delete:function(e){return this.get("deleted")?s.when():this.save({deleted:!0},e)},undelete:function(e){return!this.get("deleted")||this.get("purged")?s.when():this.save({deleted:!1},e)},isDeletedOrPurged:function(){return 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this.contents?this.listenTo(this.contents,{error:function(){this.trigger.apply(this,n.makeArray(arguments))}}):this},contentsShown:function(){var e=this.get("contents_active"),t=e.active||0;return t+=this.contents.includeDeleted?e.deleted:0,t+=this.contents.includeHidden?e.hidden:0},nice_size:function(){var e=this.get("size");return e?f.default.bytesToString(e,!0,2):(0,_.default)("(empty)")},toJSON:function(){return s.extend(e.Model.prototype.toJSON.call(this),{nice_size:this.nice_size()})},get:function(t){return"nice_size"===t?this.nice_size():e.Model.prototype.get.apply(this,arguments)},ownedByCurrUser:function(){return!(!Galaxy||!Galaxy.user)&&(!Galaxy.user.isAnonymous()&&Galaxy.user.id===this.get("user_id"))},numOfUnfinishedJobs:function(){var e=this.get("non_ready_jobs");return e?e.length:0},numOfUnfinishedShownContents:function(){return this.contents.runningAndActive().length||0},_fetchContentRelatedAttributes:function(){var e=["size","non_ready_jobs","contents_active","hid_counter"];return this.fetch({data:a.param({keys:e.join(",")})})},refresh:function(e){var t=this;e=e||{};var i=this.lastUpdateTime;return this.contents.allFetched=!1,(0!==this.contents.currentPage?function(){return t.contents.fetchPage(t.contents.currentPage)}:function(){return t.contents.fetchUpdated(i)})().done(function(i,n,s){var a;try{a=new Date(s.getResponseHeader("Date"))}catch(e){}t.lastUpdateTime=a||new Date,t.checkForUpdates(e)})},checkForUpdates:function(e){var t=this;e=e||{};var i=this.UPDATE_DELAY;if(this.id){var 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this.get("deleted")?n.when():this.save({deleted:!0},e)},purge:function(e){return this.get("purged")?n.when():this.save({deleted:!0,purged:!0},e)},undelete:function(e){return this.get("deleted")?this.save({deleted:!1},e):n.when()},copy:function(e,t,i){if(e=void 0===e||e,!this.id)throw new Error("You must set the history ID before copying it.");var s={history_id:this.id};e&&(s.current=!0),t&&(s.name=t),i||(s.all_datasets=!1),s.view="dev-detailed";var a=this,o=n.post(this.urlRoot,s);return e?o.then(function(e){return new v(e).setAsCurrent().done(function(){a.trigger("copied",a,e)})}):o.done(function(e){a.trigger("copied",a,e)})},setAsCurrent:function(){var e=this,t=n.getJSON(Galaxy.root+"history/set_as_current?id="+this.id);return t.done(function(){e.trigger("set-as-current",e)}),t},toString:function(){return"History("+this.get("id")+","+this.get("name")+")"}})),w=u.default.InfinitelyScrollingCollection,y=w.extend(m.default.LoggableMixin).extend({_logNamespace:"history",model:v,order:"update_time",limitOnFirstFetch:10,limitPerFetch:10,initialize:function(e,t){t=t||{},this.log("HistoryCollection.initialize",e,t),w.prototype.initialize.call(this,e,t),this.includeDeleted=t.includeDeleted||!1,this.currentHistoryId=t.currentHistoryId,this.setUpListeners()},urlRoot:Galaxy.root+"api/histories",url:function(){return this.urlRoot},setUpListeners:function(){return this.on({"change:deleted":function(e){this.debug("change:deleted",this.includeDeleted,e.get("deleted")),!this.includeDeleted&&e.get("deleted")&&this.remove(e)},copied:function(e,t){this.setCurrent(new v(t,[]))},"set-as-current":function(e){var t=this.currentHistoryId;this.trigger("no-longer-current",t),this.currentHistoryId=e.id}})},_buildFetchData:function(e){return s.extend(w.prototype._buildFetchData.call(this,e),{view:"dev-detailed"})},_buildFetchFilters:function(e){var t=w.prototype._buildFetchFilters.call(this,e)||{},i={};return this.includeDeleted?i.deleted=null:(i.deleted=!1,i.purged=!1),s.defaults(t,i)},fetchFirst:function(e){var t=this,i=a.when();return this.currentHistoryId&&(i=w.prototype.fetchFirst.call(t,{silent:!0,limit:1,filters:{purged:"",deleted:"","encoded_id-in":this.currentHistoryId}})),i.then(function(){return e=e||{},e.offset=0,t.fetchMore(e)})},comparators:s.extend(s.clone(w.prototype.comparators),{name:m.default.buildComparator("name",{ascending:!0}),"name-dsc":m.default.buildComparator("name",{ascending:!1}),size:m.default.buildComparator("size",{ascending:!1}),"size-asc":m.default.buildComparator("size",{ascending:!0})}),sort:function(e){e=e||{};var t=e.silent,i=this.remove(this.get(this.currentHistoryId));return w.prototype.sort.call(this,s.defaults({silent:!0},e)),this.unshift(i,{silent:!0}),t||this.trigger("sort",this,e),this},create:function(e,t,i,s){var a=this;return n.getJSON(Galaxy.root+"history/create_new_current").done(function(e){a.setCurrent(new v(e,[],i||{}))})},setCurrent:function(e,t){return t=t||{},this.unshift(e,t),this.currentHistoryId=e.get("id"),t.silent||this.trigger("new-current",e,this),this},toString:function(){return"HistoryCollection("+this.length+",current:"+this.currentHistoryId+")"}});t.default={History:v,HistoryCollection:y}}).call(t,i(2),i(0),i(1),i(0))},function(e,t,i){"use strict";(function(e){Object.defineProperty(t,"__esModule",{value:!0});var n=i(4),s=function(e){return e&&e.__esModule?e:{default:e}}(n),a=s.default.SessionStorageModel.extend({defaults:{expandedIds:{},show_deleted:!1,show_hidden:!1},addExpanded:function(e){var t=this.get("expandedIds");t[e.id]=e.get("id"),this.save("expandedIds",t)},removeExpanded:function(e){var t=this.get("expandedIds");delete t[e.id],this.save("expandedIds",t)},isExpanded:function(t){return e.result(this.get("expandedIds"),t,!1)},allExpanded:function(){return e.values(this.get("expandedIds"))},clearExpanded:function(){this.set("expandedIds",{})},includeDeleted:function(t){return e.isUndefined(t)||this.set("show_deleted",t),this.get("show_deleted")},includeHidden:function(t){return e.isUndefined(t)||this.set("show_hidden",t),this.get("show_hidden")},toString:function(){return"HistoryPrefs("+this.id+")"}},{storageKeyPrefix:"history:",historyStorageKey:function(e){if(!e)throw new Error("HistoryPrefs.historyStorageKey needs valid id: "+e);return a.storageKeyPrefix+e},get:function(e){return new a({id:a.historyStorageKey(e)})},clearAll:function(e){for(var t in 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p=e.View.extend(u.default.LoggableMixin).extend({_logNamespace:"list",viewClass:l.default.ListItemView,collectionClass:e.Collection,tagName:"div",className:"list-panel",fxSpeed:"fast",emptyMsg:(0,f.default)("This list is empty"),noneFoundMsg:(0,f.default)("No matching items found"),searchPlaceholder:(0,f.default)("search"),initialize:function(e,t){e=e||{},e.logger&&(this.logger=e.logger),this.log(this+".initialize:",e),this.fxSpeed=n.has(e,"fxSpeed")?e.fxSpeed:this.fxSpeed,this.filters=[],this.searchFor=e.searchFor||"",this.selecting=void 0===e.selecting||e.selecting,this.selected=e.selected||[],this.lastSelected=null,this.dragItems=e.dragItems||!1,this.viewClass=e.viewClass||this.viewClass,this.views=[],this.collection=e.collection||this._createDefaultCollection(),this.filters=e.filters||[],this.$scrollContainer=e.$scrollContainer||this.$scrollContainer,this.title=e.title||"",this.subtitle=e.subtitle||"",this._setUpListeners()},_setUpListeners:function(){return this.off(),this.on({error:function(e,t,i,n,s){console.error(e,t,i,n,s)},loading:function(){this._showLoadingIndicator("loading...",40)},"loading-done":function(){this._hideLoadingIndicator(40)}}),this.once("rendered",function(){this.trigger("rendered:initial",this)}),this._setUpCollectionListeners(),this._setUpViewListeners(),this},_createDefaultCollection:function(){return new this.collectionClass([])},_setUpCollectionListeners:function(){return this.log(this+"._setUpCollectionListeners",this.collection),this.stopListening(this.collection),this.listenTo(this.collection,{error:function(e,t,i,n,s){this.trigger("error",e,t,i,n,s)},update:function(e,t){var i=t.changes;return t.renderAll||i.added.length+i.removed.length>1?this.renderItems():1===i.added.length?this.addItemView(n.first(i.added),e,t):1===i.removed.length?this.removeItemView(n.first(i.removed),e,t):void 0}}),this},_setUpViewListeners:function(){this.log(this+"._setUpViewListeners"),this.on({"view:selected":function(e,t){if(t&&t.shiftKey&&this.lastSelected){var i=this.viewFromModelId(this.lastSelected);i&&this.selectRange(e,i)}else t&&t.altKey&&!this.selecting&&this.showSelectors();this.selected.push(e.model.id),this.lastSelected=e.model.id},"view:de-selected":function(e,t){this.selected=n.without(this.selected,e.model.id)}})},render:function(e){this.log(this+".render",e);var t=this._buildNewRender();return this._setUpBehaviors(t),this._queueNewRender(t,e),this},_buildNewRender:function(){this.debug(this+"(ListPanel)._buildNewRender");var e=s(this.templates.el({},this));return this._renderControls(e),this._renderTitle(e),this._renderSubtitle(e),this._renderSearch(e),this.renderItems(e),e},_renderControls:function(e){this.debug(this+"(ListPanel)._renderControls");var t=s(this.templates.controls({},this));return e.find(".controls").replaceWith(t),t},_renderTitle:function(e){},_renderSubtitle:function(e){},_queueNewRender:function(e,t){t=void 0===t?this.fxSpeed:t;var i=this;i.log("_queueNewRender:",e,t),s(i).queue("fx",[function(e){i.$el.fadeOut(t,e)},function(t){i._swapNewRender(e),t()},function(e){i.$el.fadeIn(t,e)},function(e){i.trigger("rendered",i),e()}])},_swapNewRender:function(e){return this.$el.empty().attr("class",this.className).append(e.children()),this.selecting&&this.showSelectors(0),this},_setUpBehaviors:function(e){return e=e||this.$el,this.$controls(e).find("[title]").tooltip(),this._renderMultiselectActionMenu(e),this},_renderMultiselectActionMenu:function(e){e=e||this.$el;var t=e.find(".list-action-menu"),i=this.multiselectActions();if(!i.length)return t.empty();var n=s(['<div class="list-action-menu btn-group">','<button class="list-action-menu-btn btn btn-default dropdown-toggle" data-toggle="dropdown">',(0,f.default)("For all selected"),"...","</button>",'<ul class="dropdown-menu pull-right" role="menu">',"</ul>","</div>"].join("")),a=i.map(function(e){var t=['<li><a href="javascript:void(0);">',e.html,"</a></li>"].join("");return s(t).click(function(t){return t.preventDefault(),e.func(t)})});return n.find("ul").append(a),t.replaceWith(n),n},multiselectActions:function(){return[]},$scrollContainer:function(e){return(e||this.$el).parent().parent()},$controls:function(e){return(e||this.$el).find("> .controls")},$list:function(e){return(e||this.$el).find("> .list-items")},$messages:function(e){return(e||this.$el).find("> .controls .messages")},$emptyMessage:function(e){return(e||this.$el).find("> .empty-message")},renderItems:function(e){e=e||this.$el;var t=this;t.log(this+".renderItems",e);var i=t.$list(e);t.freeViews();var n=t._filterCollection();return t.views=n.map(function(e){return t._createItemView(e)}),i.empty(),t.views.length&&t._attachItems(e),t._renderEmptyMessage(e).toggle(!t.views.length),t.trigger("views:ready",t.views),t.views},_filterCollection:function(){var e=this;return e.collection.filter(n.bind(e._filterItem,e))},_filterItem:function(e){var t=this;return n.every(t.filters.map(function(t){return t.call(e)}))&&(!t.searchFor||e.matchesAll(t.searchFor))},_createItemView:function(e){var t=this._getItemViewClass(e),i=n.extend(this._getItemViewOptions(e),{model:e}),s=new t(i);return this._setUpItemViewListeners(s),s},_destroyItemView:function(e){this.stopListening(e),this.views=n.without(this.views,e)},_destroyItemViews:function(e){var t=this;return t.views.forEach(function(e){t.stopListening(e)}),t.views=[],t},freeViews:function(){return this._destroyItemViews()},_getItemViewClass:function(e){return this.viewClass},_getItemViewOptions:function(e){return{fxSpeed:this.fxSpeed,expanded:!1,selectable:this.selecting,selected:n.contains(this.selected,e.id),draggable:this.dragItems}},_setUpItemViewListeners:function(e){var t=this;return this.listenTo(e,"all",function(){var e=Array.prototype.slice.call(arguments,0);e[0]="view:"+e[0],t.trigger.apply(t,e)}),this.listenTo(e,"draggable:dragstart",function(e,t){var i={},n=this.getSelectedModels();i=n.length?n.toJSON():[t.model.toJSON()],e.dataTransfer.setData("text",JSON.stringify(i))},this),t},_attachItems:function(e){var t=this;return this.$list(e).append(this.views.map(function(e){return t._renderItemView$el(e)})),this},_renderItemView$el:function(e){return e.render(0).$el},_renderEmptyMessage:function(e){this.debug("_renderEmptyMessage",e,this.searchFor);var t=this.searchFor?this.noneFoundMsg:this.emptyMsg;return this.$emptyMessage(e).text(t)},expandAll:function(){n.each(this.views,function(e){e.expand()})},collapseAll:function(){n.each(this.views,function(e){e.collapse()})},addItemView:function(e,t,i){var n=this,a=n._filterCollection().indexOf(e);if(-1!==a){var o=n._createItemView(e);return s(o).queue("fx",[function(e){n.$emptyMessage().is(":visible")?n.$emptyMessage().fadeOut(n.fxSpeed,e):e()},function(e){n._attachView(o,a),e()}]),o}},_attachView:function(e,t,i){i=!!n.isUndefined(i)||i,t=t||0;var s=this;return s.views.splice(t,0,e),s._insertIntoListAt(t,s._renderItemView$el(e).hide()),s.trigger("view:attached",e),i?e.$el.slideDown(s.fxSpeed,function(){s.trigger("view:attached:rendered")}):(e.$el.show(),s.trigger("view:attached:rendered")),e},_insertIntoListAt:function(e,t){var i=this.$list();return 0===e?i.prepend(t):i.children().eq(e-1).after(t),t},removeItemView:function(e,t,i){var a=this,o=n.find(a.views,function(t){return t.model===e});if(o)return a.views=n.without(a.views,o),a.trigger("view:removed",o),s({}).queue("fx",[function(e){o.$el.fadeOut(a.fxSpeed,e)},function(e){o.remove(),a.trigger("view:removed:rendered"),a.views.length?e():a._renderEmptyMessage().fadeIn(a.fxSpeed,e)}]),o},viewFromModelId:function(e){return n.find(this.views,function(t){return t.model.id===e})},viewFromModel:function(e){return e?this.viewFromModelId(e.id):void 0},viewsWhereModel:function(e){return this.views.filter(function(t){return n.isMatch(t.model.attributes,e)})},viewRange:function(e,t){if(e===t)return e?[e]:[];var i=this.views.indexOf(e),n=this.views.indexOf(t);return-1===i||-1===n?i===n?[]:-1===i?[t]:[e]:i<n?this.views.slice(i,n+1):this.views.slice(n,i+1)},_renderSearch:function(e){return e.find(".controls .search-input").searchInput({placeholder:this.searchPlaceholder,initialVal:this.searchFor,onfirstsearch:n.bind(this._firstSearch,this),onsearch:n.bind(this.searchItems,this),onclear:n.bind(this.clearSearch,this)}),e},_firstSearch:function(e){return this.log("onFirstSearch",e),this.searchItems(e)},searchItems:function(e,t){if(this.log("searchItems",e,this.searchFor,t),!t&&this.searchFor===e)return this;this.searchFor=e,this.renderItems(),this.trigger("search:searching",e,this);var i=this.$("> .controls .search-query");return i.val()!==e&&i.val(e),this},clearSearch:function(e){return this.searchFor="",this.trigger("search:clear",this),this.$("> .controls .search-query").val(""),this.renderItems(),this},THROTTLE_SELECTOR_FX_AT:20,showSelectors:function(e){e=void 0!==e?e:this.fxSpeed,this.selecting=!0,this.$(".list-actions").slideDown(e),e=this.views.length>=this.THROTTLE_SELECTOR_FX_AT?0:e,n.each(this.views,function(t){t.showSelector(e)})},hideSelectors:function(e){e=void 0!==e?e:this.fxSpeed,this.selecting=!1,this.$(".list-actions").slideUp(e),e=this.views.length>=this.THROTTLE_SELECTOR_FX_AT?0:e,n.each(this.views,function(t){t.hideSelector(e)}),this.selected=[],this.lastSelected=null},toggleSelectors:function(){this.selecting?this.hideSelectors():this.showSelectors()},selectAll:function(e){n.each(this.views,function(t){t.select(e)})},deselectAll:function(e){this.lastSelected=null,n.each(this.views,function(t){t.deselect(e)})},selectRange:function(e,t){var i=this.viewRange(e,t);return n.each(i,function(e){e.select()}),i},getSelectedViews:function(){return n.filter(this.views,function(e){return e.selected})},getSelectedModels:function(){return new this.collection.constructor(n.map(this.getSelectedViews(),function(e){return e.model}))},_showLoadingIndicator:function(e,t,i){this.debug("_showLoadingIndicator",this.indicator,e,t,i),t=void 0!==t?t:this.fxSpeed,this.indicator||(this.indicator=new d.default(this.$el),this.debug("\t created",this.indicator)),this.$el.is(":visible")?(this.$el.fadeOut(t),this.indicator.show(e,t,i)):this.indicator.show(0,i)},_hideLoadingIndicator:function(e,t){this.debug("_hideLoadingIndicator",this.indicator,e,t),e=void 0!==e?e:this.fxSpeed,this.indicator&&this.indicator.hide(e,t)},scrollPosition:function(){return this.$scrollContainer().scrollTop()},scrollTo:function(e,t){return t=t||0,this.$scrollContainer().animate({scrollTop:e},t),this},scrollToTop:function(e){return this.scrollTo(0,e)},scrollToItem:function(e,t){return this},scrollToId:function(e,t){return this.scrollToItem(this.viewFromModelId(e),t)},events:{"click .select-all":"selectAll","click .deselect-all":"deselectAll"},toString:function(){return"ListPanel("+this.collection+")"}});p.prototype.templates=function(){return{el:u.default.wrapTemplate(["<div>",'<div class="controls"></div>','<div class="list-items"></div>','<div class="empty-message infomessagesmall"></div>',"</div>"]),controls:u.default.wrapTemplate(['<div class="controls">','<div class="title">','<div class="name"><%- view.title %></div>',"</div>",'<div class="subtitle"><%- view.subtitle %></div>','<div class="actions"></div>','<div class="messages"></div>','<div class="search">','<div class="search-input"></div>',"</div>",'<div class="list-actions">','<div class="btn-group">','<button class="select-all btn btn-default"','data-mode="select">',(0,f.default)("All"),"</button>",'<button class="deselect-all btn btn-default"','data-mode="select">',(0,f.default)("None"),"</button>","</div>",'<div class="list-action-menu btn-group">',"</div>","</div>","</div>"])}}();var m=p.extend({modelCollectionKey:"contents",initialize:function(e){p.prototype.initialize.call(this,e),this.selecting=void 0!==e.selecting&&e.selecting,this.setModel(this.model,e)},setModel:function(e,t){if(t=t||{},this.debug(this+".setModel:",e,t),this.freeModel(),this.freeViews(),e){var i=this.model?this.model.get("id"):null;this.model=e,this.logger&&(this.model.logger=this.logger),this._setUpModelListeners(),this.stopListening(this.collection),this.collection=this.model[this.modelCollectionKey]||t.collection||this._createDefaultCollection(),this._setUpCollectionListeners(),i&&e.get("id")!==i&&this.trigger("new-model",this)}return this},freeModel:function(){return this.model&&this.stopListening(this.model),this},_setUpModelListeners:function(){return this.log(this+"._setUpModelListeners",this.model),this.listenTo(this.model,"error",function(){var e=Array.prototype.slice.call(arguments,0);e.unshift("error"),this.trigger.apply(this,e)},this),this.logger&&this.listenTo(this.model,"all",function(e){this.info(this+"(model)",e,arguments)}),this},_renderControls:function(e){this.debug(this+"(ModelListPanel)._renderControls");var t=this.model?this.model.toJSON():{},i=s(this.templates.controls(t,this));return e.find(".controls").replaceWith(i),i},toString:function(){return"ModelListPanel("+this.model+")"}});m.prototype.templates=function(){var e=u.default.wrapTemplate(['<div class="controls">','<div class="title">','<div class="name"><%- model.name %></div>',"</div>",'<div class="subtitle"><%- view.subtitle %></div>','<div class="actions"></div>','<div class="messages"></div>','<div class="search">','<div class="search-input"></div>',"</div>",'<div class="list-actions">','<div class="btn-group">','<button class="select-all btn btn-default"','data-mode="select">',(0,f.default)("All"),"</button>",'<button class="deselect-all btn btn-default"','data-mode="select">',(0,f.default)("None"),"</button>","</div>",'<div class="list-action-menu btn-group">',"</div>","</div>","</div>"]);return n.extend(n.clone(p.prototype.templates),{controls:e})}(),t.default={ListPanel:p,ModelListPanel:m}}).call(t,i(2),i(1),i(0))},function(e,t,i){"use strict";function n(e,t){function i(e){o(this).parent().children("input").val("").trigger("searchInput.clear").blur(),t.onclear()}function n(e,n){if(!n)return i();o(this).trigger("search.search",n),"function"==typeof t.onfirstsearch&&u?(u=!1,t.onfirstsearch(n)):t.onsearch(n)}function s(){return['<input type="text" name="',t.name,'" placeholder="',t.placeholder,'" ','class="search-query ',t.classes,'" ',"/>"].join("")}var r=27,d=13,c=o(e),u=!0,h={initialVal:"",name:"search",placeholder:"search",classes:"",onclear:function(){},onfirstsearch:null,onsearch:function(e){},minSearchLen:0,escWillClear:!0,oninit:function(){}};return"string"===a.default.type(t)?("toggle-loading"===t&&function(){c.find(".search-loading").toggle(),c.find(".search-clear").toggle()}(),c):("object"===a.default.type(t)&&(t=a.default.extend(!0,{},h,t)),c.addClass("search-input").prepend([function(){return o(s()).focus(function(e){o(this).select()}).keyup(function(e){if(e.preventDefault(),e.stopPropagation(),e.which===r&&t.escWillClear)i.call(this,e);else{var s=o(this).val();(e.which===d||t.minSearchLen&&s.length>=t.minSearchLen)&&n.call(this,e,s)}}).val(t.initialVal)}(),function(){return o(['<span class="search-clear fa fa-times-circle" ','title="',l("clear search (esc)"),'"></span>'].join("")).tooltip({placement:"bottom"}).click(function(e){i.call(this,e)})}(),function(){return o(['<span class="search-loading fa fa-spinner fa-spin" ','title="',l("loading..."),'"></span>'].join("")).hide().tooltip({placement:"bottom"})}()]))}var s=i(0),a=function(e){return e&&e.__esModule?e:{default:e}}(s),o=a.default,l=window._l||function(e){return e};a.default.fn.extend({searchInput:function(e){return this.each(function(){return n(this,e)})}})},function(e,t,i){"use strict";(function(e){function n(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=i(17),a=n(s),o=i(4),l=n(o),r=i(58),d=n(r),c=i(3),u=n(c),h=a.default.DatasetListItemView,f=h.extend({className:h.prototype.className+" history-content",initialize:function(e,t){h.prototype.initialize.call(this,e,t)},toString:function(){return"HDAListItemView("+(this.model?""+this.model:"(no model)")+")"}});f.prototype.templates=function(){var t=function(t){return'\n        <div class="title-bar clear" tabindex="0">\n            <span class="state-icon"></span>\n            <div class="title">\n                <span class="hid">'+t.hid+'</span>\n                <span class="name">'+e.escape(t.name)+"</span>\n            </div>\n            </br>\n            "+d.default.nametagTemplate(t)+"\n        </div>\n    "},i=e.extend({},h.prototype.templates.warnings,{hidden:l.default.wrapTemplate(["<% if( !dataset.visible ){ %>",'<div class="hidden-msg warningmessagesmall">',(0,u.default)("This dataset has been hidden"),"</div>","<% } %>"],"dataset")});return e.extend({},h.prototype.templates,{titleBar:t,warnings:i})}(),t.default={HDAListItemView:f}}).call(t,i(1))},function(e,t,i){"use strict";(function(e){function n(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=i(8),a=n(s),o=i(33),l=n(o),r=i(59),d=n(r),c=i(4),u=(n(c),i(58)),h=n(u),f=i(3),p=n(f),m=l.default.DCListItemView,g=m.extend({className:m.prototype.className+" history-content",_setUpListeners:function(){var e=this;m.prototype._setUpListeners.call(this);var t=function(t,i){e.render()};this.model.jobStatesSummary&&this.listenTo(this.model.jobStatesSummary,"change",t),this.listenTo(this.model,{"change:tags change:visible change:state":t})},_getFoldoutPanelClass:function(){return d.default.CollectionView},_swapNewRender:function(e){m.prototype._swapNewRender.call(this,e);var t,i=this.model.jobStatesSummary;t=i?i.new()?"loading":i.errored()?"error":i.terminal()?"ok":i.running()?"running":"queued":this.model.get("job_source_id")?"loading":this.model.get("populated_state")?a.default.OK:a.default.RUNNING,this.$el.addClass("state-"+t);var n=this.stateDescription();return this.$(".state-description").html(n),this.$el},stateDescription:function(){var e=this.model,t=(e.get("element_count"),e.get("job_source_type")),i=(this.model.get("collection_type"),d.default.collectionTypeDescription(e)),n=d.default.collectionDescription(e),s=e.jobStatesSummary;if(t&&"Job"!=t){if(s&&s.hasDetails()){var a=s.new(),o=a?null:s.jobCount();if(a)return'\n                        <div class="progress state-progress">\n                            <span class="note">Creating jobs.<span class="blinking">..</span></span>\n                            <div class="progress-bar info" style="width:100%">\n                        </div>';if(s.errored()){return"a "+i+" with "+s.numInError()+" / "+o+" jobs in error"}if(s.terminal())return n;var l=s.states().running||0,r=s.states().ok||0,c=r/(1*o),u=l/(1*o),h=1-c-u;return'\n                        <div class="progress state-progress">\n                            <span class="note">'+(o&&o>1?o+" jobs":"a job")+" generating a "+i+'</span>\n                            <div class="progress-bar ok" style="width:'+100*c+'%"></div>\n                            <div class="progress-bar running" style="width:'+100*u+'%"></div>\n                            <div class="progress-bar new" style="width:'+100*h+'%">\n                        </div>'}return'\n                    <div class="progress state-progress">\n                        <span class="note">Loading job data for '+i+'.<span class="blinking">..</span></span>\n                        <div class="progress-bar info" style="width:100%">\n                    </div>'}return n},toString:function(){return"HDCAListItemView("+(this.model?""+this.model:"(no model)")+")"}});g.prototype.templates=function(){var t=e.extend({},m.prototype.templates.warnings,{hidden:function(e){e.visible||(0,p.default)("This collection has been hidden")}}),i=function(t){return'\n        <div class="title-bar clear" tabindex="0">\n            <span class="state-icon"></span>\n            <div class="title">\n                <span class="hid">'+t.hid+'</span>\n                <span class="name">'+e.escape(t.name)+'</span>\n            </div>\n            <div class="state-description">\n            </div>\n            '+h.default.nametagTemplate(t)+"\n        </div>\n    "};return e.extend({},m.prototype.templates,{warnings:t,titleBar:i})}(),t.default={HDCAListItemView:g}}).call(t,i(1))},,function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(67),l=a(o),r=i(42),d=a(r),c=i(9),u=a(c),h=i(5),f=a(h),p=e.View.extend({el:"body",className:"full-content",_panelids:["left","right"],initialize:function(t){var i=this;this.config=n.defaults(t.config||{},{message_box_visible:!1,message_box_content:"",message_box_class:"info",show_inactivity_warning:!1,inactivity_box_content:""}),Galaxy.modal=this.modal=new u.default.View,Galaxy.display=this.display=function(e){e.title?(f.default.setWindowTitle(e.title),e.allow_title_display=!1):(f.default.setWindowTitle(),e.allow_title_display=!0),i.center.display(e)},Galaxy.router=this.router=t.Router&&new t.Router(i,t),this.masthead=new l.default.View(this.config),this.center=new d.default.CenterPanel,this.$el.attr("scroll","no"),this.$el.html(this._template()),this.$("#masthead").replaceWith(this.masthead.$el),this.$("#center").append(this.center.$el),this.$el.append(this.masthead.frame.$el),this.$el.append(this.modal.$el),this.$messagebox=this.$("#messagebox"),this.$inactivebox=this.$("#inactivebox"),this.panels={},n.each(this._panelids,function(e){var n=e.charAt(0).toUpperCase()+e.slice(1),s=t[n];if(s){var a=new s(i,t);i[a.toString()]=a,i.panels[e]=new d.default.SidePanel({id:e,el:i.$("#"+e),view:a})}}),this.render(),this.router&&e.history.start({root:Galaxy.root,pushState:!0})},render:function(){return s(".select2-hidden-accessible").remove(),this.masthead.render(),this.renderMessageBox(),this.renderInactivityBox(),this.renderPanels(),this._checkCommunicationServerOnline(),this},renderMessageBox:function(){if(this.config.message_box_visible){var e=this.config.message_box_content||"",t=this.config.message_box_class||"info";this.$el.addClass("has-message-box"),this.$messagebox.attr("class","panel-"+t+"-message").html(e).toggle(!!e).show()}else this.$el.removeClass("has-message-box"),this.$messagebox.hide();return this},renderInactivityBox:function(){if(this.config.show_inactivity_warning){var e=this.config.inactivity_box_content||"",t=s("<a/>").attr("href",Galaxy.root+"user/resend_verification").text("Resend verification");this.$el.addClass("has-inactivity-box"),this.$inactivebox.html(e+" ").append(t).toggle(!!e).show()}else this.$el.removeClass("has-inactivity-box"),this.$inactivebox.hide();return this},renderPanels:function(){var e=this;return n.each(this._panelids,function(t){var i=e.panels[t];i?i.render():(e.$("#center").css(t,0),e.$("#"+t).hide())}),this},_template:function(){return['<div id="everything">','<div id="background"/>','<div id="masthead"/>','<div id="messagebox"/>','<div id="inactivebox" 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 //!! this state is not in trans.app.model.Dataset.states - set it here -
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t=e.Model.prototype.toJSON.call(this);return n.extend(t,{urls:this.urls})},isDeletedOrPurged:function(){return this.get("deleted")||this.get("purged")},inReadyState:function(){var e=n.contains(l.default.READY_STATES,this.get("state"));return this.isDeletedOrPurged()||e},hasDetails:function(){return!this.get("accessible")||this.has("annotation")},hasData:function(){return this.get("file_size")>0},fetch:function(t){var i=this;return e.Model.prototype.fetch.call(this,t).always(function(){i._generateUrls()})},parse:function(t,i){var n=e.Model.prototype.parse.call(this,t,i);return n.create_time&&(n.create_time=new Date(n.create_time)),n.update_time&&(n.update_time=new Date(n.update_time)),n},save:function(t,i){return i=i||{},i.wait=!!n.isUndefined(i.wait)||i.wait,e.Model.prototype.save.call(this,t,i)},delete:function(e){return this.get("deleted")?s.when():this.save({deleted:!0},e)},undelete:function(e){return!this.get("deleted")||this.get("purged")?s.when():this.save({deleted:!1},e)},purge:function(e){if(this.get("purged"))return s.when();e=e||{},e.url=this.urls.purge;var t=this,i=s.ajax(e);return i.done(function(e,i,n){t.set({deleted:!0,purged:!0})}),i.fail(function(i,n,s){var a=(0,u.default)("Unable to purge dataset");i.responseJSON&&i.responseJSON.error?a=i.responseJSON.error:-1!==i.responseText.indexOf("Removal of datasets by users is not allowed in this Galaxy instance")&&(a="Removal of datasets by users is not allowed in this Galaxy instance"),i.responseText=a,t.trigger("error",t,i,e,(0,u.default)(a),{error:a})}),i},searchAttributes:["name","file_ext","genome_build","misc_blurb","misc_info","annotation","tags"],searchAliases:{title:"name",format:"file_ext",database:"genome_build",blurb:"misc_blurb",description:"misc_blurb",info:"misc_info",tag:"tags"},toString:function(){var e=this.get("id")||"";return this.get("name")&&(e='"'+this.get("name")+'",'+e),"Dataset("+e+")"}})),p=e.Collection.extend(d.default.LoggableMixin).extend({_logNamespace:"dataset",model:f,urlRoot:Galaxy.root+"api/datasets",url:function(){return this.urlRoot},ids:function(){return this.map(function(e){return e.get("id")})},notReady:function(){return this.filter(function(e){return!e.inReadyState()})},haveDetails:function(){return this.all(function(e){return e.hasDetails()})},ajaxQueue:function(e,t){var i=s.Deferred(),n=this.length,a=[];if(!n)return i.resolve([]),i;var o=this.chain().reverse().map(function(s,l){return function(){var r=e.call(s,t);r.done(function(e){i.notify({curr:l,total:n,response:e,model:s})}),r.always(function(e){a.push(e),o.length?o.shift()():i.resolve(a)})}}).value();return o.shift()(),i},matches:function(e){return this.filter(function(t){return t.matches(e)})},toString:function(){return["DatasetAssociationCollection(",this.length,")"].join("")}});t.default={DatasetAssociation:f,DatasetAssociationCollection:p}}).call(t,i(2),i(1),i(0))},function(e,t,i){"use strict";(function(e){function n(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=i(8),a=(n(s),i(4)),o=(n(a),i(3)),l=(n(o),1e3);try{l=localStorage.getItem("collectionFuzzyCountDefault")||l}catch(e){}var r={defaults:{history_id:null,history_content_type:null,hid:null,visible:!0},idAttribute:"type_id",hidden:function(){return!this.get("visible")},isVisible:function(e,t){var i=!0;return e||!this.get("deleted")&&!this.get("purged")||(i=!1),t||this.get("visible")||(i=!1),i},urlRoot:Galaxy.root+"api/histories/",url:function(){var e=this.get("history_content_type"),t=this.get("history_id"),i=this.get("id"),n=""+this.urlRoot+t+"/contents/"+e+"s/"+i;return"dataset_collection"==e&&(n=n+"?view=element-reference&fuzzy_count="+l),n},hide:function(t){return this.get("visible")?this.save({visible:!1},t):e.when()},unhide:function(t){return this.get("visible")?e.when():this.save({visible:!0},t)},toString:function(){return[this.get("type_id"),this.get("hid"),this.get("name")].join(":")}};t.default={HistoryContentMixin:r}}).call(t,i(0))},function(e,t,i){"use strict";(function(e){Object.defineProperty(t,"__esModule",{value:!0});var i={_validationWarning:function(e,t){"name"===e&&(e=this.$(".collection-name").add(this.$(".collection-name-prompt")),this.$(".collection-name").focus().select()),t?(e=e||this.$(".validation-warning"),e.removeClass("validation-warning")):e.addClass("validation-warning")},_changeHideOriginals:function(e){this.hideOriginals=this.$(".hide-originals").prop("checked")},_changeName:function(e){this._validationWarning("name",!!this._getName())},_nameCheckForEnter:function(e){13!==e.keyCode||this.blocking||this._clickCreate()},_getName:function(){return e.escape(this.$(".collection-name").val())},_clickMoreHelp:function(e){e.stopPropagation(),this.$(".main-help").addClass("expanded"),this.$(".more-help").hide()},_clickLessHelp:function(e){e.stopPropagation(),this.$(".main-help").removeClass("expanded"),this.$(".more-help").show()},_toggleHelp:function(e){e.stopPropagation(),this.$(".main-help").toggleClass("expanded"),this.$(".more-help").toggle()},_showAlert:function(e,t){t=t||"alert-danger",this.$(".main-help").hide(),this.$(".header .alert").attr("class","alert alert-dismissable").addClass(t).show().find(".alert-message").html(e)},_hideAlert:function(e){this.$(".main-help").show(),this.$(".header .alert").hide()},_cancelCreate:function(e){"function"==typeof this.oncancel&&this.oncancel.call(this)},_clickCreate:function(e){var t=this._getName();t?this.blocking||this.createList(t):this._validationWarning("name")},_setUpCommonSettings:function(e){this.hideOriginals=e.defaultHideSourceItems||!1},_renderFooter:function(t,i){var n=this,s=this.$(".footer").empty().html(this.templates.footer());return e.each(this.footerSettings,function(e,t){n.$(t).prop("checked",n[e])}),"function"==typeof this.oncancel&&this.$(".cancel-create.btn").show(),s},_creatorTemplates:{main:e.template(['<div class="header flex-row no-flex"></div>','<div class="middle flex-row flex-row-container"></div>','<div class="footer flex-row no-flex"></div>'].join(""))}};t.default={CollectionCreatorMixin:i}}).call(t,i(1))},function(e,t,i){"use strict";function n(e,t){var i=/(-?[0-9\.]+)/g,n=e.toString().toLowerCase()||"",s=t.toString().toLowerCase()||"",a=String.fromCharCode(0),o=n.replace(i,a+"$1"+a).split(a),l=s.replace(i,a+"$1"+a).split(a),r=new Date(n).getTime(),d=r?new Date(s).getTime():null;if(d){if(r<d)return-1;if(r>d)return 1}for(var c,u,h=0,f=Math.max(o.length,l.length);h<f;h++){if(c=parseFloat(o[h])||o[h],u=parseFloat(l[h])||l[h],c<u)return-1;if(c>u)return 1}return 0}Object.defineProperty(t,"__esModule",{value:!0}),t.default=n},function(e,t,i){"use strict";var n=i(0),s=function(e){return e&&e.__esModule?e:{default:e}}(n),a=s.default;s.default.fn.extend({hoverhighlight:function(e,t){return e=e||"body",this.length?(a(this).each(function(){var i=a(this),n=i.data("target");n&&i.mouseover(function(i){a(n,e).css({background:t})}).mouseout(function(e){a(n).css({background:""})})}),this):this}})},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(9),l=a(o),r=i(36),d=a(r),c=i(3),u=a(c),h={defaultName:e.template("Copy of '<%- name %>'"),title:e.template((0,u.default)("Copying history")+' "<%- name %>"'),submitLabel:(0,u.default)("Copy"),errorMessage:(0,u.default)("History could not be copied."),progressive:(0,u.default)("Copying history"),activeLabel:(0,u.default)("Copy only the active, non-deleted datasets"),allLabel:(0,u.default)("Copy all datasets including deleted ones"),anonWarning:(0,u.default)("As an anonymous user, unless you login or register, you will lose your current history ")+(0,u.default)("after copying this history. "),_template:e.template(["<% if( isAnon ){ %>",'<div class="warningmessage">',"<%- anonWarning %>",(0,u.default)("You can"),' <a href="/user/login">',(0,u.default)("login here"),"</a> ",(0,u.default)("or")," ",' <a href="/user/create">',(0,u.default)("register here"),"</a>.","</div>","<% } %>","<form>",'<label for="copy-modal-title">',(0,u.default)("Enter a title for the new history"),":","</label><br />",'<input id="copy-modal-title" class="form-control" style="width: 100%" value="<%= name %>" />','<p class="invalid-title bg-danger" style="color: red; margin: 8px 0px 8px 0px; display: none">',(0,u.default)("Please enter a valid history title"),"</p>","<% if( allowAll ){ %>","<br />","<p>",(0,u.default)("Choose which datasets from the original history to include:"),"</p>",'<input name="copy-what" type="radio" id="copy-non-deleted" value="copy-non-deleted" ','<% if( copyWhat === "copy-non-deleted" ){ print( "checked" ); } %>/>','<label for="copy-non-deleted"> <%- activeLabel %></label>',"<br />",'<input name="copy-what" type="radio" id="copy-all" value="copy-all" ','<% if( copyWhat === "copy-all" ){ print( "checked" ); } %>/>','<label for="copy-all"> <%- allLabel %></label>',"<% } %>","</form>"].join("")),_showAjaxIndicator:function(){var e='<p><span class="fa fa-spinner fa-spin"></span> '+this.progressive+"...</p>";this.modal.$(".modal-body").empty().append(e).css({"margin-top":"8px"})},dialog:function(t,i,a){function o(){var e=t.$("#copy-modal-title").val();if(!e)return void t.$(".invalid-title").show();var n="copy-all"===t.$('input[name="copy-what"]:checked').val();t.$("button").prop("disabled",!0),l._showAjaxIndicator(),i.copy(!0,e,n).done(function(e){r.resolve(e)}).fail(function(t,s,a){var o={name:e,copyAllDatasets:n};d.default.ajaxErrorModal(i,t,o,l.errorMessage),r.rejectWith(r,arguments)}).done(function(){m&&t.hide()})}a=a||{};var l=this,r=n.Deferred(),c=a.nameFn||this.defaultName,h=c({name:i.get("name")}),f=a.allDatasets?"copy-all":"copy-non-deleted",p=!!e.isUndefined(a.allowAll)||a.allowAll,m=!!e.isUndefined(a.autoClose)||a.autoClose;this.modal=t;var g=a.closing_callback;return t.show(e.extend(a,{title:this.title({name:i.get("name")}),body:s(l._template({name:h,isAnon:Galaxy.user.isAnonymous(),allowAll:p,copyWhat:f,activeLabel:this.activeLabel,allLabel:this.allLabel,anonWarning:this.anonWarning})),buttons:e.object([[(0,u.default)("Cancel"),function(){t.hide()}],[this.submitLabel,o]]),height:"auto",closing_events:!0,closing_callback:function(e){e&&r.reject({cancelled:!0}),g&&g(e)}})),t.$("#copy-modal-title").focus().select(),t.$("#copy-modal-title").on("keydown",function(e){13===e.keyCode&&(e.preventDefault(),o())}),r}},f=e.extend({},h,{defaultName:e.template("imported: <%- name %>"),title:e.template((0,u.default)("Importing history")+' "<%- name %>"'),submitLabel:(0,u.default)("Import"),errorMessage:(0,u.default)("History could not be imported."),progressive:(0,u.default)("Importing history"),activeLabel:(0,u.default)("Import only the active, non-deleted datasets"),allLabel:(0,u.default)("Import all datasets including deleted ones"),anonWarning:(0,u.default)("As an anonymous user, unless you login or register, you will lose your current history ")+(0,u.default)("after importing this history. ")}),p=function(e,t){t=t||{};var i=window.parent.Galaxy.modal||new l.default.View({});return t.useImport?f.dialog(i,e,t):h.dialog(i,e,t)};t.default=p}).call(t,i(1),i(0),i(0))},function(e,t,i){"use strict";(function(e){function n(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var i in e)Object.prototype.hasOwnProperty.call(e,i)&&(t[i]=e[i]);return t.default=e,t}Object.defineProperty(t,"__esModule",{value:!0});var s=i(1),a=n(s),o=i(2),l=n(o),r=i(4),d=function(e){return e&&e.__esModule?e:{default:e}}(r),c=l.Collection.extend({initialize:function(e,t){l.Collection.prototype.initialize.call(this,e,t),this.setOrder(t.order||this.order,{silent:!0})},_setUpListeners:function(){return this.on({"changed-order":this.sort})},fetch:function(e){return e=this._buildFetchOptions(e),Galaxy.debug("fetch options:",e),l.Collection.prototype.fetch.call(this,e)},_buildFetchOptions:function(e){e=a.clone(e)||{};var t=this;e.traditional=!0,e.data=e.data||t._buildFetchData(e),Galaxy.debug("data:",e.data);var i=this._buildFetchFilters(e);return Galaxy.debug("filters:",i),a.isEmpty(i)||a.extend(e.data,this._fetchFiltersToAjaxData(i)),Galaxy.debug("data:",e.data),e},_buildFetchData:function(e){var t={};return this.order&&(t.order=this.order),a.defaults(a.pick(e,this._fetchParams),t)},_fetchParams:["order","limit","offset","view","keys"],_buildFetchFilters:function(e){return a.clone(e.filters||{})},_fetchFiltersToAjaxData:function(e){var t={q:[],qv:[]};return a.each(e,function(e,i){void 0!==e&&""!==e&&(!0===e&&(e="True"),!1===e&&(e="False"),null===e&&(e="None"),t.q.push(i),t.qv.push(e))}),t},reset:function(e,t){return this.allFetched=!1,l.Collection.prototype.reset.call(this,e,t)},order:null,comparators:{update_time:d.default.buildComparator("update_time",{ascending:!1}),"update_time-asc":d.default.buildComparator("update_time",{ascending:!0}),create_time:d.default.buildComparator("create_time",{ascending:!1}),"create_time-asc":d.default.buildComparator("create_time",{ascending:!0})},setOrder:function(e,t){t=t||{};var i=this,n=i.comparators[e];if(a.isUndefined(n))throw new Error("unknown order: "+e);if(n!==i.comparator)return i.order=e,i.comparator=n,t.silent||i.trigger("changed-order",t),i}}),u=c.extend({limitPerPage:500,initialize:function(e,t){c.prototype.initialize.call(this,e,t),this.currentPage=t.currentPage||0},getTotalItemCount:function(){return this.length},shouldPaginate:function(){return this.getTotalItemCount()>=this.limitPerPage},getLastPage:function(){return Math.floor(this.getTotalItemCount()/this.limitPerPage)},getPageCount:function(){return this.getLastPage()+1},getPageLimitOffset:function(e){return e=this.constrainPageNum(e),{limit:this.limitPerPage,offset:e*this.limitPerPage}},constrainPageNum:function(e){return Math.max(0,Math.min(e,this.getLastPage()))},fetchPage:function(e,t){var i=this;return e=i.constrainPageNum(e),i.currentPage=e,t=a.defaults(t||{},i.getPageLimitOffset(e)),i.trigger("fetching-more"),i.fetch(t).always(function(){i.trigger("fetching-more-done")})},fetchCurrentPage:function(e){return this.fetchPage(this.currentPage,e)},fetchPrevPage:function(e){return this.fetchPage(this.currentPage-1,e)},fetchNextPage:function(e){return this.fetchPage(this.currentPage+1,e)}}),h=c.extend({limitOnFirstFetch:null,limitPerFetch:100,initialize:function(e,t){c.prototype.initialize.call(this,e,t),this.limitOnFirstFetch=t.limitOnFirstFetch||this.limitOnFirstFetch,this.limitPerFetch=t.limitPerFetch||this.limitPerFetch,this.allFetched=!1,this.lastFetched=t.lastFetched||0},_buildFetchOptions:function(e){return e.remove=e.remove||!1,c.prototype._buildFetchOptions.call(this,e)},fetchFirst:function(e){return Galaxy.debug("ControlledFetchCollection.fetchFirst:",e),e=e?a.clone(e):{},this.allFetched=!1,this.lastFetched=0,this.fetchMore(a.defaults(e,{reset:!0,limit:this.limitOnFirstFetch}))},fetchMore:function(t){Galaxy.debug("ControlledFetchCollection.fetchMore:",t),t=a.clone(t||{});var i=this;if(Galaxy.debug("fetchMore, options.reset:",t.reset),!t.reset&&i.allFetched)return e.when();t.reset?t.offset=0:void 0===t.offset&&(t.offset=i.lastFetched);var n=t.limit=t.limit||i.limitPerFetch||null;return Galaxy.debug("fetchMore, limit:",n,"offset:",t.offset),i.trigger("fetching-more"),i.fetch(t).always(function(){i.trigger("fetching-more-done")}).done(function(e){var t=a.isArray(e)?e.length:0;i.lastFetched+=t,Galaxy.debug("fetchMore, lastFetched:",i.lastFetched),(!n||t<n)&&(i.allFetched=!0,i.trigger("all-fetched",this))})},fetchAll:function(e){e=e||{};var t=this;return e=a.pick(e,"silent"),e.filters={},t.fetch(e).done(function(){t.allFetched=!0,t.trigger("all-fetched",t)})}});t.default={ControlledFetchCollection:c,PaginatedCollection:u,InfinitelyScrollingCollection:h}}).call(t,i(0))},function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=i(38),o=s(a),l=i(29),r=s(l),d=i(16),c=s(d),u=i(30),h=(s(u),i(40)),f=s(h),p=i(41),m=s(p),g=i(66),_=(s(g),i(36)),v=s(_),w=i(10),y=s(w),b=i(4),x=s(b),$=i(3),C=s($);i(39);var k=o.default.ModelListPanel,S=k.extend({_logNamespace:"history",HDAViewClass:f.default.HDAListItemView,HDCAViewClass:m.default.HDCAListItemView,collectionClass:c.default.HistoryContents,modelCollectionKey:"contents",tagName:"div",className:k.prototype.className+" history-panel",emptyMsg:(0,C.default)("This history is empty"),noneFoundMsg:(0,C.default)("No matching datasets found"),searchPlaceholder:(0,C.default)("search datasets"),initialize:function(e){k.prototype.initialize.call(this,e),this.linkTarget=e.linkTarget||"_blank"},_createDefaultCollection:function(){return new this.collectionClass([],{history:this.model})},freeModel:function(){return k.prototype.freeModel.call(this),this.model&&this.model.stopPolling(),this},_setUpListeners:function(){k.prototype._setUpListeners.call(this),this.on({error:function(e,t,i,n,s){this.errorHandler(e,t,i,n,s)},"views:ready view:attached view:removed":function(e){this._renderSelectButton()},"view:attached":function(e){this.scrollTo(0)}})},loadHistory:function(t,i,n){var s=this;return n=e.extend(n||{silent:!0}),this.info("loadHistory:",t,i,n),this.setModel(new r.default.History({id:t})),n.silent=!0,this.trigger("loading"),this.model.fetchWithContents(i,n).always(function(){s.render(),s.trigger("loading-done")})},refreshContents:function(e){return this.model?this.model.refresh(e):n.when()},_setUpCollectionListeners:function(){return k.prototype._setUpCollectionListeners.call(this),this.listenTo(this.collection,{"fetching-more":function(){this._toggleContentsLoadingIndicator(!0),this.$emptyMessage().hide()},"fetching-more-done":function(){this._toggleContentsLoadingIndicator(!1)}})},_showLoadingIndicator:function(t,i,s){var a=n('<div class="loading-indicator"/>');this.$el.html(a.text(t).slideDown(e.isUndefined(i)?this.fxSpeed:i))},_hideLoadingIndicator:function(t){this.$(".loading-indicator").slideUp(e.isUndefined(t)?this.fxSpeed+200:t,function(){n(this).remove()})},_buildNewRender:function(){var e=k.prototype._buildNewRender.call(this);return this._renderSelectButton(e),e},_renderSelectButton:function(e){if(e=e||this.$el,!this.multiselectActions().length)return null;if(!this.views.length)return this.hideSelectors(),e.find(".controls .actions .show-selectors-btn").remove(),null;var t=e.find(".controls .actions .show-selectors-btn");return t.length?t:(0,y.default)({title:(0,C.default)("Operations on multiple datasets"),classes:"show-selectors-btn",faIcon:"fa-check-square-o"}).prependTo(e.find(".controls .actions"))},_renderEmptyMessage:function(e){var t=this.$emptyMessage(e);return this.model.get("contents_active").active<=0?t.empty().append(this.emptyMsg).show():this.searchFor&&this.model.contents.haveSearchDetails()&&!this.views.length?t.empty().append(this.noneFoundMsg).show():(t.hide(),n())},$scrollContainer:function(e){return this.$list(e)},_toggleContentsLoadingIndicator:function(e){e?this.$list().html('<div class="contents-loading-indicator"><span class="fa fa-2x fa-spinner fa-spin"/></div>'):this.$list().find(".contents-loading-indicator").remove()},renderItems:function(e){e=e||this.$el;var t=this.$list(e);n(".tooltip").remove(),t.empty(),this.views=[];var i=this._filterCollection();return i.length?(this._renderPagination(e),this.views=this._renderSomeItems(i,t)):e.find("> .controls .list-pagination").empty(),this._renderEmptyMessage(e).toggle(!i.length),this.trigger("views:ready",this.views),this.views},_renderPagination:function(e){var t=e.find("> .controls .list-pagination");return this.searchFor||!this.model.contents.shouldPaginate()?t.empty():(t.html(this.templates.pagination({current:this.model.contents.currentPage+1,last:this.model.contents.getLastPage()+1},this)),t.find("select.pages").tooltip(),t)},_renderSomeItems:function(e,t){var i=this,n=[];return t.append(e.map(function(e){var t=i._createItemView(e);return n.push(t),i._renderItemView$el(t)})),n},_filterItem:function(e){var t=this.model.contents;return(t.includeHidden||!e.hidden())&&(t.includeDeleted||!e.isDeletedOrPurged())&&k.prototype._filterItem.call(this,e)},_getItemViewClass:function(e){var t=e.get("history_content_type");switch(t){case"dataset":return this.HDAViewClass;case"dataset_collection":return this.HDCAViewClass}throw new TypeError("Unknown history_content_type: "+t)},_getItemViewOptions:function(t){var i=k.prototype._getItemViewOptions.call(this,t);return e.extend(i,{linkTarget:this.linkTarget,expanded:this.model.contents.storage.isExpanded(t.id),hasUser:this.model.ownedByCurrUser()})},_setUpItemViewListeners:function(e){var t=this;return k.prototype._setUpItemViewListeners.call(t,e),t.listenTo(e,{expanded:function(e){t.model.contents.storage.addExpanded(e.model)},collapsed:function(e){t.model.contents.storage.removeExpanded(e.model)}})},collapseAll:function(){this.model.contents.storage.clearExpanded(),k.prototype.collapseAll.call(this)},getSelectedModels:function(){var e=k.prototype.getSelectedModels.call(this);return e.historyId=this.collection.historyId,e},events:e.extend(e.clone(k.prototype.events),{"click .show-selectors-btn":"toggleSelectors","click > .controls .prev":"_clickPrevPage","click > .controls .next":"_clickNextPage","change > .controls .pages":"_changePageSelect","click .messages [class$=message]":"clearMessages"}),_clickPrevPage:function(e){this.model.stopPolling(),this.model.contents.fetchPrevPage()},_clickNextPage:function(e){this.model.stopPolling(),this.model.contents.fetchNextPage()},_changePageSelect:function(e){this.model.stopPolling();var t=n(e.currentTarget).val();this.model.contents.fetchPage(t)},toggleShowDeleted:function(e,t){e=void 0!==e?e:!this.model.contents.includeDeleted;var i=this.model.contents;return i.setIncludeDeleted(e,t),this.trigger("show-deleted",e),i.fetchCurrentPage({renderAll:!0}),e},toggleShowHidden:function(e,t,i){e=void 0!==e?e:!this.model.contents.includeHidden;var n=this.model.contents;return n.setIncludeHidden(e,i),this.trigger("show-hidden",e),n.fetchCurrentPage({renderAll:!0}),e},_firstSearch:function(e){var t=this;if(this.log("onFirstSearch",e),this.model.contents.haveSearchDetails())return void this.searchItems(e);this.$("> .controls .search-input").searchInput("toggle-loading"),this.searchFor=e;this.model.contents.progressivelyFetchDetails({silent:!0}).progress(function(e,i,n){t.renderItems(),t.trigger("search:loading-progress",i,n)}).always(function(){t.$el.find("> .controls .search-input").searchInput("toggle-loading")}).done(function(){t.searchItems(e,"force")})},clearSearch:function(e){var t=this;return this.searchFor?(this.searchFor="",this.trigger("search:clear",this),this.$("> .controls .search-query").val(""),this.model.contents.fetchCurrentPage({silent:!0}).done(function(){t.renderItems()}),this):this},errorHandler:function(t,i,n){if(!i||0!==i.status||0!==i.readyState){if(this.error(t,i,n),e.isString(t)&&e.isString(i)){var s=t,a=i;return v.default.errorModal(s,a,n)}return i&&502===i.status?v.default.badGatewayErrorModal():v.default.ajaxErrorModal(t,i,n)}},clearMessages:function(t){return(e.isUndefined(t)?this.$messages().children('[class$="message"]'):n(t.currentTarget)).fadeOut(this.fxSpeed,function(){n(this).remove()}),this},scrollToHid:function(t){return this.scrollToItem(e.first(this.viewsWhereModel({hid:t})))},ordinalIndicator:function(e){var t=""+e;switch(t.charAt(t.length-1)){case"1":return t+"st";case"2":return t+"nd";case"3":return t+"rd";default:return t+"th"}},toString:function(){return"HistoryView("+(this.model?this.model.get("name"):"")+")"}});S.prototype.templates=function(){var t=function(){return'<div>\n            <div class="controls"></div>\n            <ul class="list-items"></ul>\n            <div class="empty-message infomessagesmall"></div>\',\n        </div>'},i=x.default.wrapTemplate(['<div class="controls">','<div class="title">','<div class="name"><%- history.name %></div>',"</div>",'<div class="subtitle"></div>','<div class="history-size"><%- history.nice_size %></div>','<div class="actions"></div>','<div class="messages">',"<% if( history.deleted && history.purged ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,C.default)("This history has been purged and deleted"),"</div>","<% } else if( history.deleted ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,C.default)("This history has been deleted"),"</div>","<% } else if( history.purged ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,C.default)("This history has been purged"),"</div>","<% } %>","<% if( history.message ){ %>",'<div class="<%= history.message.level || "info" %>messagesmall">',"<%= history.message.text %>","</div>","<% } %>","</div>",'<div class="tags-display"></div>','<div class="annotation-display"></div>','<div class="search">','<div class="search-input"></div>',"</div>",'<div class="list-actions">','<div class="btn-group">','<button class="select-all btn btn-default"','data-mode="select">',(0,C.default)("All"),"</button>",'<button class="deselect-all btn btn-default"','data-mode="select">',(0,C.default)("None"),"</button>","</div>",'<div class="list-action-menu btn-group">',"</div>","</div>",'<div class="list-pagination form-inline"></div>',"</div>"],"history"),n=x.default.wrapTemplate(['<button class="prev" <%- pages.current === 1 ? "disabled" : "" %>>previous</button>','<select class="pages form-control" ','title="',(0,C.default)("Click to open and select a page. Begin typing a page number to select it"),'">',"<% _.range( 1, pages.last + 1 ).forEach( function( i ){ %>",'<option value="<%- i - 1 %>" <%- i === pages.current ? "selected" : "" %>>',"<%- view.ordinalIndicator( i ) %> of <%- pages.last %> pages","</option>","<% }); %>","</select>",'<button class="next" <%- pages.current === pages.last ? "disabled" : "" %>>next</button>'],"pages");return e.extend(e.clone(k.prototype.templates),{el:t,controls:i,pagination:n})}(),t.default={HistoryView:S}}).call(t,i(1),i(0))},function(e,t,i){"use strict";(function(e){function i(t){return'<span class="label label-info">'+e.escape(t.slice(5))+"</span>"}function n(t){var n=e.filter(e.uniq(t.tags),function(e){return 0===e.indexOf("name:")}),s=e.sortBy(n).map(i);return'\n        <div class="nametags" title="'+n.length+' nametags">\n            '+s.join("")+"\n        </div>"}Object.defineProperty(t,"__esModule",{value:!0}),t.default={nametagTemplate:n}}).call(t,i(1))},function(e,t,i){"use strict";(function(e){function n(e){return e&&e.__esModule?e:{default:e}}function s(e){var t=e.get("collection_type");return"list"==t?(0,f.default)("list"):"paired"==t?(0,f.default)("dataset pair"):"list:paired"==t?(0,f.default)("list of pairs"):(0,f.default)("nested list")}function a(e){var t=e.get("element_count"),i="a "+s(e);if(t){var n;1==t?n="with 1 item":t&&(n="with "+t+" items"),i=i+" "+(0,f.default)(n)}return i}Object.defineProperty(t,"__esModule",{value:!0});var o=i(38),l=n(o),r=i(28),d=(n(r),i(32)),c=n(d),u=i(4),h=(n(u),i(3)),f=n(h),p=l.default.ModelListPanel,m=p.extend({_logNamespace:"collections",className:p.prototype.className+" dataset-collection-panel",DatasetDCEViewClass:c.default.DatasetDCEListItemView,modelCollectionKey:"elements",initialize:function(e){p.prototype.initialize.call(this,e),this.linkTarget=e.linkTarget||"_blank",this.hasUser=e.hasUser,this.panelStack=[],this.parentName=e.parentName,this.foldoutStyle=e.foldoutStyle||"foldout",this.downloadUrl=Galaxy.root+"api/dataset_collections/"+this.model.attributes.id+"/download"},getNestedDCDCEViewClass:function(){return c.default.NestedDCDCEListItemView.extend({foldoutPanelClass:m})},_queueNewRender:function(e,t){t=void 0===t?this.fxSpeed:t;var i=this;this.handleWarning(e),i.log("_queueNewRender:",e,t),i._swapNewRender(e),i.trigger("rendered",i)},handleWarning:function(e){var t=this.views.length,i=this.model.get("element_count");if(i&&i!==t){var n=(0,f.default)("displaying only "+t+" of "+i+" items");e.find(".elements-warning").html('<div class="warningmessagesmall">'+n+"</div>")}},_filterCollection:function(){return this.model.getVisibleContents()},_getItemViewClass:function(e){switch(e.get("element_type")){case"hda":return this.DatasetDCEViewClass;case"dataset_collection":return this.getNestedDCDCEViewClass()}throw new TypeError("Unknown element type:",e.get("element_type"))},_getItemViewOptions:function(t){var i=p.prototype._getItemViewOptions.call(this,t);return e.extend(i,{linkTarget:this.linkTarget,hasUser:this.hasUser,foldoutStyle:this.foldoutStyle})},_setUpItemViewListeners:function(e){var t=this;return p.prototype._setUpItemViewListeners.call(t,e),t.listenTo(e,{"expanded:drilldown":function(e,t){this._expandDrilldownPanel(t)},"collapsed:drilldown":function(e,t){this._collapseDrilldownPanel(t)}}),this},_expandDrilldownPanel:function(e){this.panelStack.push(e),this.$("> .controls").add(this.$list()).hide(),e.parentName=this.model.get("name"),this.$el.append(e.render().$el)},_collapseDrilldownPanel:function(e){this.panelStack.pop(),this.render()},events:{"click .navigation .back":"close"},close:function(e){this.remove(),this.trigger("close")},toString:function(){return"CollectionView("+(this.model?this.model.get("name"):"")+")"}});m.prototype.templates=function(){var t=function(t,i){var n=a(i.model);return'\n        <div class="controls">\n            <div class="navigation">\n            <a class="back" href="javascript:void(0)">\n                <span class="fa fa-icon fa-angle-left"></span>\n                '+(0,f.default)("Back to ")+"\n                "+e.escape(i.parentName)+'\n            </a>\n            </div>\n            <div class="title">\n                <div class="name">'+(e.escape(t.name)||e.escape(t.element_identifier))+'</div>\n                <div class="subtitle">\n                    '+n+'\n                </div>\n            </div>\n            <div class="elements-warning">\n            </div>\n            <div class="tags-display"></div>\n            <div class="actions">\n                <a class="download-btn icon-btn" href="'+i.downloadUrl+'"\n                   title="" download="" data-original-title="Download Collection">\n                   <span class="fa fa-floppy-o"></span>\n                </a>\n            </div>\n        </div>'};return e.extend(e.clone(p.prototype.templates),{controls:t})}(),t.default={collectionTypeDescription:s,collectionDescription:a,CollectionView:m}}).call(t,i(1))},function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=i(8),o=s(a),l=i(17),r=s(l),d=i(21),c=s(d),u=i(61),h=s(u),f=i(10),p=s(f),m=i(4),g=s(m),_=i(3),v=s(_),w=r.default.DatasetListItemView,y=w.extend({initialize:function(e){w.prototype.initialize.call(this,e),this.hasUser=e.hasUser,this.purgeAllowed=e.purgeAllowed||!1,this.tagsEditorShown=e.tagsEditorShown||!1,this.annotationEditorShown=e.annotationEditorShown||!1},_renderPrimaryActions:function(){var e=w.prototype._renderPrimaryActions.call(this);return this.model.get("state")===o.default.NOT_VIEWABLE?e:w.prototype._renderPrimaryActions.call(this).concat([this._renderEditButton(),this._renderDeleteButton()])},_renderEditButton:function(){var t=this;if(this.model.get("state")===o.default.DISCARDED||!this.model.get("accessible"))return null;var i=this.model.get("purged"),n=this.model.get("deleted"),s={title:(0,v.default)("Edit attributes"),href:Galaxy.root+"datasets/edit?dataset_id="+this.model.attributes.id,faIcon:"fa-pencil",classes:"edit-btn",onclick:function(e){Galaxy.router&&(e.preventDefault(),Galaxy.router.push("datasets/edit",{dataset_id:t.model.attributes.id}))}};return n||i?(s.disabled=!0,i?s.title=(0,v.default)("Cannot edit attributes of datasets removed from disk"):n&&(s.title=(0,v.default)("Undelete dataset to edit attributes"))):e.contains([o.default.UPLOAD,o.default.NEW],this.model.get("state"))&&(s.disabled=!0,s.title=(0,v.default)("This dataset is not yet editable")),(0,p.default)(s)},_renderDeleteButton:function(){if(!this.model.get("accessible"))return null;var e=this,t=this.model.isDeletedOrPurged();return(0,p.default)({title:t?(0,v.default)("Dataset is already deleted"):(0,v.default)("Delete"),disabled:t,faIcon:"fa-times",classes:"delete-btn",onclick:function(){e.$el.find(".icon-btn.delete-btn").trigger("mouseout"),e.model.delete()}})},_renderDetails:function(){var t=w.prototype._renderDetails.call(this),i=this.model.get("state");return!this.model.isDeletedOrPurged()&&e.contains([o.default.OK,o.default.FAILED_METADATA],i)&&(this._renderTags(t),this._renderAnnotation(t),this._makeDbkeyEditLink(t)),this._setUpBehaviors(t),t},_renderToolHelpButton:function(){var e=this.model.attributes.dataset_id,t=this.model.attributes.creating_job,i=this,s=function(t){var s='<div id="thdiv-'+e+'" class="toolhelp">';t.name&&t.help?(s+="<strong>Tool help for "+t.name+"</strong><hr/>",s+=t.help):s+="<strong>Tool help is unavailable for this dataset.</strong><hr/>",s+="</div>",i.$el.find(".details").append(n.parseHTML(s))},a=function(e){n.ajax({url:Galaxy.root+"api/tools/"+e.tool_id+"/build"}).done(function(e){s(e)}).fail(function(){s({})})};return null===Galaxy.user.id?null:(0,p.default)({title:(0,v.default)("Tool Help"),classes:"icon-btn",href:"#",faIcon:"fa-question",onclick:function(){i.$el.find(".toolhelp").length>0?i.$el.find(".toolhelp").toggle():n.ajax({url:Galaxy.root+"api/jobs/"+t}).done(function(e){a(e)}).fail(function(){console.log('Failed at recovering job information from the  Galaxy API for job id "'+t+'".')})}})},_renderSecondaryActions:function(){var e=w.prototype._renderSecondaryActions.call(this);switch(this.model.get("state")){case o.default.UPLOAD:case o.default.NOT_VIEWABLE:return e;case o.default.ERROR:return e.unshift(this._renderErrButton()),e.concat([this._renderRerunButton(),this._renderToolHelpButton()]);case o.default.OK:case o.default.FAILED_METADATA:return e.concat([this._renderRerunButton(),this._renderVisualizationsButton(),this._renderToolHelpButton()])}return e.concat([this._renderRerunButton(),this._renderToolHelpButton()])},_renderErrButton:function(){var e=this;return(0,p.default)({title:(0,v.default)("View or report this error"),href:Galaxy.root+"datasets/error?dataset_id="+this.model.attributes.id,classes:"report-error-btn",faIcon:"fa-bug",onclick:function(t){Galaxy.router&&(t.preventDefault(),Galaxy.router.push("datasets/error",{dataset_id:e.model.attributes.id}))}})},_renderRerunButton:function(){var e=this.model.get("creating_job");if(this.model.get("rerunnable"))return(0,p.default)({title:(0,v.default)("Run this job again"),href:this.model.urls.rerun,classes:"rerun-btn",target:this.linkTarget,faIcon:"fa-refresh",onclick:function(t){Galaxy.router&&(t.preventDefault(),Galaxy.router.push("/",{job_id:e}))}})},_renderVisualizationsButton:function(){var t=this.model.get("visualizations");if(this.model.isDeletedOrPurged()||!this.hasUser||!this.model.hasData()||e.isEmpty(t))return null;if(!e.isObject(t[0]))return this.warn("Visualizations have been switched off"),null;var i=n(this.templates.visualizations(t,this));return i.find('[target="galaxy_main"]').attr("target",this.linkTarget),this._addScratchBookFn(i.find(".visualization-link").addBack(".visualization-link")),i},_addScratchBookFn:function(e){e.click(function(e){Galaxy.frame&&Galaxy.frame.active&&(Galaxy.frame.add({title:(0,v.default)("Visualization"),url:n(this).attr("href")}),e.preventDefault(),e.stopPropagation())})},_renderTags:function(e){if(this.hasUser){var t=this;this.tagsEditor=new c.default.TagsEditor({model:this.model,el:e.find(".tags-display"),onshowFirstTime:function(){this.render()},onshow:function(){t.tagsEditorShown=!0},onhide:function(){t.tagsEditorShown=!1},$activator:(0,p.default)({title:(0,v.default)("Edit dataset tags"),classes:"tag-btn",faIcon:"fa-tags"}).appendTo(e.find(".actions .right"))}),this.tagsEditorShown&&this.tagsEditor.toggle(!0)}},_renderAnnotation:function(e){if(this.hasUser){var t=this;this.annotationEditor=new h.default.AnnotationEditor({model:this.model,el:e.find(".annotation-display"),onshowFirstTime:function(){this.render()},onshow:function(){t.annotationEditorShown=!0},onhide:function(){t.annotationEditorShown=!1},$activator:(0,p.default)({title:(0,v.default)("Edit dataset annotation"),classes:"annotate-btn",faIcon:"fa-comment"}).appendTo(e.find(".actions .right"))}),this.annotationEditorShown&&this.annotationEditor.toggle(!0)}},_makeDbkeyEditLink:function(e){if("?"===this.model.get("metadata_dbkey")&&!this.model.isDeletedOrPurged()){var t=n('<a class="value">?</a>').attr("href",this.model.urls.edit).attr("target","_top");e.find(".dbkey .value").replaceWith(t)}},events:e.extend(e.clone(w.prototype.events),{"click .undelete-link":"_clickUndeleteLink","click .purge-link":"_clickPurgeLink","click .edit-btn":function(e){this.trigger("edit",this,e)},"click .delete-btn":function(e){this.trigger("delete",this,e)},"click .rerun-btn":function(e){this.trigger("rerun",this,e)},"click .report-err-btn":function(e){this.trigger("report-err",this,e)},"click .visualization-btn":function(e){this.trigger("visualize",this,e)},"click .dbkey a":function(e){this.trigger("edit",this,e)}}),_clickUndeleteLink:function(e){return this.model.undelete(),!1},_clickPurgeLink:function(e){return confirm((0,v.default)("This will permanently remove the data in your dataset. Are you sure?"))&&this.model.purge(),!1},toString:function(){return"HDAEditView("+(this.model?""+this.model:"(no model)")+")"}});y.prototype.templates=function(){var t=e.extend({},w.prototype.templates.warnings,{failed_metadata:g.default.wrapTemplate(['<% if( dataset.state === "failed_metadata" ){ %>','<div class="failed_metadata-warning warningmessagesmall">',(0,v.default)("An error occurred setting the metadata for this dataset"),'<br /><a href="<%- dataset.urls.edit %>" target="_top">',(0,v.default)("Set it manually or retry auto-detection"),"</a>","</div>","<% } %>"],"dataset"),deleted:g.default.wrapTemplate(["<% if( dataset.deleted && !dataset.purged ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,v.default)("This dataset has been deleted"),'<br /><a class="undelete-link" href="javascript:void(0);">',(0,v.default)("Undelete it"),"</a>","<% if( view.purgeAllowed ){ %>",'<br /><a class="purge-link" href="javascript:void(0);">',(0,v.default)("Permanently remove it from disk"),"</a>","<% } %>","</div>","<% } %>"],"dataset")}),i=g.default.wrapTemplate(["<% if( visualizations.length === 1 ){ %>",'<a class="visualization-link icon-btn" href="<%- visualizations[0].href %>"',' target="<%- visualizations[0].target %>" title="',(0,v.default)("Visualize in"),' <%- visualizations[0].html %>">','<span class="fa fa-bar-chart-o"></span>',"</a>","<% } else { %>",'<div class="visualizations-dropdown dropdown icon-btn">','<a data-toggle="dropdown" title="',(0,v.default)("Visualize"),'">','<span class="fa fa-bar-chart-o"></span>',"</a>",'<ul class="dropdown-menu" role="menu">',"<% _.each( visualizations, function( visualization ){ %>",'<li><a class="visualization-link" href="<%- visualization.href %>"',' target="<%- visualization.target %>">',"<%- visualization.html %>","</a></li>","<% }); %>","</ul>","</div>","<% } %>"],"visualizations");return e.extend({},w.prototype.templates,{warnings:t,visualizations:i})}(),t.default={DatasetListItemEdit:y}}).call(t,i(1),i(0))},function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=i(4),o=s(a),l=i(3),r=s(l);i(15);var d=e.View.extend(o.default.LoggableMixin).extend(o.default.HiddenUntilActivatedViewMixin).extend({tagName:"div",className:"annotation-display",initialize:function(e){e=e||{},this.tooltipConfig=e.tooltipConfig||{placement:"bottom"},this.listenTo(this.model,"change:annotation",function(){this.render()}),this.hiddenUntilActivated(e.$activator,e)},render:function(){var e=this;return this.$el.html(this._template()),this.$annotation().make_text_editable({use_textarea:!0,on_finish:function(t){e.$annotation().text(t),e.model.save({annotation:t},{silent:!0}).fail(function(){e.$annotation().text(e.model.previous("annotation"))})}}),this},_template:function(){var e=this.model.get("annotation");return['<label class="prompt">',(0,r.default)("Annotation"),"</label>",'<div class="annotation">',n.escape(e),"</div>"].join("")},$annotation:function(){return this.$el.find(".annotation")},remove:function(){this.$annotation.off(),this.stopListening(this.model),e.View.prototype.remove.call(this)},toString:function(){return["AnnotationEditor(",""+this.model,")"].join("")}});t.default={AnnotationEditor:d}}).call(t,i(2),i(1))},,,,,,,,,function(e,t,i){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var n=i(2),s=function(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var i in e)Object.prototype.hasOwnProperty.call(e,i)&&(t[i]=e[i]);return t.default=e,t}(n),a=i(31),o=function(e){return e&&e.__esModule?e:{default:e}}(a),l=["new","queued","running"],r=["error","deleted"],d=s.Model.extend({url:function(){return Galaxy.root+"api/histories/"+this.attributes.history_id+"/contents/dataset_collections/"+this.attributes.collection_id+"/jobs_summary"},hasDetails:function(){return this.has("populated_state")},new:function(){return!this.hasDetails()||"new"==this.get("populated_state")},errored:function(){return"error"===this.get("populated_state")||this.anyWithStates(r)},states:function(){return this.get("states")||{}},anyWithState:function(e){return(this.states()[e]||0)>0},anyWithStates:function(e){var t=this.states();for(var i in e)if((t[e[i]]||0)>0)return!0;return!1},numWithStates:function(e){var t=this.states(),i=0;for(var n in e)i+=t[e[n]]||0;return i},numInError:function(){return this.numWithStates(r)},running:function(){return this.anyWithState("running")},terminal:function(){return!this.new()&&!this.anyWithStates(l)},jobCount:function(){var e=this.states(),t=0;for(var i in e)t+=e[i];return t},toString:function(){return"JobStatesSummary(id="+this.get("id")+")"}}),c=s.Collection.extend({model:d,initialize:function(){this.updateTimeoutId=null,this.active=!0},url:function(){var e=this.models.filter(function(e){return!e.terminal()}),t=e.map(function(e){return e.get("id")}).join(","),i=e.map(function(e){return e.get("model")}).join(",");return Galaxy.root+"api/histories/"+this.historyId+"/jobs_summary?ids="+t+"&types="+i},monitor:function(){var e=this;if(this.clearUpdateTimeout(),this.active){var t=function(){e.updateTimeoutId=setTimeout(function(){e.monitor()},2e3)},i=this.models.filter(function(e){return!e.terminal()});if(i.length,!1){var n=i.map(function(e){return function(){return e.fetch()}});return new o.default.AjaxQueue(n).done(t)}i.length>0?this.fetch({remove:!1}).done(t):t()}},clearUpdateTimeout:function(){this.updateTimeoutId&&(clearTimeout(this.updateTimeoutId),this.updateTimeoutId=null)},toString:function(){return"JobStatesSummaryCollection()"}});t.default={JobStatesSummary:d,JobStatesSummaryCollection:c,FETCH_STATE_ON_ADD:!1}},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(57),l=a(o),r=i(16),d=(a(r),i(8)),c=(a(d),i(37)),u=a(c),h=i(72),f=a(h),p=i(94),m=a(p),g=i(21),_=a(g),v=i(61),w=a(v),y=i(35),b=a(y),x=i(97),$=a(x),C=i(98),k=a(C),S=i(10),T=a(S),P=i(47),D=(a(P),i(4)),E=a(D),A=i(3),M=a(A);i(15);var I=l.default.HistoryView,O=I.extend({HDAViewClass:f.default.HDAListItemEdit,HDCAViewClass:m.default.HDCAListItemEdit,initialize:function(e){e=e||{},I.prototype.initialize.call(this,e),this.tagsEditor=null,this.dragItems=!0,this.annotationEditor=null,this.purgeAllowed=e.purgeAllowed||!1,this.annotationEditorShown=e.annotationEditorShown||!1,this.tagsEditorShown=e.tagsEditorShown||!1},_setUpListeners:function(){return I.prototype._setUpListeners.call(this),this.on({"droptarget:drop":function(e,t){this.dataDropped(t),this.dropTargetOff()},"view:attached view:removed":function(){this._renderCounts()},"search:loading-progress":this._renderSearchProgress,"search:searching":this._renderSearchFindings})},_setUpModelListeners:function(){return I.prototype._setUpModelListeners.call(this),this.listenTo(this.model,"change:size",this.updateHistoryDiskSize),this},_setUpCollectionListeners:function(){return I.prototype._setUpCollectionListeners.call(this),this.listenTo(this.collection,{"change:deleted":this._handleItemDeletedChange,"change:visible":this._handleItemVisibleChange,"change:purged":function(e){this.model.fetch()},"fetching-deleted":function(e){this.$("> .controls .deleted-count").html("<i>"+(0,M.default)("loading...")+"</i>")},"fetching-hidden":function(e){this.$("> .controls .hidden-count").html("<i>"+(0,M.default)("loading...")+"</i>")},"fetching-deleted-done fetching-hidden-done":this._renderCounts}),this},_buildNewRender:function(){var e=I.prototype._buildNewRender.call(this);return this.model?(Galaxy&&Galaxy.user&&Galaxy.user.id&&Galaxy.user.id===this.model.get("user_id")&&(this._renderTags(e),this._renderAnnotation(e)),e):e},updateHistoryDiskSize:function(){this.$(".history-size").text(this.model.get("nice_size"))},renderItems:function(e){var t=I.prototype.renderItems.call(this,e);return this.searchFor?this._renderSearchFindings(e):this._renderCounts(e),t},_renderCounts:function(t){t=t instanceof e?t:this.$el;var i=this.templates.counts(this.model.toJSON(),this);return t.find("> .controls .subtitle").html(i)},_renderTags:function(e){var t=this;this.tagsEditor=new _.default.TagsEditor({model:this.model,el:e.find(".controls .tags-display"),onshowFirstTime:function(){this.render()},onshow:function(){t.toggleHDATagEditors(!0,t.fxSpeed)},onhide:function(){t.toggleHDATagEditors(!1,t.fxSpeed)},$activator:(0,T.default)({title:(0,M.default)("Edit history tags"),classes:"history-tag-btn",faIcon:"fa-tags"}).appendTo(e.find(".controls .actions"))})},_renderAnnotation:function(e){var t=this;this.annotationEditor=new w.default.AnnotationEditor({model:this.model,el:e.find(".controls .annotation-display"),onshowFirstTime:function(){this.render()},onshow:function(){t.toggleHDAAnnotationEditors(!0,t.fxSpeed)},onhide:function(){t.toggleHDAAnnotationEditors(!1,t.fxSpeed)},$activator:(0,T.default)({title:(0,M.default)("Edit history annotation"),classes:"history-annotate-btn",faIcon:"fa-comment"}).appendTo(e.find(".controls .actions"))})},_setUpBehaviors:function(e){if(e=e||this.$el,I.prototype._setUpBehaviors.call(this,e),this.model&&Galaxy.user&&!Galaxy.user.isAnonymous()&&Galaxy.user.id===this.model.get("user_id")){var t=this;e.find("> .controls .name").attr("title",(0,M.default)("Click to rename history")).tooltip({placement:"bottom"}).make_text_editable({on_finish:function(e){var i=t.model.get("name");e&&e!==i?(t.$el.find("> .controls .name").text(e),t.model.save({name:e}).fail(function(){t.$el.find("> .controls .name").text(t.model.previous("name"))})):t.$el.find("> .controls .name").text(i)}})}},multiselectActions:function(){var e=this,t=[{html:(0,M.default)("Hide datasets"),func:function(){var t=u.default.HistoryDatasetAssociation.prototype.hide;e.getSelectedModels().ajaxQueue(t)}},{html:(0,M.default)("Unhide datasets"),func:function(){var t=u.default.HistoryDatasetAssociation.prototype.unhide;e.getSelectedModels().ajaxQueue(t)}},{html:(0,M.default)("Delete datasets"),func:function(){var t=u.default.HistoryDatasetAssociation.prototype.delete;e.getSelectedModels().ajaxQueue(t)}},{html:(0,M.default)("Undelete datasets"),func:function(){var t=u.default.HistoryDatasetAssociation.prototype.undelete;e.getSelectedModels().ajaxQueue(t)}}];return e.purgeAllowed&&t.push({html:(0,M.default)("Permanently delete datasets"),func:function(){if(confirm((0,M.default)("This will permanently remove the data in your datasets. Are you sure?"))){var t=u.default.HistoryDatasetAssociation.prototype.purge;e.getSelectedModels().ajaxQueue(t)}}}),t=t.concat(e._collectionActions())},_collectionActions:function(){var e=this;return[{html:(0,M.default)("Build Dataset List"),func:function(){e.buildCollection("list")}},{html:(0,M.default)("Build Dataset Pair"),func:function(){e.buildCollection("paired")}},{html:(0,M.default)("Build List of Dataset Pairs"),func:function(){e.buildCollection("list:paired")}}]},buildCollection:function(e,t,i){var n,s=this,t=t||s.getSelectedModels(),i=i||!1;"list"==e?n=b.default.createListCollection:"paired"==e?n=$.default.createPairCollection:"list:paired"==e?n=k.default.createListOfPairsCollection:console.warn("Unknown collectionType encountered "+e),n(t,i).done(function(){s.model.refresh()})},_getItemViewOptions:function(e){var t=I.prototype._getItemViewOptions.call(this,e);return n.extend(t,{purgeAllowed:this.purgeAllowed,tagsEditorShown:this.tagsEditor&&!this.tagsEditor.hidden,annotationEditorShown:this.annotationEditor&&!this.annotationEditor.hidden}),t},_handleItemDeletedChange:function(e){e.get("deleted")?this._handleItemDeletion(e):this._handleItemUndeletion(e),this._renderCounts()},_handleItemDeletion:function(e){var t=this.model.get("contents_active");t.deleted+=1,t.active-=1,this.model.contents.includeDeleted||this.removeItemView(e),this.model.set("contents_active",t)},_handleItemUndeletion:function(e){var t=this.model.get("contents_active");t.deleted-=1,this.model.contents.includeDeleted||(t.active-=1),this.model.set("contents_active",t)},_handleItemVisibleChange:function(e){e.hidden()?this._handleItemHidden(e):this._handleItemUnhidden(e),this._renderCounts()},_handleItemHidden:function(e){var t=this.model.get("contents_active");t.hidden+=1,t.active-=1,this.model.contents.includeHidden||this.removeItemView(e),this.model.set("contents_active",t)},_handleItemUnhidden:function(e){var t=this.model.get("contents_active");t.hidden-=1,this.model.contents.includeHidden||(t.active-=1),this.model.set("contents_active",t)},toggleHDATagEditors:function(e,t){n.each(this.views,function(i){i.tagsEditor&&i.tagsEditor.toggle(e,t)})},toggleHDAAnnotationEditors:function(e,t){n.each(this.views,function(i){i.annotationEditor&&i.annotationEditor.toggle(e,t)})},events:n.extend(n.clone(I.prototype.events),{"click .show-selectors-btn":"toggleSelectors","click .toggle-deleted-link":function(e){this.toggleShowDeleted()},"click .toggle-hidden-link":function(e){this.toggleShowHidden()}}),_renderSearchProgress:function(e,t){var i=e+t;return this.$("> .controls .subtitle").html(["<i>",(0,M.default)("Searching "),i,"/",this.model.contentsShown(),"</i>"].join(""))},_renderSearchFindings:function(t){t=t instanceof e?t:this.$el;var i=this.templates.found(this.model.toJSON(),this);return t.find("> .controls .subtitle").html(i),this},dropTargetOn:function(){if(this.dropTarget)return this;this.dropTarget=!0;var e={dragenter:n.bind(this.dragenter,this),dragover:n.bind(this.dragover,this),dragleave:n.bind(this.dragleave,this),drop:n.bind(this.drop,this)},t=this._renderDropTarget();this.$list().before([this._renderDropTargetHelp(),t]);for(var i in e)e.hasOwnProperty(i)&&t.on(i,e[i]);return this},_renderDropTarget:function(){return this.$(".history-drop-target").remove(),s("<div/>").addClass("history-drop-target")},_renderDropTargetHelp:function(){return this.$(".history-drop-target-help").remove(),s("<div/>").addClass("history-drop-target-help").text((0,M.default)("Drag datasets here to copy them to the current history"))},dropTargetOff:function(){if(!this.dropTarget)return this;this.dropTarget=!1;var e=this.$(".history-drop-target").get(0);for(var t in this._dropHandlers)this._dropHandlers.hasOwnProperty(t)&&e.off(t,this._dropHandlers[t]);return this.$(".history-drop-target").remove(),this.$(".history-drop-target-help").remove(),this},dropTargetToggle:function(){return this.dropTarget?this.dropTargetOff():this.dropTargetOn(),this},dragenter:function(e){e.preventDefault(),e.stopPropagation(),this.$(".history-drop-target").css("border","2px solid black")},dragover:function(e){e.preventDefault(),e.stopPropagation()},dragleave:function(e){e.preventDefault(),e.stopPropagation(),this.$(".history-drop-target").css("border","1px dashed black")},drop:function(e){e.preventDefault();var t=this,i=e.originalEvent.dataTransfer,n=i.getData("text");i.dropEffect="move";try{n=JSON.parse(n)}catch(e){t.warn("error parsing JSON from drop:",n)}return t.trigger("droptarget:drop",e,n,t),!1},dataDropped:function(t){var i=this;return n.isObject(t)&&"HistoryDatasetAssociation"===t.model_class&&t.id?0!==i.contents.currentPage?i.contents.fetchPage(0).then(function(){return i.model.contents.copy(t.id)}):i.model.contents.copy(t.id):e.when()},toString:function(){return"HistoryViewEdit("+(this.model?this.model.get("name"):"")+")"}});O.prototype.templates=function(){var e=E.default.wrapTemplate(["<% var shown = Math.max( view.views.length, history.contents_active.active ) %>","<% if( shown ){ %>",'<span class="shown-count">',"<%- shown %> ",(0,M.default)("shown"),"</span>","<% } %>","<% if( history.contents_active.deleted ){ %>",'<span class="deleted-count">',"<% if( view.model.contents.includeDeleted ){ %>",'<a class="toggle-deleted-link" href="javascript:void(0);">',(0,M.default)("hide deleted"),"</a>","<% } else { %>","<%- history.contents_active.deleted %> ",'<a class="toggle-deleted-link" href="javascript:void(0);">',(0,M.default)("deleted"),"</a>","<% } %>","</span>","<% } %>","<% if( history.contents_active.hidden ){ %>",'<span class="hidden-count">',"<% if( view.model.contents.includeHidden ){ %>",'<a class="toggle-hidden-link" href="javascript:void(0);">',(0,M.default)("hide hidden"),"</a>","<% } else { %>","<%- history.contents_active.hidden %> ",'<a class="toggle-hidden-link" href="javascript:void(0);">',(0,M.default)("hidden"),"</a>","<% } %>","</span>","<% } %>"],"history"),t=E.default.wrapTemplate([(0,M.default)("Found")," <%- view.views.length %>, ","<% if( history.contents_active.deleted ){ %>","<% if( view.model.contents.includeDeleted ){ %>",'<a class="toggle-deleted-link" href="javascript:void(0);">',(0,M.default)("hide deleted"),"</a>, ","<% } else { %>",'<a class="toggle-deleted-link" href="javascript:void(0);">',(0,M.default)("show deleted"),"</a>, ","<% } %>","<% } %>","<% if( history.contents_active.hidden ){ %>","<% if( view.model.contents.includeHidden ){ %>",'<a class="toggle-hidden-link" href="javascript:void(0);">',(0,M.default)("hide hidden"),"</a>","<% } else { %>",'<a class="toggle-hidden-link" href="javascript:void(0);">',(0,M.default)("show hidden"),"</a>","<% } %>","<% } %>"],"history");return n.extend(n.clone(I.prototype.templates),{counts:e,found:t})}(),t.default={HistoryViewEdit:O}}).call(t,i(0),i(1),i(0))},function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=i(60),o=s(a),l=i(40),r=s(l),d=i(4),c=s(d),u=i(3),h=s(u),f=o.default.DatasetListItemEdit,p=f.extend({className:f.prototype.className+" history-content",_fetchModelDetails:function(){var t=this;return t.model.inReadyState()&&!t.model.hasDetails()?t.model.fetch({silent:!0}):t.model.has("rerunnable")?e.when():t.model.fetch({silent:!0,data:{keys:["rerunnable","creating_job"].join(",")}})},events:n.extend(n.clone(f.prototype.events),{"click .unhide-link":function(e){return this.model.unhide(),!1}}),toString:function(){return"HDAListItemEdit("+(this.model?""+this.model:"(no model)")+")"}});p.prototype.templates=function(){var e=n.extend({},f.prototype.templates.warnings,{hidden:c.default.wrapTemplate(["<% if( !dataset.visible ){ %>",'<div class="hidden-msg warningmessagesmall">',(0,h.default)("This dataset has been hidden"),'<br /><a class="unhide-link" a href="javascript:void(0);">',(0,h.default)("Unhide it"),"</a>","</div>","<% } %>"],"dataset")});return n.extend({},f.prototype.templates,{titleBar:r.default.HDAListItemView.prototype.templates.titleBar,warnings:e})}(),t.default={HDAListItemEdit:p}}).call(t,i(0),i(1))},,,,,,,,,,,,,,,function(e,t,i){"use strict";(function(e){function n(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=i(0),a=n(s),o=i(25),l=n(o),r=i(6),d=n(r),c=a.default,u=e.Router.extend({initialize:function(e,t){this.page=e,this.options=t},push:function(e,t){t=t||{},t.__identifer=Math.random().toString(36).substr(2),c.isEmptyObject(t)||(e+=-1==e.indexOf("?")?"?":"&",e+=c.param(t,!0)),Galaxy.params=t,this.navigate(e,{trigger:!0})},execute:function(e,t,i){Galaxy.debug("router execute:",e,t,i);var n=l.default.parse(t.pop());t.push(n),e&&(this.authenticate(t,i)?e.apply(this,t):this.access_denied())},authenticate:function(e,t){return!0},access_denied:function(){this.page.display(new d.default.Message({status:"danger",message:"You must be logged in with proper credentials to make this request.",persistent:!0}))}});t.default=u}).call(t,i(2))},function(e,t,i){"use strict";(function(e,n,s){Object.defineProperty(t,"__esModule",{value:!0});var a=i(5);!function(e){e&&e.__esModule}(a);t.default=e.View.extend({options:{class_check:"fa-check-square-o",class_uncheck:"fa-square-o",parameters:[{id:"space_to_tab",title:"Convert spaces to tabs"},{id:"to_posix_lines",title:"Use POSIX standard"}]},initialize:function(e){this.model=e.model,this.setElement(n("<div/>").addClass("upload-settings")),this.$el.append(n("<div/>").addClass("upload-settings-cover")),this.$el.append(n("<table/>").addClass("upload-settings-table ui-table-striped").append("<tbody/>")),this.$cover=this.$(".upload-settings-cover"),this.$table=this.$(".upload-settings-table > tbody"),this.listenTo(this.model,"change",this.render,this),this.model.trigger("change")},render:function(){var e=this;this.$table.empty(),s.each(this.options.parameters,function(t){var i=n("<div/>").addClass("upload-"+t.id+" upload-icon-button fa").addClass(e.model.get(t.id)&&e.options.class_check||e.options.class_uncheck).on("click",function(){e.model.get("enabled")&&e.model.set(t.id,!e.model.get(t.id))});e.$table.append(n("<tr/>").append(n("<td/>").append(i)).append(n("<td/>").append(t.title)))}),this.$cover[this.model.get("enabled")&&"hide"||"show"]()}})}).call(t,i(2),i(0),i(1))},function(e,t,i){"use strict";(function(e,n,s){Object.defineProperty(t,"__esModule",{value:!0});var a=i(5),o=function(e){return e&&e.__esModule?e:{default:e}}(a);t.default=e.View.extend({initialize:function(t){this.model=new e.Model({cls:"upload-ftp",class_add:"upload-icon-button fa fa-square-o",class_remove:"upload-icon-button fa fa-check-square-o",class_partial:"upload-icon-button fa fa-minus-square-o",help_enabled:!0,help_text:"This Galaxy server allows you to upload files via FTP. 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r.default.NestedDCDCEListItemEdit.extend({foldoutPanelClass:g})},initialize:function(e){m.prototype.initialize.call(this,e)},_setUpBehaviors:function(e){if(e=e||this.$el,m.prototype._setUpBehaviors.call(this,e),this.model&&Galaxy.user&&!Galaxy.user.isAnonymous()){this.tagsEditorShown=!0;var t=this;e.find("> .controls .name").attr("title",(0,p.default)("Click to rename collection")).tooltip({placement:"bottom"}).make_text_editable({on_finish:function(e){var i=t.model.get("name");e&&e!==i?(t.$el.find("> .controls .name").text(e),t.model.save({name:e}).fail(function(){t.$el.find("> .controls .name").text(t.model.previous("name"))})):t.$el.find("> .controls .name").text(i)}}),this.tagsEditor=new u.default.TagsEditor({model:this.model,el:e.find(".tags-display"),onshowFirstTime:function(){this.render()},usePrompt:!1}),this.tagsEditor.toggle(!0)}},toString:function(){return"CollectionViewEdit("+(this.model?this.model.get("name"):"")+")"}});t.default={CollectionViewEdit:g}},function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=i(32),o=s(a),l=i(60),r=s(l),d=i(4),c=(s(d),i(3)),u=(s(c),o.default.DCListItemView),h=u.extend({initialize:function(e){u.prototype.initialize.call(this,e)},toString:function(){return"DCListItemEdit("+(this.model?""+this.model:"(no model)")+")"}}),f=o.default.DCEListItemView,p=f.extend({initialize:function(e){f.prototype.initialize.call(this,e)},toString:function(){return"DCEListItemEdit("+(this.model?""+this.model:"(no 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RegExp(this.filters[1])]),i}e=e||{},e.createPair=e.createPair||function(e){e=e||{};var t=e.listA.splice(e.indexA,1)[0],i=e.listB.splice(e.indexB,1)[0],n=e.listB.indexOf(t),s=e.listA.indexOf(i);return-1!==n&&e.listB.splice(n,1),-1!==s&&e.listA.splice(s,1),this._pair(t,i,{silent:!0})};var i=[];return e.preprocessMatch=e.preprocessMatch||function(e){var i=t.call(this);return n.extend(e,{matchTo:e.matchTo.name.replace(i[0],""),possible:e.possible.name.replace(i[1],"")})},function(t){this.debug("autopair _strategy ---------------------------"),t=t||{};var i,n=t.listA,s=t.listB,a=0,o={score:0,index:null},l=[];for(this.debug("starting list lens:",n.length,s.length),this.debug("bestMatch (starting):",JSON.stringify(o,null,"  "));a<n.length;){var r=n[a];for(o.score=0,i=0;i<s.length;i++){var d=s[i];if(this.debug(a+":"+r.name),this.debug(i+":"+d.name),n[a]!==s[i]&&(o=e.match.call(this,e.preprocessMatch.call(this,{matchTo:r,possible:d,index:i,bestMatch:o})),this.debug("bestMatch:",JSON.stringify(o,null,"  ")),1===o.score)){this.debug("breaking early due to perfect match");break}}var c=e.scoreThreshold.call(this);if(this.debug("scoreThreshold:",c),this.debug("bestMatch.score:",o.score),o.score>=c?l.push(e.createPair.call(this,{listA:n,indexA:a,listB:s,indexB:o.index})):a+=1,!n.length||!s.length)return l}return this.debug("paired:",JSON.stringify(l,null,"  ")),this.debug("autopair _strategy ---------------------------"),l}}function r(e,t){var i=e.toJSON();return b(i,{historyId:e.historyId,defaultHideSourceItems:t})}Object.defineProperty(t,"__esModule",{value:!0});var d=i(99),c=o(d),u=i(53),h=o(u),f=i(52),p=o(f),m=i(4),g=o(m),_=i(3),v=o(_);i(54);var w=e.View.extend(g.default.LoggableMixin).extend({_logNamespace:"collections",tagName:"li",className:"dataset paired",initialize:function(e){this.pair=e.pair||{}},template:n.template(['<span class="forward-dataset-name flex-column"><%- pair.forward.name %></span>','<span class="pair-name-column flex-column">','<span class="pair-name"><%- pair.name %></span>',"</span>",'<span class="reverse-dataset-name flex-column"><%- pair.reverse.name %></span>'].join("")),render:function(){this.dragStartHandler=n.bind(this._dragstart,this),this.dragEndHandler=n.bind(this._dragend,this);var e=this.$el.attr("draggable",!0).data("pair",this.pair).html(this.template({pair:this.pair})).addClass("flex-column-container").get(0);return e.addEventListener("dragstart",this.dragStartHandler,!1),e.addEventListener("dragend",this.dragEndHandler,!1),this},events:{dragover:"_sendToParent",drop:"_sendToParent"},_dragstart:function(e){e.currentTarget.style.opacity="0.4",e.originalEvent&&(e=e.originalEvent),e.dataTransfer.effectAllowed="move",e.dataTransfer.setData("text/plain",JSON.stringify(this.pair)),this.$el.parent().trigger("pair.dragstart",[this])},_dragend:function(e){e.currentTarget.style.opacity="1.0",this.$el.parent().trigger("pair.dragend",[this])},_sendToParent:function(e){this.$el.parent().trigger(e)},toString:function(){return"PairView("+this.pair.name+")"}}),y=e.View.extend(g.default.LoggableMixin).extend(p.default.CollectionCreatorMixin).extend({_logNamespace:"collections",className:"list-of-pairs-collection-creator collection-creator flex-row-container",initialize:function(e){this.metric("PairedCollectionCreator.initialize",e),e=n.defaults(e,{datasets:[],filters:this.DEFAULT_FILTERS,automaticallyPair:!0,strategy:"lcs",matchPercentage:.9,twoPassAutopairing:!0}),this.initialList=e.datasets,this.historyId=e.historyId,this.filters=this.commonFilters[e.filters]||this.commonFilters[this.DEFAULT_FILTERS],n.isArray(e.filters)&&(this.filters=e.filters),this.automaticallyPair=e.automaticallyPair,this.strategy=this.strategies[e.strategy]||this.strategies[this.DEFAULT_STRATEGY],n.isFunction(e.strategy)&&(this.strategy=e.strategy),this.matchPercentage=e.matchPercentage,this.twoPassAutopairing=e.twoPassAutopairing,this.removeExtensions=!0,this.oncancel=e.oncancel,this.oncreate=e.oncreate,this.autoscrollDist=e.autoscrollDist||24,this.unpairedPanelHidden=!1,this.pairedPanelHidden=!1,this.$dragging=null,this.blocking=!1,this._setUpCommonSettings(e),this._setUpBehaviors(),this._dataSetUp()},commonFilters:{illumina:["_1","_2"],Rs:["_R1","_R2"]},DEFAULT_FILTERS:"illumina",strategies:{simple:"autopairSimple",lcs:"autopairLCS",levenshtein:"autopairLevenshtein"},DEFAULT_STRATEGY:"lcs",_dataSetUp:function(){this.paired=[],this.unpaired=[],this.selectedIds=[],this._sortInitialList(),this._ensureIds(),this.unpaired=this.initialList.slice(0),this.automaticallyPair&&(this.autoPair(),this.once("rendered:initial",function(){this.trigger("autopair")}))},_sortInitialList:function(){this._sortDatasetList(this.initialList)},_sortDatasetList:function(e){return e.sort(function(e,t){return(0,h.default)(e.name,t.name)}),e},_ensureIds:function(){return this.initialList.forEach(function(e){e.hasOwnProperty("id")||(e.id=n.uniqueId())}),this.initialList},_splitByFilters:function(){function e(e,t){return t.test(e.name)}var t=this.filters.map(function(e){return new RegExp(e)}),i=[[],[]];return this.unpaired.forEach(function(n){t.forEach(function(t,s){e(n,t)&&i[s].push(n)})}),i},_addToUnpaired:function(e){var t=this;this.unpaired.splice(function i(n,s){if(n===s)return n;var a=Math.floor((s-n)/2)+n,o=(0,h.default)(e.name,t.unpaired[a].name);if(o<0)return i(n,a);if(o>0)return i(a+1,s);for(;t.unpaired[a]&&t.unpaired[a].name===e.name;)a++;return a}(0,this.unpaired.length),0,e)},autoPair:function(e){var t=this._splitByFilters(),i=[];return this.twoPassAutopairing&&(i=this.autopairSimple({listA:t[0],listB:t[1]}),t=this._splitByFilters()),e=e||this.strategy,t=this._splitByFilters(),i=i.concat(this[e].call(this,{listA:t[0],listB:t[1]}))},autopairSimple:l({scoreThreshold:function(){return.6},match:function(e){return e=e||{},e.matchTo===e.possible?{index:e.index,score:1}:e.bestMatch}}),autopairLevenshtein:l({scoreThreshold:function(){return this.matchPercentage},match:function(e){e=e||{};var t=(0,c.default)(e.matchTo,e.possible),i=1-t/Math.max(e.matchTo.length,e.possible.length);return i>e.bestMatch.score?{index:e.index,score:i}:e.bestMatch}}),autopairLCS:l({scoreThreshold:function(){return this.matchPercentage},match:function(e){e=e||{};var t=this._naiveStartingAndEndingLCS(e.matchTo,e.possible).length,i=t/Math.max(e.matchTo.length,e.possible.length);return i>e.bestMatch.score?{index:e.index,score:i}:e.bestMatch}}),_naiveStartingAndEndingLCS:function(e,t){for(var i="",n="",s=0,a=0;s<e.length&&s<t.length&&e[s]===t[s];)i+=e[s],s+=1;if(s===e.length)return e;if(s===t.length)return t;for(s=e.length-1,a=t.length-1;s>=0&&a>=0&&e[s]===t[a];)n=[e[s],n].join(""),s-=1,a-=1;return i+n},_pair:function(e,t,i){i=i||{},this.debug("_pair:",e,t);var s=this._createPair(e,t,i.name);return this.paired.push(s),this.unpaired=n.without(this.unpaired,e,t),i.silent||this.trigger("pair:new",s),s},_createPair:function(e,t,i){if(!e||!t||e===t)throw new Error("Bad pairing: "+[JSON.stringify(e),JSON.stringify(t)]);return i=i||this._guessNameForPair(e,t),{forward:e,name:i,reverse:t}},_guessNameForPair:function(e,t,i){i=void 0!==i?i:this.removeExtensions;var n=e.name,s=t.name,a=this._naiveStartingAndEndingLCS(n.replace(new RegExp(this.filters[0]),""),s.replace(new RegExp(this.filters[1]),""));if(i){var o=a.lastIndexOf(".");if(o>0){var l=a.slice(o,a.length);a=a.replace(l,""),n=n.replace(l,""),s=s.replace(l,"")}}return a||n+" & "+s},_unpair:function(e,t){if(t=t||{},!e)throw new Error("Bad pair: "+JSON.stringify(e));return this.paired=n.without(this.paired,e),this._addToUnpaired(e.forward),this._addToUnpaired(e.reverse),t.silent||this.trigger("pair:unpair",[e]),e},unpairAll:function(){for(var e=[];this.paired.length;)e.push(this._unpair(this.paired[0],{silent:!0}));this.trigger("pair:unpair",e)},_pairToJSON:function(e,t){return t=t||"hda",{collection_type:"paired",src:"new_collection",name:e.name,element_identifiers:[{name:"forward",id:e.forward.id,src:t},{name:"reverse",id:e.reverse.id,src:t}]}},createList:function(e){var t=this,i=Galaxy.root+"api/histories/"+this.historyId+"/contents/dataset_collections",a={type:"dataset_collection",collection_type:"list:paired",hide_source_items:t.hideOriginals||!1,name:n.escape(e||t.$(".collection-name").val()),element_identifiers:t.paired.map(function(e){return t._pairToJSON(e)})};return t.blocking=!0,s.ajax(i,{type:"POST",contentType:"application/json",dataType:"json",data:JSON.stringify(a)}).always(function(){t.blocking=!1}).fail(function(e,i,n){t._ajaxErrHandler(e,i,n)}).done(function(e,i,n){t.trigger("collection:created",e,i,n),t.metric("collection:created",e),"function"==typeof t.oncreate&&t.oncreate.call(this,e,i,n)})},_ajaxErrHandler:function(e,t,i){this.error(e,t,i);var n=this,s=(0,v.default)("An error occurred while creating this collection");e&&(0===e.readyState&&0===e.status?s+=": "+(0,v.default)("Galaxy could not be reached and may be updating.")+(0,v.default)(" Try again in a few minutes."):e.responseJSON?s+="<br /><pre>"+JSON.stringify(e.responseJSON)+"</pre>":s+=": "+i),n._showAlert(s,"alert-danger")},render:function(e,t){return this.$el.empty().html(this.templates.main()),this._renderHeader(e),this._renderMiddle(e),this._renderFooter(e),this._addPluginComponents(),this.trigger("rendered",this),this},_renderHeader:function(e,t){var i=this.$(".header").empty().html(this.templates.header()).find(".help-content").prepend(a(this.templates.helpContent()));return this._renderFilters(),i},_renderFilters:function(){return this.$(".forward-column .column-header input").val(this.filters[0]).add(this.$(".reverse-column .column-header input").val(this.filters[1]))},_renderMiddle:function(e,t){var i=this.$(".middle").empty().html(this.templates.middle());return this.unpairedPanelHidden?this.$(".unpaired-columns").hide():this.pairedPanelHidden&&this.$(".paired-columns").hide(),this._renderUnpaired(),this._renderPaired(),i},_renderUnpaired:function(e,t){var i,n,s=this,a=[],o=this._splitByFilters();return this.$(".forward-column .title").text([o[0].length,(0,v.default)("unpaired forward")].join(" ")),this.$(".forward-column .unpaired-info").text(this._renderUnpairedDisplayStr(this.unpaired.length-o[0].length)),this.$(".reverse-column .title").text([o[1].length,(0,v.default)("unpaired reverse")].join(" ")),this.$(".reverse-column .unpaired-info").text(this._renderUnpairedDisplayStr(this.unpaired.length-o[1].length)),this.$(".unpaired-columns .column-datasets").empty(),this.$(".autopair-link").toggle(0!==this.unpaired.length),0===this.unpaired.length?void this._renderUnpairedEmpty():(n=o[1].map(function(e,t){return void 0!==o[0][t]&&o[0][t]!==e&&a.push(s._renderPairButton()),s._renderUnpairedDataset(e)}),i=o[0].map(function(e){return s._renderUnpairedDataset(e)}),i.length||n.length?(this.$(".unpaired-columns .forward-column .column-datasets").append(i).add(this.$(".unpaired-columns .paired-column .column-datasets").append(a)).add(this.$(".unpaired-columns .reverse-column .column-datasets").append(n)),void this._adjUnpairedOnScrollbar()):void this._renderUnpairedNotShown())},_renderUnpairedDisplayStr:function(e){return["(",e," ",(0,v.default)("filtered out"),")"].join("")},_renderUnpairedDataset:function(e){return a("<li/>").attr("id","dataset-"+e.id).addClass("dataset unpaired").attr("draggable",!0).addClass(e.selected?"selected":"").append(a("<span/>").addClass("dataset-name").text(e.name)).data("dataset",e)},_renderPairButton:function(){return a("<li/>").addClass("dataset unpaired").append(a("<span/>").addClass("dataset-name").text((0,v.default)("Pair these datasets")))},_renderUnpairedEmpty:function(){var e=a('<div class="empty-message"></div>').text("("+(0,v.default)("no remaining unpaired datasets")+")");return this.$(".unpaired-columns .paired-column .column-datasets").empty().prepend(e),e},_renderUnpairedNotShown:function(){var e=a('<div class="empty-message"></div>').text("("+(0,v.default)("no datasets were found matching the current filters")+")");return this.$(".unpaired-columns .paired-column .column-datasets").empty().prepend(e),e},_adjUnpairedOnScrollbar:function(){var e=this.$(".unpaired-columns").last(),t=this.$(".unpaired-columns .reverse-column .dataset").first();if(t.length){var i=e.offset().left+e.outerWidth(),n=t.offset().left+t.outerWidth(),s=Math.floor(i)-Math.floor(n);this.$(".unpaired-columns .forward-column").css("margin-left",s>0?s:0)}},_renderPaired:function(e,t){if(this.$(".paired-column-title .title").text([this.paired.length,(0,v.default)("paired")].join(" ")),this.$(".unpair-all-link").toggle(0!==this.paired.length),0===this.paired.length)return void this._renderPairedEmpty();this.$(".remove-extensions-link").show(),this.$(".paired-columns .column-datasets").empty();var i=this;this.paired.forEach(function(e,t){var n=new w({pair:e});i.$(".paired-columns .column-datasets").append(n.render().$el).append(['<button class="unpair-btn">','<span class="fa fa-unlink" title="',(0,v.default)("Unpair"),'"></span>',"</button>"].join(""))})},_renderPairedEmpty:function(){var e=a('<div class="empty-message"></div>').text("("+(0,v.default)("no paired datasets yet")+")");return this.$(".paired-columns .column-datasets").empty().prepend(e),e},footerSettings:{".hide-originals":"hideOriginals",".remove-extensions":"removeExtensions"},_addPluginComponents:function(){this._chooseFiltersPopover(".choose-filters-link"),this.$(".help-content i").hoverhighlight(".collection-creator","rgba( 64, 255, 255, 1.0 )")},_chooseFiltersPopover:function(e){function t(e,t){return['<button class="filter-choice btn" ','data-forward="',e,'" data-reverse="',t,'">',(0,v.default)("Forward"),": ",e,", ",(0,v.default)("Reverse"),": ",t,"</button>"].join("")}var i=a(n.template(['<div class="choose-filters">','<div class="help">',(0,v.default)("Choose from the following filters to change which unpaired reads are shown in the display"),":</div>",n.values(this.commonFilters).map(function(e){return t(e[0],e[1])}).join(""),"</div>"].join(""))({}));return this.$(e).popover({container:".collection-creator",placement:"bottom",html:!0,content:i})},_validationWarning:function(e,t){"name"===e&&(e=this.$(".collection-name").add(this.$(".collection-name-prompt")),this.$(".collection-name").focus().select()),t?(e=e||this.$(".validation-warning"),e.removeClass("validation-warning")):e.addClass("validation-warning")},_setUpBehaviors:function(){return this.once("rendered",function(){this.trigger("rendered:initial",this)}),this.on("pair:new",function(){this._renderUnpaired(),this._renderPaired(),this.$(".paired-columns").scrollTop(8e6)}),this.on("pair:unpair",function(e){this._renderUnpaired(),this._renderPaired(),this.splitView()}),this.on("filter-change",function(){this.filters=[this.$(".forward-unpaired-filter input").val(),this.$(".reverse-unpaired-filter input").val()],this.metric("filter-change",this.filters),this._renderFilters(),this._renderUnpaired()}),this.on("autopair",function(){this._renderUnpaired(),this._renderPaired();var e,t=null;this.paired.length?(t="alert-success",e=this.paired.length+" "+(0,v.default)("pairs created"),this.unpaired.length||(e+=": "+(0,v.default)("all datasets have been successfully paired"),this.hideUnpaired(),this.$(".collection-name").focus())):e=(0,v.default)(["Could not automatically create any pairs from the given dataset names.","You may want to choose or enter different filters and try auto-pairing again.","Close this message using the X on the right to view more help."].join(" ")),this._showAlert(e,t)}),this},events:{"click .more-help":"_clickMoreHelp","click .less-help":"_clickLessHelp","click .main-help":"_toggleHelp","click .header .alert button":"_hideAlert","click .forward-column .column-title":"_clickShowOnlyUnpaired","click .reverse-column .column-title":"_clickShowOnlyUnpaired","click .unpair-all-link":"_clickUnpairAll","change .forward-unpaired-filter input":function(e){this.trigger("filter-change")},"focus .forward-unpaired-filter input":function(e){a(e.currentTarget).select()},"click .autopair-link":"_clickAutopair","click .choose-filters .filter-choice":"_clickFilterChoice","click .clear-filters-link":"_clearFilters","change .reverse-unpaired-filter input":function(e){this.trigger("filter-change")},"focus .reverse-unpaired-filter input":function(e){a(e.currentTarget).select()},"click .forward-column .dataset.unpaired":"_clickUnpairedDataset","click .reverse-column .dataset.unpaired":"_clickUnpairedDataset","click .paired-column .dataset.unpaired":"_clickPairRow","click .unpaired-columns":"clearSelectedUnpaired","mousedown .unpaired-columns .dataset":"_mousedownUnpaired","click .paired-column-title":"_clickShowOnlyPaired","mousedown .flexible-partition-drag":"_startPartitionDrag","click .paired-columns .dataset.paired":"selectPair","click .paired-columns":"clearSelectedPaired","click .paired-columns .pair-name":"_clickPairName","click .unpair-btn":"_clickUnpair","dragover .paired-columns .column-datasets":"_dragoverPairedColumns","drop .paired-columns .column-datasets":"_dropPairedColumns","pair.dragstart .paired-columns .column-datasets":"_pairDragstart","pair.dragend   .paired-columns .column-datasets":"_pairDragend","change .remove-extensions":function(e){this.toggleExtensions()},"change .collection-name":"_changeName","keydown .collection-name":"_nameCheckForEnter","change .hide-originals":"_changeHideOriginals","click .cancel-create":"_cancelCreate","click .create-collection":"_clickCreate"},_clickShowOnlyUnpaired:function(e){this.$(".paired-columns").is(":visible")?this.hidePaired():this.splitView()},_clickShowOnlyPaired:function(e){this.$(".unpaired-columns").is(":visible")?this.hideUnpaired():this.splitView()},hideUnpaired:function(e,t){this.unpairedPanelHidden=!0,this.pairedPanelHidden=!1,this._renderMiddle(e,t)},hidePaired:function(e,t){this.unpairedPanelHidden=!1,this.pairedPanelHidden=!0,this._renderMiddle(e,t)},splitView:function(e,t){return this.unpairedPanelHidden=this.pairedPanelHidden=!1,this._renderMiddle(e,t),this},_clickUnpairAll:function(e){this.metric("unpairAll"),this.unpairAll()},_clickAutopair:function(e){var t=this.autoPair();this.metric("autopair",t.length,this.unpaired.length),this.trigger("autopair")},_clickFilterChoice:function(e){var t=a(e.currentTarget);this.$(".forward-unpaired-filter input").val(t.data("forward")),this.$(".reverse-unpaired-filter input").val(t.data("reverse")),this._hideChooseFilters(),this.trigger("filter-change")},_hideChooseFilters:function(){this.$(".choose-filters-link").popover("hide"),this.$(".popover").css("display","none")},_clearFilters:function(e){this.$(".forward-unpaired-filter input").val(""),this.$(".reverse-unpaired-filter input").val(""),this.trigger("filter-change")},_clickUnpairedDataset:function(e){return e.stopPropagation(),this.toggleSelectUnpaired(a(e.currentTarget))},toggleSelectUnpaired:function(e,t){t=t||{};var i=e.data("dataset"),n=void 0!==t.force?t.force:!e.hasClass("selected");return e.length&&void 0!==i?(n?(e.addClass("selected"),t.waitToPair||this.pairAllSelected()):e.removeClass("selected"),e):e},pairAllSelected:function(e){e=e||{};var t=this,i=[],n=[],s=[];return t.$(".unpaired-columns .forward-column .dataset.selected").each(function(){i.push(a(this).data("dataset"))}),t.$(".unpaired-columns .reverse-column .dataset.selected").each(function(){n.push(a(this).data("dataset"))}),i.length=n.length=Math.min(i.length,n.length),i.forEach(function(e,i){try{s.push(t._pair(e,n[i],{silent:!0}))}catch(e){t.error(e)}}),s.length&&!e.silent&&this.trigger("pair:new",s),s},clearSelectedUnpaired:function(){this.$(".unpaired-columns .dataset.selected").removeClass("selected")},_mousedownUnpaired:function(e){if(e.shiftKey){var t=this,i=a(e.target).addClass("selected"),n=function(e){t.$(e.target).filter(".dataset").addClass("selected")};i.parent().on("mousemove",n),a(document).one("mouseup",function(e){i.parent().off("mousemove",n),t.pairAllSelected()})}},_clickPairRow:function(e){var t=a(e.currentTarget).index(),i=a(".unpaired-columns .forward-column .dataset").eq(t).data("dataset"),n=a(".unpaired-columns .reverse-column .dataset").eq(t).data("dataset");this._pair(i,n)},_startPartitionDrag:function(e){function t(e){n.$(".flexible-partition-drag").css("color",""),a("body").css("cursor","").unbind("mousemove",i)}function i(e){var t=e.pageY-s;n.adjPartition(t)||a("body").trigger("mouseup"),n._adjUnpairedOnScrollbar(),s+=t}var n=this,s=e.pageY;a("body").css("cursor","ns-resize"),n.$(".flexible-partition-drag").css("color","black"),a("body").mousemove(i),a("body").one("mouseup",t)},adjPartition:function(e){var t=this.$(".unpaired-columns"),i=this.$(".paired-columns"),n=parseInt(t.css("height"),10),s=parseInt(i.css("height"),10);n=Math.max(10,n+e),s-=e;var a=e<0;if(a){if(this.unpairedPanelHidden)return!1;if(n<=10)return this.hideUnpaired(),!1}else this.unpairedPanelHidden&&(t.show(),this.unpairedPanelHidden=!1);if(a)this.pairedPanelHidden&&(i.show(),this.pairedPanelHidden=!1);else{if(this.pairedPanelHidden)return!1;if(s<=15)return this.hidePaired(),!1}return t.css({height:n+"px",flex:"0 0 auto"}),!0},selectPair:function(e){e.stopPropagation(),a(e.currentTarget).toggleClass("selected")},clearSelectedPaired:function(e){this.$(".paired-columns .dataset.selected").removeClass("selected")},_clickPairName:function(e){e.stopPropagation();var t=a(e.currentTarget),i=t.parent().parent(),n=i.index(".dataset.paired"),s=this.paired[n],o=prompt("Enter a new name for the pair:",s.name);o&&(s.name=o,s.customizedName=!0,t.text(s.name))},_clickUnpair:function(e){var t=Math.floor(a(e.currentTarget).index(".unpair-btn"));this._unpair(this.paired[t])},_dragoverPairedColumns:function(e){e.preventDefault();var t=this.$(".paired-columns .column-datasets");this._checkForAutoscroll(t,e.originalEvent.clientY);var i=this._getNearestPairedDatasetLi(e.originalEvent.clientY);a(".element-drop-placeholder").remove();var n=a('<div class="element-drop-placeholder"></div>');i.length?i.before(n):t.append(n)},_checkForAutoscroll:function(e,t){var i=e.offset(),n=e.scrollTop(),s=t-i.top,a=i.top+e.outerHeight()-t;s>=0&&s<this.autoscrollDist?e.scrollTop(n-2):a>=0&&a<this.autoscrollDist&&e.scrollTop(n+2)},_getNearestPairedDatasetLi:function(e){for(var t=this.$(".paired-columns .column-datasets li").toArray(),i=0;i<t.length;i++){var n=a(t[i]),s=n.offset().top,o=Math.floor(n.outerHeight()/2)+4;if(s+o>e&&s-o<e)return n}return a()},_dropPairedColumns:function(e){e.preventDefault(),e.dataTransfer.dropEffect="move";var 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file"),onclick:function(){t._eventFtp()},icon:"fa fa-folder-open-o"}),this.btnCreate=new x.default.Button({id:"btn-new",title:"Paste/Fetch data",onclick:function(){t._eventCreate()},icon:"fa fa-edit"}),this.btnStart=new x.default.Button({id:"btn-start",title:(0,l.default)("Start"),onclick:function(){t._eventStart()}}),this.btnStop=new x.default.Button({id:"btn-stop",title:(0,l.default)("Pause"),onclick:function(){t._eventStop()}}),this.btnReset=new x.default.Button({id:"btn-reset",title:(0,l.default)("Reset"),onclick:function(){t._eventReset()}}),this.btnClose=new x.default.Button({id:"btn-close",title:(0,l.default)("Close"),onclick:function(){t.app.modal.hide()}}),n.each([this.btnLocal,this.btnFtp,this.btnCreate,this.btnStop,this.btnReset,this.btnStart,this.btnClose],function(e){t.$(".upload-buttons").prepend(e.$el)}),this.uploadbox=this.$uploadbox.uploadbox({url:this.app.options.nginx_upload_path,announce:function(e,i){t._eventAnnounce(e,i)},initialize:function(e){return t.app.toData([t.collection.get(e)],t.history_id)},progress:function(e,i){t._eventProgress(e,i)},success:function(e,i){t._eventSuccess(e,i)},error:function(e,i){t._eventError(e,i)},complete:function(){t._eventComplete()},ondragover:function(){t.$uploadbox.addClass("highlight")},ondragleave:function(){t.$uploadbox.removeClass("highlight")}}),this.ftp=new v.default.View({title:(0,l.default)("FTP files"),container:this.btnFtp.$el}),this.select_extension=new y.default.View({css:"upload-footer-selection",container:this.$(".upload-footer-extension"),data:n.filter(this.list_extensions,function(e){return!e.composite_files}),value:this.options.default_extension,onchange:function(e){t._changeExtension(e)}}),this.$(".upload-footer-extension-info").on("click",function(e){new g.default({$el:s(e.target),title:t.select_extension.text(),extension:t.select_extension.value(),list:t.list_extensions,placement:"top"})}).on("mousedown",function(e){e.preventDefault()}),this.select_genome=new y.default.View({css:"upload-footer-selection",container:this.$(".upload-footer-genome"),data:this.list_genomes,value:this.options.default_genome,onchange:function(e){t._changeGenome(e)}}),this.loader=new C.default({$container:this.$uploadbox,collection:this.collection,new_content:function(e){var i=new h.default(t,{model:e});return t.$uploadtable.find("> tbody:first").append(i.$el),i.render(),i}}),this.collection.on("remove",function(e){t._eventRemove(e)}),this.render()},render:function(){var e="";e=0==this.counter.announce?this.uploadbox.compatible()?"&nbsp;":"Browser does not support Drag & Drop. Try Firefox 4+, Chrome 7+, IE 10+, Opera 12+ or Safari 6+.":0==this.counter.running?"You added "+this.counter.announce+" file(s) to the queue. Add more files or click 'Start' to proceed.":"Please wait..."+this.counter.announce+" out of "+this.counter.running+" remaining.",this.$(".upload-top-info").html(e);var t=0==this.counter.running&&this.counter.announce+this.counter.success+this.counter.error>0,i=0==this.counter.running&&this.counter.announce>0,n=0==this.counter.running,s=this.counter.announce+this.counter.success+this.counter.error>0;this.btnReset[t?"enable":"disable"](),this.btnStart[i?"enable":"disable"](),this.btnStart.$el[i?"addClass":"removeClass"]("btn-primary"),this.btnStop[this.counter.running>0?"enable":"disable"](),this.btnLocal[n?"enable":"disable"](),this.btnFtp[n?"enable":"disable"](),this.btnCreate[n?"enable":"disable"](),this.btnFtp.$el[this.ftp_upload_site?"show":"hide"](),this.$(".upload-table")[s?"show":"hide"](),this.$(".upload-helper")[s?"hide":"show"]()},_eventAnnounce:function(e,t){this.counter.announce++;var i=new c.default.Model({id:e,file_name:t.name,file_size:t.size,file_mode:t.mode||"local",file_path:t.path,file_data:t});this.render(),this.collection.add(i)},_eventProgress:function(e,t){var i=this.collection.get(e);i.set("percentage",t),this.ui_button.model.set("percentage",this._uploadPercentage(t,i.get("file_size")))},_eventSuccess:function(e,t){var i=this.collection.get(e);i.set({percentage:100,status:"success"}),this.ui_button.model.set("percentage",this._uploadPercentage(100,i.get("file_size"))),this.upload_completed+=100*i.get("file_size"),this.counter.announce--,this.counter.success++,this.render(),Galaxy.currHistoryPanel.refreshContents()},_eventError:function(e,t){var i=this.collection.get(e);i.set({percentage:100,status:"error",info:t}),this.ui_button.model.set({percentage:this._uploadPercentage(100,i.get("file_size")),status:"danger"}),this.upload_completed+=100*i.get("file_size"),this.counter.announce--,this.counter.error++,this.render()},_eventComplete:function(){this.collection.each(function(e){"queued"==e.get("status")&&e.set("status","init")}),this.counter.running=0,this.render()},_eventRemove:function(e){var t=e.get("status");"success"==t?this.counter.success--:"error"==t?this.counter.error--:this.counter.announce--,this.uploadbox.remove(e.id),this.render()},_eventFtp:function(){if(this.ftp.visible)this.ftp.hide();else{this.ftp.empty();var e=this;this.ftp.append(new p.default({collection:this.collection,ftp_upload_site:this.ftp_upload_site,onadd:function(t){return e.uploadbox.add([{mode:"ftp",name:t.path,size:t.size,path:t.path}])},onremove:function(t){e.collection.remove(t)}}).$el),this.ftp.show()}},_eventCreate:function(){this.uploadbox.add([{name:"New File",size:0,mode:"new"}])},_eventStart:function(){if(0!=this.counter.announce&&0==this.counter.running){var e=this;this.upload_size=0,this.upload_completed=0,this.collection.each(function(t){"init"==t.get("status")&&(t.set("status","queued"),e.upload_size+=t.get("file_size"))}),this.ui_button.model.set({percentage:0,status:"success"}),this.counter.running=this.counter.announce,this.history_id=this.app.currentHistory(),this._uploadFtp(),this.uploadbox.start(),this.render()}},_eventStop:function(){this.counter.running>0&&(this.ui_button.model.set("status","info"),s(".upload-top-info").html("Queue will pause after completing the current file..."),this.uploadbox.stop())},_eventReset:function(){if(0==this.counter.running){this.collection.reset(),this.counter.reset(),this.uploadbox.reset(),this.select_extension.value(this.options.default_extension),this.select_genome.value(this.options.default_genome),this.ui_button.model.set("percentage",0),this.render()}},_changeExtension:function(e,t){var i=this;this.collection.each(function(n){"init"!=n.get("status")||n.get("extension")!=i.options.default_extension&&t||n.set("extension",e)})},_changeGenome:function(e,t){var i=this;this.collection.each(function(n){"init"!=n.get("status")||n.get("genome")!=i.options.default_genome&&t||n.set("genome",e)})},_uploadFtp:function(){var e=this,t=[];this.collection.each(function(i){"queued"==i.get("status")&&"ftp"==i.get("file_mode")&&(e.uploadbox.remove(i.id),t.push(i))}),t.length>0&&s.uploadpost({data:this.app.toData(t),url:this.app.options.nginx_upload_path,success:function(i){n.each(t,function(t){e._eventSuccess(t.id)})},error:function(i){n.each(t,function(t){e._eventError(t.id,i)})}})},_uploadPercentage:function(e,t){return(this.upload_completed+e*t)/this.upload_size},_template:function(){return'<div class="upload-view-default"><div class="upload-top"><h6 class="upload-top-info"/></div><div class="upload-box"><div class="upload-helper"><i class="fa fa-files-o"/>Drop files here</div><table class="upload-table ui-table-striped" style="display: none;"><thead><tr><th>Name</th><th>Size</th><th>Type</th><th>Genome</th><th>Settings</th><th>Status</th><th/></tr></thead><tbody/></table></div><div class="upload-footer"><span class="upload-footer-title">Type (set all):</span><span class="upload-footer-extension"/><span class="upload-footer-extension-info upload-icon-button fa fa-search"/> <span class="upload-footer-title">Genome (set all):</span><span class="upload-footer-genome"/></div><div class="upload-buttons"/></div>'}})}).call(t,i(2),i(1),i(0))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(3),l=a(o),r=i(5),d=a(r),c=i(49),u=(a(c),i(88)),h=a(u),f=i(26),p=a(f),m=i(12),g=a(m);t.default=e.View.extend({status_classes:{init:"upload-icon-button fa fa-trash-o",queued:"upload-icon fa fa-spinner fa-spin",running:"upload-icon fa fa-spinner fa-spin",success:"upload-icon-button fa fa-check",error:"upload-icon-button fa fa-exclamation-triangle"},initialize:function(e,t){var i=this;this.app=e,this.model=t.model,this.setElement(this._template(t.model)),this.$mode=this.$(".upload-mode"),this.$title=this.$(".upload-title"),this.$text=this.$(".upload-text"),this.$size=this.$(".upload-size"),this.$info_text=this.$(".upload-info-text"),this.$info_progress=this.$(".upload-info-progress"),this.$text_content=this.$(".upload-text-content"),this.$settings=this.$(".upload-settings"),this.$symbol=this.$(".upload-symbol"),this.$progress_bar=this.$(".upload-progress-bar"),this.$percentage=this.$(".upload-percentage"),this.settings=new p.default.View({title:(0,l.default)("Upload configuration"),container:this.$(".upload-settings"),placement:"bottom"});var s=this.app.select_genome.value(),a=this.app.select_extension.value();this.select_genome=new g.default.View({css:"upload-genome",data:i.app.list_genomes,container:this.$(".upload-genome"),value:s,onchange:function(e){i.model.set("genome",e)}}),this.select_extension=new g.default.View({css:"upload-extension",data:i.app.list_extensions,container:this.$(".upload-extension"),value:a,onchange:function(e){i.model.set("extension",e)}}),this.model.set({genome:s,extension:a}),this.$symbol.on("click",function(){i._removeRow()}),this.$(".upload-extension-info").on("click",function(e){i.app.showExtensionInfo({$el:n(e.target),title:i.select_extension.text(),extension:i.select_extension.value()})}).on("mousedown",function(e){e.preventDefault()}),this.$settings.on("click",function(e){i._showSettings()}).on("mousedown",function(e){e.preventDefault()}),this.$text_content.on("change input",function(e){i.model.set({url_paste:n(e.target).val(),file_size:n(e.target).val().length})}),this.listenTo(this.model,"change:percentage",function(){i._refreshPercentage()}),this.listenTo(this.model,"change:status",function(){i._refreshStatus()}),this.listenTo(this.model,"change:info",function(){i._refreshInfo()}),this.listenTo(this.model,"change:genome",function(){i._refreshGenome()}),this.listenTo(this.model,"change:extension",function(){i._refreshExtension()}),this.listenTo(this.model,"change:file_size",function(){i._refreshFileSize()})},render:function(){this._refreshType(),this._refreshPercentage(),this._refreshStatus(),this._refreshInfo(),this._refreshGenome(),this._refreshExtension(),this._refreshFileSize()},remove:function(){this.select_genome.remove(),this.select_extension.remove(),e.View.prototype.remove.apply(this)},_refreshType:function(){var e=this.model.attributes;this.$title.html(s.escape(e.file_name)),this.$size.html(d.default.bytesToString(e.file_size)),this.$mode.removeClass().addClass("upload-mode").addClass("text-primary"),"new"==e.file_mode?(this.$text.css({width:this.$el.width()-16+"px",top:this.$el.height()-8+"px"}).show(),this.$el.height(this.$el.height()-8+this.$text.height()+16),this.$mode.addClass("fa fa-edit")):"local"==e.file_mode?this.$mode.addClass("fa fa-laptop"):"ftp"==e.file_mode&&this.$mode.addClass("fa fa-folder-open-o")},_refreshExtension:function(){this.select_extension.value(this.model.get("extension"))},_refreshGenome:function(){this.select_genome.value(this.model.get("genome"))},_refreshInfo:function(){var e=this.model.get("info");e?this.$info_text.html("<strong>Failed: </strong>"+e).show():this.$info_text.hide()},_refreshPercentage:function(){var e=parseInt(this.model.get("percentage"));this.$progress_bar.css({width:e+"%"}),this.$percentage.html(100!=e?e+"%":"Adding to history...")},_refreshStatus:function(){var e=this.model.get("status");this.$symbol.removeClass().addClass("upload-symbol").addClass(this.status_classes[e]),this.model.set("enabled","init"==e);var t=this.model.get("enabled");this.$text_content.attr("disabled",!t),t?(this.select_genome.enable(),this.select_extension.enable()):(this.select_genome.disable(),this.select_extension.disable()),"success"==e&&(this.$el.addClass("success"),this.$percentage.html("100%")),"error"==e&&(this.$el.addClass("danger"),this.$info_progress.hide())},_refreshFileSize:function(){this.$size.html(d.default.bytesToString(this.model.get("file_size")))},_removeRow:function(){-1!==["init","success","error"].indexOf(this.model.get("status"))&&this.app.collection.remove(this.model)},_showSettings:function(){this.settings.visible?this.settings.hide():(this.settings.empty(),this.settings.append(new h.default(this).$el),this.settings.show())},_template:function(e){return'<tr id="upload-row-'+e.id+'" class="upload-row"><td><div class="upload-text-column"><div class="upload-mode"/><div class="upload-title"/><div class="upload-text"><div class="upload-text-info">You can tell Galaxy to download data from web by entering URL in this box (one per line). You can also directly paste the contents of a file.</div><textarea class="upload-text-content form-control"/></div></div></td><td><div class="upload-size"/></td><td><div class="upload-extension" style="float: left;"/>&nbsp;&nbsp<div class="upload-extension-info upload-icon-button fa fa-search"/></td><td><div class="upload-genome"/></td><td><div class="upload-settings upload-icon-button fa fa-gear"/></td><td><div class="upload-info"><div class="upload-info-text"/><div class="upload-info-progress progress"><div class="upload-progress-bar progress-bar progress-bar-success"/><div class="upload-percentage">0%</div></div></div></td><td><div class="upload-symbol '+this.status_classes.init+'"/></td></tr>'}})}).call(t,i(2),i(0),i(1))},function(e,t,i){"use strict";(function(e,i,n){Object.defineProperty(t,"__esModule",{value:!0}),t.default=e.View.extend({initialize:function(e){this.$container=e.$container,this.collection=e.collection,this.new_content=e.new_content,this.max=e.max||50,this.content_list={},this.$message=i("<div/>").addClass("ui-limitloader").append("...only the first "+this.max+" entries are visible."),this.$container.append(this.$message),this.listenTo(this.collection,"reset",this._reset,this),this.listenTo(this.collection,"add",this._refresh,this),this.listenTo(this.collection,"remove",this._remove,this)},_done:function(){var e=n.size(this.content_list)>this.max;return this.$message[e?"show":"hide"](),e},_reset:function(){n.each(this.content_list,function(e){e.remove()}),this.content_list={},this.$message.hide()},_remove:function(e){var t=e.id,i=this.content_list[t];i&&(i.remove(),delete this.content_list[t]),this._refresh()},_refresh:function(){if(!this._done())for(var e in this.collection.models){var t=this.collection.models[e];this.content_list[t.id];if(!this.content_list[t.id]){var i=this.new_content(t);if(this.content_list[t.id]=i,this._done())break}}}})}).call(t,i(2),i(0),i(1))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(3),l=a(o),r=i(5),d=(a(r),i(49)),c=a(d),u=i(259),h=a(u),f=i(90),p=a(f),m=i(26),g=(a(m),i(12)),_=a(g),v=i(6),w=a(v);t.default=e.View.extend({collection:new c.default.Collection,initialize:function(e){var t=this;this.app=e,this.options=e.options,this.list_extensions=e.list_extensions,this.list_genomes=e.list_genomes,this.ftp_upload_site=e.currentFtp(),this.setElement(this._template()),this.btnStart=new w.default.Button({title:(0,l.default)("Start"),onclick:function(){t._eventStart()}}),this.btnClose=new w.default.Button({title:(0,l.default)("Close"),onclick:function(){t.app.modal.hide()}}),n.each([this.btnStart,this.btnClose],function(e){t.$(".upload-buttons").prepend(e.$el)}),this.select_extension=new _.default.View({css:"upload-footer-selection",container:this.$(".upload-footer-extension"),data:n.filter(this.list_extensions,function(e){return e.composite_files}),onchange:function(e){t.collection.reset();var i=n.findWhere(t.list_extensions,{id:e});i&&i.composite_files&&n.each(i.composite_files,function(e){t.collection.add({id:t.collection.size(),file_desc:e.description||e.name})})}}),this.$(".upload-footer-extension-info").on("click",function(e){new p.default({$el:s(e.target),title:t.select_extension.text(),extension:t.select_extension.value(),list:t.list_extensions,placement:"top"})}).on("mousedown",function(e){e.preventDefault()}),this.select_genome=new _.default.View({css:"upload-footer-selection",container:this.$(".upload-footer-genome"),data:this.list_genomes,value:this.options.default_genome}),this.listenTo(this.collection,"add",function(e){t._eventAnnounce(e)}),this.listenTo(this.collection,"change add",function(){t.render()}),this.select_extension.options.onchange(this.select_extension.value()),this.render()},render:function(){var e=this.collection.first();e&&"running"==e.get("status")?(this.select_genome.disable(),this.select_extension.disable()):(this.select_genome.enable(),this.select_extension.enable()),this.collection.where({status:"ready"}).length==this.collection.length&&this.collection.length>0?(this.btnStart.enable(),this.btnStart.$el.addClass("btn-primary")):(this.btnStart.disable(),this.btnStart.$el.removeClass("btn-primary")),this.$(".upload-table")[this.collection.length>0?"show":"hide"]()},_eventAnnounce:function(e){var t=new h.default(this,{model:e});this.$(".upload-table > tbody:first").append(t.$el),this.$(".upload-table")[this.collection.length>0?"show":"hide"](),t.render()},_eventStart:function(){var e=this;this.collection.each(function(t){t.set({genome:e.select_genome.value(),extension:e.select_extension.value()})}),s.uploadpost({url:this.app.options.nginx_upload_path,data:this.app.toData(this.collection.filter()),success:function(t){e._eventSuccess(t)},error:function(t){e._eventError(t)},progress:function(t){e._eventProgress(t)}})},_eventProgress:function(e){this.collection.each(function(t){t.set("percentage",e)})},_eventSuccess:function(e){this.collection.each(function(e){e.set("status","success")}),Galaxy.currHistoryPanel.refreshContents()},_eventError:function(e){this.collection.each(function(t){t.set({status:"error",info:e})})},_template:function(){return'<div class="upload-view-composite"><div class="upload-top"><h6 class="upload-top-info"/></div><div class="upload-box"><table class="upload-table ui-table-striped" style="display: none;"><thead><tr><th/><th/><th>Description</th><th>Name</th><th>Size</th><th>Settings</th><th>Status</th></tr></thead><tbody/></table></div><div class="upload-footer"><span class="upload-footer-title">Composite Type:</span><span class="upload-footer-extension"/><span class="upload-footer-extension-info upload-icon-button fa fa-search"/> <span class="upload-footer-title">Genome/Build:</span><span class="upload-footer-genome"/></div><div class="upload-buttons"/></div>'}})}).call(t,i(2),i(1),i(0))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(3),l=a(o),r=i(5),d=a(r),c=i(88),u=a(c),h=i(89),f=a(h),p=i(26),m=a(p),g=i(6),_=a(g),v=i(12);a(v);i(91),t.default=e.View.extend({status_classes:{init:"upload-mode fa fa-exclamation text-primary",ready:"upload-mode fa fa-check text-success",running:"upload-mode fa fa-spinner fa-spin",success:"upload-mode fa fa-check",error:"upload-mode fa fa-exclamation-triangle"},initialize:function(e,t){var i=this;this.app=e,this.model=t.model,this.setElement(this._template()),this.$source=this.$(".upload-source"),this.$settings=this.$(".upload-settings"),this.$status=this.$(".upload-status"),this.$text=this.$(".upload-text"),this.$text_content=this.$(".upload-text-content"),this.$info_text=this.$(".upload-info-text"),this.$info_progress=this.$(".upload-info-progress"),this.$file_name=this.$(".upload-file-name"),this.$file_desc=this.$(".upload-file-desc"),this.$file_size=this.$(".upload-file-size"),this.$progress_bar=this.$(".upload-progress-bar"),this.$percentage=this.$(".upload-percentage"),this.uploadinput=this.$el.uploadinput({ondragover:function(){i.model.get("enabled")&&i.$el.addClass("warning")},ondragleave:function(){i.$el.removeClass("warning")},onchange:function(e){"running"!=i.model.get("status")&&e&&e.length>0&&(i.model.reset({file_data:e[0],file_name:e[0].name,file_size:e[0].size,file_mode:e[0].mode||"local"}),i._refreshReady())}}),this.button_menu=new _.default.ButtonMenu({icon:"fa-caret-down",title:(0,l.default)("Select"),pull:"left"}),this.$source.append(this.button_menu.$el),this.button_menu.addMenu({icon:"fa-laptop",title:(0,l.default)("Choose local file"),onclick:function(){i.uploadinput.dialog()}}),this.app.ftp_upload_site&&this.button_menu.addMenu({icon:"fa-folder-open-o",title:(0,l.default)("Choose FTP file"),onclick:function(){i._showFtp()}}),this.button_menu.addMenu({icon:"fa-edit",title:"Paste/Fetch data",onclick:function(){i.model.reset({file_mode:"new",file_name:"New File"})}}),this.ftp=new m.default.View({title:"Choose FTP file:",container:this.$source.find(".ui-button-menu"),placement:"right"}),this.settings=new m.default.View({title:(0,l.default)("Upload configuration"),container:this.$settings,placement:"bottom"}),this.$text_content.on("change input",function(e){i.model.set({url_paste:n(e.target).val(),file_size:n(e.target).val().length}),i._refreshReady()}),this.$settings.on("click",function(e){i._showSettings()}).on("mousedown",function(e){e.preventDefault()}),this.listenTo(this.model,"change:percentage",function(){i._refreshPercentage()}),this.listenTo(this.model,"change:status",function(){i._refreshStatus()}),this.listenTo(this.model,"change:info",function(){i._refreshInfo()}),this.listenTo(this.model,"change:file_name",function(){i._refreshFileName()}),this.listenTo(this.model,"change:file_mode",function(){i._refreshMode()}),this.listenTo(this.model,"change:file_size",function(){i._refreshFileSize()}),this.listenTo(this.model,"remove",function(){i.remove()}),this.app.collection.on("reset",function(){i.remove()})},render:function(){this.$el.attr("id","upload-row-"+this.model.id),this.$file_name.html(s.escape(this.model.get("file_name")||"-")),this.$file_desc.html(this.model.get("file_desc")||"Unavailable"),this.$file_size.html(d.default.bytesToString(this.model.get("file_size"))),this.$status.removeClass().addClass(this.status_classes.init)},remove:function(){e.View.prototype.remove.apply(this)},_refreshReady:function(){this.app.collection.each(function(e){e.set("status",e.get("file_size")>0&&"ready"||"init")})},_refreshMode:function(){"new"==this.model.get("file_mode")?(this.height=this.$el.height(),this.$text.css({width:this.$el.width()-16+"px",top:this.$el.height()-8+"px"}).show(),this.$el.height(this.$el.height()-8+this.$text.height()+16),this.$text_content.val("").trigger("keyup")):(this.$el.height(this.height),this.$text.hide())},_refreshInfo:function(){var e=this.model.get("info");e?this.$info_text.html("<strong>Failed: </strong>"+e).show():this.$info_text.hide()},_refreshPercentage:function(){var e=parseInt(this.model.get("percentage"));0!=e?this.$progress_bar.css({width:e+"%"}):(this.$progress_bar.addClass("no-transition"),this.$progress_bar.css({width:"0%"}),this.$progress_bar[0].offsetHeight,this.$progress_bar.removeClass("no-transition")),this.$percentage.html(100!=e?e+"%":"Adding to history...")},_refreshStatus:function(){var e=this.model.get("status");this.$status.removeClass().addClass(this.status_classes[e]),this.model.set("enabled","running"!=e),this.$text_content.attr("disabled",!this.model.get("enabled")),this.$el.removeClass("success danger warning"),"running"!=e&&"ready"!=e||this.model.set("percentage",0),this.$source.find(".button")["running"==e?"addClass":"removeClass"]("disabled"),"success"==e&&(this.$el.addClass("success"),this.model.set("percentage",100),this.$percentage.html("100%")),"error"==e?(this.$el.addClass("danger"),this.model.set("percentage",0),this.$info_progress.hide(),this.$info_text.show()):(this.$info_progress.show(),this.$info_text.hide())},_refreshFileName:function(){this.$file_name.html(this.model.get("file_name")||"-")},_refreshFileSize:function(){this.$file_size.html(d.default.bytesToString(this.model.get("file_size")))},_showFtp:function(){if(this.ftp.visible)this.ftp.hide();else{var e=this;this.ftp.empty(),this.ftp.append(new f.default({ftp_upload_site:this.app.ftp_upload_site,onchange:function(t){e.ftp.hide(),"running"!=e.model.get("status")&&t&&(e.model.reset({file_mode:"ftp",file_name:t.path,file_size:t.size,file_path:t.path}),e._refreshReady())}}).$el),this.ftp.show()}},_showSettings:function(){this.settings.visible?this.settings.hide():(this.settings.empty(),this.settings.append(new u.default(this).$el),this.settings.show())},_template:function(){return'<tr class="upload-row"><td><div class="upload-source"/><div class="upload-text-column"><div class="upload-text"><div class="upload-text-info">You can tell Galaxy to download data from web by entering URL in this box (one per line). You can also directly paste the contents of a file.</div><textarea class="upload-text-content form-control"/></div></div></td><td><div class="upload-status"/></td><td><div class="upload-file-desc upload-title"/></td><td><div class="upload-file-name upload-title"/></td><td><div class="upload-file-size upload-size"/></td><td><div class="upload-settings upload-icon-button fa fa-gear"/></td><td><div class="upload-info"><div class="upload-info-text"/><div class="upload-info-progress progress"><div class="upload-progress-bar progress-bar progress-bar-success"/><div class="upload-percentage">0%</div></div></div></td></tr>'}})}).call(t,i(2),i(0),i(1))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(3),l=a(o),r=i(5),d=(a(r),i(49)),c=a(d),u=i(261),h=a(u),f=i(89),p=a(f),m=i(90),g=a(m),_=i(26),v=a(_),w=i(12),y=a(w),b=i(6),x=a(b),$=i(35);a($);i(91),t.default=e.View.extend({upload_size:0,collection:new c.default.Collection,counter:{announce:0,success:0,error:0,running:0,reset:function(){this.announce=this.success=this.error=this.running=0}},initialize:function(e){var t=this;this.app=e,this.options=e.options,this.list_extensions=e.list_extensions,this.list_genomes=e.list_genomes,this.ui_button=e.ui_button,this.ftp_upload_site=e.currentFtp(),this.setElement(this._template()),this.btnLocal=new x.default.Button({id:"btn-local",title:(0,l.default)("Choose local files"),onclick:function(){t.uploadbox.select()},icon:"fa fa-laptop"}),this.btnFtp=new x.default.Button({id:"btn-ftp",title:(0,l.default)("Choose FTP files"),onclick:function(){t._eventFtp()},icon:"fa fa-folder-open-o"}),this.btnCreate=new x.default.Button({id:"btn-new",title:"Paste/Fetch data",onclick:function(){t._eventCreate()},icon:"fa fa-edit"}),this.btnStart=new x.default.Button({id:"btn-start",title:(0,l.default)("Start"),onclick:function(){t._eventStart()}}),this.btnBuild=new x.default.Button({id:"btn-build",title:(0,l.default)("Build"),onclick:function(){t._eventBuild()}}),this.btnStop=new x.default.Button({id:"btn-stop",title:(0,l.default)("Pause"),onclick:function(){t._eventStop()}}),this.btnReset=new x.default.Button({id:"btn-reset",title:(0,l.default)("Reset"),onclick:function(){t._eventReset()}}),this.btnClose=new x.default.Button({id:"btn-close",title:(0,l.default)("Close"),onclick:function(){t.app.modal.hide()}}),n.each([this.btnLocal,this.btnFtp,this.btnCreate,this.btnStop,this.btnReset,this.btnStart,this.btnBuild,this.btnClose],function(e){t.$(".upload-buttons").prepend(e.$el)}),this.uploadbox=this.$(".upload-box").uploadbox({url:this.app.options.nginx_upload_path,announce:function(e,i){t._eventAnnounce(e,i)},initialize:function(e){return t.app.toData([t.collection.get(e)],t.history_id)},progress:function(e,i){t._eventProgress(e,i)},success:function(e,i){t._eventSuccess(e,i)},error:function(e,i){t._eventError(e,i)},complete:function(){t._eventComplete()},ondragover:function(){t.$(".upload-box").addClass("highlight")},ondragleave:function(){t.$(".upload-box").removeClass("highlight")}}),this.ftp=new v.default.View({title:(0,l.default)("FTP files"),container:this.btnFtp.$el}),this.select_extension=new y.default.View({css:"upload-footer-selection-compressed",container:this.$(".upload-footer-extension"),data:n.filter(this.list_extensions,function(e){return!e.composite_files}),value:this.options.default_extension,onchange:function(e){t.updateExtension(e)}}),this.collectionType="list",this.select_collection=new y.default.View({css:"upload-footer-selection-compressed",container:this.$(".upload-footer-collection-type"),data:[{id:"list",text:"List"},{id:"paired",text:"Paired"},{id:"list:paired",text:"List of Pairs"}],value:"list",onchange:function(e){t.updateCollectionType(e)}}),this.$(".upload-footer-extension-info").on("click",function(e){new g.default({$el:s(e.target),title:t.select_extension.text(),extension:t.select_extension.value(),list:t.list_extensions,placement:"top"})}).on("mousedown",function(e){e.preventDefault()}),this.select_genome=new y.default.View({css:"upload-footer-selection",container:this.$(".upload-footer-genome"),data:this.list_genomes,value:this.options.default_genome,onchange:function(e){t.updateGenome(e)}}),this.collection.on("remove",function(e){t._eventRemove(e)}),this._updateScreen()},_eventAnnounce:function(e,t){this.counter.announce++;var i=new c.default.Model({id:e,file_name:t.name,file_size:t.size,file_mode:t.mode||"local",file_path:t.path,file_data:t,extension:this.select_extension.value(),genome:this.select_genome.value()});this.collection.add(i);var n=new h.default(this,{model:i});this.$(".upload-table > tbody:first").append(n.$el),this._updateScreen(),n.render()},_eventProgress:function(e,t){var i=this.collection.get(e);i.set("percentage",t),this.ui_button.model.set("percentage",this._uploadPercentage(t,i.get("file_size")))},_eventSuccess:function(e,t){var i=n.pluck(t.outputs,"hid"),s=this.collection.get(e);s.set({percentage:100,status:"success",hids:i}),this.ui_button.model.set("percentage",this._uploadPercentage(100,s.get("file_size"))),this.upload_completed+=100*s.get("file_size"),this.counter.announce--,this.counter.success++,this._updateScreen(),Galaxy.currHistoryPanel.refreshContents()},_eventError:function(e,t){var i=this.collection.get(e);i.set({percentage:100,status:"error",info:t}),this.ui_button.model.set({percentage:this._uploadPercentage(100,i.get("file_size")),status:"danger"}),this.upload_completed+=100*i.get("file_size"),this.counter.announce--,this.counter.error++,this._updateScreen()},_eventComplete:function(){this.collection.each(function(e){"queued"==e.get("status")&&e.set("status","init")}),this.counter.running=0,this._updateScreen()},_eventBuild:function(){var e=[];n.forEach(this.collection.models,function(t){e.push.apply(e,t.get("hids"))});var t=n.map(e,function(e){return Galaxy.currHistoryPanel.collection.getByHid(e)}),i=new Galaxy.currHistoryPanel.collection.constructor(t);i.historyId=Galaxy.currHistoryPanel.collection.historyId,Galaxy.currHistoryPanel.buildCollection(this.collectionType,i,!0),this.counter.running=0,this._updateScreen(),this._eventReset(),this.app.modal.hide()},_eventRemove:function(e){var t=e.get("status");"success"==t?this.counter.success--:"error"==t?this.counter.error--:this.counter.announce--,this.uploadbox.remove(e.id),this._updateScreen()},_eventFtp:function(){if(this.ftp.visible)this.ftp.hide();else{this.ftp.empty();var e=this;this.ftp.append(new p.default({collection:this.collection,ftp_upload_site:this.ftp_upload_site,onadd:function(t){return e.uploadbox.add([{mode:"ftp",name:t.path,size:t.size,path:t.path}])},onremove:function(t){e.collection.remove(t)}}).$el),this.ftp.show()}},_eventCreate:function(){this.uploadbox.add([{name:"New File",size:0,mode:"new"}])},_eventStart:function(){if(!(0==this.counter.announce||this.counter.running>0)){var e=this;this.upload_size=0,this.upload_completed=0,this.collection.each(function(t){"init"==t.get("status")&&(t.set("status","queued"),e.upload_size+=t.get("file_size"))}),this.ui_button.model.set({percentage:0,status:"success"}),this.counter.running=this.counter.announce,this.history_id=this.app.currentHistory(),this.uploadbox.start(),this._updateScreen()}},_eventStop:function(){this.counter.running>0&&(this.ui_button.model.set("status","info"),s(".upload-top-info").html("Queue will pause after completing the current file..."),this.uploadbox.stop())},_eventReset:function(){0==this.counter.running&&(this.collection.reset(),this.counter.reset(),this.uploadbox.reset(),this.select_extension.value(this.options.default_extension),this.select_genome.value(this.options.default_genome),this.ui_button.model.set("percentage",0),this._updateScreen())},updateExtension:function(e,t){var i=this;this.collection.each(function(n){"init"!=n.get("status")||n.get("extension")!=i.options.default_extension&&t||n.set("extension",e)})},updateCollectionType:function(e){this.collectionType=e},updateGenome:function(e,t){var i=this;this.collection.each(function(n){"init"!=n.get("status")||n.get("genome")!=i.options.default_genome&&t||n.set("genome",e)})},_updateScreen:function(){var e="";e=0==this.counter.announce?this.uploadbox.compatible()?"&nbsp;":"Browser does not support Drag & Drop. Try Firefox 4+, Chrome 7+, IE 10+, Opera 12+ or Safari 6+.":0==this.counter.running?"You added "+this.counter.announce+" file(s) to the queue. Add more files or click 'Start' to proceed.":"Please wait..."+this.counter.announce+" out of "+this.counter.running+" remaining.",this.$(".upload-top-info").html(e);var t=0==this.counter.running&&this.counter.announce+this.counter.success+this.counter.error>0,i=0==this.counter.running&&this.counter.announce>0,n=0==this.counter.running&&0==this.counter.announce&&this.counter.success>0&&0==this.counter.error,s=0==this.counter.running,a=this.counter.announce+this.counter.success+this.counter.error>0;this.btnReset[t?"enable":"disable"](),this.btnStart[i?"enable":"disable"](),this.btnStart.$el[i?"addClass":"removeClass"]("btn-primary"),this.btnBuild[n?"enable":"disable"](),this.btnBuild.$el[n?"addClass":"removeClass"]("btn-primary"),this.btnStop[this.counter.running>0?"enable":"disable"](),this.btnLocal[s?"enable":"disable"](),this.btnFtp[s?"enable":"disable"](),this.btnCreate[s?"enable":"disable"](),this.btnFtp.$el[this.ftp_upload_site?"show":"hide"](),this.$(".upload-table")[a?"show":"hide"](),this.$(".upload-helper")[a?"hide":"show"]()},_uploadPercentage:function(e,t){return(this.upload_completed+e*t)/this.upload_size},_template:function(){return'<div class="upload-view-default"><div class="upload-top"><h6 class="upload-top-info"/></div><div class="upload-box"><div class="upload-helper"><i class="fa fa-files-o"/>Drop files here</div><table class="upload-table ui-table-striped" style="display: none;"><thead><tr><th>Name</th><th>Size</th><th>Status</th><th/></tr></thead><tbody/></table></div><div class="upload-footer"><span class="upload-footer-title-compressed">Collection Type:</span><span class="upload-footer-collection-type"/><span class="upload-footer-title-compressed">File Type:</span><span class="upload-footer-extension"/><span class="upload-footer-extension-info upload-icon-button fa fa-search"/> <span class="upload-footer-title-compressed">Genome (set all):</span><span class="upload-footer-genome"/></div><div class="upload-buttons"/></div>'}})}).call(t,i(2),i(1),i(0))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(3),l=a(o),r=i(5),d=a(r),c=i(49),u=(a(c),i(88)),h=a(u),f=i(26),p=a(f),m=i(12);a(m);t.default=e.View.extend({status_classes:{init:"upload-icon-button fa fa-trash-o",queued:"upload-icon fa fa-spinner fa-spin",running:"upload-icon fa fa-spinner fa-spin",success:"upload-icon-button fa fa-check",error:"upload-icon-button fa fa-exclamation-triangle"},initialize:function(e,t){var i=this;this.app=e,this.model=t.model,this.setElement(this._template(t.model)),this.$mode=this.$(".upload-mode"),this.$title=this.$(".upload-title-extended"),this.$text=this.$(".upload-text"),this.$size=this.$(".upload-size"),this.$info_text=this.$(".upload-info-text"),this.$info_progress=this.$(".upload-info-progress"),this.$text_content=this.$(".upload-text-content"),this.$symbol=this.$(".upload-symbol"),this.$progress_bar=this.$(".upload-progress-bar"),this.$percentage=this.$(".upload-percentage"),this.settings=new p.default.View({title:(0,l.default)("Upload configuration"),container:this.$(".upload-settings"),placement:"bottom"});this.app.select_genome.value(),this.app.select_extension.value();this.$symbol.on("click",function(){i._removeRow()}),this.$text_content.on("change input",function(e){i.model.set({url_paste:n(e.target).val(),file_size:n(e.target).val().length})}),this.listenTo(this.model,"change:percentage",function(){i._refreshPercentage()}),this.listenTo(this.model,"change:status",function(){i._refreshStatus()}),this.listenTo(this.model,"change:info",function(){i._refreshInfo()}),this.listenTo(this.model,"change:file_size",function(){i._refreshFileSize()}),this.listenTo(this.model,"remove",function(){i.remove()}),this.app.collection.on("reset",function(){i.remove()})},render:function(){var e=this.model.attributes;this.$title.html(s.escape(e.file_name)),this.$size.html(d.default.bytesToString(e.file_size)),this.$mode.removeClass().addClass("upload-mode").addClass("text-primary"),"new"==e.file_mode?(this.$text.css({width:this.$el.width()-16+"px",top:this.$el.height()-8+"px"}).show(),this.$el.height(this.$el.height()-8+this.$text.height()+16),this.$mode.addClass("fa fa-edit")):"local"==e.file_mode?this.$mode.addClass("fa fa-laptop"):"ftp"==e.file_mode&&this.$mode.addClass("fa fa-folder-open-o")},_refreshInfo:function(){var e=this.model.get("info");e?this.$info_text.html("<strong>Failed: </strong>"+e).show():this.$info_text.hide()},_refreshPercentage:function(){var e=parseInt(this.model.get("percentage"));this.$progress_bar.css({width:e+"%"}),this.$percentage.html(100!=e?e+"%":"Adding to history...")},_refreshStatus:function(){var e=this.model.get("status");this.$symbol.removeClass().addClass("upload-symbol").addClass(this.status_classes[e]),this.model.set("enabled","init"==e);var t=this.model.get("enabled");this.$text_content.attr("disabled",!t),"success"==e&&(this.$el.addClass("success"),this.$percentage.html("100%")),"error"==e&&(this.$el.addClass("danger"),this.$info_progress.hide())},_refreshFileSize:function(){this.$size.html(d.default.bytesToString(this.model.get("file_size")))},_removeRow:function(){-1!==["init","success","error"].indexOf(this.model.get("status"))&&this.app.collection.remove(this.model)},_showSettings:function(){this.settings.visible?this.settings.hide():(this.settings.empty(),this.settings.append(new h.default(this).$el),this.settings.show())},_template:function(e){return'<tr id="upload-row-'+e.id+'" class="upload-row"><td><div class="upload-text-column"><div class="upload-mode"/><div class="upload-title-extended"/><div class="upload-text"><div class="upload-text-info">You can tell Galaxy to download data from web by entering URL in this box (one per line). You can also directly paste the contents of a file.</div><textarea class="upload-text-content form-control"/></div></div></td><td><div class="upload-size"/></td><td><div class="upload-info"><div class="upload-info-text"/><div class="upload-info-progress progress"><div class="upload-progress-bar progress-bar progress-bar-success"/><div class="upload-percentage">0%</div></div></div></td><td><div class="upload-symbol '+this.status_classes.init+'"/></td></tr>'}})}).call(t,i(2),i(0),i(1))},function(e,t,i){"use strict";(function(e){function n(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=i(6),a=n(s),o=i(263),l=n(o),r=i(264),d=n(r),c=i(3),u=n(c),h=e.View.extend({initialize:function(t,i){var n=this;this.userIsAnonymous=Galaxy.user.isAnonymous(),this.allow_user_dataset_purge=i.config.allow_user_dataset_purge,this.root=i.root,this.historyView=new d.default.CurrentHistoryView({className:d.default.CurrentHistoryView.prototype.className+" middle",purgeAllowed:this.allow_user_dataset_purge,linkTarget:"galaxy_main"}),Galaxy.currHistoryPanel=this.historyView,Galaxy.currHistoryPanel.listenToGalaxy(Galaxy),this.buttonRefresh=new a.default.ButtonLink({id:"history-refresh-button",title:(0,u.default)("Refresh history"),cls:"panel-header-button",icon:"fa fa-refresh",onclick:function(){n.historyView.loadCurrentHistory()}}),this.buttonOptions=new a.default.ButtonLink({id:"history-options-button",title:(0,u.default)("History options"),cls:"panel-header-button",target:"galaxy_main",icon:"fa fa-cog",href:this.root+"root/history_options"}),this.buttonViewMulti=new a.default.ButtonLink({id:"history-view-multi-button",title:(0,u.default)("View all histories"),cls:"panel-header-button",icon:"fa fa-columns",href:this.root+"history/view_multiple"}),this.model=new e.Model({cls:"history-right-panel",title:(0,u.default)("History"),buttons:[this.buttonRefresh,this.buttonOptions,this.buttonViewMulti]}),this.setElement(this._template()),this.historyView.setElement(this.$el),this.historyView.connectToQuotaMeter(Galaxy.quotaMeter),this.historyView.loadCurrentHistory(),Galaxy.listenTo(this.historyView,"history-size-change",function(){Galaxy.user.fetch({url:Galaxy.user.urlRoot()+"/"+(Galaxy.user.id||"current")})})},render:function(){this.optionsMenu=(0,l.default)(this.buttonOptions.$el,{anonymous:this.userIsAnonymous,purgeAllowed:this.allow_user_dataset_purge,root:this.root}),this.buttonViewMulti.$el[this.userIsAnonymous?"hide":"show"]()},_template:function(e){return['<div id="current-history-panel" class="history-panel middle"/>'].join("")},toString:function(){return"historyPanel"}});t.default=h}).call(t,i(2))},function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}function a(e,t,i){return n.clone(m).filter(function(n){return!(e&&!n.anon)&&(!(!t&&n.purge)&&(n.href&&(n.href=i+n.href,n.target=n.target||"galaxy_main"),n.confirm&&(n.func=function(){confirm(n.confirm)&&(galaxy_main.location=n.href)}),!0))})}Object.defineProperty(t,"__esModule",{value:!0});var o=i(47),l=s(o),r=i(55),d=s(r),c=i(4),u=(s(c),i(3)),h=s(u),f=i(68),p=s(f),m=[{html:(0,h.default)("History Lists"),header:!0},{html:(0,h.default)("Saved Histories"),href:"histories/list",target:"_top"},{html:(0,h.default)("Histories Shared with Me"),href:"histories/list_shared",target:"_top"},{html:(0,h.default)("Current History"),header:!0,anon:!0},{html:(0,h.default)("Create New"),func:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.createNewHistory()}},{html:(0,h.default)("Copy History"),func:function(){(0,d.default)(Galaxy.currHistoryPanel.model).done(function(){Galaxy.currHistoryPanel.loadCurrentHistory()})}},{html:(0,h.default)("Share or Publish"),href:"history/sharing"},{html:(0,h.default)("Show Structure"),href:"history/display_structured",anon:!0},{html:(0,h.default)("Extract Workflow"),href:"workflow/build_from_current_history"},{html:(0,h.default)("Delete"),anon:!0,func:function(){Galaxy&&Galaxy.currHistoryPanel&&confirm((0,h.default)("Really delete the current history?"))&&Galaxy.currHistoryPanel.model._delete().done(function(){Galaxy.currHistoryPanel.loadCurrentHistory()})}},{html:(0,h.default)("Delete Permanently"),purge:!0,anon:!0,func:function(){Galaxy&&Galaxy.currHistoryPanel&&confirm((0,h.default)("Really delete the current history permanently? This cannot be undone."))&&Galaxy.currHistoryPanel.model.purge().done(function(){Galaxy.currHistoryPanel.loadCurrentHistory()})}},{html:(0,h.default)("Dataset Actions"),header:!0,anon:!0},{html:(0,h.default)("Copy Datasets"),href:"dataset/copy_datasets"},{html:(0,h.default)("Dataset Security"),func:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.router&&Galaxy.router.push("/histories/permissions?id="+Galaxy.currHistoryPanel.model.id)}},{html:(0,h.default)("Resume Paused Jobs"),href:"history/resume_paused_jobs?current=True",anon:!0},{html:(0,h.default)("Collapse Expanded Datasets"),func:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.collapseAll()}},{html:(0,h.default)("Unhide Hidden Datasets"),anon:!0,func:function(){Galaxy&&Galaxy.currHistoryPanel&&confirm((0,h.default)("Really unhide all hidden datasets?"))&&e.post(Galaxy.root+"history/adjust_hidden",{user_action:"unhide"},function(){Galaxy.currHistoryPanel.loadCurrentHistory()})}},{html:(0,h.default)("Delete Hidden Datasets"),anon:!0,func:function(){Galaxy&&Galaxy.currHistoryPanel&&confirm((0,h.default)("Really delete all hidden datasets?"))&&e.post(Galaxy.root+"history/adjust_hidden",{user_action:"delete"},function(){Galaxy.currHistoryPanel.loadCurrentHistory()})}},{html:(0,h.default)("Purge Deleted Datasets"),confirm:(0,h.default)("Really delete all deleted datasets permanently? This cannot be undone."),href:"history/purge_deleted_datasets",purge:!0,anon:!0},{html:(0,h.default)("Downloads"),header:!0},{html:(0,h.default)("Export Tool Citations"),anon:!0,func:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.router&&Galaxy.router.push("/histories/citations?id="+Galaxy.currHistoryPanel.model.id)}},{html:(0,h.default)("Export History to File"),href:"history/export_archive?preview=True",anon:!0},{html:(0,h.default)("Other Actions"),header:!0},{html:(0,h.default)("Import from File"),href:"histories/import",target:"_top"}];p.default.add({url:"api/webhooks/history-menu/all",async:!1,callback:function(t){var i=[];e.each(t.models,function(e,t){var n=t.toJSON();n.activate&&i.push({html:(0,h.default)(n.config.title),anon:!0})}),i.length>0&&(i.unshift({html:(0,h.default)("Webhooks"),header:!0}),e.merge(m,i))}});var g=function(e,t){t=t||{};var i=void 0===t.anonymous||t.anonymous,n=t.purgeAllowed||!1,s=a(i,n,Galaxy.root);return new l.default(e,s)};t.default=g}).call(t,i(0),i(1))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(29),l=(a(o),i(71)),r=a(l),d=i(4),c=a(d),u=i(3),h=a(u),f=c.default.SessionStorageModel.extend({defaults:{tagsEditorShown:!1,annotationEditorShown:!1,scrollPosition:0},toString:function(){return"HistoryViewPrefs("+JSON.stringify(this.toJSON())+")"}});f.storageKey=function(){return"history-panel"};var p=r.default.HistoryViewEdit,m=p.extend({className:p.prototype.className+" current-history-panel",HDCAViewClass:p.prototype.HDCAViewClass.extend({foldoutStyle:"drilldown"}),emptyMsg:[(0,h.default)("This history is empty"),". ",(0,h.default)("You can "),'<a class="uploader-link" href="javascript:void(0)">',(0,h.default)("load your own data"),"</a>",(0,h.default)(" or "),'<a class="get-data-link" href="javascript:void(0)">',(0,h.default)("get data from an external source"),"</a>"].join(""),initialize:function(t){t=t||{},this.preferences=new f(e.extend({id:f.storageKey()},e.pick(t,e.keys(f.prototype.defaults)))),p.prototype.initialize.call(this,t),this.panelStack=[],this.currentContentId=t.currentContentId||null},_setUpListeners:function(){p.prototype._setUpListeners.call(this);var e=this;this.on("new-model",function(){e.preferences.set("scrollPosition",0)})},loadCurrentHistory:function(){return this.loadHistory(null,{url:Galaxy.root+"history/current_history_json"})},switchToHistory:function(e,t){return Galaxy.user.isAnonymous()?(this.trigger("error",(0,h.default)("You must be logged in to switch histories"),(0,h.default)("Anonymous user")),n.when()):this.loadHistory(e,{url:Galaxy.root+"history/set_as_current?id="+e})},createNewHistory:function(e){return Galaxy.user.isAnonymous()?(this.trigger("error",(0,h.default)("You must be logged in to create histories"),(0,h.default)("Anonymous user")),n.when()):this.loadHistory(null,{url:Galaxy.root+"history/create_new_current"})},setModel:function(e,t,i){return p.prototype.setModel.call(this,e,t,i),this.model&&this.model.id&&(this.log("checking for updates"),this.model.checkForUpdates()),this},_setUpModelListeners:function(){return p.prototype._setUpModelListeners.call(this),this.listenTo(this.model,{"change:nice_size change:size":function(){this.trigger("history-size-change",this,this.model,arguments)},"change:id":function(){this.once("loading-done",function(){this.model.checkForUpdates()})}})},_setUpCollectionListeners:function(){p.prototype._setUpCollectionListeners.call(this),this.listenTo(this.collection,"state:ready",function(e,t,i){e.get("visible")||this.collection.storage.includeHidden()||this.removeItemView(e)})},_setUpBehaviors:function(t){t=t||this.$el;var i=this;return p.prototype._setUpBehaviors.call(i,t),this._debouncedScrollCaptureHandler||(this._debouncedScrollCaptureHandler=e.debounce(function(){i.$el.is(":visible")&&i.preferences.set("scrollPosition",n(this).scrollTop())},40)),i.$scrollContainer(t).off("scroll",this._debouncedScrollCaptureHandler).on("scroll",this._debouncedScrollCaptureHandler),i},_buildNewRender:function(){if(!this.model)return n();var e=p.prototype._buildNewRender.call(this);return e.find(".search").prependTo(e.find("> .controls")),this._renderQuotaMessage(e),e},_renderQuotaMessage:function(e){return e=e||this.$el,n(this.templates.quotaMsg({},this)).prependTo(e.find(".messages"))},_renderTags:function(e){var t=this;p.prototype._renderTags.call(t,e),t.preferences.get("tagsEditorShown")&&t.tagsEditor.toggle(!0),t.listenTo(t.tagsEditor,"hiddenUntilActivated:shown hiddenUntilActivated:hidden",function(e){t.preferences.set("tagsEditorShown",e.hidden)})},_renderAnnotation:function(e){var t=this;p.prototype._renderAnnotation.call(t,e),t.preferences.get("annotationEditorShown")&&t.annotationEditor.toggle(!0),t.listenTo(t.annotationEditor,"hiddenUntilActivated:shown hiddenUntilActivated:hidden",function(e){t.preferences.set("annotationEditorShown",e.hidden)})},_swapNewRender:function(t){p.prototype._swapNewRender.call(this,t);var i=this;return e.delay(function(){var e=i.preferences.get("scrollPosition");e&&i.scrollTo(e,0)},10),this},_attachItems:function(e){p.prototype._attachItems.call(this,e);var t=this;return t.currentContentId&&t._setCurrentContentById(t.currentContentId),this},addItemView:function(e,t,i){var n=p.prototype.addItemView.call(this,e,t,i);return n&&this.panelStack.length?this._collapseDrilldownPanel():n},_setUpItemViewListeners:function(e){var t=this;return p.prototype._setUpItemViewListeners.call(t,e),t.listenTo(e,{"expanded:drilldown":function(e,t){this._expandDrilldownPanel(t)},"collapsed:drilldown":function(e,t){this._collapseDrilldownPanel(t)}})},setCurrentContent:function(e){this.$(".history-content.current-content").removeClass("current-content"),e?(e.$el.addClass("current-content"),this.currentContentId=e.model.id):this.currentContentId=null},_setCurrentContentById:function(e){var t=this.viewFromModelId(e)||null;this.setCurrentContent(t)},_expandDrilldownPanel:function(e){this.panelStack.push(e),this.$controls().add(this.$list()).hide(),e.parentName=this.model.get("name"),e.delegateEvents().render().$el.appendTo(this.$el)},_collapseDrilldownPanel:function(e){this.panelStack.pop(),this.$controls().add(this.$list()).show()},events:e.extend(e.clone(p.prototype.events),{"click .uploader-link":function(e){Galaxy.upload.show(e)},"click .get-data-link":function(e){var t=n(".toolMenuContainer");t.parent().scrollTop(0),t.find('span:contains("Get Data")').click()}}),listenToGalaxy:function(t){this.listenTo(t,{"center-frame:load":function(t){var i=t.fullpath,n=null,s={display:/datasets\/([a-f0-9]+)\/display/,edit:/datasets\/([a-f0-9]+)\/edit/,report_error:/dataset\/errors\?id=([a-f0-9]+)/,rerun:/tool_runner\/rerun\?id=([a-f0-9]+)/,show_params:/datasets\/([a-f0-9]+)\/show_params/};e.find(s,function(t,s){return n=e.result(i.match(t),1)}),this._setCurrentContentById(n?"dataset-"+n:null)},"center-panel:load":function(e){this._setCurrentContentById()}})},connectToQuotaMeter:function(e){return e?(this.listenTo(e,"quota:over",this.showQuotaMessage),this.listenTo(e,"quota:under",this.hideQuotaMessage),this.on("rendered rendered:initial",function(){e&&e.isOverQuota()&&this.showQuotaMessage()}),this):this},clearMessages:function(t){var i=e.isUndefined(t)?this.$messages().children('[class$="message"]'):n(t.currentTarget);return i=i.not(".quota-message"),i.fadeOut(this.fxSpeed,function(){n(this).remove()}),this},showQuotaMessage:function(){var e=this.$(".quota-message");e.is(":hidden")&&e.slideDown(this.fxSpeed)},hideQuotaMessage:function(){var e=this.$(".quota-message");e.is(":hidden")||e.slideUp(this.fxSpeed)},unhideHidden:function(){var e=this;return confirm((0,h.default)("Really unhide all hidden datasets?"))?e.model.contents._filterAndUpdate({visible:!1,deleted:"",purged:""},{visible:!0}).done(function(){e.model.contents.includeHidden||e.renderItems()}):s.when()},deleteHidden:function(){var e=this;return confirm((0,h.default)("Really delete all hidden datasets?"))?e.model.contents._filterAndUpdate({visible:!1,deleted:"",purged:""},{deleted:!0,visible:!0}):s.when()},toString:function(){return"CurrentHistoryView("+(this.model?this.model.get("name"):"")+")"}});m.prototype.templates=function(){var t=c.default.wrapTemplate(['<div class="quota-message errormessage">',(0,h.default)("You are over your disk quota"),". ",(0,h.default)("Tool execution is on hold until your disk usage drops below your allocated quota"),".","</div>"],"history");return e.extend(e.clone(p.prototype.templates),{quotaMsg:t})}(),t.default={CurrentHistoryView:m}}).call(t,i(1),i(0),i(0))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(3),l=a(o),r=i(13),d=(a(r),i(6)),c=a(d),u=i(25),h=a(u),f=e.Model.extend({initialize:function(e){e=e||{},e.user_id=e.user_id||Galaxy.user.id,this.set({user_id:e.user_id,information:{title:(0,l.default)("Manage information"),description:"Edit your email, addresses and custom parameters or change your username.",url:"api/users/"+e.user_id+"/information/inputs",icon:"fa-user",redirect:"user"},password:{title:(0,l.default)("Change password"),description:(0,l.default)("Allows you to change your login credentials."),icon:"fa-unlock-alt",url:"api/users/"+e.user_id+"/password/inputs",submit_title:"Save password",redirect:"user"},communication:{title:(0,l.default)("Change communication settings"),description:(0,l.default)("Enable or disable the communication feature to chat with other users."),url:"api/users/"+e.user_id+"/communication/inputs",icon:"fa-comments-o",redirect:"user"},permissions:{title:(0,l.default)("Set dataset permissions for new histories"),description:"Grant others default access to newly created histories. Changes made here will only affect histories created after these settings have been stored.",url:"api/users/"+e.user_id+"/permissions/inputs",icon:"fa-users",submit_title:"Save permissions",redirect:"user"},api_key:{title:(0,l.default)("Manage API key"),description:(0,l.default)("Access your current API key or create a new one."),url:"api/users/"+e.user_id+"/api_key/inputs",icon:"fa-key",submit_title:"Create a new key",submit_icon:"fa-check"},toolbox_filters:{title:(0,l.default)("Manage Toolbox filters"),description:(0,l.default)("Customize your Toolbox by displaying or omitting sets of Tools."),url:"api/users/"+e.user_id+"/toolbox_filters/inputs",icon:"fa-filter",submit_title:"Save filters",redirect:"user"},openids:{title:(0,l.default)("Manage OpenIDs"),description:(0,l.default)("Associate OpenIDs with your account."),icon:"fa-openid",onclick:function(){window.location.href=Galaxy.root+"openids/list"}},custom_builds:{title:(0,l.default)("Manage custom builds"),description:(0,l.default)("Add or remove custom builds using history datasets."),icon:"fa-cubes",onclick:function(){window.location.href=Galaxy.root+"custom_builds"}},logout:{title:(0,l.default)("Sign out"),description:(0,l.default)("Click here to sign out of all sessions."),icon:"fa-sign-out",onclick:function(){Galaxy.modal.show({title:(0,l.default)("Sign out"),body:"Do you want to continue and sign out of all active sessions?",buttons:{Cancel:function(){Galaxy.modal.hide()},"Sign out":function(){window.location.href=Galaxy.root+"user/logout?session_csrf_token="+Galaxy.session_csrf_token}}})}}})}}),p=e.View.extend({title:(0,l.default)("User Preferences"),initialize:function(){this.model=new f,this.setElement("<div/>"),this.render()},render:function(){var e=this,t=Galaxy.config;n.getJSON(Galaxy.root+"api/users/"+Galaxy.user.id,function(i){e.$preferences=n("<div/>").addClass("ui-panel").append(n("<h2/>").append("User preferences")).append(n("<p/>").append("You are logged in as <strong>"+s.escape(i.email)+"</strong>.")).append(e.$table=n("<table/>").addClass("ui-panel-table"));var a=h.default.get("message"),o=h.default.get("status");a&&o&&e.$preferences.prepend(new c.default.Message({message:a,status:o}).$el),t.use_remote_user||(e._addLink("information"),e._addLink("password")),t.enable_communication_server&&e._addLink("communication"),e._addLink("custom_builds"),e._addLink("permissions"),e._addLink("api_key"),t.has_user_tool_filters&&e._addLink("toolbox_filters"),t.enable_openid&&!t.use_remote_user&&e._addLink("openids"),Galaxy.session_csrf_token&&e._addLink("logout"),e.$preferences.append(e._templateFooter(i)),e.$el.empty().append(e.$preferences)})},_addLink:function(e){var t=this.model.get(e),i=n(this._templateLink(t)),s=i.find("a");t.onclick?s.on("click",function(){t.onclick()}):s.attr("href",Galaxy.root+"user/"+e),this.$table.append(i)},_templateLink:function(e){return'<tr><td><div class="ui-panel-icon fa '+e.icon+'"></td><td><a class="ui-panel-anchor" href="javascript:void(0)">'+e.title+'</a><div class="ui-form-info">'+e.description+"</div></td></tr>"},_templateFooter:function(e){return'<p class="ui-panel-footer">You are using <strong>'+e.nice_total_disk_usage+"</strong> of disk space in this Galaxy instance. "+(Galaxy.config.enable_quotas?"Your disk quota is: <strong>"+e.quota+"</strong>. ":"")+'Is your usage more than expected? See the <a href="https://galaxyproject.org/learn/managing-datasets/" target="_blank">documentation</a> for tips on how to find all of the data in your account.</p>'}});t.default={View:p,Model:f}}).call(t,i(2),i(0),i(1))},function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=i(3),o=s(a),l=i(5),r=(s(l),i(6)),d=s(r),c=i(13),u=s(c),h=i(267),f=s(h),p=e.Collection.extend({comparator:function(e,t){return e=e.get("name"),t=t.get("name"),e>t?1:e<t?-1:0}}),m=e.View.extend({initialize:function(t){var i=this,s=Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.model.id;this.model=new e.Model,this.model.url=Galaxy.root+"api/histories/"+s+"/custom_builds_metadata",this.collection=new p,this.collection.url=Galaxy.root+"api/users/"+Galaxy.user.id+"/custom_builds",this.message=new d.default.Message({}),this.installed_builds=new d.default.Select.View({optional:!0,onchange:function(){i.installed_builds.value(null)},empty_text:"List of available builds:",error_text:"No system installed builds available."}),this.table=new f.default.View({cls:"grid",selectable:!1}),this.table.addHeader("Name"),this.table.addHeader("Key"),this.table.addHeader("Number of chroms/contigs"),this.table.addHeader(""),this.table.appendHeader(),this.setElement(n("<div/>").append(n("<h4/>").text("Current Custom Builds")).append(this.table.$el).append(this.$installed=n("<div/>").append(n("<h4/>").text("System Installed Builds").addClass("ui-margin-top")).append(this.installed_builds.$el)).append(n("<h4/>").text("Add a Custom Build").addClass("ui-margin-top")).append(n("<span/>").addClass("ui-column").append(n("<div/>").addClass("ui-column-left").append(this.message.$el).append(this.$form=n("<div/>").addClass("ui-margin-top"))).append(this.$help=n("<div/>").addClass("ui-column-right")))),this.listenTo(this.collection,"add remove reset",function(){i._renderTable()}),this.listenTo(this.model,"change",function(){i._renderForm()}),this.collection.fetch(),this.model.fetch()},render:function(){this._renderTable(),this._renderForm()},_renderTable:function(){var e=this;this.table.delAll(),this.collection.sort(),this.collection.each(function(t){e.table.add(t.get("name")),e.table.add(t.id),e.table.add(void 0!==t.get("count")?t.get("count"):"Processing..."),e.table.add(new d.default.ButtonIcon({icon:"fa-trash-o",cls:"ui-button-icon-plain",tooltip:(0,o.default)("Delete custom build."),onclick:function(){t.destroy()}}).$el),e.table.append(t.id)})},_renderForm:function(){var e=this,t=new u.default({inputs:[{type:"text",name:"name",label:"Name",help:"Specify a build name e.g. Hamster."},{type:"text",name:"id",label:"Key",help:"Specify a build key e.g. hamster_v1."},{name:"len",type:"conditional",test_param:{name:"type",label:"Definition",help:(0,o.default)("Provide the data source."),type:"select",value:"fasta",data:[{value:"fasta",label:"FASTA-file from history"},{value:"file",label:"Len-file from disk"},{value:"text",label:"Len-file by copy/paste"}]},cases:[{value:"fasta",inputs:[{type:"select",name:"value",label:"FASTA-file",data:this.model.get("fasta_hdas")}]},{value:"file",inputs:[{type:"upload",name:"value",label:"Len-file",data:this.model.get("len_hdas")}]},{value:"text",inputs:[{type:"text",area:!0,name:"value",label:"Edit/Paste"}]}]}],buttons:{save:new d.default.Button({icon:"fa-save",tooltip:(0,o.default)("Create new Build"),title:(0,o.default)("Save"),cls:"btn btn-primary ui-clear-float",onclick:function(){var i=t.data.create();i.id&&i.name?e.collection.create(i,{wait:!0,success:function(t){t.get("message")?e.message.update({message:t.get("message"),status:"warning"}):e.message.update({message:"Successfully added a new custom build.",status:"success"})},error:function(t,i){var n=i&&i.responseJSON&&i.responseJSON.err_msg;e.message.update({message:n||"Failed to create custom build.",status:"danger"})}}):e.message.update({message:"All inputs are required.",status:"danger"})}})},onchange:function(){var i=t.data.match("len|type");if(i){var n=t.field_list[i];e._renderHelp(n.value())}}});this.$form.empty().append(t.$el);var i=this.model.get("installed_builds");i&&i.length?(this.$installed.show(),this.installed_builds.update(this.model.get("installed_builds"))):this.$installed.hide(),this._renderHelp("fasta")},_renderHelp:function(e){this.$help.empty().addClass("alert alert-info").html("fasta"==e?this._templateFasta():this._templateLen())},_templateLen:function(){return"<h4>Length Format</h4><p>The length format is two-column, separated by whitespace, of the form:<pre>chrom/contig   length of chrom/contig</pre></p><p>For example, the first few entries of <em>mm9.len</em> are as follows:<pre>chr1    197195432\nchr2    181748087\nchr3    159599783\nchr4    155630120\nchr5    152537259</pre></p><p>Trackster uses this information to populate the select box for chrom/contig, andto set the maximum basepair of the track browser. 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"),_template:e.template(["<% if( isAnon ){ %>",'<div class="warningmessage">',"<%- anonWarning %>",(0,u.default)("You can"),' <a href="/user/login">',(0,u.default)("login here"),"</a> ",(0,u.default)("or")," ",' <a href="/user/create">',(0,u.default)("register here"),"</a>.","</div>","<% } %>","<form>",'<label for="copy-modal-title">',(0,u.default)("Enter a title for the new history"),":","</label><br />",'<input id="copy-modal-title" class="form-control" style="width: 100%" value="<%= name %>" />','<p class="invalid-title bg-danger" style="color: red; margin: 8px 0px 8px 0px; display: none">',(0,u.default)("Please enter a valid history title"),"</p>","<% if( allowAll ){ %>","<br />","<p>",(0,u.default)("Choose which datasets from the original history to include:"),"</p>",'<input name="copy-what" type="radio" id="copy-non-deleted" value="copy-non-deleted" ','<% if( copyWhat === "copy-non-deleted" ){ print( "checked" ); } %>/>','<label for="copy-non-deleted"> <%- activeLabel %></label>',"<br />",'<input name="copy-what" type="radio" id="copy-all" value="copy-all" ','<% if( copyWhat === "copy-all" ){ print( "checked" ); } %>/>','<label for="copy-all"> <%- allLabel %></label>',"<% } %>","</form>"].join("")),_showAjaxIndicator:function(){var e='<p><span class="fa fa-spinner fa-spin"></span> '+this.progressive+"...</p>";this.modal.$(".modal-body").empty().append(e).css({"margin-top":"8px"})},dialog:function(t,i,a){function o(){var e=t.$("#copy-modal-title").val();if(!e)return void t.$(".invalid-title").show();var n="copy-all"===t.$('input[name="copy-what"]:checked').val();t.$("button").prop("disabled",!0),l._showAjaxIndicator(),i.copy(!0,e,n).done(function(e){r.resolve(e)}).fail(function(t,s,a){var o={name:e,copyAllDatasets:n};d.default.ajaxErrorModal(i,t,o,l.errorMessage),r.rejectWith(r,arguments)}).done(function(){m&&t.hide()})}a=a||{};var l=this,r=n.Deferred(),c=a.nameFn||this.defaultName,h=c({name:i.get("name")}),f=a.allDatasets?"copy-all":"copy-non-deleted",p=!!e.isUndefined(a.allowAll)||a.allowAll,m=!!e.isUndefined(a.autoClose)||a.autoClose;this.modal=t;var g=a.closing_callback;return t.show(e.extend(a,{title:this.title({name:i.get("name")}),body:s(l._template({name:h,isAnon:Galaxy.user.isAnonymous(),allowAll:p,copyWhat:f,activeLabel:this.activeLabel,allLabel:this.allLabel,anonWarning:this.anonWarning})),buttons:e.object([[(0,u.default)("Cancel"),function(){t.hide()}],[this.submitLabel,o]]),height:"auto",closing_events:!0,closing_callback:function(e){e&&r.reject({cancelled:!0}),g&&g(e)}})),t.$("#copy-modal-title").focus().select(),t.$("#copy-modal-title").on("keydown",function(e){13===e.keyCode&&(e.preventDefault(),o())}),r}},f=e.extend({},h,{defaultName:e.template("imported: <%- name %>"),title:e.template((0,u.default)("Importing history")+' "<%- name %>"'),submitLabel:(0,u.default)("Import"),errorMessage:(0,u.default)("History could not be imported."),progressive:(0,u.default)("Importing history"),activeLabel:(0,u.default)("Import only the active, non-deleted datasets"),allLabel:(0,u.default)("Import all datasets including deleted ones"),anonWarning:(0,u.default)("As an anonymous user, unless you login or register, you will lose your current history ")+(0,u.default)("after importing this history. ")}),p=function(e,t){t=t||{};var i=window.parent.Galaxy.modal||new l.default.View({});return t.useImport?f.dialog(i,e,t):h.dialog(i,e,t)};t.default=p}).call(t,i(1),i(0),i(0))},function(e,t,i){"use strict";(function(e){function n(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var i in e)Object.prototype.hasOwnProperty.call(e,i)&&(t[i]=e[i]);return t.default=e,t}Object.defineProperty(t,"__esModule",{value:!0});var s=i(1),a=n(s),o=i(2),l=n(o),r=i(4),d=function(e){return e&&e.__esModule?e:{default:e}}(r),c=l.Collection.extend({initialize:function(e,t){l.Collection.prototype.initialize.call(this,e,t),this.setOrder(t.order||this.order,{silent:!0})},_setUpListeners:function(){return this.on({"changed-order":this.sort})},fetch:function(e){return e=this._buildFetchOptions(e),Galaxy.debug("fetch options:",e),l.Collection.prototype.fetch.call(this,e)},_buildFetchOptions:function(e){e=a.clone(e)||{};var t=this;e.traditional=!0,e.data=e.data||t._buildFetchData(e),Galaxy.debug("data:",e.data);var i=this._buildFetchFilters(e);return Galaxy.debug("filters:",i),a.isEmpty(i)||a.extend(e.data,this._fetchFiltersToAjaxData(i)),Galaxy.debug("data:",e.data),e},_buildFetchData:function(e){var t={};return this.order&&(t.order=this.order),a.defaults(a.pick(e,this._fetchParams),t)},_fetchParams:["order","limit","offset","view","keys"],_buildFetchFilters:function(e){return a.clone(e.filters||{})},_fetchFiltersToAjaxData:function(e){var t={q:[],qv:[]};return a.each(e,function(e,i){void 0!==e&&""!==e&&(!0===e&&(e="True"),!1===e&&(e="False"),null===e&&(e="None"),t.q.push(i),t.qv.push(e))}),t},reset:function(e,t){return this.allFetched=!1,l.Collection.prototype.reset.call(this,e,t)},order:null,comparators:{update_time:d.default.buildComparator("update_time",{ascending:!1}),"update_time-asc":d.default.buildComparator("update_time",{ascending:!0}),create_time:d.default.buildComparator("create_time",{ascending:!1}),"create_time-asc":d.default.buildComparator("create_time",{ascending:!0})},setOrder:function(e,t){t=t||{};var i=this,n=i.comparators[e];if(a.isUndefined(n))throw new Error("unknown order: "+e);if(n!==i.comparator)return i.order=e,i.comparator=n,t.silent||i.trigger("changed-order",t),i}}),u=c.extend({limitPerPage:500,initialize:function(e,t){c.prototype.initialize.call(this,e,t),this.currentPage=t.currentPage||0},getTotalItemCount:function(){return this.length},shouldPaginate:function(){return this.getTotalItemCount()>=this.limitPerPage},getLastPage:function(){return Math.floor(this.getTotalItemCount()/this.limitPerPage)},getPageCount:function(){return this.getLastPage()+1},getPageLimitOffset:function(e){return e=this.constrainPageNum(e),{limit:this.limitPerPage,offset:e*this.limitPerPage}},constrainPageNum:function(e){return Math.max(0,Math.min(e,this.getLastPage()))},fetchPage:function(e,t){var i=this;return e=i.constrainPageNum(e),i.currentPage=e,t=a.defaults(t||{},i.getPageLimitOffset(e)),i.trigger("fetching-more"),i.fetch(t).always(function(){i.trigger("fetching-more-done")})},fetchCurrentPage:function(e){return this.fetchPage(this.currentPage,e)},fetchPrevPage:function(e){return this.fetchPage(this.currentPage-1,e)},fetchNextPage:function(e){return this.fetchPage(this.currentPage+1,e)}}),h=c.extend({limitOnFirstFetch:null,limitPerFetch:100,initialize:function(e,t){c.prototype.initialize.call(this,e,t),this.limitOnFirstFetch=t.limitOnFirstFetch||this.limitOnFirstFetch,this.limitPerFetch=t.limitPerFetch||this.limitPerFetch,this.allFetched=!1,this.lastFetched=t.lastFetched||0},_buildFetchOptions:function(e){return e.remove=e.remove||!1,c.prototype._buildFetchOptions.call(this,e)},fetchFirst:function(e){return Galaxy.debug("ControlledFetchCollection.fetchFirst:",e),e=e?a.clone(e):{},this.allFetched=!1,this.lastFetched=0,this.fetchMore(a.defaults(e,{reset:!0,limit:this.limitOnFirstFetch}))},fetchMore:function(t){Galaxy.debug("ControlledFetchCollection.fetchMore:",t),t=a.clone(t||{});var i=this;if(Galaxy.debug("fetchMore, options.reset:",t.reset),!t.reset&&i.allFetched)return e.when();t.reset?t.offset=0:void 0===t.offset&&(t.offset=i.lastFetched);var n=t.limit=t.limit||i.limitPerFetch||null;return Galaxy.debug("fetchMore, limit:",n,"offset:",t.offset),i.trigger("fetching-more"),i.fetch(t).always(function(){i.trigger("fetching-more-done")}).done(function(e){var t=a.isArray(e)?e.length:0;i.lastFetched+=t,Galaxy.debug("fetchMore, lastFetched:",i.lastFetched),(!n||t<n)&&(i.allFetched=!0,i.trigger("all-fetched",this))})},fetchAll:function(e){e=e||{};var t=this;return e=a.pick(e,"silent"),e.filters={},t.fetch(e).done(function(){t.allFetched=!0,t.trigger("all-fetched",t)})}});t.default={ControlledFetchCollection:c,PaginatedCollection:u,InfinitelyScrollingCollection:h}}).call(t,i(0))},function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=i(38),o=s(a),l=i(30),r=s(l),d=i(16),c=s(d),u=i(31),h=(s(u),i(40)),f=s(h),p=i(41),m=s(p),g=i(66),_=(s(g),i(36)),v=s(_),w=i(10),y=s(w),b=i(4),x=s(b),$=i(3),C=s($);i(39);var k=o.default.ModelListPanel,S=k.extend({_logNamespace:"history",HDAViewClass:f.default.HDAListItemView,HDCAViewClass:m.default.HDCAListItemView,collectionClass:c.default.HistoryContents,modelCollectionKey:"contents",tagName:"div",className:k.prototype.className+" history-panel",emptyMsg:(0,C.default)("This history is empty"),noneFoundMsg:(0,C.default)("No matching datasets found"),searchPlaceholder:(0,C.default)("search datasets"),initialize:function(e){k.prototype.initialize.call(this,e),this.linkTarget=e.linkTarget||"_blank"},_createDefaultCollection:function(){return new this.collectionClass([],{history:this.model})},freeModel:function(){return k.prototype.freeModel.call(this),this.model&&this.model.stopPolling(),this},_setUpListeners:function(){k.prototype._setUpListeners.call(this),this.on({error:function(e,t,i,n,s){this.errorHandler(e,t,i,n,s)},"views:ready view:attached view:removed":function(e){this._renderSelectButton()},"view:attached":function(e){this.scrollTo(0)}})},loadHistory:function(t,i,n){var s=this;return n=e.extend(n||{silent:!0}),this.info("loadHistory:",t,i,n),this.setModel(new r.default.History({id:t})),n.silent=!0,this.trigger("loading"),this.model.fetchWithContents(i,n).always(function(){s.render(),s.trigger("loading-done")})},refreshContents:function(e){return this.model?this.model.refresh(e):n.when()},_setUpCollectionListeners:function(){return k.prototype._setUpCollectionListeners.call(this),this.listenTo(this.collection,{"fetching-more":function(){this._toggleContentsLoadingIndicator(!0),this.$emptyMessage().hide()},"fetching-more-done":function(){this._toggleContentsLoadingIndicator(!1)}})},_showLoadingIndicator:function(t,i,s){var a=n('<div class="loading-indicator"/>');this.$el.html(a.text(t).slideDown(e.isUndefined(i)?this.fxSpeed:i))},_hideLoadingIndicator:function(t){this.$(".loading-indicator").slideUp(e.isUndefined(t)?this.fxSpeed+200:t,function(){n(this).remove()})},_buildNewRender:function(){var e=k.prototype._buildNewRender.call(this);return this._renderSelectButton(e),e},_renderSelectButton:function(e){if(e=e||this.$el,!this.multiselectActions().length)return null;if(!this.views.length)return this.hideSelectors(),e.find(".controls .actions .show-selectors-btn").remove(),null;var t=e.find(".controls .actions .show-selectors-btn");return t.length?t:(0,y.default)({title:(0,C.default)("Operations on multiple datasets"),classes:"show-selectors-btn",faIcon:"fa-check-square-o"}).prependTo(e.find(".controls .actions"))},_renderEmptyMessage:function(e){var t=this.$emptyMessage(e);return this.model.get("contents_active").active<=0?t.empty().append(this.emptyMsg).show():this.searchFor&&this.model.contents.haveSearchDetails()&&!this.views.length?t.empty().append(this.noneFoundMsg).show():(t.hide(),n())},$scrollContainer:function(e){return this.$list(e)},_toggleContentsLoadingIndicator:function(e){e?this.$list().html('<div class="contents-loading-indicator"><span class="fa fa-2x fa-spinner fa-spin"/></div>'):this.$list().find(".contents-loading-indicator").remove()},renderItems:function(e){e=e||this.$el;var t=this.$list(e);n(".tooltip").remove(),t.empty(),this.views=[];var i=this._filterCollection();return i.length?(this._renderPagination(e),this.views=this._renderSomeItems(i,t)):e.find("> .controls .list-pagination").empty(),this._renderEmptyMessage(e).toggle(!i.length),this.trigger("views:ready",this.views),this.views},_renderPagination:function(e){var t=e.find("> .controls .list-pagination");return this.searchFor||!this.model.contents.shouldPaginate()?t.empty():(t.html(this.templates.pagination({current:this.model.contents.currentPage+1,last:this.model.contents.getLastPage()+1},this)),t.find("select.pages").tooltip(),t)},_renderSomeItems:function(e,t){var i=this,n=[];return t.append(e.map(function(e){var t=i._createItemView(e);return n.push(t),i._renderItemView$el(t)})),n},_filterItem:function(e){var t=this.model.contents;return(t.includeHidden||!e.hidden())&&(t.includeDeleted||!e.isDeletedOrPurged())&&k.prototype._filterItem.call(this,e)},_getItemViewClass:function(e){var t=e.get("history_content_type");switch(t){case"dataset":return this.HDAViewClass;case"dataset_collection":return this.HDCAViewClass}throw new TypeError("Unknown history_content_type: "+t)},_getItemViewOptions:function(t){var i=k.prototype._getItemViewOptions.call(this,t);return e.extend(i,{linkTarget:this.linkTarget,expanded:this.model.contents.storage.isExpanded(t.id),hasUser:this.model.ownedByCurrUser()})},_setUpItemViewListeners:function(e){var t=this;return k.prototype._setUpItemViewListeners.call(t,e),t.listenTo(e,{expanded:function(e){t.model.contents.storage.addExpanded(e.model)},collapsed:function(e){t.model.contents.storage.removeExpanded(e.model)}})},collapseAll:function(){this.model.contents.storage.clearExpanded(),k.prototype.collapseAll.call(this)},getSelectedModels:function(){var e=k.prototype.getSelectedModels.call(this);return e.historyId=this.collection.historyId,e},events:e.extend(e.clone(k.prototype.events),{"click .show-selectors-btn":"toggleSelectors","click > .controls .prev":"_clickPrevPage","click > .controls .next":"_clickNextPage","change > .controls .pages":"_changePageSelect","click .messages [class$=message]":"clearMessages"}),_clickPrevPage:function(e){this.model.stopPolling(),this.model.contents.fetchPrevPage()},_clickNextPage:function(e){this.model.stopPolling(),this.model.contents.fetchNextPage()},_changePageSelect:function(e){this.model.stopPolling();var t=n(e.currentTarget).val();this.model.contents.fetchPage(t)},toggleShowDeleted:function(e,t){e=void 0!==e?e:!this.model.contents.includeDeleted;var i=this.model.contents;return i.setIncludeDeleted(e,t),this.trigger("show-deleted",e),i.fetchCurrentPage({renderAll:!0}),e},toggleShowHidden:function(e,t,i){e=void 0!==e?e:!this.model.contents.includeHidden;var n=this.model.contents;return n.setIncludeHidden(e,i),this.trigger("show-hidden",e),n.fetchCurrentPage({renderAll:!0}),e},_firstSearch:function(e){var t=this;if(this.log("onFirstSearch",e),this.model.contents.haveSearchDetails())return void this.searchItems(e);this.$("> .controls .search-input").searchInput("toggle-loading"),this.searchFor=e;this.model.contents.progressivelyFetchDetails({silent:!0}).progress(function(e,i,n){t.renderItems(),t.trigger("search:loading-progress",i,n)}).always(function(){t.$el.find("> .controls .search-input").searchInput("toggle-loading")}).done(function(){t.searchItems(e,"force")})},clearSearch:function(e){var t=this;return this.searchFor?(this.searchFor="",this.trigger("search:clear",this),this.$("> .controls .search-query").val(""),this.model.contents.fetchCurrentPage({silent:!0}).done(function(){t.renderItems()}),this):this},errorHandler:function(t,i,n){if(!i||0!==i.status||0!==i.readyState){if(this.error(t,i,n),e.isString(t)&&e.isString(i)){var s=t,a=i;return v.default.errorModal(s,a,n)}return i&&502===i.status?v.default.badGatewayErrorModal():v.default.ajaxErrorModal(t,i,n)}},clearMessages:function(t){return(e.isUndefined(t)?this.$messages().children('[class$="message"]'):n(t.currentTarget)).fadeOut(this.fxSpeed,function(){n(this).remove()}),this},scrollToHid:function(t){return this.scrollToItem(e.first(this.viewsWhereModel({hid:t})))},ordinalIndicator:function(e){var t=""+e;switch(t.charAt(t.length-1)){case"1":return t+"st";case"2":return t+"nd";case"3":return t+"rd";default:return t+"th"}},toString:function(){return"HistoryView("+(this.model?this.model.get("name"):"")+")"}});S.prototype.templates=function(){var t=function(){return'<div>\n            <div class="controls"></div>\n            <ul class="list-items"></ul>\n            <div class="empty-message infomessagesmall"></div>\',\n        </div>'},i=x.default.wrapTemplate(['<div class="controls">','<div class="title">','<div class="name"><%- history.name %></div>',"</div>",'<div class="subtitle"></div>','<div class="history-size"><%- history.nice_size %></div>','<div class="actions"></div>','<div class="messages">',"<% if( history.deleted && history.purged ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,C.default)("This history has been purged and deleted"),"</div>","<% } else if( history.deleted ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,C.default)("This history has been deleted"),"</div>","<% } else if( history.purged ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,C.default)("This history has been purged"),"</div>","<% } %>","<% if( history.message ){ %>",'<div class="<%= history.message.level || "info" %>messagesmall">',"<%= history.message.text %>","</div>","<% } %>","</div>",'<div class="tags-display"></div>','<div class="annotation-display"></div>','<div class="search">','<div class="search-input"></div>',"</div>",'<div class="list-actions">','<div class="btn-group">','<button class="select-all btn btn-default"','data-mode="select">',(0,C.default)("All"),"</button>",'<button class="deselect-all btn btn-default"','data-mode="select">',(0,C.default)("None"),"</button>","</div>",'<div class="list-action-menu btn-group">',"</div>","</div>",'<div class="list-pagination form-inline"></div>',"</div>"],"history"),n=x.default.wrapTemplate(['<button class="prev" <%- pages.current === 1 ? "disabled" : "" %>>previous</button>','<select class="pages form-control" ','title="',(0,C.default)("Click to open and select a page. Begin typing a page number to select it"),'">',"<% _.range( 1, pages.last + 1 ).forEach( function( i ){ %>",'<option value="<%- i - 1 %>" <%- i === pages.current ? "selected" : "" %>>',"<%- view.ordinalIndicator( i ) %> of <%- pages.last %> pages","</option>","<% }); %>","</select>",'<button class="next" <%- pages.current === pages.last ? "disabled" : "" %>>next</button>'],"pages");return e.extend(e.clone(k.prototype.templates),{el:t,controls:i,pagination:n})}(),t.default={HistoryView:S}}).call(t,i(1),i(0))},function(e,t,i){"use strict";(function(e){function i(t){return'<span class="label label-info">'+e.escape(t.slice(5))+"</span>"}function n(t){var n=e.filter(e.uniq(t.tags),function(e){return 0===e.indexOf("name:")}),s=e.sortBy(n).map(i);return'\n        <div class="nametags" title="'+n.length+' nametags">\n            '+s.join("")+"\n        </div>"}Object.defineProperty(t,"__esModule",{value:!0}),t.default={nametagTemplate:n}}).call(t,i(1))},function(e,t,i){"use strict";(function(e){function n(e){return e&&e.__esModule?e:{default:e}}function s(e){var t=e.get("collection_type");return"list"==t?(0,f.default)("list"):"paired"==t?(0,f.default)("dataset pair"):"list:paired"==t?(0,f.default)("list of pairs"):(0,f.default)("nested list")}function a(e){var t=e.get("element_count"),i="a "+s(e);if(t){var n;1==t?n="with 1 item":t&&(n="with "+t+" items"),i=i+" "+(0,f.default)(n)}return i}Object.defineProperty(t,"__esModule",{value:!0});var o=i(38),l=n(o),r=i(29),d=(n(r),i(33)),c=n(d),u=i(4),h=(n(u),i(3)),f=n(h),p=l.default.ModelListPanel,m=p.extend({_logNamespace:"collections",className:p.prototype.className+" dataset-collection-panel",DatasetDCEViewClass:c.default.DatasetDCEListItemView,modelCollectionKey:"elements",initialize:function(e){p.prototype.initialize.call(this,e),this.linkTarget=e.linkTarget||"_blank",this.hasUser=e.hasUser,this.panelStack=[],this.parentName=e.parentName,this.foldoutStyle=e.foldoutStyle||"foldout",this.downloadUrl=Galaxy.root+"api/dataset_collections/"+this.model.attributes.id+"/download"},getNestedDCDCEViewClass:function(){return c.default.NestedDCDCEListItemView.extend({foldoutPanelClass:m})},_queueNewRender:function(e,t){t=void 0===t?this.fxSpeed:t;var i=this;this.handleWarning(e),i.log("_queueNewRender:",e,t),i._swapNewRender(e),i.trigger("rendered",i)},handleWarning:function(e){var t=this.views.length,i=this.model.get("element_count");if(i&&i!==t){var n=(0,f.default)("displaying only "+t+" of "+i+" items");e.find(".elements-warning").html('<div class="warningmessagesmall">'+n+"</div>")}},_filterCollection:function(){return this.model.getVisibleContents()},_getItemViewClass:function(e){switch(e.get("element_type")){case"hda":return this.DatasetDCEViewClass;case"dataset_collection":return this.getNestedDCDCEViewClass()}throw new TypeError("Unknown element type:",e.get("element_type"))},_getItemViewOptions:function(t){var i=p.prototype._getItemViewOptions.call(this,t);return e.extend(i,{linkTarget:this.linkTarget,hasUser:this.hasUser,foldoutStyle:this.foldoutStyle})},_setUpItemViewListeners:function(e){var t=this;return p.prototype._setUpItemViewListeners.call(t,e),t.listenTo(e,{"expanded:drilldown":function(e,t){this._expandDrilldownPanel(t)},"collapsed:drilldown":function(e,t){this._collapseDrilldownPanel(t)}}),this},_expandDrilldownPanel:function(e){this.panelStack.push(e),this.$("> .controls").add(this.$list()).hide(),e.parentName=this.model.get("name"),this.$el.append(e.render().$el)},_collapseDrilldownPanel:function(e){this.panelStack.pop(),this.render()},events:{"click .navigation .back":"close"},close:function(e){this.remove(),this.trigger("close")},toString:function(){return"CollectionView("+(this.model?this.model.get("name"):"")+")"}});m.prototype.templates=function(){var t=function(t,i){var n=a(i.model);return'\n        <div class="controls">\n            <div class="navigation">\n            <a class="back" href="javascript:void(0)">\n                <span class="fa fa-icon fa-angle-left"></span>\n                '+(0,f.default)("Back to ")+"\n                "+e.escape(i.parentName)+'\n            </a>\n            </div>\n            <div class="title">\n                <div class="name">'+(e.escape(t.name)||e.escape(t.element_identifier))+'</div>\n                <div class="subtitle">\n                    '+n+'\n                </div>\n            </div>\n            <div class="elements-warning">\n            </div>\n            <div class="tags-display"></div>\n            <div class="actions">\n                <a class="download-btn icon-btn" href="'+i.downloadUrl+'"\n                   title="" download="" data-original-title="Download Collection">\n                   <span class="fa fa-floppy-o"></span>\n                </a>\n            </div>\n        </div>'};return e.extend(e.clone(p.prototype.templates),{controls:t})}(),t.default={collectionTypeDescription:s,collectionDescription:a,CollectionView:m}}).call(t,i(1))},function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=i(8),o=s(a),l=i(17),r=s(l),d=i(22),c=s(d),u=i(61),h=s(u),f=i(10),p=s(f),m=i(4),g=s(m),_=i(3),v=s(_),w=r.default.DatasetListItemView,y=w.extend({initialize:function(e){w.prototype.initialize.call(this,e),this.hasUser=e.hasUser,this.purgeAllowed=e.purgeAllowed||!1,this.tagsEditorShown=e.tagsEditorShown||!1,this.annotationEditorShown=e.annotationEditorShown||!1},_renderPrimaryActions:function(){var e=w.prototype._renderPrimaryActions.call(this);return this.model.get("state")===o.default.NOT_VIEWABLE?e:w.prototype._renderPrimaryActions.call(this).concat([this._renderEditButton(),this._renderDeleteButton()])},_renderEditButton:function(){var t=this;if(this.model.get("state")===o.default.DISCARDED||!this.model.get("accessible"))return null;var i=this.model.get("purged"),n=this.model.get("deleted"),s={title:(0,v.default)("Edit attributes"),href:Galaxy.root+"datasets/edit?dataset_id="+this.model.attributes.id,faIcon:"fa-pencil",classes:"edit-btn",onclick:function(e){Galaxy.router&&(e.preventDefault(),Galaxy.router.push("datasets/edit",{dataset_id:t.model.attributes.id}))}};return n||i?(s.disabled=!0,i?s.title=(0,v.default)("Cannot edit attributes of datasets removed from disk"):n&&(s.title=(0,v.default)("Undelete dataset to edit attributes"))):e.contains([o.default.UPLOAD,o.default.NEW],this.model.get("state"))&&(s.disabled=!0,s.title=(0,v.default)("This dataset is not yet editable")),(0,p.default)(s)},_renderDeleteButton:function(){if(!this.model.get("accessible"))return null;var e=this,t=this.model.isDeletedOrPurged();return(0,p.default)({title:t?(0,v.default)("Dataset is already deleted"):(0,v.default)("Delete"),disabled:t,faIcon:"fa-times",classes:"delete-btn",onclick:function(){e.$el.find(".icon-btn.delete-btn").trigger("mouseout"),e.model.delete()}})},_renderDetails:function(){var t=w.prototype._renderDetails.call(this),i=this.model.get("state");return!this.model.isDeletedOrPurged()&&e.contains([o.default.OK,o.default.FAILED_METADATA],i)&&(this._renderTags(t),this._renderAnnotation(t),this._makeDbkeyEditLink(t)),this._setUpBehaviors(t),t},_renderToolHelpButton:function(){var e=this.model.attributes.dataset_id,t=this.model.attributes.creating_job,i=this,s=function(t){var s='<div id="thdiv-'+e+'" class="toolhelp">';t.name&&t.help?(s+="<strong>Tool help for "+t.name+"</strong><hr/>",s+=t.help):s+="<strong>Tool help is unavailable for this dataset.</strong><hr/>",s+="</div>",i.$el.find(".details").append(n.parseHTML(s))},a=function(e){n.ajax({url:Galaxy.root+"api/tools/"+e.tool_id+"/build"}).done(function(e){s(e)}).fail(function(){s({})})};return null===Galaxy.user.id?null:(0,p.default)({title:(0,v.default)("Tool Help"),classes:"icon-btn",href:"#",faIcon:"fa-question",onclick:function(){i.$el.find(".toolhelp").length>0?i.$el.find(".toolhelp").toggle():n.ajax({url:Galaxy.root+"api/jobs/"+t}).done(function(e){a(e)}).fail(function(){console.log('Failed at recovering job information from the  Galaxy API for job id "'+t+'".')})}})},_renderSecondaryActions:function(){var e=w.prototype._renderSecondaryActions.call(this);switch(this.model.get("state")){case o.default.UPLOAD:case o.default.NOT_VIEWABLE:return e;case o.default.ERROR:return e.unshift(this._renderErrButton()),e.concat([this._renderRerunButton(),this._renderToolHelpButton()]);case o.default.OK:case o.default.FAILED_METADATA:return e.concat([this._renderRerunButton(),this._renderVisualizationsButton(),this._renderToolHelpButton()])}return e.concat([this._renderRerunButton(),this._renderToolHelpButton()])},_renderErrButton:function(){var e=this;return(0,p.default)({title:(0,v.default)("View or report this error"),href:Galaxy.root+"datasets/error?dataset_id="+this.model.attributes.id,classes:"report-error-btn",faIcon:"fa-bug",onclick:function(t){Galaxy.router&&(t.preventDefault(),Galaxy.router.push("datasets/error",{dataset_id:e.model.attributes.id}))}})},_renderRerunButton:function(){var e=this.model.get("creating_job");if(this.model.get("rerunnable"))return(0,p.default)({title:(0,v.default)("Run this job again"),href:this.model.urls.rerun,classes:"rerun-btn",target:this.linkTarget,faIcon:"fa-refresh",onclick:function(t){Galaxy.router&&(t.preventDefault(),Galaxy.router.push("/",{job_id:e}))}})},_renderVisualizationsButton:function(){var t=this.model.get("visualizations");if(this.model.isDeletedOrPurged()||!this.hasUser||!this.model.hasData()||e.isEmpty(t))return null;if(!e.isObject(t[0]))return this.warn("Visualizations have been switched off"),null;var i=n(this.templates.visualizations(t,this));return i.find('[target="galaxy_main"]').attr("target",this.linkTarget),this._addScratchBookFn(i.find(".visualization-link").addBack(".visualization-link")),i},_addScratchBookFn:function(e){e.click(function(e){Galaxy.frame&&Galaxy.frame.active&&(Galaxy.frame.add({title:(0,v.default)("Visualization"),url:n(this).attr("href")}),e.preventDefault(),e.stopPropagation())})},_renderTags:function(e){if(this.hasUser){var t=this;this.tagsEditor=new c.default.TagsEditor({model:this.model,el:e.find(".tags-display"),onshowFirstTime:function(){this.render()},onshow:function(){t.tagsEditorShown=!0},onhide:function(){t.tagsEditorShown=!1},$activator:(0,p.default)({title:(0,v.default)("Edit dataset tags"),classes:"tag-btn",faIcon:"fa-tags"}).appendTo(e.find(".actions .right"))}),this.tagsEditorShown&&this.tagsEditor.toggle(!0)}},_renderAnnotation:function(e){if(this.hasUser){var t=this;this.annotationEditor=new h.default.AnnotationEditor({model:this.model,el:e.find(".annotation-display"),onshowFirstTime:function(){this.render()},onshow:function(){t.annotationEditorShown=!0},onhide:function(){t.annotationEditorShown=!1},$activator:(0,p.default)({title:(0,v.default)("Edit dataset annotation"),classes:"annotate-btn",faIcon:"fa-comment"}).appendTo(e.find(".actions .right"))}),this.annotationEditorShown&&this.annotationEditor.toggle(!0)}},_makeDbkeyEditLink:function(e){if("?"===this.model.get("metadata_dbkey")&&!this.model.isDeletedOrPurged()){var t=n('<a class="value">?</a>').attr("href",this.model.urls.edit).attr("target","_top");e.find(".dbkey .value").replaceWith(t)}},events:e.extend(e.clone(w.prototype.events),{"click .undelete-link":"_clickUndeleteLink","click .purge-link":"_clickPurgeLink","click .edit-btn":function(e){this.trigger("edit",this,e)},"click .delete-btn":function(e){this.trigger("delete",this,e)},"click .rerun-btn":function(e){this.trigger("rerun",this,e)},"click .report-err-btn":function(e){this.trigger("report-err",this,e)},"click .visualization-btn":function(e){this.trigger("visualize",this,e)},"click .dbkey a":function(e){this.trigger("edit",this,e)}}),_clickUndeleteLink:function(e){return this.model.undelete(),!1},_clickPurgeLink:function(e){return confirm((0,v.default)("This will permanently remove the data in your dataset. Are you sure?"))&&this.model.purge(),!1},toString:function(){return"HDAEditView("+(this.model?""+this.model:"(no model)")+")"}});y.prototype.templates=function(){var t=e.extend({},w.prototype.templates.warnings,{failed_metadata:g.default.wrapTemplate(['<% if( dataset.state === "failed_metadata" ){ %>','<div class="failed_metadata-warning warningmessagesmall">',(0,v.default)("An error occurred setting the metadata for this dataset"),'<br /><a href="<%- dataset.urls.edit %>" target="_top">',(0,v.default)("Set it manually or retry auto-detection"),"</a>","</div>","<% } %>"],"dataset"),deleted:g.default.wrapTemplate(["<% if( dataset.deleted && !dataset.purged ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,v.default)("This dataset has been deleted"),'<br /><a class="undelete-link" href="javascript:void(0);">',(0,v.default)("Undelete it"),"</a>","<% if( view.purgeAllowed ){ %>",'<br /><a class="purge-link" href="javascript:void(0);">',(0,v.default)("Permanently remove it from disk"),"</a>","<% } %>","</div>","<% } %>"],"dataset")}),i=g.default.wrapTemplate(["<% if( visualizations.length === 1 ){ %>",'<a class="visualization-link icon-btn" href="<%- visualizations[0].href %>"',' target="<%- visualizations[0].target %>" title="',(0,v.default)("Visualize in"),' <%- visualizations[0].html %>">','<span class="fa fa-bar-chart-o"></span>',"</a>","<% } else { %>",'<div class="visualizations-dropdown dropdown icon-btn">','<a data-toggle="dropdown" title="',(0,v.default)("Visualize"),'">','<span class="fa fa-bar-chart-o"></span>',"</a>",'<ul class="dropdown-menu" role="menu">',"<% _.each( visualizations, function( visualization ){ %>",'<li><a class="visualization-link" href="<%- visualization.href %>"',' target="<%- visualization.target %>">',"<%- visualization.html %>","</a></li>","<% }); %>","</ul>","</div>","<% } %>"],"visualizations");return e.extend({},w.prototype.templates,{warnings:t,visualizations:i})}(),t.default={DatasetListItemEdit:y}}).call(t,i(1),i(0))},function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=i(4),o=s(a),l=i(3),r=s(l);i(15);var d=e.View.extend(o.default.LoggableMixin).extend(o.default.HiddenUntilActivatedViewMixin).extend({tagName:"div",className:"annotation-display",initialize:function(e){e=e||{},this.tooltipConfig=e.tooltipConfig||{placement:"bottom"},this.listenTo(this.model,"change:annotation",function(){this.render()}),this.hiddenUntilActivated(e.$activator,e)},render:function(){var e=this;return this.$el.html(this._template()),this.$annotation().make_text_editable({use_textarea:!0,on_finish:function(t){e.$annotation().text(t),e.model.save({annotation:t},{silent:!0}).fail(function(){e.$annotation().text(e.model.previous("annotation"))})}}),this},_template:function(){var e=this.model.get("annotation");return['<label class="prompt">',(0,r.default)("Annotation"),"</label>",'<div class="annotation">',n.escape(e),"</div>"].join("")},$annotation:function(){return this.$el.find(".annotation")},remove:function(){this.$annotation.off(),this.stopListening(this.model),e.View.prototype.remove.call(this)},toString:function(){return["AnnotationEditor(",""+this.model,")"].join("")}});t.default={AnnotationEditor:d}}).call(t,i(2),i(1))},,,,,,,,,function(e,t,i){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var n=i(2),s=function(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var i in e)Object.prototype.hasOwnProperty.call(e,i)&&(t[i]=e[i]);return t.default=e,t}(n),a=i(32),o=function(e){return e&&e.__esModule?e:{default:e}}(a),l=["new","queued","running"],r=["error","deleted"],d=s.Model.extend({url:function(){return Galaxy.root+"api/histories/"+this.attributes.history_id+"/contents/dataset_collections/"+this.attributes.collection_id+"/jobs_summary"},hasDetails:function(){return this.has("populated_state")},new:function(){return!this.hasDetails()||"new"==this.get("populated_state")},errored:function(){return"error"===this.get("populated_state")||this.anyWithStates(r)},states:function(){return this.get("states")||{}},anyWithState:function(e){return(this.states()[e]||0)>0},anyWithStates:function(e){var t=this.states();for(var i in e)if((t[e[i]]||0)>0)return!0;return!1},numWithStates:function(e){var t=this.states(),i=0;for(var n in e)i+=t[e[n]]||0;return i},numInError:function(){return this.numWithStates(r)},running:function(){return this.anyWithState("running")},terminal:function(){return!this.new()&&!this.anyWithStates(l)},jobCount:function(){var e=this.states(),t=0;for(var i in e)t+=e[i];return t},toString:function(){return"JobStatesSummary(id="+this.get("id")+")"}}),c=s.Collection.extend({model:d,initialize:function(){this.updateTimeoutId=null,this.active=!0},url:function(){var e=this.models.filter(function(e){return!e.terminal()}),t=e.map(function(e){return e.get("id")}).join(","),i=e.map(function(e){return e.get("model")}).join(",");return Galaxy.root+"api/histories/"+this.historyId+"/jobs_summary?ids="+t+"&types="+i},monitor:function(){var e=this;if(this.clearUpdateTimeout(),this.active){var t=function(){e.updateTimeoutId=setTimeout(function(){e.monitor()},2e3)},i=this.models.filter(function(e){return!e.terminal()});if(i.length,!1){var n=i.map(function(e){return function(){return e.fetch()}});return new o.default.AjaxQueue(n).done(t)}i.length>0?this.fetch({remove:!1}).done(t):t()}},clearUpdateTimeout:function(){this.updateTimeoutId&&(clearTimeout(this.updateTimeoutId),this.updateTimeoutId=null)},toString:function(){return"JobStatesSummaryCollection()"}});t.default={JobStatesSummary:d,JobStatesSummaryCollection:c,FETCH_STATE_ON_ADD:!1}},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(57),l=a(o),r=i(16),d=(a(r),i(8)),c=(a(d),i(37)),u=a(c),h=i(72),f=a(h),p=i(96),m=a(p),g=i(22),_=a(g),v=i(61),w=a(v),y=i(28),b=a(y),x=i(73),$=a(x),C=i(74),k=a(C),S=i(10),T=a(S),P=i(47),D=(a(P),i(4)),E=a(D),A=i(3),M=a(A);i(15);var I=l.default.HistoryView,O=I.extend({HDAViewClass:f.default.HDAListItemEdit,HDCAViewClass:m.default.HDCAListItemEdit,initialize:function(e){e=e||{},I.prototype.initialize.call(this,e),this.tagsEditor=null,this.dragItems=!0,this.annotationEditor=null,this.purgeAllowed=e.purgeAllowed||!1,this.annotationEditorShown=e.annotationEditorShown||!1,this.tagsEditorShown=e.tagsEditorShown||!1},_setUpListeners:function(){return I.prototype._setUpListeners.call(this),this.on({"droptarget:drop":function(e,t){this.dataDropped(t),this.dropTargetOff()},"view:attached view:removed":function(){this._renderCounts()},"search:loading-progress":this._renderSearchProgress,"search:searching":this._renderSearchFindings})},_setUpModelListeners:function(){return I.prototype._setUpModelListeners.call(this),this.listenTo(this.model,"change:size",this.updateHistoryDiskSize),this},_setUpCollectionListeners:function(){return I.prototype._setUpCollectionListeners.call(this),this.listenTo(this.collection,{"change:deleted":this._handleItemDeletedChange,"change:visible":this._handleItemVisibleChange,"change:purged":function(e){this.model.fetch()},"fetching-deleted":function(e){this.$("> .controls .deleted-count").html("<i>"+(0,M.default)("loading...")+"</i>")},"fetching-hidden":function(e){this.$("> .controls .hidden-count").html("<i>"+(0,M.default)("loading...")+"</i>")},"fetching-deleted-done fetching-hidden-done":this._renderCounts}),this},_buildNewRender:function(){var e=I.prototype._buildNewRender.call(this);return this.model?(Galaxy&&Galaxy.user&&Galaxy.user.id&&Galaxy.user.id===this.model.get("user_id")&&(this._renderTags(e),this._renderAnnotation(e)),e):e},updateHistoryDiskSize:function(){this.$(".history-size").text(this.model.get("nice_size"))},renderItems:function(e){var t=I.prototype.renderItems.call(this,e);return this.searchFor?this._renderSearchFindings(e):this._renderCounts(e),t},_renderCounts:function(t){t=t instanceof e?t:this.$el;var i=this.templates.counts(this.model.toJSON(),this);return t.find("> .controls .subtitle").html(i)},_renderTags:function(e){var t=this;this.tagsEditor=new _.default.TagsEditor({model:this.model,el:e.find(".controls .tags-display"),onshowFirstTime:function(){this.render()},onshow:function(){t.toggleHDATagEditors(!0,t.fxSpeed)},onhide:function(){t.toggleHDATagEditors(!1,t.fxSpeed)},$activator:(0,T.default)({title:(0,M.default)("Edit history tags"),classes:"history-tag-btn",faIcon:"fa-tags"}).appendTo(e.find(".controls .actions"))})},_renderAnnotation:function(e){var t=this;this.annotationEditor=new w.default.AnnotationEditor({model:this.model,el:e.find(".controls .annotation-display"),onshowFirstTime:function(){this.render()},onshow:function(){t.toggleHDAAnnotationEditors(!0,t.fxSpeed)},onhide:function(){t.toggleHDAAnnotationEditors(!1,t.fxSpeed)},$activator:(0,T.default)({title:(0,M.default)("Edit history annotation"),classes:"history-annotate-btn",faIcon:"fa-comment"}).appendTo(e.find(".controls .actions"))})},_setUpBehaviors:function(e){if(e=e||this.$el,I.prototype._setUpBehaviors.call(this,e),this.model&&Galaxy.user&&!Galaxy.user.isAnonymous()&&Galaxy.user.id===this.model.get("user_id")){var t=this;e.find("> .controls .name").attr("title",(0,M.default)("Click to rename history")).tooltip({placement:"bottom"}).make_text_editable({on_finish:function(e){var i=t.model.get("name");e&&e!==i?(t.$el.find("> .controls .name").text(e),t.model.save({name:e}).fail(function(){t.$el.find("> .controls .name").text(t.model.previous("name"))})):t.$el.find("> .controls .name").text(i)}})}},multiselectActions:function(){var e=this,t=[{html:(0,M.default)("Hide datasets"),func:function(){var t=u.default.HistoryDatasetAssociation.prototype.hide;e.getSelectedModels().ajaxQueue(t)}},{html:(0,M.default)("Unhide datasets"),func:function(){var t=u.default.HistoryDatasetAssociation.prototype.unhide;e.getSelectedModels().ajaxQueue(t)}},{html:(0,M.default)("Delete datasets"),func:function(){var t=u.default.HistoryDatasetAssociation.prototype.delete;e.getSelectedModels().ajaxQueue(t)}},{html:(0,M.default)("Undelete datasets"),func:function(){var t=u.default.HistoryDatasetAssociation.prototype.undelete;e.getSelectedModels().ajaxQueue(t)}}];return e.purgeAllowed&&t.push({html:(0,M.default)("Permanently delete datasets"),func:function(){if(confirm((0,M.default)("This will permanently remove the data in your datasets. Are you sure?"))){var t=u.default.HistoryDatasetAssociation.prototype.purge;e.getSelectedModels().ajaxQueue(t)}}}),t=t.concat(e._collectionActions())},_collectionActions:function(){var e=this;return[{html:(0,M.default)("Build Dataset List"),func:function(){e.buildCollection("list")}},{html:(0,M.default)("Build Dataset Pair"),func:function(){e.buildCollection("paired")}},{html:(0,M.default)("Build List of Dataset Pairs"),func:function(){e.buildCollection("list:paired")}}]},buildCollection:function(e,t,i){var n,s=this,t=t||s.getSelectedModels(),i=i||!1;"list"==e?n=b.default.createListCollection:"paired"==e?n=$.default.createPairCollection:"list:paired"==e?n=k.default.createListOfPairsCollection:console.warn("Unknown collectionType encountered "+e),n(t,i).done(function(){s.model.refresh()})},_getItemViewOptions:function(e){var t=I.prototype._getItemViewOptions.call(this,e);return n.extend(t,{purgeAllowed:this.purgeAllowed,tagsEditorShown:this.tagsEditor&&!this.tagsEditor.hidden,annotationEditorShown:this.annotationEditor&&!this.annotationEditor.hidden}),t},_handleItemDeletedChange:function(e){e.get("deleted")?this._handleItemDeletion(e):this._handleItemUndeletion(e),this._renderCounts()},_handleItemDeletion:function(e){var t=this.model.get("contents_active");t.deleted+=1,t.active-=1,this.model.contents.includeDeleted||this.removeItemView(e),this.model.set("contents_active",t)},_handleItemUndeletion:function(e){var t=this.model.get("contents_active");t.deleted-=1,this.model.contents.includeDeleted||(t.active-=1),this.model.set("contents_active",t)},_handleItemVisibleChange:function(e){e.hidden()?this._handleItemHidden(e):this._handleItemUnhidden(e),this._renderCounts()},_handleItemHidden:function(e){var t=this.model.get("contents_active");t.hidden+=1,t.active-=1,this.model.contents.includeHidden||this.removeItemView(e),this.model.set("contents_active",t)},_handleItemUnhidden:function(e){var t=this.model.get("contents_active");t.hidden-=1,this.model.contents.includeHidden||(t.active-=1),this.model.set("contents_active",t)},toggleHDATagEditors:function(e,t){n.each(this.views,function(i){i.tagsEditor&&i.tagsEditor.toggle(e,t)})},toggleHDAAnnotationEditors:function(e,t){n.each(this.views,function(i){i.annotationEditor&&i.annotationEditor.toggle(e,t)})},events:n.extend(n.clone(I.prototype.events),{"click .show-selectors-btn":"toggleSelectors","click .toggle-deleted-link":function(e){this.toggleShowDeleted()},"click .toggle-hidden-link":function(e){this.toggleShowHidden()}}),_renderSearchProgress:function(e,t){var i=e+t;return this.$("> .controls .subtitle").html(["<i>",(0,M.default)("Searching "),i,"/",this.model.contentsShown(),"</i>"].join(""))},_renderSearchFindings:function(t){t=t instanceof e?t:this.$el;var i=this.templates.found(this.model.toJSON(),this);return t.find("> .controls .subtitle").html(i),this},dropTargetOn:function(){if(this.dropTarget)return this;this.dropTarget=!0;var e={dragenter:n.bind(this.dragenter,this),dragover:n.bind(this.dragover,this),dragleave:n.bind(this.dragleave,this),drop:n.bind(this.drop,this)},t=this._renderDropTarget();this.$list().before([this._renderDropTargetHelp(),t]);for(var i in e)e.hasOwnProperty(i)&&t.on(i,e[i]);return this},_renderDropTarget:function(){return this.$(".history-drop-target").remove(),s("<div/>").addClass("history-drop-target")},_renderDropTargetHelp:function(){return this.$(".history-drop-target-help").remove(),s("<div/>").addClass("history-drop-target-help").text((0,M.default)("Drag datasets here to copy them to the current history"))},dropTargetOff:function(){if(!this.dropTarget)return this;this.dropTarget=!1;var e=this.$(".history-drop-target").get(0);for(var t in 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n.isObject(t)&&"HistoryDatasetAssociation"===t.model_class&&t.id?0!==i.contents.currentPage?i.contents.fetchPage(0).then(function(){return i.model.contents.copy(t.id)}):i.model.contents.copy(t.id):e.when()},toString:function(){return"HistoryViewEdit("+(this.model?this.model.get("name"):"")+")"}});O.prototype.templates=function(){var e=E.default.wrapTemplate(["<% var shown = Math.max( view.views.length, history.contents_active.active ) %>","<% if( shown ){ %>",'<span class="shown-count">',"<%- shown %> ",(0,M.default)("shown"),"</span>","<% } %>","<% if( history.contents_active.deleted ){ %>",'<span class="deleted-count">',"<% if( view.model.contents.includeDeleted ){ %>",'<a class="toggle-deleted-link" href="javascript:void(0);">',(0,M.default)("hide deleted"),"</a>","<% } else { %>","<%- history.contents_active.deleted %> ",'<a class="toggle-deleted-link" href="javascript:void(0);">',(0,M.default)("deleted"),"</a>","<% } %>","</span>","<% } %>","<% if( history.contents_active.hidden ){ %>",'<span class="hidden-count">',"<% if( view.model.contents.includeHidden ){ %>",'<a class="toggle-hidden-link" href="javascript:void(0);">',(0,M.default)("hide hidden"),"</a>","<% } else { %>","<%- history.contents_active.hidden %> ",'<a class="toggle-hidden-link" href="javascript:void(0);">',(0,M.default)("hidden"),"</a>","<% } %>","</span>","<% } %>"],"history"),t=E.default.wrapTemplate([(0,M.default)("Found")," <%- view.views.length %>, ","<% if( history.contents_active.deleted ){ %>","<% if( view.model.contents.includeDeleted ){ %>",'<a class="toggle-deleted-link" href="javascript:void(0);">',(0,M.default)("hide deleted"),"</a>, ","<% } else { %>",'<a class="toggle-deleted-link" href="javascript:void(0);">',(0,M.default)("show deleted"),"</a>, ","<% } %>","<% } %>","<% if( history.contents_active.hidden ){ %>","<% if( view.model.contents.includeHidden ){ %>",'<a class="toggle-hidden-link" href="javascript:void(0);">',(0,M.default)("hide hidden"),"</a>","<% } else { %>",'<a class="toggle-hidden-link" href="javascript:void(0);">',(0,M.default)("show hidden"),"</a>","<% } %>","<% } %>"],"history");return n.extend(n.clone(I.prototype.templates),{counts:e,found:t})}(),t.default={HistoryViewEdit:O}}).call(t,i(0),i(1),i(0))},function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=i(60),o=s(a),l=i(40),r=s(l),d=i(4),c=s(d),u=i(3),h=s(u),f=o.default.DatasetListItemEdit,p=f.extend({className:f.prototype.className+" history-content",_fetchModelDetails:function(){var t=this;return t.model.inReadyState()&&!t.model.hasDetails()?t.model.fetch({silent:!0}):t.model.has("rerunnable")?e.when():t.model.fetch({silent:!0,data:{keys:["rerunnable","creating_job"].join(",")}})},events:n.extend(n.clone(f.prototype.events),{"click .unhide-link":function(e){return this.model.unhide(),!1}}),toString:function(){return"HDAListItemEdit("+(this.model?""+this.model:"(no 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If your file is not detected properly as one of the known formats, it most likely means that it has some format problems (e.g., different number of columns on different rows). You can still coerce the system to set your data to the format you think it should be.  You can also upload compressed files, which will automatically be decompressed."}},list_extensions:[],list_genomes:[],initialize:function(e){var t=this;this.options=l.default.merge(e,this.options),this.ui_button=new f.default.View({onclick:function(e){e.preventDefault(),t.show()},onunload:function(){var e=t.ui_button.model.get("percentage",0);if(e>0&&e<100)return"Several uploads are queued."}}),this.setElement(this.ui_button.$el);var t=this;l.default.get({url:Galaxy.root+"api/datatypes?extension_only=False",success:function(e){for(var i in e)t.list_extensions.push({id:e[i].extension,text:e[i].extension,description:e[i].description,description_url:e[i].description_url,composite_files:e[i].composite_files});t.list_extensions.sort(function(e,t){var i=e.text&&e.text.toLowerCase(),n=t.text&&t.text.toLowerCase();return i>n?1:i<n?-1:0}),t.options.datatypes_disable_auto||t.list_extensions.unshift(t.options.auto)}}),l.default.get({url:Galaxy.root+"api/genomes",success:function(e){for(var i in e)t.list_genomes.push({id:e[i][1],text:e[i][0]});t.list_genomes.sort(function(e,i){return e.id==t.options.default_genome?-1:i.id==t.options.default_genome?1:e.text>i.text?1:e.text<i.text?-1:0})}})},show:function(){var e=this;if(!Galaxy.currHistoryPanel||!Galaxy.currHistoryPanel.model)return void window.setTimeout(function(){e.show()},500);this.current_user=Galaxy.user.id,this.modal||(this.tabs=new u.default.View,this.default_view=new m.default(this),this.tabs.add({id:"regular",title:(0,a.default)("Regular"),$el:this.default_view.$el}),this.composite_view=new _.default(this),this.tabs.add({id:"composite",title:(0,a.default)("Composite"),$el:this.composite_view.$el}),this.collection_view=new w.default(this),this.tabs.add({id:"collection",title:(0,a.default)("Collection"),$el:this.collection_view.$el}),this.modal=new d.default.View({title:(0,a.default)("Download from web or upload from disk"),body:this.tabs.$el,height:this.options.height,width:this.options.width,closing_events:!0,title_separator:!1})),this.modal.show()},currentHistory:function(){return this.current_user&&Galaxy.currHistoryPanel.model.get("id")},currentFtp:function(){return this.current_user&&this.options.ftp_upload_site},toData:function(e,t){var i={payload:{tool_id:"upload1",history_id:t||this.currentHistory(),inputs:{}},files:[],error_message:null};if(e&&e.length>0){var n={file_count:e.length,dbkey:e[0].get("genome","?"),file_type:e[0].get("extension","auto")};for(var s in e){var a=e[s];if(a.set("status","running"),!(a.get("file_size")>0)){i.error_message="Upload content incomplete.",a.set("status","error"),a.set("info",i.error_message);break}var o="files_"+s+"|";switch(n[o+"type"]="upload_dataset",n[o+"space_to_tab"]=a.get("space_to_tab")&&"Yes"||null,n[o+"to_posix_lines"]=a.get("to_posix_lines")&&"Yes"||null,n[o+"dbkey"]=a.get("genome",null),n[o+"file_type"]=a.get("extension",null),a.get("file_mode")){case"new":n[o+"url_paste"]=a.get("url_paste");break;case"ftp":n[o+"ftp_files"]=a.get("file_path");break;case"local":i.files.push({name:o+"file_data",file:a.get("file_data")})}}i.payload.inputs=JSON.stringify(n)}return i}})}).call(t,i(2))},function(e,t,i){"use strict";(function(e,n){Object.defineProperty(t,"__esModule",{value:!0});var s=i(3),a=function(e){return e&&e.__esModule?e:{default:e}}(s),o=e.View.extend({initialize:function(t){var i=this;this.model=t&&t.model||new e.Model({icon:"fa-upload",tooltip:(0,a.default)("Download from URL or upload files from disk"),label:"Load Data",percentage:0,status:"",onunload:function(){},onclick:function(){}}).set(t),this.setElement(this._template()),this.$progress=this.$(".progress-bar"),this.listenTo(this.model,"change",this.render,this),this.render(),n(window).on("beforeunload",function(){return i.model.get("onunload")()})},render:function(){var e=this.model.attributes;this.$el.off("click").on("click",function(t){e.onclick(t)}).tooltip({title:this.model.get("tooltip"),placement:"bottom"}),this.$progress.removeClass().addClass("progress-bar").addClass("progress-bar-notransition").addClass(""!=e.status&&"progress-bar-"+e.status).css({width:e.percentage+"%"})},_template:function(){return'<div class="upload-button"><div class="progress"><div class="progress-bar"/><a class="panel-header-button" href="javascript:void(0)" id="tool-panel-upload-button"><span class="fa fa-upload"/></a></div></div>'}});t.default={View:o}}).call(t,i(2),i(0))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(3),l=a(o),r=i(5),d=(a(r),i(49)),c=a(d),u=i(256),h=a(u),f=i(91),p=a(f),m=i(92),g=a(m),_=i(27),v=a(_),w=i(12),y=a(w),b=i(6),x=a(b),$=i(257),C=a($);i(93),t.default=e.View.extend({upload_size:0,collection:new c.default.Collection,counter:{announce:0,success:0,error:0,running:0,reset:function(){this.announce=this.success=this.error=this.running=0}},initialize:function(e){var t=this;this.app=e,this.options=e.options,this.list_extensions=e.list_extensions,this.list_genomes=e.list_genomes,this.ui_button=e.ui_button,this.ftp_upload_site=e.currentFtp(),this.setElement(this._template()),this.$uploadbox=this.$(".upload-box"),this.$uploadtable=this.$(".upload-table"),this.btnLocal=new x.default.Button({id:"btn-local",title:(0,l.default)("Choose local file"),onclick:function(){t.uploadbox.select()},icon:"fa fa-laptop"}),this.btnFtp=new x.default.Button({id:"btn-ftp",title:(0,l.default)("Choose FTP file"),onclick:function(){t._eventFtp()},icon:"fa fa-folder-open-o"}),this.btnCreate=new x.default.Button({id:"btn-new",title:"Paste/Fetch data",onclick:function(){t._eventCreate()},icon:"fa fa-edit"}),this.btnStart=new x.default.Button({id:"btn-start",title:(0,l.default)("Start"),onclick:function(){t._eventStart()}}),this.btnStop=new x.default.Button({id:"btn-stop",title:(0,l.default)("Pause"),onclick:function(){t._eventStop()}}),this.btnReset=new x.default.Button({id:"btn-reset",title:(0,l.default)("Reset"),onclick:function(){t._eventReset()}}),this.btnClose=new x.default.Button({id:"btn-close",title:(0,l.default)("Close"),onclick:function(){t.app.modal.hide()}}),n.each([this.btnLocal,this.btnFtp,this.btnCreate,this.btnStop,this.btnReset,this.btnStart,this.btnClose],function(e){t.$(".upload-buttons").prepend(e.$el)}),this.uploadbox=this.$uploadbox.uploadbox({url:this.app.options.nginx_upload_path,announce:function(e,i){t._eventAnnounce(e,i)},initialize:function(e){return t.app.toData([t.collection.get(e)],t.history_id)},progress:function(e,i){t._eventProgress(e,i)},success:function(e,i){t._eventSuccess(e,i)},error:function(e,i){t._eventError(e,i)},complete:function(){t._eventComplete()},ondragover:function(){t.$uploadbox.addClass("highlight")},ondragleave:function(){t.$uploadbox.removeClass("highlight")}}),this.ftp=new v.default.View({title:(0,l.default)("FTP files"),container:this.btnFtp.$el}),this.select_extension=new y.default.View({css:"upload-footer-selection",container:this.$(".upload-footer-extension"),data:n.filter(this.list_extensions,function(e){return!e.composite_files}),value:this.options.default_extension,onchange:function(e){t._changeExtension(e)}}),this.$(".upload-footer-extension-info").on("click",function(e){new g.default({$el:s(e.target),title:t.select_extension.text(),extension:t.select_extension.value(),list:t.list_extensions,placement:"top"})}).on("mousedown",function(e){e.preventDefault()}),this.select_genome=new y.default.View({css:"upload-footer-selection",container:this.$(".upload-footer-genome"),data:this.list_genomes,value:this.options.default_genome,onchange:function(e){t._changeGenome(e)}}),this.loader=new C.default({$container:this.$uploadbox,collection:this.collection,new_content:function(e){var i=new h.default(t,{model:e});return t.$uploadtable.find("> tbody:first").append(i.$el),i.render(),i}}),this.collection.on("remove",function(e){t._eventRemove(e)}),this.render()},render:function(){var e="";e=0==this.counter.announce?this.uploadbox.compatible()?"&nbsp;":"Browser does not support Drag & Drop. Try Firefox 4+, Chrome 7+, IE 10+, Opera 12+ or Safari 6+.":0==this.counter.running?"You added "+this.counter.announce+" file(s) to the queue. Add more files or click 'Start' to proceed.":"Please wait..."+this.counter.announce+" out of "+this.counter.running+" remaining.",this.$(".upload-top-info").html(e);var t=0==this.counter.running&&this.counter.announce+this.counter.success+this.counter.error>0,i=0==this.counter.running&&this.counter.announce>0,n=0==this.counter.running,s=this.counter.announce+this.counter.success+this.counter.error>0;this.btnReset[t?"enable":"disable"](),this.btnStart[i?"enable":"disable"](),this.btnStart.$el[i?"addClass":"removeClass"]("btn-primary"),this.btnStop[this.counter.running>0?"enable":"disable"](),this.btnLocal[n?"enable":"disable"](),this.btnFtp[n?"enable":"disable"](),this.btnCreate[n?"enable":"disable"](),this.btnFtp.$el[this.ftp_upload_site?"show":"hide"](),this.$(".upload-table")[s?"show":"hide"](),this.$(".upload-helper")[s?"hide":"show"]()},_eventAnnounce:function(e,t){this.counter.announce++;var i=new c.default.Model({id:e,file_name:t.name,file_size:t.size,file_mode:t.mode||"local",file_path:t.path,file_data:t});this.render(),this.collection.add(i)},_eventProgress:function(e,t){var i=this.collection.get(e);i.set("percentage",t),this.ui_button.model.set("percentage",this._uploadPercentage(t,i.get("file_size")))},_eventSuccess:function(e,t){var i=this.collection.get(e);i.set({percentage:100,status:"success"}),this.ui_button.model.set("percentage",this._uploadPercentage(100,i.get("file_size"))),this.upload_completed+=100*i.get("file_size"),this.counter.announce--,this.counter.success++,this.render(),Galaxy.currHistoryPanel.refreshContents()},_eventError:function(e,t){var i=this.collection.get(e);i.set({percentage:100,status:"error",info:t}),this.ui_button.model.set({percentage:this._uploadPercentage(100,i.get("file_size")),status:"danger"}),this.upload_completed+=100*i.get("file_size"),this.counter.announce--,this.counter.error++,this.render()},_eventComplete:function(){this.collection.each(function(e){"queued"==e.get("status")&&e.set("status","init")}),this.counter.running=0,this.render()},_eventRemove:function(e){var t=e.get("status");"success"==t?this.counter.success--:"error"==t?this.counter.error--:this.counter.announce--,this.uploadbox.remove(e.id),this.render()},_eventFtp:function(){if(this.ftp.visible)this.ftp.hide();else{this.ftp.empty();var e=this;this.ftp.append(new p.default({collection:this.collection,ftp_upload_site:this.ftp_upload_site,onadd:function(t){return e.uploadbox.add([{mode:"ftp",name:t.path,size:t.size,path:t.path}])},onremove:function(t){e.collection.remove(t)}}).$el),this.ftp.show()}},_eventCreate:function(){this.uploadbox.add([{name:"New File",size:0,mode:"new"}])},_eventStart:function(){if(0!=this.counter.announce&&0==this.counter.running){var e=this;this.upload_size=0,this.upload_completed=0,this.collection.each(function(t){"init"==t.get("status")&&(t.set("status","queued"),e.upload_size+=t.get("file_size"))}),this.ui_button.model.set({percentage:0,status:"success"}),this.counter.running=this.counter.announce,this.history_id=this.app.currentHistory(),this._uploadFtp(),this.uploadbox.start(),this.render()}},_eventStop:function(){this.counter.running>0&&(this.ui_button.model.set("status","info"),s(".upload-top-info").html("Queue will pause after completing the current file..."),this.uploadbox.stop())},_eventReset:function(){if(0==this.counter.running){this.collection.reset(),this.counter.reset(),this.uploadbox.reset(),this.select_extension.value(this.options.default_extension),this.select_genome.value(this.options.default_genome),this.ui_button.model.set("percentage",0),this.render()}},_changeExtension:function(e,t){var i=this;this.collection.each(function(n){"init"!=n.get("status")||n.get("extension")!=i.options.default_extension&&t||n.set("extension",e)})},_changeGenome:function(e,t){var i=this;this.collection.each(function(n){"init"!=n.get("status")||n.get("genome")!=i.options.default_genome&&t||n.set("genome",e)})},_uploadFtp:function(){var e=this,t=[];this.collection.each(function(i){"queued"==i.get("status")&&"ftp"==i.get("file_mode")&&(e.uploadbox.remove(i.id),t.push(i))}),t.length>0&&s.uploadpost({data:this.app.toData(t),url:this.app.options.nginx_upload_path,success:function(i){n.each(t,function(t){e._eventSuccess(t.id)})},error:function(i){n.each(t,function(t){e._eventError(t.id,i)})}})},_uploadPercentage:function(e,t){return(this.upload_completed+e*t)/this.upload_size},_template:function(){return'<div class="upload-view-default"><div class="upload-top"><h6 class="upload-top-info"/></div><div class="upload-box"><div class="upload-helper"><i class="fa fa-files-o"/>Drop files here</div><table class="upload-table ui-table-striped" style="display: none;"><thead><tr><th>Name</th><th>Size</th><th>Type</th><th>Genome</th><th>Settings</th><th>Status</th><th/></tr></thead><tbody/></table></div><div class="upload-footer"><span class="upload-footer-title">Type (set all):</span><span class="upload-footer-extension"/><span class="upload-footer-extension-info upload-icon-button fa fa-search"/> <span class="upload-footer-title">Genome (set all):</span><span class="upload-footer-genome"/></div><div class="upload-buttons"/></div>'}})}).call(t,i(2),i(1),i(0))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(3),l=a(o),r=i(5),d=a(r),c=i(49),u=(a(c),i(90)),h=a(u),f=i(27),p=a(f),m=i(12),g=a(m);t.default=e.View.extend({status_classes:{init:"upload-icon-button fa fa-trash-o",queued:"upload-icon fa fa-spinner fa-spin",running:"upload-icon fa fa-spinner fa-spin",success:"upload-icon-button fa fa-check",error:"upload-icon-button fa fa-exclamation-triangle"},initialize:function(e,t){var i=this;this.app=e,this.model=t.model,this.setElement(this._template(t.model)),this.$mode=this.$(".upload-mode"),this.$title=this.$(".upload-title"),this.$text=this.$(".upload-text"),this.$size=this.$(".upload-size"),this.$info_text=this.$(".upload-info-text"),this.$info_progress=this.$(".upload-info-progress"),this.$text_content=this.$(".upload-text-content"),this.$settings=this.$(".upload-settings"),this.$symbol=this.$(".upload-symbol"),this.$progress_bar=this.$(".upload-progress-bar"),this.$percentage=this.$(".upload-percentage"),this.settings=new p.default.View({title:(0,l.default)("Upload configuration"),container:this.$(".upload-settings"),placement:"bottom"});var s=this.app.select_genome.value(),a=this.app.select_extension.value();this.select_genome=new g.default.View({css:"upload-genome",data:i.app.list_genomes,container:this.$(".upload-genome"),value:s,onchange:function(e){i.model.set("genome",e)}}),this.select_extension=new g.default.View({css:"upload-extension",data:i.app.list_extensions,container:this.$(".upload-extension"),value:a,onchange:function(e){i.model.set("extension",e)}}),this.model.set({genome:s,extension:a}),this.$symbol.on("click",function(){i._removeRow()}),this.$(".upload-extension-info").on("click",function(e){i.app.showExtensionInfo({$el:n(e.target),title:i.select_extension.text(),extension:i.select_extension.value()})}).on("mousedown",function(e){e.preventDefault()}),this.$settings.on("click",function(e){i._showSettings()}).on("mousedown",function(e){e.preventDefault()}),this.$text_content.on("change input",function(e){i.model.set({url_paste:n(e.target).val(),file_size:n(e.target).val().length})}),this.listenTo(this.model,"change:percentage",function(){i._refreshPercentage()}),this.listenTo(this.model,"change:status",function(){i._refreshStatus()}),this.listenTo(this.model,"change:info",function(){i._refreshInfo()}),this.listenTo(this.model,"change:genome",function(){i._refreshGenome()}),this.listenTo(this.model,"change:extension",function(){i._refreshExtension()}),this.listenTo(this.model,"change:file_size",function(){i._refreshFileSize()})},render:function(){this._refreshType(),this._refreshPercentage(),this._refreshStatus(),this._refreshInfo(),this._refreshGenome(),this._refreshExtension(),this._refreshFileSize()},remove:function(){this.select_genome.remove(),this.select_extension.remove(),e.View.prototype.remove.apply(this)},_refreshType:function(){var e=this.model.attributes;this.$title.html(s.escape(e.file_name)),this.$size.html(d.default.bytesToString(e.file_size)),this.$mode.removeClass().addClass("upload-mode").addClass("text-primary"),"new"==e.file_mode?(this.$text.css({width:this.$el.width()-16+"px",top:this.$el.height()-8+"px"}).show(),this.$el.height(this.$el.height()-8+this.$text.height()+16),this.$mode.addClass("fa fa-edit")):"local"==e.file_mode?this.$mode.addClass("fa fa-laptop"):"ftp"==e.file_mode&&this.$mode.addClass("fa fa-folder-open-o")},_refreshExtension:function(){this.select_extension.value(this.model.get("extension"))},_refreshGenome:function(){this.select_genome.value(this.model.get("genome"))},_refreshInfo:function(){var e=this.model.get("info");e?this.$info_text.html("<strong>Failed: </strong>"+e).show():this.$info_text.hide()},_refreshPercentage:function(){var e=parseInt(this.model.get("percentage"));this.$progress_bar.css({width:e+"%"}),this.$percentage.html(100!=e?e+"%":"Adding to history...")},_refreshStatus:function(){var e=this.model.get("status");this.$symbol.removeClass().addClass("upload-symbol").addClass(this.status_classes[e]),this.model.set("enabled","init"==e);var t=this.model.get("enabled");this.$text_content.attr("disabled",!t),t?(this.select_genome.enable(),this.select_extension.enable()):(this.select_genome.disable(),this.select_extension.disable()),"success"==e&&(this.$el.addClass("success"),this.$percentage.html("100%")),"error"==e&&(this.$el.addClass("danger"),this.$info_progress.hide())},_refreshFileSize:function(){this.$size.html(d.default.bytesToString(this.model.get("file_size")))},_removeRow:function(){-1!==["init","success","error"].indexOf(this.model.get("status"))&&this.app.collection.remove(this.model)},_showSettings:function(){this.settings.visible?this.settings.hide():(this.settings.empty(),this.settings.append(new h.default(this).$el),this.settings.show())},_template:function(e){return'<tr id="upload-row-'+e.id+'" class="upload-row"><td><div class="upload-text-column"><div class="upload-mode"/><div class="upload-title"/><div class="upload-text"><div class="upload-text-info">You can tell Galaxy to download data from web by entering URL in this box (one per line). You can also directly paste the contents of a file.</div><textarea class="upload-text-content form-control"/></div></div></td><td><div class="upload-size"/></td><td><div class="upload-extension" style="float: left;"/>&nbsp;&nbsp<div class="upload-extension-info upload-icon-button fa fa-search"/></td><td><div class="upload-genome"/></td><td><div class="upload-settings upload-icon-button fa fa-gear"/></td><td><div class="upload-info"><div class="upload-info-text"/><div class="upload-info-progress progress"><div class="upload-progress-bar progress-bar progress-bar-success"/><div class="upload-percentage">0%</div></div></div></td><td><div class="upload-symbol '+this.status_classes.init+'"/></td></tr>'}})}).call(t,i(2),i(0),i(1))},function(e,t,i){"use strict";(function(e,i,n){Object.defineProperty(t,"__esModule",{value:!0}),t.default=e.View.extend({initialize:function(e){this.$container=e.$container,this.collection=e.collection,this.new_content=e.new_content,this.max=e.max||50,this.content_list={},this.$message=i("<div/>").addClass("ui-limitloader").append("...only the first "+this.max+" entries are visible."),this.$container.append(this.$message),this.listenTo(this.collection,"reset",this._reset,this),this.listenTo(this.collection,"add",this._refresh,this),this.listenTo(this.collection,"remove",this._remove,this)},_done:function(){var e=n.size(this.content_list)>this.max;return this.$message[e?"show":"hide"](),e},_reset:function(){n.each(this.content_list,function(e){e.remove()}),this.content_list={},this.$message.hide()},_remove:function(e){var t=e.id,i=this.content_list[t];i&&(i.remove(),delete this.content_list[t]),this._refresh()},_refresh:function(){if(!this._done())for(var e in this.collection.models){var t=this.collection.models[e];this.content_list[t.id];if(!this.content_list[t.id]){var i=this.new_content(t);if(this.content_list[t.id]=i,this._done())break}}}})}).call(t,i(2),i(0),i(1))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(3),l=a(o),r=i(5),d=(a(r),i(49)),c=a(d),u=i(259),h=a(u),f=i(92),p=a(f),m=i(27),g=(a(m),i(12)),_=a(g),v=i(6),w=a(v);t.default=e.View.extend({collection:new c.default.Collection,initialize:function(e){var t=this;this.app=e,this.options=e.options,this.list_extensions=e.list_extensions,this.list_genomes=e.list_genomes,this.ftp_upload_site=e.currentFtp(),this.setElement(this._template()),this.btnStart=new w.default.Button({title:(0,l.default)("Start"),onclick:function(){t._eventStart()}}),this.btnClose=new w.default.Button({title:(0,l.default)("Close"),onclick:function(){t.app.modal.hide()}}),n.each([this.btnStart,this.btnClose],function(e){t.$(".upload-buttons").prepend(e.$el)}),this.select_extension=new _.default.View({css:"upload-footer-selection",container:this.$(".upload-footer-extension"),data:n.filter(this.list_extensions,function(e){return e.composite_files}),onchange:function(e){t.collection.reset();var i=n.findWhere(t.list_extensions,{id:e});i&&i.composite_files&&n.each(i.composite_files,function(e){t.collection.add({id:t.collection.size(),file_desc:e.description||e.name})})}}),this.$(".upload-footer-extension-info").on("click",function(e){new p.default({$el:s(e.target),title:t.select_extension.text(),extension:t.select_extension.value(),list:t.list_extensions,placement:"top"})}).on("mousedown",function(e){e.preventDefault()}),this.select_genome=new _.default.View({css:"upload-footer-selection",container:this.$(".upload-footer-genome"),data:this.list_genomes,value:this.options.default_genome}),this.listenTo(this.collection,"add",function(e){t._eventAnnounce(e)}),this.listenTo(this.collection,"change add",function(){t.render()}),this.select_extension.options.onchange(this.select_extension.value()),this.render()},render:function(){var e=this.collection.first();e&&"running"==e.get("status")?(this.select_genome.disable(),this.select_extension.disable()):(this.select_genome.enable(),this.select_extension.enable()),this.collection.where({status:"ready"}).length==this.collection.length&&this.collection.length>0?(this.btnStart.enable(),this.btnStart.$el.addClass("btn-primary")):(this.btnStart.disable(),this.btnStart.$el.removeClass("btn-primary")),this.$(".upload-table")[this.collection.length>0?"show":"hide"]()},_eventAnnounce:function(e){var t=new h.default(this,{model:e});this.$(".upload-table > tbody:first").append(t.$el),this.$(".upload-table")[this.collection.length>0?"show":"hide"](),t.render()},_eventStart:function(){var e=this;this.collection.each(function(t){t.set({genome:e.select_genome.value(),extension:e.select_extension.value()})}),s.uploadpost({url:this.app.options.nginx_upload_path,data:this.app.toData(this.collection.filter()),success:function(t){e._eventSuccess(t)},error:function(t){e._eventError(t)},progress:function(t){e._eventProgress(t)}})},_eventProgress:function(e){this.collection.each(function(t){t.set("percentage",e)})},_eventSuccess:function(e){this.collection.each(function(e){e.set("status","success")}),Galaxy.currHistoryPanel.refreshContents()},_eventError:function(e){this.collection.each(function(t){t.set({status:"error",info:e})})},_template:function(){return'<div class="upload-view-composite"><div class="upload-top"><h6 class="upload-top-info"/></div><div class="upload-box"><table class="upload-table ui-table-striped" style="display: none;"><thead><tr><th/><th/><th>Description</th><th>Name</th><th>Size</th><th>Settings</th><th>Status</th></tr></thead><tbody/></table></div><div class="upload-footer"><span class="upload-footer-title">Composite Type:</span><span class="upload-footer-extension"/><span class="upload-footer-extension-info upload-icon-button fa fa-search"/> <span class="upload-footer-title">Genome/Build:</span><span class="upload-footer-genome"/></div><div class="upload-buttons"/></div>'}})}).call(t,i(2),i(1),i(0))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(3),l=a(o),r=i(5),d=a(r),c=i(90),u=a(c),h=i(91),f=a(h),p=i(27),m=a(p),g=i(6),_=a(g),v=i(12);a(v);i(93),t.default=e.View.extend({status_classes:{init:"upload-mode fa fa-exclamation text-primary",ready:"upload-mode fa fa-check text-success",running:"upload-mode fa fa-spinner fa-spin",success:"upload-mode fa fa-check",error:"upload-mode fa fa-exclamation-triangle"},initialize:function(e,t){var i=this;this.app=e,this.model=t.model,this.setElement(this._template()),this.$source=this.$(".upload-source"),this.$settings=this.$(".upload-settings"),this.$status=this.$(".upload-status"),this.$text=this.$(".upload-text"),this.$text_content=this.$(".upload-text-content"),this.$info_text=this.$(".upload-info-text"),this.$info_progress=this.$(".upload-info-progress"),this.$file_name=this.$(".upload-file-name"),this.$file_desc=this.$(".upload-file-desc"),this.$file_size=this.$(".upload-file-size"),this.$progress_bar=this.$(".upload-progress-bar"),this.$percentage=this.$(".upload-percentage"),this.uploadinput=this.$el.uploadinput({ondragover:function(){i.model.get("enabled")&&i.$el.addClass("warning")},ondragleave:function(){i.$el.removeClass("warning")},onchange:function(e){"running"!=i.model.get("status")&&e&&e.length>0&&(i.model.reset({file_data:e[0],file_name:e[0].name,file_size:e[0].size,file_mode:e[0].mode||"local"}),i._refreshReady())}}),this.button_menu=new _.default.ButtonMenu({icon:"fa-caret-down",title:(0,l.default)("Select"),pull:"left"}),this.$source.append(this.button_menu.$el),this.button_menu.addMenu({icon:"fa-laptop",title:(0,l.default)("Choose local file"),onclick:function(){i.uploadinput.dialog()}}),this.app.ftp_upload_site&&this.button_menu.addMenu({icon:"fa-folder-open-o",title:(0,l.default)("Choose FTP file"),onclick:function(){i._showFtp()}}),this.button_menu.addMenu({icon:"fa-edit",title:"Paste/Fetch data",onclick:function(){i.model.reset({file_mode:"new",file_name:"New File"})}}),this.ftp=new m.default.View({title:"Choose FTP file:",container:this.$source.find(".ui-button-menu"),placement:"right"}),this.settings=new m.default.View({title:(0,l.default)("Upload configuration"),container:this.$settings,placement:"bottom"}),this.$text_content.on("change input",function(e){i.model.set({url_paste:n(e.target).val(),file_size:n(e.target).val().length}),i._refreshReady()}),this.$settings.on("click",function(e){i._showSettings()}).on("mousedown",function(e){e.preventDefault()}),this.listenTo(this.model,"change:percentage",function(){i._refreshPercentage()}),this.listenTo(this.model,"change:status",function(){i._refreshStatus()}),this.listenTo(this.model,"change:info",function(){i._refreshInfo()}),this.listenTo(this.model,"change:file_name",function(){i._refreshFileName()}),this.listenTo(this.model,"change:file_mode",function(){i._refreshMode()}),this.listenTo(this.model,"change:file_size",function(){i._refreshFileSize()}),this.listenTo(this.model,"remove",function(){i.remove()}),this.app.collection.on("reset",function(){i.remove()})},render:function(){this.$el.attr("id","upload-row-"+this.model.id),this.$file_name.html(s.escape(this.model.get("file_name")||"-")),this.$file_desc.html(this.model.get("file_desc")||"Unavailable"),this.$file_size.html(d.default.bytesToString(this.model.get("file_size"))),this.$status.removeClass().addClass(this.status_classes.init)},remove:function(){e.View.prototype.remove.apply(this)},_refreshReady:function(){this.app.collection.each(function(e){e.set("status",e.get("file_size")>0&&"ready"||"init")})},_refreshMode:function(){"new"==this.model.get("file_mode")?(this.height=this.$el.height(),this.$text.css({width:this.$el.width()-16+"px",top:this.$el.height()-8+"px"}).show(),this.$el.height(this.$el.height()-8+this.$text.height()+16),this.$text_content.val("").trigger("keyup")):(this.$el.height(this.height),this.$text.hide())},_refreshInfo:function(){var e=this.model.get("info");e?this.$info_text.html("<strong>Failed: </strong>"+e).show():this.$info_text.hide()},_refreshPercentage:function(){var e=parseInt(this.model.get("percentage"));0!=e?this.$progress_bar.css({width:e+"%"}):(this.$progress_bar.addClass("no-transition"),this.$progress_bar.css({width:"0%"}),this.$progress_bar[0].offsetHeight,this.$progress_bar.removeClass("no-transition")),this.$percentage.html(100!=e?e+"%":"Adding to history...")},_refreshStatus:function(){var e=this.model.get("status");this.$status.removeClass().addClass(this.status_classes[e]),this.model.set("enabled","running"!=e),this.$text_content.attr("disabled",!this.model.get("enabled")),this.$el.removeClass("success danger warning"),"running"!=e&&"ready"!=e||this.model.set("percentage",0),this.$source.find(".button")["running"==e?"addClass":"removeClass"]("disabled"),"success"==e&&(this.$el.addClass("success"),this.model.set("percentage",100),this.$percentage.html("100%")),"error"==e?(this.$el.addClass("danger"),this.model.set("percentage",0),this.$info_progress.hide(),this.$info_text.show()):(this.$info_progress.show(),this.$info_text.hide())},_refreshFileName:function(){this.$file_name.html(this.model.get("file_name")||"-")},_refreshFileSize:function(){this.$file_size.html(d.default.bytesToString(this.model.get("file_size")))},_showFtp:function(){if(this.ftp.visible)this.ftp.hide();else{var e=this;this.ftp.empty(),this.ftp.append(new f.default({ftp_upload_site:this.app.ftp_upload_site,onchange:function(t){e.ftp.hide(),"running"!=e.model.get("status")&&t&&(e.model.reset({file_mode:"ftp",file_name:t.path,file_size:t.size,file_path:t.path}),e._refreshReady())}}).$el),this.ftp.show()}},_showSettings:function(){this.settings.visible?this.settings.hide():(this.settings.empty(),this.settings.append(new u.default(this).$el),this.settings.show())},_template:function(){return'<tr class="upload-row"><td><div class="upload-source"/><div class="upload-text-column"><div class="upload-text"><div class="upload-text-info">You can tell Galaxy to download data from web by entering URL in this box (one per line). You can also directly paste the contents of a file.</div><textarea class="upload-text-content form-control"/></div></div></td><td><div class="upload-status"/></td><td><div class="upload-file-desc upload-title"/></td><td><div class="upload-file-name upload-title"/></td><td><div class="upload-file-size upload-size"/></td><td><div class="upload-settings upload-icon-button fa fa-gear"/></td><td><div class="upload-info"><div class="upload-info-text"/><div class="upload-info-progress progress"><div class="upload-progress-bar progress-bar progress-bar-success"/><div class="upload-percentage">0%</div></div></div></td></tr>'}})}).call(t,i(2),i(0),i(1))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(3),l=a(o),r=i(5),d=(a(r),i(49)),c=a(d),u=i(261),h=a(u),f=i(91),p=a(f),m=i(92),g=a(m),_=i(27),v=a(_),w=i(12),y=a(w),b=i(6),x=a(b),$=i(28);a($);i(93),t.default=e.View.extend({upload_size:0,collection:new c.default.Collection,counter:{announce:0,success:0,error:0,running:0,reset:function(){this.announce=this.success=this.error=this.running=0}},initialize:function(e){var t=this;this.app=e,this.options=e.options,this.list_extensions=e.list_extensions,this.list_genomes=e.list_genomes,this.ui_button=e.ui_button,this.ftp_upload_site=e.currentFtp(),this.setElement(this._template()),this.btnLocal=new x.default.Button({id:"btn-local",title:(0,l.default)("Choose local files"),onclick:function(){t.uploadbox.select()},icon:"fa fa-laptop"}),this.btnFtp=new x.default.Button({id:"btn-ftp",title:(0,l.default)("Choose FTP files"),onclick:function(){t._eventFtp()},icon:"fa fa-folder-open-o"}),this.btnCreate=new x.default.Button({id:"btn-new",title:"Paste/Fetch data",onclick:function(){t._eventCreate()},icon:"fa fa-edit"}),this.btnStart=new x.default.Button({id:"btn-start",title:(0,l.default)("Start"),onclick:function(){t._eventStart()}}),this.btnBuild=new x.default.Button({id:"btn-build",title:(0,l.default)("Build"),onclick:function(){t._eventBuild()}}),this.btnStop=new x.default.Button({id:"btn-stop",title:(0,l.default)("Pause"),onclick:function(){t._eventStop()}}),this.btnReset=new x.default.Button({id:"btn-reset",title:(0,l.default)("Reset"),onclick:function(){t._eventReset()}}),this.btnClose=new x.default.Button({id:"btn-close",title:(0,l.default)("Close"),onclick:function(){t.app.modal.hide()}}),n.each([this.btnLocal,this.btnFtp,this.btnCreate,this.btnStop,this.btnReset,this.btnStart,this.btnBuild,this.btnClose],function(e){t.$(".upload-buttons").prepend(e.$el)}),this.uploadbox=this.$(".upload-box").uploadbox({url:this.app.options.nginx_upload_path,announce:function(e,i){t._eventAnnounce(e,i)},initialize:function(e){return t.app.toData([t.collection.get(e)],t.history_id)},progress:function(e,i){t._eventProgress(e,i)},success:function(e,i){t._eventSuccess(e,i)},error:function(e,i){t._eventError(e,i)},complete:function(){t._eventComplete()},ondragover:function(){t.$(".upload-box").addClass("highlight")},ondragleave:function(){t.$(".upload-box").removeClass("highlight")}}),this.ftp=new v.default.View({title:(0,l.default)("FTP files"),container:this.btnFtp.$el}),this.select_extension=new y.default.View({css:"upload-footer-selection-compressed",container:this.$(".upload-footer-extension"),data:n.filter(this.list_extensions,function(e){return!e.composite_files}),value:this.options.default_extension,onchange:function(e){t.updateExtension(e)}}),this.collectionType="list",this.select_collection=new y.default.View({css:"upload-footer-selection-compressed",container:this.$(".upload-footer-collection-type"),data:[{id:"list",text:"List"},{id:"paired",text:"Paired"},{id:"list:paired",text:"List of Pairs"}],value:"list",onchange:function(e){t.updateCollectionType(e)}}),this.$(".upload-footer-extension-info").on("click",function(e){new g.default({$el:s(e.target),title:t.select_extension.text(),extension:t.select_extension.value(),list:t.list_extensions,placement:"top"})}).on("mousedown",function(e){e.preventDefault()}),this.select_genome=new y.default.View({css:"upload-footer-selection",container:this.$(".upload-footer-genome"),data:this.list_genomes,value:this.options.default_genome,onchange:function(e){t.updateGenome(e)}}),this.collection.on("remove",function(e){t._eventRemove(e)}),this._updateScreen()},_eventAnnounce:function(e,t){this.counter.announce++;var i=new c.default.Model({id:e,file_name:t.name,file_size:t.size,file_mode:t.mode||"local",file_path:t.path,file_data:t,extension:this.select_extension.value(),genome:this.select_genome.value()});this.collection.add(i);var n=new h.default(this,{model:i});this.$(".upload-table > tbody:first").append(n.$el),this._updateScreen(),n.render()},_eventProgress:function(e,t){var i=this.collection.get(e);i.set("percentage",t),this.ui_button.model.set("percentage",this._uploadPercentage(t,i.get("file_size")))},_eventSuccess:function(e,t){var i=n.pluck(t.outputs,"hid"),s=this.collection.get(e);s.set({percentage:100,status:"success",hids:i}),this.ui_button.model.set("percentage",this._uploadPercentage(100,s.get("file_size"))),this.upload_completed+=100*s.get("file_size"),this.counter.announce--,this.counter.success++,this._updateScreen(),Galaxy.currHistoryPanel.refreshContents()},_eventError:function(e,t){var i=this.collection.get(e);i.set({percentage:100,status:"error",info:t}),this.ui_button.model.set({percentage:this._uploadPercentage(100,i.get("file_size")),status:"danger"}),this.upload_completed+=100*i.get("file_size"),this.counter.announce--,this.counter.error++,this._updateScreen()},_eventComplete:function(){this.collection.each(function(e){"queued"==e.get("status")&&e.set("status","init")}),this.counter.running=0,this._updateScreen()},_eventBuild:function(){var e=[];n.forEach(this.collection.models,function(t){e.push.apply(e,t.get("hids"))});var t=n.map(e,function(e){return Galaxy.currHistoryPanel.collection.getByHid(e)}),i=new Galaxy.currHistoryPanel.collection.constructor(t);i.historyId=Galaxy.currHistoryPanel.collection.historyId,Galaxy.currHistoryPanel.buildCollection(this.collectionType,i,!0),this.counter.running=0,this._updateScreen(),this._eventReset(),this.app.modal.hide()},_eventRemove:function(e){var t=e.get("status");"success"==t?this.counter.success--:"error"==t?this.counter.error--:this.counter.announce--,this.uploadbox.remove(e.id),this._updateScreen()},_eventFtp:function(){if(this.ftp.visible)this.ftp.hide();else{this.ftp.empty();var e=this;this.ftp.append(new p.default({collection:this.collection,ftp_upload_site:this.ftp_upload_site,onadd:function(t){return e.uploadbox.add([{mode:"ftp",name:t.path,size:t.size,path:t.path}])},onremove:function(t){e.collection.remove(t)}}).$el),this.ftp.show()}},_eventCreate:function(){this.uploadbox.add([{name:"New File",size:0,mode:"new"}])},_eventStart:function(){if(!(0==this.counter.announce||this.counter.running>0)){var e=this;this.upload_size=0,this.upload_completed=0,this.collection.each(function(t){"init"==t.get("status")&&(t.set("status","queued"),e.upload_size+=t.get("file_size"))}),this.ui_button.model.set({percentage:0,status:"success"}),this.counter.running=this.counter.announce,this.history_id=this.app.currentHistory(),this.uploadbox.start(),this._updateScreen()}},_eventStop:function(){this.counter.running>0&&(this.ui_button.model.set("status","info"),s(".upload-top-info").html("Queue will pause after completing the current file..."),this.uploadbox.stop())},_eventReset:function(){0==this.counter.running&&(this.collection.reset(),this.counter.reset(),this.uploadbox.reset(),this.select_extension.value(this.options.default_extension),this.select_genome.value(this.options.default_genome),this.ui_button.model.set("percentage",0),this._updateScreen())},updateExtension:function(e,t){var i=this;this.collection.each(function(n){"init"!=n.get("status")||n.get("extension")!=i.options.default_extension&&t||n.set("extension",e)})},updateCollectionType:function(e){this.collectionType=e},updateGenome:function(e,t){var i=this;this.collection.each(function(n){"init"!=n.get("status")||n.get("genome")!=i.options.default_genome&&t||n.set("genome",e)})},_updateScreen:function(){var e="";e=0==this.counter.announce?this.uploadbox.compatible()?"&nbsp;":"Browser does not support Drag & Drop. Try Firefox 4+, Chrome 7+, IE 10+, Opera 12+ or Safari 6+.":0==this.counter.running?"You added "+this.counter.announce+" file(s) to the queue. Add more files or click 'Start' to proceed.":"Please wait..."+this.counter.announce+" out of "+this.counter.running+" remaining.",this.$(".upload-top-info").html(e);var t=0==this.counter.running&&this.counter.announce+this.counter.success+this.counter.error>0,i=0==this.counter.running&&this.counter.announce>0,n=0==this.counter.running&&0==this.counter.announce&&this.counter.success>0&&0==this.counter.error,s=0==this.counter.running,a=this.counter.announce+this.counter.success+this.counter.error>0;this.btnReset[t?"enable":"disable"](),this.btnStart[i?"enable":"disable"](),this.btnStart.$el[i?"addClass":"removeClass"]("btn-primary"),this.btnBuild[n?"enable":"disable"](),this.btnBuild.$el[n?"addClass":"removeClass"]("btn-primary"),this.btnStop[this.counter.running>0?"enable":"disable"](),this.btnLocal[s?"enable":"disable"](),this.btnFtp[s?"enable":"disable"](),this.btnCreate[s?"enable":"disable"](),this.btnFtp.$el[this.ftp_upload_site?"show":"hide"](),this.$(".upload-table")[a?"show":"hide"](),this.$(".upload-helper")[a?"hide":"show"]()},_uploadPercentage:function(e,t){return(this.upload_completed+e*t)/this.upload_size},_template:function(){return'<div class="upload-view-default"><div class="upload-top"><h6 class="upload-top-info"/></div><div class="upload-box"><div class="upload-helper"><i class="fa fa-files-o"/>Drop files here</div><table class="upload-table ui-table-striped" style="display: none;"><thead><tr><th>Name</th><th>Size</th><th>Status</th><th/></tr></thead><tbody/></table></div><div class="upload-footer"><span class="upload-footer-title-compressed">Collection Type:</span><span class="upload-footer-collection-type"/><span class="upload-footer-title-compressed">File Type:</span><span class="upload-footer-extension"/><span class="upload-footer-extension-info upload-icon-button fa fa-search"/> <span class="upload-footer-title-compressed">Genome (set all):</span><span class="upload-footer-genome"/></div><div class="upload-buttons"/></div>'}})}).call(t,i(2),i(1),i(0))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(3),l=a(o),r=i(5),d=a(r),c=i(49),u=(a(c),i(90)),h=a(u),f=i(27),p=a(f),m=i(12);a(m);t.default=e.View.extend({status_classes:{init:"upload-icon-button fa fa-trash-o",queued:"upload-icon fa fa-spinner fa-spin",running:"upload-icon fa fa-spinner fa-spin",success:"upload-icon-button fa fa-check",error:"upload-icon-button fa fa-exclamation-triangle"},initialize:function(e,t){var i=this;this.app=e,this.model=t.model,this.setElement(this._template(t.model)),this.$mode=this.$(".upload-mode"),this.$title=this.$(".upload-title-extended"),this.$text=this.$(".upload-text"),this.$size=this.$(".upload-size"),this.$info_text=this.$(".upload-info-text"),this.$info_progress=this.$(".upload-info-progress"),this.$text_content=this.$(".upload-text-content"),this.$symbol=this.$(".upload-symbol"),this.$progress_bar=this.$(".upload-progress-bar"),this.$percentage=this.$(".upload-percentage"),this.settings=new p.default.View({title:(0,l.default)("Upload configuration"),container:this.$(".upload-settings"),placement:"bottom"});this.app.select_genome.value(),this.app.select_extension.value();this.$symbol.on("click",function(){i._removeRow()}),this.$text_content.on("change input",function(e){i.model.set({url_paste:n(e.target).val(),file_size:n(e.target).val().length})}),this.listenTo(this.model,"change:percentage",function(){i._refreshPercentage()}),this.listenTo(this.model,"change:status",function(){i._refreshStatus()}),this.listenTo(this.model,"change:info",function(){i._refreshInfo()}),this.listenTo(this.model,"change:file_size",function(){i._refreshFileSize()}),this.listenTo(this.model,"remove",function(){i.remove()}),this.app.collection.on("reset",function(){i.remove()})},render:function(){var e=this.model.attributes;this.$title.html(s.escape(e.file_name)),this.$size.html(d.default.bytesToString(e.file_size)),this.$mode.removeClass().addClass("upload-mode").addClass("text-primary"),"new"==e.file_mode?(this.$text.css({width:this.$el.width()-16+"px",top:this.$el.height()-8+"px"}).show(),this.$el.height(this.$el.height()-8+this.$text.height()+16),this.$mode.addClass("fa fa-edit")):"local"==e.file_mode?this.$mode.addClass("fa fa-laptop"):"ftp"==e.file_mode&&this.$mode.addClass("fa fa-folder-open-o")},_refreshInfo:function(){var e=this.model.get("info");e?this.$info_text.html("<strong>Failed: </strong>"+e).show():this.$info_text.hide()},_refreshPercentage:function(){var e=parseInt(this.model.get("percentage"));this.$progress_bar.css({width:e+"%"}),this.$percentage.html(100!=e?e+"%":"Adding to history...")},_refreshStatus:function(){var e=this.model.get("status");this.$symbol.removeClass().addClass("upload-symbol").addClass(this.status_classes[e]),this.model.set("enabled","init"==e);var t=this.model.get("enabled");this.$text_content.attr("disabled",!t),"success"==e&&(this.$el.addClass("success"),this.$percentage.html("100%")),"error"==e&&(this.$el.addClass("danger"),this.$info_progress.hide())},_refreshFileSize:function(){this.$size.html(d.default.bytesToString(this.model.get("file_size")))},_removeRow:function(){-1!==["init","success","error"].indexOf(this.model.get("status"))&&this.app.collection.remove(this.model)},_showSettings:function(){this.settings.visible?this.settings.hide():(this.settings.empty(),this.settings.append(new h.default(this).$el),this.settings.show())},_template:function(e){return'<tr id="upload-row-'+e.id+'" class="upload-row"><td><div class="upload-text-column"><div class="upload-mode"/><div class="upload-title-extended"/><div class="upload-text"><div class="upload-text-info">You can tell Galaxy to download data from web by entering URL in this box (one per line). You can also directly paste the contents of a file.</div><textarea class="upload-text-content form-control"/></div></div></td><td><div class="upload-size"/></td><td><div class="upload-info"><div class="upload-info-text"/><div class="upload-info-progress progress"><div class="upload-progress-bar progress-bar progress-bar-success"/><div class="upload-percentage">0%</div></div></div></td><td><div class="upload-symbol '+this.status_classes.init+'"/></td></tr>'}})}).call(t,i(2),i(0),i(1))},function(e,t,i){"use strict";(function(e){function n(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=i(6),a=n(s),o=i(263),l=n(o),r=i(264),d=n(r),c=i(3),u=n(c),h=e.View.extend({initialize:function(t,i){var n=this;this.userIsAnonymous=Galaxy.user.isAnonymous(),this.allow_user_dataset_purge=i.config.allow_user_dataset_purge,this.root=i.root,this.historyView=new d.default.CurrentHistoryView({className:d.default.CurrentHistoryView.prototype.className+" middle",purgeAllowed:this.allow_user_dataset_purge,linkTarget:"galaxy_main"}),Galaxy.currHistoryPanel=this.historyView,Galaxy.currHistoryPanel.listenToGalaxy(Galaxy),this.buttonRefresh=new a.default.ButtonLink({id:"history-refresh-button",title:(0,u.default)("Refresh history"),cls:"panel-header-button",icon:"fa fa-refresh",onclick:function(){n.historyView.loadCurrentHistory()}}),this.buttonOptions=new a.default.ButtonLink({id:"history-options-button",title:(0,u.default)("History options"),cls:"panel-header-button",target:"galaxy_main",icon:"fa fa-cog",href:this.root+"root/history_options"}),this.buttonViewMulti=new a.default.ButtonLink({id:"history-view-multi-button",title:(0,u.default)("View all histories"),cls:"panel-header-button",icon:"fa fa-columns",href:this.root+"history/view_multiple"}),this.model=new e.Model({cls:"history-right-panel",title:(0,u.default)("History"),buttons:[this.buttonRefresh,this.buttonOptions,this.buttonViewMulti]}),this.setElement(this._template()),this.historyView.setElement(this.$el),this.historyView.connectToQuotaMeter(Galaxy.quotaMeter),this.historyView.loadCurrentHistory(),Galaxy.listenTo(this.historyView,"history-size-change",function(){Galaxy.user.fetch({url:Galaxy.user.urlRoot()+"/"+(Galaxy.user.id||"current")})})},render:function(){this.optionsMenu=(0,l.default)(this.buttonOptions.$el,{anonymous:this.userIsAnonymous,purgeAllowed:this.allow_user_dataset_purge,root:this.root}),this.buttonViewMulti.$el[this.userIsAnonymous?"hide":"show"]()},_template:function(e){return['<div id="current-history-panel" class="history-panel middle"/>'].join("")},toString:function(){return"historyPanel"}});t.default=h}).call(t,i(2))},function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}function a(e,t,i){return n.clone(m).filter(function(n){return!(e&&!n.anon)&&(!(!t&&n.purge)&&(n.href&&(n.href=i+n.href,n.target=n.target||"galaxy_main"),n.confirm&&(n.func=function(){confirm(n.confirm)&&(galaxy_main.location=n.href)}),!0))})}Object.defineProperty(t,"__esModule",{value:!0});var o=i(47),l=s(o),r=i(55),d=s(r),c=i(4),u=(s(c),i(3)),h=s(u),f=i(68),p=s(f),m=[{html:(0,h.default)("History Lists"),header:!0},{html:(0,h.default)("Saved Histories"),href:"histories/list",target:"_top"},{html:(0,h.default)("Histories Shared with Me"),href:"histories/list_shared",target:"_top"},{html:(0,h.default)("Current History"),header:!0,anon:!0},{html:(0,h.default)("Create New"),func:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.createNewHistory()}},{html:(0,h.default)("Copy History"),func:function(){(0,d.default)(Galaxy.currHistoryPanel.model).done(function(){Galaxy.currHistoryPanel.loadCurrentHistory()})}},{html:(0,h.default)("Share or Publish"),href:"history/sharing"},{html:(0,h.default)("Show Structure"),href:"history/display_structured",anon:!0},{html:(0,h.default)("Extract Workflow"),href:"workflow/build_from_current_history"},{html:(0,h.default)("Delete"),anon:!0,func:function(){Galaxy&&Galaxy.currHistoryPanel&&confirm((0,h.default)("Really delete the current history?"))&&Galaxy.currHistoryPanel.model._delete().done(function(){Galaxy.currHistoryPanel.loadCurrentHistory()})}},{html:(0,h.default)("Delete Permanently"),purge:!0,anon:!0,func:function(){Galaxy&&Galaxy.currHistoryPanel&&confirm((0,h.default)("Really delete the current history permanently? This cannot be undone."))&&Galaxy.currHistoryPanel.model.purge().done(function(){Galaxy.currHistoryPanel.loadCurrentHistory()})}},{html:(0,h.default)("Dataset Actions"),header:!0,anon:!0},{html:(0,h.default)("Copy Datasets"),href:"dataset/copy_datasets"},{html:(0,h.default)("Dataset Security"),func:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.router&&Galaxy.router.push("/histories/permissions?id="+Galaxy.currHistoryPanel.model.id)}},{html:(0,h.default)("Resume Paused Jobs"),href:"history/resume_paused_jobs?current=True",anon:!0},{html:(0,h.default)("Collapse Expanded Datasets"),func:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.collapseAll()}},{html:(0,h.default)("Unhide Hidden Datasets"),anon:!0,func:function(){Galaxy&&Galaxy.currHistoryPanel&&confirm((0,h.default)("Really unhide all hidden datasets?"))&&e.post(Galaxy.root+"history/adjust_hidden",{user_action:"unhide"},function(){Galaxy.currHistoryPanel.loadCurrentHistory()})}},{html:(0,h.default)("Delete Hidden Datasets"),anon:!0,func:function(){Galaxy&&Galaxy.currHistoryPanel&&confirm((0,h.default)("Really delete all hidden datasets?"))&&e.post(Galaxy.root+"history/adjust_hidden",{user_action:"delete"},function(){Galaxy.currHistoryPanel.loadCurrentHistory()})}},{html:(0,h.default)("Purge Deleted Datasets"),confirm:(0,h.default)("Really delete all deleted datasets permanently? This cannot be undone."),href:"history/purge_deleted_datasets",purge:!0,anon:!0},{html:(0,h.default)("Downloads"),header:!0},{html:(0,h.default)("Export Tool Citations"),anon:!0,func:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.router&&Galaxy.router.push("/histories/citations?id="+Galaxy.currHistoryPanel.model.id)}},{html:(0,h.default)("Export History to File"),href:"history/export_archive?preview=True",anon:!0},{html:(0,h.default)("Other Actions"),header:!0},{html:(0,h.default)("Import from File"),href:"histories/import",target:"_top"}];p.default.add({url:"api/webhooks/history-menu/all",async:!1,callback:function(t){var i=[];e.each(t.models,function(e,t){var n=t.toJSON();n.activate&&i.push({html:(0,h.default)(n.config.title),anon:!0})}),i.length>0&&(i.unshift({html:(0,h.default)("Webhooks"),header:!0}),e.merge(m,i))}});var g=function(e,t){t=t||{};var i=void 0===t.anonymous||t.anonymous,n=t.purgeAllowed||!1,s=a(i,n,Galaxy.root);return new l.default(e,s)};t.default=g}).call(t,i(0),i(1))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(30),l=(a(o),i(71)),r=a(l),d=i(4),c=a(d),u=i(3),h=a(u),f=c.default.SessionStorageModel.extend({defaults:{tagsEditorShown:!1,annotationEditorShown:!1,scrollPosition:0},toString:function(){return"HistoryViewPrefs("+JSON.stringify(this.toJSON())+")"}});f.storageKey=function(){return"history-panel"};var p=r.default.HistoryViewEdit,m=p.extend({className:p.prototype.className+" current-history-panel",HDCAViewClass:p.prototype.HDCAViewClass.extend({foldoutStyle:"drilldown"}),emptyMsg:[(0,h.default)("This history is empty"),". ",(0,h.default)("You can "),'<a class="uploader-link" href="javascript:void(0)">',(0,h.default)("load your own data"),"</a>",(0,h.default)(" or "),'<a class="get-data-link" href="javascript:void(0)">',(0,h.default)("get data from an external source"),"</a>"].join(""),initialize:function(t){t=t||{},this.preferences=new f(e.extend({id:f.storageKey()},e.pick(t,e.keys(f.prototype.defaults)))),p.prototype.initialize.call(this,t),this.panelStack=[],this.currentContentId=t.currentContentId||null},_setUpListeners:function(){p.prototype._setUpListeners.call(this);var e=this;this.on("new-model",function(){e.preferences.set("scrollPosition",0)})},loadCurrentHistory:function(){return this.loadHistory(null,{url:Galaxy.root+"history/current_history_json"})},switchToHistory:function(e,t){return Galaxy.user.isAnonymous()?(this.trigger("error",(0,h.default)("You must be logged in to switch histories"),(0,h.default)("Anonymous user")),n.when()):this.loadHistory(e,{url:Galaxy.root+"history/set_as_current?id="+e})},createNewHistory:function(e){return Galaxy.user.isAnonymous()?(this.trigger("error",(0,h.default)("You must be logged in to create histories"),(0,h.default)("Anonymous user")),n.when()):this.loadHistory(null,{url:Galaxy.root+"history/create_new_current"})},setModel:function(e,t,i){return p.prototype.setModel.call(this,e,t,i),this.model&&this.model.id&&(this.log("checking for updates"),this.model.checkForUpdates()),this},_setUpModelListeners:function(){return p.prototype._setUpModelListeners.call(this),this.listenTo(this.model,{"change:nice_size change:size":function(){this.trigger("history-size-change",this,this.model,arguments)},"change:id":function(){this.once("loading-done",function(){this.model.checkForUpdates()})}})},_setUpCollectionListeners:function(){p.prototype._setUpCollectionListeners.call(this),this.listenTo(this.collection,"state:ready",function(e,t,i){e.get("visible")||this.collection.storage.includeHidden()||this.removeItemView(e)})},_setUpBehaviors:function(t){t=t||this.$el;var i=this;return p.prototype._setUpBehaviors.call(i,t),this._debouncedScrollCaptureHandler||(this._debouncedScrollCaptureHandler=e.debounce(function(){i.$el.is(":visible")&&i.preferences.set("scrollPosition",n(this).scrollTop())},40)),i.$scrollContainer(t).off("scroll",this._debouncedScrollCaptureHandler).on("scroll",this._debouncedScrollCaptureHandler),i},_buildNewRender:function(){if(!this.model)return n();var e=p.prototype._buildNewRender.call(this);return e.find(".search").prependTo(e.find("> .controls")),this._renderQuotaMessage(e),e},_renderQuotaMessage:function(e){return e=e||this.$el,n(this.templates.quotaMsg({},this)).prependTo(e.find(".messages"))},_renderTags:function(e){var t=this;p.prototype._renderTags.call(t,e),t.preferences.get("tagsEditorShown")&&t.tagsEditor.toggle(!0),t.listenTo(t.tagsEditor,"hiddenUntilActivated:shown hiddenUntilActivated:hidden",function(e){t.preferences.set("tagsEditorShown",e.hidden)})},_renderAnnotation:function(e){var t=this;p.prototype._renderAnnotation.call(t,e),t.preferences.get("annotationEditorShown")&&t.annotationEditor.toggle(!0),t.listenTo(t.annotationEditor,"hiddenUntilActivated:shown hiddenUntilActivated:hidden",function(e){t.preferences.set("annotationEditorShown",e.hidden)})},_swapNewRender:function(t){p.prototype._swapNewRender.call(this,t);var i=this;return e.delay(function(){var e=i.preferences.get("scrollPosition");e&&i.scrollTo(e,0)},10),this},_attachItems:function(e){p.prototype._attachItems.call(this,e);var t=this;return t.currentContentId&&t._setCurrentContentById(t.currentContentId),this},addItemView:function(e,t,i){var n=p.prototype.addItemView.call(this,e,t,i);return n&&this.panelStack.length?this._collapseDrilldownPanel():n},_setUpItemViewListeners:function(e){var t=this;return p.prototype._setUpItemViewListeners.call(t,e),t.listenTo(e,{"expanded:drilldown":function(e,t){this._expandDrilldownPanel(t)},"collapsed:drilldown":function(e,t){this._collapseDrilldownPanel(t)}})},setCurrentContent:function(e){this.$(".history-content.current-content").removeClass("current-content"),e?(e.$el.addClass("current-content"),this.currentContentId=e.model.id):this.currentContentId=null},_setCurrentContentById:function(e){var t=this.viewFromModelId(e)||null;this.setCurrentContent(t)},_expandDrilldownPanel:function(e){this.panelStack.push(e),this.$controls().add(this.$list()).hide(),e.parentName=this.model.get("name"),e.delegateEvents().render().$el.appendTo(this.$el)},_collapseDrilldownPanel:function(e){this.panelStack.pop(),this.$controls().add(this.$list()).show()},events:e.extend(e.clone(p.prototype.events),{"click .uploader-link":function(e){Galaxy.upload.show(e)},"click .get-data-link":function(e){var t=n(".toolMenuContainer");t.parent().scrollTop(0),t.find('span:contains("Get Data")').click()}}),listenToGalaxy:function(t){this.listenTo(t,{"center-frame:load":function(t){var i=t.fullpath,n=null,s={display:/datasets\/([a-f0-9]+)\/display/,edit:/datasets\/([a-f0-9]+)\/edit/,report_error:/dataset\/errors\?id=([a-f0-9]+)/,rerun:/tool_runner\/rerun\?id=([a-f0-9]+)/,show_params:/datasets\/([a-f0-9]+)\/show_params/};e.find(s,function(t,s){return n=e.result(i.match(t),1)}),this._setCurrentContentById(n?"dataset-"+n:null)},"center-panel:load":function(e){this._setCurrentContentById()}})},connectToQuotaMeter:function(e){return e?(this.listenTo(e,"quota:over",this.showQuotaMessage),this.listenTo(e,"quota:under",this.hideQuotaMessage),this.on("rendered rendered:initial",function(){e&&e.isOverQuota()&&this.showQuotaMessage()}),this):this},clearMessages:function(t){var i=e.isUndefined(t)?this.$messages().children('[class$="message"]'):n(t.currentTarget);return i=i.not(".quota-message"),i.fadeOut(this.fxSpeed,function(){n(this).remove()}),this},showQuotaMessage:function(){var e=this.$(".quota-message");e.is(":hidden")&&e.slideDown(this.fxSpeed)},hideQuotaMessage:function(){var e=this.$(".quota-message");e.is(":hidden")||e.slideUp(this.fxSpeed)},unhideHidden:function(){var e=this;return confirm((0,h.default)("Really unhide all hidden datasets?"))?e.model.contents._filterAndUpdate({visible:!1,deleted:"",purged:""},{visible:!0}).done(function(){e.model.contents.includeHidden||e.renderItems()}):s.when()},deleteHidden:function(){var e=this;return confirm((0,h.default)("Really delete all hidden datasets?"))?e.model.contents._filterAndUpdate({visible:!1,deleted:"",purged:""},{deleted:!0,visible:!0}):s.when()},toString:function(){return"CurrentHistoryView("+(this.model?this.model.get("name"):"")+")"}});m.prototype.templates=function(){var t=c.default.wrapTemplate(['<div class="quota-message errormessage">',(0,h.default)("You are over your disk quota"),". ",(0,h.default)("Tool execution is on hold until your disk usage drops below your allocated quota"),".","</div>"],"history");return e.extend(e.clone(p.prototype.templates),{quotaMsg:t})}(),t.default={CurrentHistoryView:m}}).call(t,i(1),i(0),i(0))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(3),l=a(o),r=i(13),d=(a(r),i(6)),c=a(d),u=i(26),h=a(u),f=e.Model.extend({initialize:function(e){e=e||{},e.user_id=e.user_id||Galaxy.user.id,this.set({user_id:e.user_id,information:{title:(0,l.default)("Manage information"),description:"Edit your email, addresses and custom parameters or change your username.",url:"api/users/"+e.user_id+"/information/inputs",icon:"fa-user",redirect:"user"},password:{title:(0,l.default)("Change password"),description:(0,l.default)("Allows you to change your login credentials."),icon:"fa-unlock-alt",url:"api/users/"+e.user_id+"/password/inputs",submit_title:"Save password",redirect:"user"},communication:{title:(0,l.default)("Change communication settings"),description:(0,l.default)("Enable or disable the communication feature to chat with other users."),url:"api/users/"+e.user_id+"/communication/inputs",icon:"fa-comments-o",redirect:"user"},permissions:{title:(0,l.default)("Set dataset permissions for new histories"),description:"Grant others default access to newly created histories. Changes made here will only affect histories created after these settings have been stored.",url:"api/users/"+e.user_id+"/permissions/inputs",icon:"fa-users",submit_title:"Save permissions",redirect:"user"},api_key:{title:(0,l.default)("Manage API key"),description:(0,l.default)("Access your current API key or create a new one."),url:"api/users/"+e.user_id+"/api_key/inputs",icon:"fa-key",submit_title:"Create a new key",submit_icon:"fa-check"},toolbox_filters:{title:(0,l.default)("Manage Toolbox filters"),description:(0,l.default)("Customize your Toolbox by displaying or omitting sets of Tools."),url:"api/users/"+e.user_id+"/toolbox_filters/inputs",icon:"fa-filter",submit_title:"Save filters",redirect:"user"},openids:{title:(0,l.default)("Manage OpenIDs"),description:(0,l.default)("Associate OpenIDs with your account."),icon:"fa-openid",onclick:function(){window.location.href=Galaxy.root+"openids/list"}},custom_builds:{title:(0,l.default)("Manage custom builds"),description:(0,l.default)("Add or remove custom builds using history datasets."),icon:"fa-cubes",onclick:function(){window.location.href=Galaxy.root+"custom_builds"}},logout:{title:(0,l.default)("Sign out"),description:(0,l.default)("Click here to sign out of all sessions."),icon:"fa-sign-out",onclick:function(){Galaxy.modal.show({title:(0,l.default)("Sign out"),body:"Do you want to continue and sign out of all active sessions?",buttons:{Cancel:function(){Galaxy.modal.hide()},"Sign out":function(){window.location.href=Galaxy.root+"user/logout?session_csrf_token="+Galaxy.session_csrf_token}}})}}})}}),p=e.View.extend({title:(0,l.default)("User Preferences"),initialize:function(){this.model=new f,this.setElement("<div/>"),this.render()},render:function(){var e=this,t=Galaxy.config;n.getJSON(Galaxy.root+"api/users/"+Galaxy.user.id,function(i){e.$preferences=n("<div/>").addClass("ui-panel").append(n("<h2/>").append("User preferences")).append(n("<p/>").append("You are logged in as <strong>"+s.escape(i.email)+"</strong>.")).append(e.$table=n("<table/>").addClass("ui-panel-table"));var a=h.default.get("message"),o=h.default.get("status");a&&o&&e.$preferences.prepend(new c.default.Message({message:a,status:o}).$el),t.use_remote_user||(e._addLink("information"),e._addLink("password")),t.enable_communication_server&&e._addLink("communication"),e._addLink("custom_builds"),e._addLink("permissions"),e._addLink("api_key"),t.has_user_tool_filters&&e._addLink("toolbox_filters"),t.enable_openid&&!t.use_remote_user&&e._addLink("openids"),Galaxy.session_csrf_token&&e._addLink("logout"),e.$preferences.append(e._templateFooter(i)),e.$el.empty().append(e.$preferences)})},_addLink:function(e){var t=this.model.get(e),i=n(this._templateLink(t)),s=i.find("a");t.onclick?s.on("click",function(){t.onclick()}):s.attr("href",Galaxy.root+"user/"+e),this.$table.append(i)},_templateLink:function(e){return'<tr><td><div class="ui-panel-icon fa '+e.icon+'"></td><td><a class="ui-panel-anchor" href="javascript:void(0)">'+e.title+'</a><div class="ui-form-info">'+e.description+"</div></td></tr>"},_templateFooter:function(e){return'<p class="ui-panel-footer">You are using <strong>'+e.nice_total_disk_usage+"</strong> of disk space in this Galaxy instance. "+(Galaxy.config.enable_quotas?"Your disk quota is: <strong>"+e.quota+"</strong>. ":"")+'Is your usage more than expected? 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diff --git a/static/scripts/bundled/extended.bundled.js b/static/scripts/bundled/extended.bundled.js
index 47967961aad..e0f8e3d3225 100644
--- a/static/scripts/bundled/extended.bundled.js
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n=["HistoryDatasetAssociation","HistoryDatasetCollectionAssociation"];return e.isObject(t)&&t.id&&e.contains(n,t.model_class)},copy:function(t){var n,r,a;e.isString(t)?(n=t,a="hda",r="dataset"):(n=t.id,a={HistoryDatasetAssociation:"hda",LibraryDatasetDatasetAssociation:"ldda",HistoryDatasetCollectionAssociation:"hdca"}[t.model_class]||"hda",r="hdca"===a?"dataset_collection":"dataset");var o=this,s=i.ajax(this.url(),{method:"POST",contentType:"application/json",data:JSON.stringify({content:n,source:a,type:r})}).done(function(e){o.add([e],{parse:!0})}).fail(function(e,t,i){o.trigger("error",o,s,{},"Error copying contents",{type:r,id:n,source:a})});return s},createHDCA:function(e,t,n,i,r){return this.model({history_content_type:"dataset_collection",collection_type:t,history_id:this.historyId,name:n,hide_source_items:i||!1,element_identifiers:e}).save(r)},haveSearchDetails:function(){return this.allFetched&&this.all(function(t){return e.has(t.attributes,"annotation")})},matches:function(e){return this.filter(function(t){return t.matches(e)})},clone:function(){var e=r.Collection.prototype.clone.call(this);return e.historyId=this.historyId,e},toString:function(){return["HistoryContents(",[this.historyId,this.length].join(),")"].join("")}});t.default={HistoryContents:x}}).call(t,n(1),n(0),n(2))},function(e,t,n){"use strict";(function(e,i,r,a){function o(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=n(20),l=o(s),c=n(8),d=o(c),u=n(10),h=o(u),f=n(4),p=o(f),g=n(3),m=o(g),_=l.default.ListItemView,v=_.extend({_logNamespace:"dataset",className:_.prototype.className+" dataset",id:function(){return["dataset",this.model.get("id")].join("-")},initialize:function(e){e.logger&&(this.logger=this.model.logger=e.logger),this.log(this+".initialize:",e),_.prototype.initialize.call(this,e),this.linkTarget=e.linkTarget||"_blank"},_setUpListeners:function(){_.prototype._setUpListeners.call(this);var t=this;return t.listenTo(t.model,{change:function(n){t.model.changedAttributes().state&&t.model.inReadyState()&&t.expanded&&!t.model.hasDetails()?t.model.fetch({silent:!0}).done(function(){t.render()}):e.has(n.changed,"tags")&&1===e.keys(n.changed).length?t.$(".nametags").html(t._renderNametags()):t.render()}})},_fetchModelDetails:function(){var e=this;return e.model.inReadyState()&&!e.model.hasDetails()?e.model.fetch({silent:!0}):i.when()},remove:function(e,t){var n=this;e=e||this.fxSpeed,this.$el.fadeOut(e,function(){r.View.prototype.remove.call(n),t&&t.call(n)})},_swapNewRender:function(e){return _.prototype._swapNewRender.call(this,e),this.model.has("state")&&this.$el.addClass("state-"+this.model.get("state")),this.$el},_renderPrimaryActions:function(){return[this._renderDisplayButton()]},_renderDisplayButton:function(){var e=this.model.get("state");if(e===d.default.NOT_VIEWABLE||e===d.default.DISCARDED||!this.model.get("accessible"))return null;var t={target:this.linkTarget,classes:"display-btn"};if(this.model.get("purged"))t.disabled=!0,t.title=(0,m.default)("Cannot display datasets removed from disk");else if(e===d.default.UPLOAD)t.disabled=!0,t.title=(0,m.default)("This dataset must finish uploading before it can be viewed");else if(e===d.default.NEW)t.disabled=!0,t.title=(0,m.default)("This dataset is not yet viewable");else{t.title=(0,m.default)("View data"),t.href=this.model.urls.display;var n=this;t.onclick=function(e){Galaxy.frame&&Galaxy.frame.active&&(Galaxy.frame.addDataset(n.model.get("id")),e.preventDefault())}}return t.faIcon="fa-eye",(0,h.default)(t)},_renderDetails:function(){if(this.model.get("state")===d.default.NOT_VIEWABLE)return a(this.templates.noAccess(this.model.toJSON(),this));var e=_.prototype._renderDetails.call(this);return e.find(".actions .left").empty().append(this._renderSecondaryActions()),e.find(".summary").html(this._renderSummary()).prepend(this._renderDetailMessages()),e.find(".display-applications").html(this._renderDisplayApplications()),this._setUpBehaviors(e),e},_renderSummary:function(){var e=this.model.toJSON(),t=this.templates.summaries[e.state];return(t=t||this.templates.summaries.unknown)(e,this)},_renderDetailMessages:function(){var t=this,n=a('<div class="detail-messages"></div>'),i=t.model.toJSON();return e.each(t.templates.detailMessages,function(e){n.append(a(e(i,t)))}),n},_renderDisplayApplications:function(){return this.model.isDeletedOrPurged()?"":[this.templates.displayApplications(this.model.get("display_apps"),this),this.templates.displayApplications(this.model.get("display_types"),this)].join("")},_renderSecondaryActions:function(){switch(this.debug("_renderSecondaryActions"),this.model.get("state")){case d.default.NOT_VIEWABLE:return[];case d.default.OK:case d.default.FAILED_METADATA:case d.default.ERROR:return[this._renderDownloadButton(),this._renderShowParamsButton()]}return[this._renderShowParamsButton()]},_renderShowParamsButton:function(){return(0,h.default)({title:(0,m.default)("View details"),classes:"params-btn",href:this.model.urls.show_params,target:this.linkTarget,faIcon:"fa-info-circle",onclick:function(e){Galaxy.frame&&Galaxy.frame.active&&(Galaxy.frame.add({title:(0,m.default)("Dataset details"),url:this.href}),e.preventDefault(),e.stopPropagation())}})},_renderDownloadButton:function(){return this.model.get("purged")||!this.model.hasData()?null:e.isEmpty(this.model.get("meta_files"))?a('\n                <a class="download-btn icon-btn" href="'+this.model.urls.download+'" title="'+(0,m.default)("Download")+'">\n                    <span class="fa fa-floppy-o"></span>\n                </a>'):this._renderMetaFileDownloadButton()},_renderMetaFileDownloadButton:function(){var t=this.model.urls;return a('\n                <div class="metafile-dropdown dropdown">\n                    <a class="download-btn icon-btn" href="'+t.download+'" data-toggle="dropdown" title="'+(0,m.default)("Download")+'">\n                        <span class="fa fa-floppy-o"></span>\n                    </a>\n                    <ul class="dropdown-menu" role="menu" aria-labelledby="dLabel">\n                        <li>\n                            <a href="'+t.download+'">\n                                '+(0,m.default)("Download dataset")+"\n                            </a>\n                        </li>\n                        "+e.map(this.model.get("meta_files"),function(e){return'<li>\n                                    <a href="'+(t.meta_download+e.file_type)+'">\n                                        '+(0,m.default)("Download")+" "+e.file_type+"\n                                    </a>\n                                </li>"})+"\n                    </ul>\n                </div>")},_renderNametags:function(){return e.template(["<% _.each(_.sortBy(_.uniq(tags), function(x) { return x }), function(tag){ %>",'<% if (tag.indexOf("name:") == 0){ %>','<span class="label label-info"><%- tag.slice(5) %></span>',"<% } %>","<% }); %>"].join(""))({tags:this.model.get("tags")})},events:e.extend(e.clone(_.prototype.events),{"click .display-btn":function(e){this.trigger("display",this,e)},"click .params-btn":function(e){this.trigger("params",this,e)},"click .download-btn":function(e){this.trigger("download",this,e)}}),toString:function(){return"DatasetListItemView("+(this.model?""+this.model:"(no model)")+")"}});v.prototype.templates=function(){var t=e.extend({},_.prototype.templates.warnings,{failed_metadata:p.default.wrapTemplate(['<% if( model.state === "failed_metadata" ){ %>','<div class="warningmessagesmall">',(0,m.default)("An error occurred setting the metadata for this dataset"),"</div>","<% } %>"]),error:p.default.wrapTemplate(["<% if( model.error ){ %>",'<div class="errormessagesmall">',(0,m.default)("There was an error getting the data for this dataset"),": <%- model.error %>","</div>","<% } %>"]),purged:p.default.wrapTemplate(["<% if( model.purged ){ %>",'<div class="purged-msg warningmessagesmall">',(0,m.default)("This dataset has been deleted and removed from disk"),"</div>","<% } %>"]),deleted:p.default.wrapTemplate(["<% if( model.deleted && !model.purged ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,m.default)("This dataset has been deleted"),"</div>","<% } %>"])}),n=p.default.wrapTemplate(['<div class="details">','<div class="summary"></div>','<div class="actions clear">','<div class="left"></div>','<div class="right"></div>',"</div>","<% if( !dataset.deleted && !dataset.purged ){ %>",'<div class="tags-display"></div>','<div class="annotation-display"></div>','<div class="display-applications"></div>',"<% if( dataset.peek ){ %>",'<pre class="dataset-peek"><%= dataset.peek %></pre>',"<% } %>","<% } %>","</div>"],"dataset"),i=p.default.wrapTemplate(['<div class="details">','<div class="summary">',(0,m.default)("You do not have permission to view this dataset"),"</div>","</div>"],"dataset"),r={};r[d.default.OK]=r[d.default.FAILED_METADATA]=p.default.wrapTemplate(["<% if( dataset.misc_blurb ){ %>",'<div class="blurb">','<span class="value"><%- dataset.misc_blurb %></span>',"</div>","<% } %>","<% if( dataset.file_ext ){ %>",'<div class="datatype">','<label class="prompt">',(0,m.default)("format"),"</label>",'<span class="value"><%- dataset.file_ext %></span>',"</div>","<% } %>","<% if( dataset.metadata_dbkey ){ %>",'<div class="dbkey">','<label class="prompt">',(0,m.default)("database"),"</label>",'<span class="value">',"<%- dataset.metadata_dbkey %>","</span>","</div>","<% } %>","<% if( dataset.misc_info ){ %>",'<div class="info">','<span class="value"><%- dataset.misc_info %></span>',"</div>","<% } %>"],"dataset"),r[d.default.NEW]=p.default.wrapTemplate(["<div>",(0,m.default)("This is a new dataset and not all of its data are available yet"),"</div>"],"dataset"),r[d.default.NOT_VIEWABLE]=p.default.wrapTemplate(["<div>",(0,m.default)("You do not have permission to view this dataset"),"</div>"],"dataset"),r[d.default.DISCARDED]=p.default.wrapTemplate(["<div>",(0,m.default)("The job creating this dataset was cancelled before completion"),"</div>"],"dataset"),r[d.default.QUEUED]=p.default.wrapTemplate(["<div>",(0,m.default)("This job is waiting to run"),"</div>"],"dataset"),r[d.default.RUNNING]=p.default.wrapTemplate(["<div>",(0,m.default)("This job is currently running"),"</div>"],"dataset"),r[d.default.UPLOAD]=p.default.wrapTemplate(["<div>",(0,m.default)("This dataset is currently uploading"),"</div>"],"dataset"),r[d.default.SETTING_METADATA]=p.default.wrapTemplate(["<div>",(0,m.default)("Metadata is being auto-detected"),"</div>"],"dataset"),r[d.default.PAUSED]=p.default.wrapTemplate(["<div>",(0,m.default)('This job is paused. Use the "Resume Paused Jobs" in the history menu to resume'),"</div>"],"dataset"),r[d.default.ERROR]=p.default.wrapTemplate(["<% if( !dataset.purged ){ %>","<div><%- dataset.misc_blurb %></div>","<% } %>",'<span class="help-text">',(0,m.default)("An error occurred with this dataset"),":</span>",'<div class="job-error-text"><%- dataset.misc_info %></div>'],"dataset"),r[d.default.EMPTY]=p.default.wrapTemplate(["<div>",(0,m.default)("No data"),": <i><%- dataset.misc_blurb %></i></div>"],"dataset"),r.unknown=p.default.wrapTemplate(['<div>Error: unknown dataset state: "<%- dataset.state %>"</div>'],"dataset");var a={resubmitted:p.default.wrapTemplate(["<% if( model.resubmitted ){ %>",'<div class="resubmitted-msg infomessagesmall">',(0,m.default)("The job creating this dataset has been resubmitted"),"</div>","<% } %>"])},o=p.default.wrapTemplate(["<% _.each( apps, function( app ){ %>",'<div class="display-application">','<span class="display-application-location"><%- app.label %></span> ','<span class="display-application-links">',"<% _.each( app.links, function( link ){ %>",'<a target="<%- link.target %>" href="<%- link.href %>">',"<% print( _l( link.text ) ); %>","</a> ","<% }); %>","</span>","</div>","<% }); %>"],"apps");return e.extend({},_.prototype.templates,{warnings:t,details:n,noAccess:i,summaries:r,detailMessages:a,displayApplications:o})}(),t.default={DatasetListItemView:v}}).call(t,n(1),n(0),n(2),n(0))},function(e,t,n){"use strict";(function(e){Object.defineProperty(t,"__esModule",{value:!0});var i=n(316),r=function(e){return e&&e.__esModule?e:{default:e}}(i),a=e.Model.extend({urlRoot:Galaxy.root+"api/libraries/",isVisible:function(e){var t=!0;return!e&&this.get("deleted")&&(t=!1),t}}),o=e.Collection.extend({urlRoot:Galaxy.root+"api/libraries",model:a,initialize:function(e){e=e||{}},search:function(e){if(""==e)return this;var t=e.toLowerCase();return this.filter(function(e){return-1!==e.get("name").toLowerCase().indexOf(t)})},getVisible:function(e,t){return t=t||[],new o(this.filter(function(t){return t.isVisible(e)}))},sortLibraries:function(e,t){this.comparator=r.default.generateLibraryComparator(e,t),this.sort()}}),s=e.Model.extend({}),l=s.extend({urlRoot:Galaxy.root+"api/libraries/datasets/"}),c=s.extend({urlRoot:Galaxy.root+"api/folders/"}),d=e.Collection.extend({model:s,sortFolder:function(e,t){this.comparator=r.default.generateFolderComparator(e,t),this.sort()}}),u=e.Model.extend({defaults:{folder:new d,urlRoot:Galaxy.root+"api/folders/",id:"unknown"},parse:function(e){this.get("folder").reset();for(var t=0;t<e.folder_contents.length;t++)if("folder"===e.folder_contents[t].type){var n=new c(e.folder_contents[t]);this.get("folder").add(n)}else if("file"===e.folder_contents[t].type){var i=new l(e.folder_contents[t]);this.get("folder").add(i)}else Galaxy.emit.error("Unknown folder item type encountered while parsing response.");return e}}),h=e.Model.extend({urlRoot:Galaxy.root+"api/histories/"}),f=e.Collection.extend({urlRoot:Galaxy.root+"api/histories/",initialize:function(e){this.id=e.id},url:function(){return this.urlRoot+this.id+"/contents"},model:h}),p=e.Model.extend({urlRoot:Galaxy.root+"api/histories/"}),g=e.Collection.extend({url:Galaxy.root+"api/histories",model:p}),m=e.Model.extend({urlRoot:Galaxy.root+"api/remote_files"});t.default={Library:a,Libraries:o,Item:l,Ldda:l,FolderAsModel:c,Folder:d,FolderContainer:u,HistoryItem:h,HistoryContents:f,GalaxyHistory:p,GalaxyHistories:g,Jstree:m}}).call(t,n(2))},,function(e,t,n){"use strict";(function(e,i,r,a){function o(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=n(4),l=o(s),c=n(3),d=(o(c),e.View.extend(l.default.LoggableMixin).extend({_logNamespace:"list",initialize:function(e){this.expanded=e.expanded||!1,this.log("\t expanded:",this.expanded),this.fxSpeed=void 0!==e.fxSpeed?e.fxSpeed:this.fxSpeed},fxSpeed:"fast",render:function(e){var t=this._buildNewRender();return this._setUpBehaviors(t),this._queueNewRender(t,e),this},_buildNewRender:function(){var e=i(this.templates.el(this.model.toJSON(),this));return this.expanded&&this.$details(e).replaceWith(this._renderDetails().show()),e},_queueNewRender:function(e,t){t=void 0===t?this.fxSpeed:t;var n=this;0===t?(n._swapNewRender(e),n.trigger("rendered",n)):i(n).queue("fx",[function(e){n.$el.fadeOut(t,e)},function(t){n._swapNewRender(e),t()},function(e){n.$el.fadeIn(t,e)},function(e){n.trigger("rendered",n),e()}])},_swapNewRender:function(e){return this.$el.empty().attr("class",r.isFunction(this.className)?this.className():this.className).append(e.children())},_setUpBehaviors:function(e){e=e||this.$el,e.find("[title]").tooltip({placement:"bottom"})},$details:function(e){return e=e||this.$el,e.find("> .details")},_renderDetails:function(){var e=i(this.templates.details(this.model.toJSON(),this));return this._setUpBehaviors(e),e},toggleExpanded:function(e){return e=void 0===e?!this.expanded:e,e?this.expand():this.collapse(),this},expand:function(){var e=this;return e._fetchModelDetails().always(function(){e._expand()})},_fetchModelDetails:function(){return this.model.hasDetails()?a.when():this.model.fetch()},_expand:function(){var e=this,t=e._renderDetails();e.$details().replaceWith(t),e.expanded=!0,e.$details().slideDown(e.fxSpeed,function(){e.trigger("expanded",e)})},collapse:function(){this.debug(this+"(ExpandableView).collapse");var e=this;e.expanded=!1,this.$details().slideUp(e.fxSpeed,function(){e.trigger("collapsed",e)})}})),u=d.extend(l.default.mixin(l.default.SelectableViewMixin,l.default.DraggableViewMixin,{tagName:"div",className:"list-item",initialize:function(e){d.prototype.initialize.call(this,e),l.default.SelectableViewMixin.initialize.call(this,e),l.default.DraggableViewMixin.initialize.call(this,e),this._setUpListeners()},_setUpListeners:function(){return this.on("selectable",function(e){e?this.$(".primary-actions").hide():this.$(".primary-actions").show()},this),this},_buildNewRender:function(){var e=d.prototype._buildNewRender.call(this);return e.children(".warnings").replaceWith(this._renderWarnings()),e.children(".title-bar").replaceWith(this._renderTitleBar()),e.children(".primary-actions").append(this._renderPrimaryActions()),e.find("> .title-bar .subtitle").replaceWith(this._renderSubtitle()),e},_swapNewRender:function(e){return d.prototype._swapNewRender.call(this,e),this.selectable&&this.showSelector(0),this.draggable&&this.draggableOn(),this.$el},_renderWarnings:function(){var e=this,t=i('<div class="warnings"></div>'),n=e.model.toJSON();return r.each(e.templates.warnings,function(r){t.append(i(r(n,e)))}),t},_renderTitleBar:function(){return i(this.templates.titleBar(this.model.toJSON(),this))},_renderPrimaryActions:function(){return[]},_renderSubtitle:function(){return i(this.templates.subtitle(this.model.toJSON(),this))},events:{"click .title-bar":"_clickTitleBar","keydown .title-bar":"_keyDownTitleBar","click .selector":"toggleSelect"},_clickTitleBar:function(e){e.stopPropagation(),e.altKey?(this.toggleSelect(e),this.selectable||this.showSelector()):this.toggleExpanded()},_keyDownTitleBar:function(e){return!e||"keydown"!==e.type||32!==e.keyCode&&13!==e.keyCode||(this.toggleExpanded(),e.stopPropagation(),!1)},toString:function(){return"ListItemView("+(this.model?""+this.model:"(no model)")+")"}}));u.prototype.templates=function(){return{el:l.default.wrapTemplate(['<div class="list-element">','<div class="warnings"></div>','<div class="selector">','<span class="fa fa-2x fa-square-o"></span>',"</div>",'<div class="primary-actions"></div>','<div class="title-bar"></div>','<div class="details"></div>',"</div>"]),warnings:{},titleBar:l.default.wrapTemplate(['<div class="title-bar clear" tabindex="0">','<span class="state-icon"></span>','<div class="title">','<span class="name"><%- element.name %></span>',"</div>",'<div class="subtitle"></div>',"</div>"],"element"),subtitle:l.default.wrapTemplate(['<div class="subtitle"></div>']),details:l.default.wrapTemplate(['<div class="details"></div>'])}}();var h=u.extend({foldoutStyle:"foldout",foldoutPanelClass:null,initialize:function(e){"drilldown"===this.foldoutStyle&&(this.expanded=!1),this.foldoutStyle=e.foldoutStyle||this.foldoutStyle,this.foldoutPanelClass=e.foldoutPanelClass||this.foldoutPanelClass,u.prototype.initialize.call(this,e),this.foldout=this._createFoldoutPanel()},_renderDetails:function(){if("drilldown"===this.foldoutStyle)return i();var e=u.prototype._renderDetails.call(this);return this._attachFoldout(this.foldout,e)},_createFoldoutPanel:function(){var e=this.model,t=this._getFoldoutPanelClass(e),n=this._getFoldoutPanelOptions(e);return new t(r.extend(n,{model:e}))},_getFoldoutPanelClass:function(){return this.foldoutPanelClass},_getFoldoutPanelOptions:function(){return{foldoutStyle:this.foldoutStyle,fxSpeed:this.fxSpeed}},_attachFoldout:function(e,t){return t=t||this.$("> .details"),this.foldout=e.render(0),e.$("> .controls").hide(),t.append(e.$el)},expand:function(){var e=this;return e._fetchModelDetails().always(function(){"foldout"===e.foldoutStyle?e._expand():"drilldown"===e.foldoutStyle&&e._expandByDrilldown()})},_expandByDrilldown:function(){var e=this;e.listenTo(e.foldout,"close",function(){e.trigger("collapsed:drilldown",e,e.foldout)}),e.trigger("expanded:drilldown",e,e.foldout)}});h.prototype.templates=function(){var e=l.default.wrapTemplate(['<div class="details">',"</div>"],"collection");return r.extend({},u.prototype.templates,{details:e})}(),t.default={ExpandableView:d,ListItemView:u,FoldoutListItemView:h}}).call(t,n(2),n(0),n(1),n(0))},function(e,t,n){"use strict";(function(e,i){function r(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=n(4),o=r(a),s=n(3),l=r(s),c=e.View.extend(o.default.LoggableMixin).extend(o.default.HiddenUntilActivatedViewMixin).extend({tagName:"div",className:"tags-display",select_width:"100%",events:{},initialize:function(e){this.show_editor=!1,!1===e.usePrompt?this.label="":this.label='<label class="prompt">'+(0,l.default)("Tags")+"</label>",this.workflow_mode=e.workflow_mode||!1,this.workflow_mode&&(this.events.click="showEditor",this.events.keydown="keydownHandler"),this.hiddenUntilActivated(e.$activator,e)},render:function(){var e=this;return this.workflow_mode?this.$el.html(this._workflowTemplate()):this.$el.html(this._defaultTemplate()),this.$input().select2({placeholder:"Add tags",width:this.workflow_mode?this.width:this.select_width,tags:function(){return e._getTagsUsed()}}),this._setUpBehaviors(),this},_hashToName:function(e){return e.startsWith("#")?"name:"+e.slice(1):e},_nameToHash:function(e){return e.startsWith("name:")&&(e="#"+e.slice(5)),e},_defaultTemplate:function(){return[this.label,this._renderEditor()].join("")},_workflowTemplate:function(){return[this.show_editor?this._renderEditor():this._renderTags()].join(" ")},keydownHandler:function(e){switch(e.which){case 27:this.hideEditor()}},showEditor:function(){this.show_editor=!0,this.render()},hideEditor:function(){this.show_editor=!1,this.render()},_renderEditor:function(){return'<input class="tags-input" value="'+this.tagsToCSV()+'"/>'},_renderTags:function(){var e=this.model.get("tags"),t=Galaxy.root+"static/images/fugue/tag--plus.png",n=[];return i.each(e,function(e){e=0==e.indexOf("name:")?e.slice(5):e;var t='<span class="label label-info">'+e+"</span>";n.push(t)}),0===n.length&&n.push("<img src="+t+' class="add-tag-button" title="Add tags"/>'),n.join(" ")},tagsToCSV:function(){var e=this,t=this.model.get("tags");return!i.isArray(t)||i.isEmpty(t)?"":t.map(function(t){return i.escape(e._nameToHash(t))}).sort().join(",")},$input:function(){return this.$el.find("input.tags-input")},_getTagsUsed:function(){var e=this;return i.map(Galaxy.user.get("tags_used"),e._nameToHash)},_setUpBehaviors:function(){var e=this;this.$input().on("change",function(t){t.val=i.map(t.val,e._hashToName),e.model.save({tags:t.val}),t.added&&e._addNewTagToTagsUsed(""+t.added.text)})},_addNewTagToTagsUsed:function(e){var t=Galaxy.user.get("tags_used");i.contains(t,e)||(t.push(e),t.sort(),Galaxy.user.set("tags_used",t))},remove:function(){this.$input.off(),this.stopListening(this.model),e.View.prototype.remove.call(this)},toString:function(){return["TagsEditor(",""+this.model,")"].join("")}});t.default={TagsEditor:c}}).call(t,n(2),n(1))},,,,,,function(e,t,n){"use strict";(function(e){function i(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var r=n(28),a=i(r),o=n(51),s=i(o),l=n(3),c=(i(l),s.default.HistoryContentMixin),d=a.default.DatasetCollection,u=d.extend(c).extend({defaults:e.extend(e.clone(d.prototype.defaults),{history_content_type:"dataset_collection",model_class:"HistoryDatasetCollectionAssociation"}),save:function(e,t){return this.isNew()&&(t=t||{},t.url=this.urlRoot+this.get("history_id")+"/contents",e=e||{},e.type="dataset_collection"),d.prototype.save.call(this,e,t)},toString:function(){return"History"+d.prototype.toString.call(this)}});t.default={HistoryDatasetCollection:u}}).call(t,n(1))},function(e,t,n){"use strict";(function(e,i,r){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=n(50),s=a(o),l=n(4),c=a(l),d=n(3),u=(a(d),{defaults:{model_class:"DatasetCollectionElement",element_identifier:null,element_index:null,element_type:null},_mergeObject:function(t){return e.extend(t,t.object,{element_id:t.id}),delete 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e=this.get("file_ext"),t=this.get("element_identifier");return"?to_ext="+e+"&hdca_id="+this.get("parent_hdca_id")+"&element_identifier="+t},constructor:function(e,t){this.debug("\t DatasetDCE.constructor:",e,t),u.constructor.call(this,e,t)},hasDetails:function(){return this.elements&&this.elements.length},toString:function(){this.get("element_identifier");return"DatasetDCE({objStr})"}})),g=f.extend({model:p,toString:function(){return["DatasetDCECollection(",this.length,")"].join("")}}),m=i.Model.extend(c.default.LoggableMixin).extend(c.default.SearchableModelMixin).extend({_logNamespace:"collections",defaults:{collection_type:null,deleted:!1},collectionClass:function(){return this.attributes.collection_type.indexOf(":")>0?v:g},initialize:function(e,t){this.debug(this+"(DatasetCollection).initialize:",e,t,this),this.elements=this._createElementsModel(),this.on("change:elements",function(){this.log("change:elements"),this.elements=this._createElementsModel()})},_createElementsModel:function(){var t=this.collectionClass();this.debug(this+"._createElementsModel",t,this.get("elements"),this.elements);var n=this.get("elements")||[];this.unset("elements",{silent:!0});var i=this;return e.each(n,function(t,n){e.extend(t,{parent_hdca_id:i.get("id")})}),this.elements=new t(n),this.elements},toJSON:function(){var e=i.Model.prototype.toJSON.call(this);return this.elements&&(e.elements=this.elements.toJSON()),e},inReadyState:function(){var e=this.get("populated");return this.isDeletedOrPurged()||e},hasDetails:function(){return 0!==this.elements.length},getVisibleContents:function(e){return this.elements},parse:function(e,t){var n=i.Model.prototype.parse.call(this,e,t);return n.create_time&&(n.create_time=new Date(n.create_time)),n.update_time&&(n.update_time=new Date(n.update_time)),n},delete:function(e){return this.get("deleted")?r.when():this.save({deleted:!0},e)},undelete:function(e){return!this.get("deleted")||this.get("purged")?r.when():this.save({deleted:!1},e)},isDeletedOrPurged:function(){return this.get("deleted")||this.get("purged")},searchAttributes:["name","tags"],toString:function(){return"DatasetCollection("+[this.get("id"),this.get("name")||this.get("element_identifier")].join(",")+")"}}),_=m.extend(c.default.mixin(u,{constructor:function(e,t){this.debug("\t NestedDCDCE.constructor:",e,t),u.constructor.call(this,e,t)},toString:function(){return["NestedDCDCE(",this.object?""+this.object:this.get("element_identifier"),")"].join("")}})),v=f.extend({model:_,toString:function(){return["NestedDCDCECollection(",this.length,")"].join("")}});t.default={DatasetCollection:m}}).call(t,n(1),n(2),n(0))},function(e,t,n){"use strict";(function(e,i,r,a){function o(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=n(16),l=o(s),c=n(30),d=(o(c),n(56)),u=o(d),h=n(5),f=o(h),p=n(4),g=o(p),m=n(3),_=o(m),v=e.Model.extend(g.default.LoggableMixin).extend(g.default.mixin(g.default.SearchableModelMixin,{_logNamespace:"history",UPDATE_DELAY:4e3,defaults:{model_class:"History",id:null,name:"Unnamed 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t+=this.contents.includeDeleted?e.deleted:0,t+=this.contents.includeHidden?e.hidden:0},nice_size:function(){var e=this.get("size");return e?f.default.bytesToString(e,!0,2):(0,_.default)("(empty)")},toJSON:function(){return r.extend(e.Model.prototype.toJSON.call(this),{nice_size:this.nice_size()})},get:function(t){return"nice_size"===t?this.nice_size():e.Model.prototype.get.apply(this,arguments)},ownedByCurrUser:function(){return!(!Galaxy||!Galaxy.user)&&(!Galaxy.user.isAnonymous()&&Galaxy.user.id===this.get("user_id"))},numOfUnfinishedJobs:function(){var e=this.get("non_ready_jobs");return e?e.length:0},numOfUnfinishedShownContents:function(){return this.contents.runningAndActive().length||0},_fetchContentRelatedAttributes:function(){var e=["size","non_ready_jobs","contents_active","hid_counter"];return this.fetch({data:a.param({keys:e.join(",")})})},refresh:function(e){var t=this;e=e||{};var n=this.lastUpdateTime;return this.contents.allFetched=!1,(0!==this.contents.currentPage?function(){return t.contents.fetchPage(t.contents.currentPage)}:function(){return t.contents.fetchUpdated(n)})().done(function(n,i,r){var a;try{a=new Date(r.getResponseHeader("Date"))}catch(e){}t.lastUpdateTime=a||new Date,t.checkForUpdates(e)})},checkForUpdates:function(e){var t=this;e=e||{};var n=this.UPDATE_DELAY;if(this.id){var i=function(){t.clearUpdateTimeout(),t.updateTimeoutId=setTimeout(function(){t.refresh(e)},n)};this.numOfUnfinishedShownContents()>0?i():this._fetchContentRelatedAttributes().done(function(e){t.numOfUnfinishedJobs()>0?i():t.trigger("ready")})}},clearUpdateTimeout:function(){this.updateTimeoutId&&(clearTimeout(this.updateTimeoutId),this.updateTimeoutId=null)},stopPolling:function(){this.clearUpdateTimeout(),this.contents&&this.contents.stopPolling()},parse:function(t,n){var i=e.Model.prototype.parse.call(this,t,n);return i.create_time&&(i.create_time=new Date(i.create_time)),i.update_time&&(i.update_time=new Date(i.update_time)),i},fetchWithContents:function(e,t){e=e||{};var n=this;return e.view="dev-detailed",this.fetch(e).then(function(e){return n.contents.history=n,n.contents.setHistoryId(e.id),n.fetchContents(t)})},fetchContents:function(e){e=e||{};var t=this;return t.lastUpdateTime=new Date,t.contents.fetchCurrentPage(e)},_delete:function(e){return this.get("deleted")?i.when():this.save({deleted:!0},e)},purge:function(e){return this.get("purged")?i.when():this.save({deleted:!0,purged:!0},e)},undelete:function(e){return this.get("deleted")?this.save({deleted:!1},e):i.when()},copy:function(e,t,n){if(e=void 0===e||e,!this.id)throw new Error("You must set the history ID before copying it.");var r={history_id:this.id};e&&(r.current=!0),t&&(r.name=t),n||(r.all_datasets=!1),r.view="dev-detailed";var a=this,o=i.post(this.urlRoot,r);return e?o.then(function(e){return new v(e).setAsCurrent().done(function(){a.trigger("copied",a,e)})}):o.done(function(e){a.trigger("copied",a,e)})},setAsCurrent:function(){var e=this,t=i.getJSON(Galaxy.root+"history/set_as_current?id="+this.id);return t.done(function(){e.trigger("set-as-current",e)}),t},toString:function(){return"History("+this.get("id")+","+this.get("name")+")"}})),y=u.default.InfinitelyScrollingCollection,b=y.extend(g.default.LoggableMixin).extend({_logNamespace:"history",model:v,order:"update_time",limitOnFirstFetch:10,limitPerFetch:10,initialize:function(e,t){t=t||{},this.log("HistoryCollection.initialize",e,t),y.prototype.initialize.call(this,e,t),this.includeDeleted=t.includeDeleted||!1,this.currentHistoryId=t.currentHistoryId,this.setUpListeners()},urlRoot:Galaxy.root+"api/histories",url:function(){return this.urlRoot},setUpListeners:function(){return this.on({"change:deleted":function(e){this.debug("change:deleted",this.includeDeleted,e.get("deleted")),!this.includeDeleted&&e.get("deleted")&&this.remove(e)},copied:function(e,t){this.setCurrent(new v(t,[]))},"set-as-current":function(e){var t=this.currentHistoryId;this.trigger("no-longer-current",t),this.currentHistoryId=e.id}})},_buildFetchData:function(e){return r.extend(y.prototype._buildFetchData.call(this,e),{view:"dev-detailed"})},_buildFetchFilters:function(e){var t=y.prototype._buildFetchFilters.call(this,e)||{},n={};return this.includeDeleted?n.deleted=null:(n.deleted=!1,n.purged=!1),r.defaults(t,n)},fetchFirst:function(e){var t=this,n=a.when();return this.currentHistoryId&&(n=y.prototype.fetchFirst.call(t,{silent:!0,limit:1,filters:{purged:"",deleted:"","encoded_id-in":this.currentHistoryId}})),n.then(function(){return e=e||{},e.offset=0,t.fetchMore(e)})},comparators:r.extend(r.clone(y.prototype.comparators),{name:g.default.buildComparator("name",{ascending:!0}),"name-dsc":g.default.buildComparator("name",{ascending:!1}),size:g.default.buildComparator("size",{ascending:!1}),"size-asc":g.default.buildComparator("size",{ascending:!0})}),sort:function(e){e=e||{};var t=e.silent,n=this.remove(this.get(this.currentHistoryId));return y.prototype.sort.call(this,r.defaults({silent:!0},e)),this.unshift(n,{silent:!0}),t||this.trigger("sort",this,e),this},create:function(e,t,n,r){var a=this;return i.getJSON(Galaxy.root+"history/create_new_current").done(function(e){a.setCurrent(new v(e,[],n||{}))})},setCurrent:function(e,t){return t=t||{},this.unshift(e,t),this.currentHistoryId=e.get("id"),t.silent||this.trigger("new-current",e,this),this},toString:function(){return"HistoryCollection("+this.length+",current:"+this.currentHistoryId+")"}});t.default={History:v,HistoryCollection:b}}).call(t,n(2),n(0),n(1),n(0))},function(e,t,n){"use strict";(function(e){Object.defineProperty(t,"__esModule",{value:!0});var i=n(4),r=function(e){return e&&e.__esModule?e:{default:e}}(i),a=r.default.SessionStorageModel.extend({defaults:{expandedIds:{},show_deleted:!1,show_hidden:!1},addExpanded:function(e){var t=this.get("expandedIds");t[e.id]=e.get("id"),this.save("expandedIds",t)},removeExpanded:function(e){var t=this.get("expandedIds");delete t[e.id],this.save("expandedIds",t)},isExpanded:function(t){return e.result(this.get("expandedIds"),t,!1)},allExpanded:function(){return e.values(this.get("expandedIds"))},clearExpanded:function(){this.set("expandedIds",{})},includeDeleted:function(t){return e.isUndefined(t)||this.set("show_deleted",t),this.get("show_deleted")},includeHidden:function(t){return e.isUndefined(t)||this.set("show_hidden",t),this.get("show_hidden")},toString:function(){return"HistoryPrefs("+this.id+")"}},{storageKeyPrefix:"history:",historyStorageKey:function(e){if(!e)throw new Error("HistoryPrefs.historyStorageKey needs valid id: "+e);return a.storageKeyPrefix+e},get:function(e){return new a({id:a.historyStorageKey(e)})},clearAll:function(e){for(var t in sessionStorage)0===t.indexOf(a.storageKeyPrefix)&&sessionStorage.removeItem(t)}});t.default={HistoryPrefs:a}}).call(t,n(1))},function(e,t,n){"use strict";(function(e){function n(e,t){if(!e)throw new ReferenceError("this hasn't been initialised - super() hasn't been called");return!t||"object"!=typeof t&&"function"!=typeof t?e:t}function i(e,t){if("function"!=typeof t&&null!==t)throw new TypeError("Super expression must either be null or a function, not "+typeof 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t(e).deferred}}]),t}(),l=function(e){function t(e){r(this,t);var i=n(this,(t.__proto__||Object.getPrototypeOf(t)).call(this,e));return i.names={},i}return i(t,e),o(t,[{key:"add",value:function(e){if(!e.hasOwnProperty("name")||!e.hasOwnProperty("fn"))throw new Error('NamedAjaxQueue.add requires an object with both "name" and "fn": '+JSON.stringify(e));if(!this.names.hasOwnProperty(e.name))return this.names[e.name]=!0,a(t.prototype.__proto__||Object.getPrototypeOf(t.prototype),"add",this).call(this,e.fn)}},{key:"clear",value:function(){return this.names={},this}}],[{key:"create",value:function(e){return new t(e).deferred}}]),t}(s);t.default={AjaxQueue:s,NamedAjaxQueue:l}}).call(t,n(0))},function(e,t,n){"use strict";(function(e,i,r){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=n(20),s=a(o),l=n(17),c=a(l),d=n(4),u=a(d),h=n(3),f=a(h),p=s.default.FoldoutListItemView,g=s.default.ListItemView,m=p.extend({className:p.prototype.className+" dataset-collection",id:function(){return["dataset_collection",this.model.get("id")].join("-")},initialize:function(e){this.linkTarget=e.linkTarget||"_blank",this.hasUser=e.hasUser,p.prototype.initialize.call(this,e)},_setUpListeners:function(){p.prototype._setUpListeners.call(this),this.listenTo(this.model,"change",function(t,n){e.has(t.changed,"deleted")?this.render():e.has(t.changed,"element_count")&&this.$("> .title-bar .subtitle").replaceWith(this._renderSubtitle())})},_renderSubtitle:function(){return i(this.templates.subtitle(this.model.toJSON(),this))},_getFoldoutPanelOptions:function(){var t=p.prototype._getFoldoutPanelOptions.call(this);return e.extend(t,{linkTarget:this.linkTarget,hasUser:this.hasUser})},$selector:function(){return this.$("> 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class="subtitle"></div>',"</div>"],"collection"),i=u.default.wrapTemplate(['<div class="subtitle">','<% var countText = collection.element_count? ( collection.element_count + " " ) : ""; %>','<%        if( collection.collection_type === "list" ){ %>',(0,f.default)("a list of <%- countText %>datasets"),'<% } else if( collection.collection_type === "paired" ){ %>',(0,f.default)("a pair of datasets"),'<% } else if( collection.collection_type === "list:paired" ){ %>',(0,f.default)("a list of <%- countText %>dataset pairs"),'<% } else if( collection.collection_type === "list:list" ){ %>',(0,f.default)("a list of <%- countText %>dataset lists"),"<% } %>","</div>"],"collection");return e.extend({},p.prototype.templates,{warnings:t,titleBar:n,subtitle:i})}();var _=g.extend({className:g.prototype.className+" dataset-collection-element",initialize:function(e){e.logger&&(this.logger=this.model.logger=e.logger),this.log("DCEListItemView.initialize:",e),g.prototype.initialize.call(this,e)},toString:function(){return"DCEListItemView("+(this.model?""+this.model:"(no model)")+")"}});_.prototype.templates=function(){var t=u.default.wrapTemplate(['<div class="title-bar clear" tabindex="0">','<div class="title">','<span class="name"><%- element.element_identifier %></span>',"</div>",'<div class="subtitle"></div>',"</div>"],"element");return e.extend({},g.prototype.templates,{titleBar:t})}();var v=c.default.DatasetListItemView.extend({className:c.default.DatasetListItemView.prototype.className+" dataset-collection-element",initialize:function(e){e.logger&&(this.logger=this.model.logger=e.logger),this.log("DatasetDCEListItemView.initialize:",e),c.default.DatasetListItemView.prototype.initialize.call(this,e)},_fetchModelDetails:function(){var e=this;return e.model.inReadyState()&&!e.model.hasDetails()?e.model.fetch({silent:!0}):r.when()},toString:function(){return"DatasetDCEListItemView("+(this.model?""+this.model:"(no model)")+")"}});v.prototype.templates=function(){var t=u.default.wrapTemplate(['<div class="title-bar clear" tabindex="0">','<span class="state-icon"></span>','<div class="title">','<span class="name"><%- element.element_identifier %></span>',"</div>","</div>"],"element");return e.extend({},c.default.DatasetListItemView.prototype.templates,{titleBar:t})}();var y=m.extend({className:m.prototype.className+" dataset-collection-element",_swapNewRender:function(e){m.prototype._swapNewRender.call(this,e);var t=this.model.get("state")||"ok";return this.$el.addClass("state-"+t),this.$el},toString:function(){return"NestedDCDCEListItemView("+(this.model?""+this.model:"(no model)")+")"}});t.default={DCListItemView:m,DCEListItemView:_,DatasetDCEListItemView:v,NestedDCDCEListItemView:y}}).call(t,n(1),n(0),n(0))},function(e,t,n){"use strict";(function(e,n){Object.defineProperty(t,"__esModule",{value:!0});var i=e.Model.extend({defaults:{url:"https://toolshed.g2.bx.psu.edu/",name:"Galaxy Main Tool Shed"},urlRoot:Galaxy.root+"api/tool_shed"}),r=e.Collection.extend({url:Galaxy.root+"api/tool_shed",model:i}),a=e.Model.extend({defaults:[{}],urlRoot:Galaxy.root+"api/tool_shed/contents"}),o=e.Collection.extend({url:Galaxy.root+"api/tool_shed/contents",model:a}),s=e.Model.extend({defaults:[{}],urlRoot:Galaxy.root+"api/tool_shed/category"}),l=e.Collection.extend({url:Galaxy.root+"api/tool_shed/category",model:s}),c=e.Model.extend({defaults:[{}],urlRoot:Galaxy.root+"api/tool_shed/repository"}),d=e.Collection.extend({url:Galaxy.root+"api/tool_shed/repository",model:c}),u=e.Model.extend({url:"#"}),h=e.Collection.extend({url:"#",model:u,fetch:function(){var t=this,i=Array(),r=JSON.parse(localStorage.repositories),a=Object.keys(r);return n.each(a,function(e){var t=r[e];t.queue_key=e,i.push(t)}),t.reset(i),e.Collection.prototype.fetch.call(this)}}),f=e.Model.extend({defaults:[{}],urlRoot:Galaxy.root+"api/tool_shed/status"}),p=e.Collection.extend({url:Galaxy.root+"api/tool_shed/status",model:f}),g=e.Model.extend({defaults:[{}],urlRoot:Galaxy.root+"api/workflows?missing_tools=True"}),m=e.Collection.extend({url:Galaxy.root+"api/workflows?missing_tools=True",model:g});t.default={ShedModel:i,ShedsCollection:r,Category:a,Categories:o,CategoryModel:s,CategoryCollection:l,RepositoryModel:c,RepositoryCollection:d,RepoQueue:h,RepoStatus:p,WorkflowTools:m}}).call(t,n(2),n(1))},function(e,t,n){"use strict";(function(e){Object.defineProperty(t,"__esModule",{value:!0});var n=function(t,n){var i=this,r=this.shed_url,a=Galaxy.root+"api/tool_shed/search";e.get(a,{term:t.term,tool_shed_url:r},function(e){var t=i.shedParser(e);n(t)})},i=function(t){var n=[],i=t.hits;return e.each(i,function(e){var t=i[e],r=t.repository.name+" by "+t.repository.repo_owner_username+": "+t.repository.description,a={value:t.repository.id,label:r};n.push(a)}),n},r=function(e){"/"==e.tool_shed_url.substr(-1)&&(e.tool_shed_url=e.tool_shed_url.substr(0,e.tool_shed_url.length-1));var t=e.tool_shed_url+"|"+e.repository_id+"|"+e.changeset_revision,n=new Object;localStorage.repositories&&(n=JSON.parse(localStorage.repositories)),n[t]=e,localStorage.repositories=JSON.stringify(n)},a=function(){if(localStorage.hasOwnProperty("repositories")){var e=JSON.parse(localStorage.repositories);return Object.keys(e).length}return 0};t.default={searchShed:n,shedParser:i,addToQueue:r,queueLength:a}}).call(t,n(0))},function(e,t,n){"use strict";(function(e,i,r,a){function o(e){return e&&e.__esModule?e:{default:e}}function s(e,t){var n=e.toJSON();return M(n,{defaultHideSourceItems:t,creationFn:function(t,n,i){return t=t.map(function(e){return{id:e.id,name:e.name,src:"dataset"===e.history_content_type?"hda":"hdca"}}),e.createHDCA(t,"list",n,i)}})}Object.defineProperty(t,"__esModule",{value:!0});var l=n(27),c=o(l),d=n(8),u=o(d),h=n(4),f=o(h),p=n(52),g=o(p),m=n(9),_=o(m),v=n(53),y=(o(v),n(3)),b=o(y);n(54);var w=e.View.extend(f.default.LoggableMixin).extend({_logNamespace:"collections",tagName:"li",className:"collection-element",initialize:function(e){this.element=e.element||{},this.selected=e.selected||!1},render:function(){this.dragStartHandler=i.bind(this._dragstart,this),this.dragEndHandler=i.bind(this._dragend,this);var e=this.$el.attr("data-element-id",this.element.id).attr("draggable",!0).html(this.template({element:this.element})).get(0);return e.addEventListener("dragstart",this.dragStartHandler,!1),e.addEventListener("dragend",this.dragEndHandler,!1),this.selected&&this.$el.addClass("selected"),this},template:i.template(['<a class="name" title="',(0,b.default)("Click to rename"),'" href="javascript:void(0)">',"<%- element.name %>","</a>",'<button class="discard btn btn-sm" title="',(0,b.default)("Remove this dataset from the list"),'">',(0,b.default)("Discard"),"</button>"].join("")),select:function(e){this.$el.toggleClass("selected",e),this.trigger("select",{source:this,selected:this.$el.hasClass("selected")})},discard:function(){var e=this,t=this.$el.parent().width();this.$el.animate({"margin-right":t},"fast",function(){e.trigger("discard",{source:e}),e.destroy()})},destroy:function(){this.off(),this.$el.remove()},events:{click:"_click","click .name":"_clickName","click .discard":"_clickDiscard",dragover:"_sendToParent",drop:"_sendToParent"},_click:function(e){e.stopPropagation(),this.select(e)},_clickName:function(e){e.stopPropagation(),e.preventDefault();var t=([(0,b.default)("Enter a new name for the element"),":\n(",(0,b.default)("Note that changing the name here will not rename the dataset"),")"].join(""),prompt((0,b.default)("Enter a new name for the element")+":",this.element.name));t&&(this.element.name=t,this.render())},_clickDiscard:function(e){e.stopPropagation(),this.discard()},_dragstart:function(e){e.originalEvent&&(e=e.originalEvent),e.dataTransfer.effectAllowed="move",e.dataTransfer.setData("text/plain",JSON.stringify(this.element)),this.$el.addClass("dragging"),this.$el.parent().trigger("collection-element.dragstart",[this])},_dragend:function(e){this.$el.removeClass("dragging"),this.$el.parent().trigger("collection-element.dragend",[this])},_sendToParent:function(e){this.$el.parent().trigger(e)},toString:function(){return"DatasetCollectionElementView()"}}),x=e.View.extend(f.default.LoggableMixin).extend(g.default.CollectionCreatorMixin).extend({_logNamespace:"collections",elementViewClass:w,collectionClass:c.default.HistoryDatasetCollection,className:"list-collection-creator collection-creator flex-row-container",minElements:1,defaultAttributes:{creationFn:function(){throw new TypeError("no creation fn for creator")},oncreate:function(){},oncancel:function(){},autoscrollDist:24,highlightClr:"rgba( 64, 255, 255, 1.0 )"},footerSettings:{".hide-originals":"hideOriginals"},initialize:function(e){this.metric("ListCollectionCreator.initialize",e);var t=this;i.each(this.defaultAttributes,function(n,i){n=e[i]||n,t[i]=n}),t.initialElements=e.elements||[],this._setUpCommonSettings(e),this._instanceSetUp(),this._elementsSetUp(),this._setUpBehaviors()},_instanceSetUp:function(){this.selectedIds={},this.$dragging=null,this.blocking=!1},_elementsSetUp:function(){this.invalidElements=[],this.workingElements=[],this.elementViews=[],this.workingElements=this.initialElements.slice(0),this._ensureElementIds(),this._validateElements(),this._mangleDuplicateNames(),this._sortElements()},_ensureElementIds:function(){return this.workingElements.forEach(function(e){e.hasOwnProperty("id")||(e.id=i.uniqueId())}),this.workingElements},_validateElements:function(){var e=this;return e.invalidElements=[],this.workingElements=this.workingElements.filter(function(t){var n=e._isElementInvalid(t);return n&&e.invalidElements.push({element:t,text:n}),!n}),this.workingElements},_isElementInvalid:function(e){return"dataset"!==e.history_content_type?(0,b.default)("is not a dataset"):e.state===u.default.OK||i.contains(u.default.NOT_READY_STATES,e.state)?e.deleted||e.purged?(0,b.default)("has been deleted or purged"):null:(0,b.default)("has errored, is paused, or is not accessible")},_mangleDuplicateNames:function(){var e=1,t={};this.workingElements.forEach(function(n){for(var i=n.name;t.hasOwnProperty(i);)if(i=n.name+" ("+e+")",(e+=1)>=900)throw new Error("Safety hit in while loop - thats impressive");n.name=i,t[n.name]=!0})},_sortElements:function(e){},render:function(e,t){return this.workingElements.length<this.minElements?this._renderInvalid(e,t):(this.$el.empty().html(this.templates.main()),this._renderHeader(e),this._renderMiddle(e),this._renderFooter(e),this._addPluginComponents(),this.$(".collection-name").focus(),this.trigger("rendered",this),this)},_renderInvalid:function(e,t){return this.$el.empty().html(this.templates.invalidInitial({problems:this.invalidElements,elements:this.workingElements})),"function"==typeof this.oncancel&&this.$(".cancel-create.btn").show(),this.trigger("rendered",this),this},_renderHeader:function(e,t){var n=this.$(".header").empty().html(this.templates.header()).find(".help-content").prepend(r(this.templates.helpContent()));return this.invalidElements.length&&this._invalidElementsAlert(),n},_renderMiddle:function(e,t){var n=this.$(".middle").empty().html(this.templates.middle());return this._renderList(e),n},_addPluginComponents:function(){this.$(".help-content i").hoverhighlight(".collection-creator",this.highlightClr)},_invalidElementsAlert:function(){this._showAlert(this.templates.invalidElements({problems:this.invalidElements}),"alert-warning")},_disableNameAndCreate:function(e){(e=!!i.isUndefined(e)||e)&&(this.$(".collection-name").prop("disabled",!0),this.$(".create-collection").toggleClass("disabled",!0))},$list:function(){return this.$(".collection-elements")},_renderClearSelected:function(){i.size(this.selectedIds)?this.$(".collection-elements-controls > .clear-selected").show():this.$(".collection-elements-controls > .clear-selected").hide()},_renderList:function(e,t){var n=this,r=a("<div/>"),o=n.$list();i.each(this.elementViews,function(e){e.destroy(),n.removeElementView(e)}),n.workingElements.forEach(function(e){var t=n._createElementView(e);r.append(t.$el)}),n._renderClearSelected(),o.empty().append(r.children()),i.invoke(n.elementViews,"render"),o.height()>o.css("max-height")?o.css("border-width","1px 0px 1px 0px"):o.css("border-width","0px")},_createElementView:function(e){var t=new this.elementViewClass({element:e,selected:i.has(this.selectedIds,e.id)});return this.elementViews.push(t),this._listenToElementView(t),t},_listenToElementView:function(e){var t=this;t.listenTo(e,{select:function(e){var n=e.source.element;e.selected?t.selectedIds[n.id]=!0:delete t.selectedIds[n.id],t.trigger("elements:select",e)},discard:function(e){t.trigger("elements:discard",e)}})},addElementView:function(e){},removeElementView:function(e){delete this.selectedIds[e.element.id],this._renderClearSelected(),this.elementViews=i.without(this.elementViews,e),this.stopListening(e)},_renderNoElementsLeft:function(){this._disableNameAndCreate(!0),this.$(".collection-elements").append(this.templates.noElementsLeft())},_elementToJSON:function(e){return e},createList:function(e){if(!this.workingElements.length){var t=(0,b.default)("No valid elements for final list")+". ";return t+='<a class="cancel-create" href="javascript:void(0);">'+(0,b.default)("Cancel")+"</a> ",t+=(0,b.default)("or"),t+=' <a class="reset" href="javascript:void(0);">'+(0,b.default)("start over")+"</a>.",void this._showAlert(t)}var n=this,i=this.workingElements.map(function(e){return n._elementToJSON(e)});return n.blocking=!0,n.creationFn(i,e,n.hideOriginals).always(function(){n.blocking=!1}).fail(function(e,t,i){n.trigger("error",{xhr:e,status:t,message:(0,b.default)("An error occurred while creating this collection")})}).done(function(e,t,i){n.trigger("collection:created",e,t,i),n.metric("collection:created",e),"function"==typeof n.oncreate&&n.oncreate.call(this,e,t,i)})},_setUpBehaviors:function(){return this.on("error",this._errorHandler),this.once("rendered",function(){this.trigger("rendered:initial",this)}),this.on("elements:select",function(e){this._renderClearSelected()}),this.on("elements:discard",function(e){var t=e.source.element;this.removeElementView(e.source),this.workingElements=i.without(this.workingElements,t),this.workingElements.length||this._renderNoElementsLeft()}),this},_errorHandler:function(e){this.error(e);var t=this,n=e.message||(0,b.default)("An error occurred");if(e.xhr){var i=e.xhr,r=e.message;0===i.readyState&&0===i.status?n+=": "+(0,b.default)("Galaxy could not be reached and may be updating.")+(0,b.default)(" Try again in a few minutes."):i.responseJSON?n+=":<br /><pre>"+JSON.stringify(i.responseJSON)+"</pre>":n+=": "+r}t._showAlert(n,"alert-danger")},events:{"click .more-help":"_clickMoreHelp","click .less-help":"_clickLessHelp","click .main-help":"_toggleHelp","click .header .alert button":"_hideAlert","click .reset":"reset","click .clear-selected":"clearSelectedElements","click .collection-elements":"clearSelectedElements","dragover .collection-elements":"_dragoverElements","drop .collection-elements":"_dropElements","collection-element.dragstart .collection-elements":"_elementDragstart","collection-element.dragend   .collection-elements":"_elementDragend","change .collection-name":"_changeName","keydown .collection-name":"_nameCheckForEnter","change .hide-originals":"_changeHideOriginals","click .cancel-create":"_cancelCreate","click .create-collection":"_clickCreate"},reset:function(){this._instanceSetUp(),this._elementsSetUp(),this.render()},clearSelectedElements:function(e){this.$(".collection-elements .collection-element").removeClass("selected"),this.$(".collection-elements-controls > .clear-selected").hide()},_dragoverElements:function(e){e.preventDefault();var t=this.$list();this._checkForAutoscroll(t,e.originalEvent.clientY);var n=this._getNearestElement(e.originalEvent.clientY);this.$(".element-drop-placeholder").remove();var i=r('<div class="element-drop-placeholder"></div>');n.length?n.before(i):t.append(i)},_checkForAutoscroll:function(e,t){var n=e.offset(),i=e.scrollTop(),r=t-n.top,a=n.top+e.outerHeight()-t;r>=0&&r<this.autoscrollDist?e.scrollTop(i-2):a>=0&&a<this.autoscrollDist&&e.scrollTop(i+2)},_getNearestElement:function(e){for(var t=this.$(".collection-elements li.collection-element").toArray(),n=0;n<t.length;n++){var i=r(t[n]),a=i.offset().top,o=Math.floor(i.outerHeight()/2)+4;if(a+o>e&&a-o<e)return i}return r()},_dropElements:function(e){e.originalEvent&&(e=e.originalEvent),e.preventDefault(),e.dataTransfer.dropEffect="move";var t=this._getNearestElement(e.clientY);return t.length?this.$dragging.insertBefore(t):this.$dragging.insertAfter(this.$(".collection-elements .collection-element").last()),this._syncOrderToDom(),!1},_syncOrderToDom:function(){var e=this,t=[];this.$(".collection-elements .collection-element").each(function(){var n=r(this).attr("data-element-id"),a=i.findWhere(e.workingElements,{id:n});a?t.push(a):console.error("missing element: ",n)}),this.workingElements=t,this._renderList()},_elementDragstart:function(e,t){t.select(!0),this.$dragging=this.$(".collection-elements .collection-element.selected")},_elementDragend:function(e,t){r(".element-drop-placeholder").remove(),this.$dragging=null},templates:i.extend({},g.default.CollectionCreatorMixin._creatorTemplates,{header:i.template(['<div class="main-help well clear">','<a class="more-help" href="javascript:void(0);">',(0,b.default)("More help"),"</a>",'<div class="help-content">','<a class="less-help" href="javascript:void(0);">',(0,b.default)("Less"),"</a>","</div>","</div>",'<div class="alert alert-dismissable">','<button type="button" class="close" data-dismiss="alert" ','title="',(0,b.default)("Close and show more help"),'" aria-hidden="true">&times;</button>','<span class="alert-message"></span>',"</div>"].join("")),middle:i.template(['<div class="collection-elements-controls">','<a class="reset" href="javascript:void(0);" ','title="',(0,b.default)("Undo all reordering and discards"),'">',(0,b.default)("Start over"),"</a>",'<a class="clear-selected" href="javascript:void(0);" ','title="',(0,b.default)("De-select all selected datasets"),'">',(0,b.default)("Clear selected"),"</a>","</div>",'<div class="collection-elements scroll-container flex-row">',"</div>"].join("")),footer:i.template(['<div class="attributes clear">','<div class="clear">','<label class="setting-prompt pull-right">',(0,b.default)("Hide original elements"),"?",'<input class="hide-originals pull-right" type="checkbox" />',"</label>","</div>",'<div class="clear">','<input class="collection-name form-control pull-right" ','placeholder="',(0,b.default)("Enter a name for your new collection"),'" />','<div class="collection-name-prompt pull-right">',(0,b.default)("Name"),":</div>","</div>","</div>",'<div class="actions clear vertically-spaced">','<div class="other-options pull-left">','<button class="cancel-create btn" tabindex="-1">',(0,b.default)("Cancel"),"</button>",'<div class="create-other btn-group dropup">','<button class="btn btn-default dropdown-toggle" data-toggle="dropdown">',(0,b.default)("Create a different kind of collection"),' <span class="caret"></span>',"</button>",'<ul class="dropdown-menu" role="menu">','<li><a href="#">',(0,b.default)("Create a <i>single</i> pair"),"</a></li>",'<li><a href="#">',(0,b.default)("Create a list of <i>unpaired</i> datasets"),"</a></li>","</ul>","</div>","</div>",'<div class="main-options pull-right">','<button class="create-collection btn btn-primary">',(0,b.default)("Create list"),"</button>","</div>","</div>"].join("")),helpContent:i.template(["<p>",(0,b.default)(["Collections of datasets are permanent, ordered lists of datasets that can be passed to tools and ","workflows in order to have analyses done on each member of the entire group. This interface allows ","you to create a collection and re-order the final collection."].join("")),"</p>","<ul>","<li>",(0,b.default)(["Rename elements in the list by clicking on ",'<i data-target=".collection-element .name">the existing name</i>.'].join("")),"</li>","<li>",(0,b.default)(["Discard elements from the final created list by clicking on the ",'<i data-target=".collection-element .discard">"Discard"</i> button.'].join("")),"</li>","<li>",(0,b.default)(["Reorder the list by clicking and dragging elements. Select multiple elements by clicking on ",'<i data-target=".collection-element">them</i> and you can then move those selected by dragging the ',"entire group. Deselect them by clicking them again or by clicking the ",'the <i data-target=".clear-selected">"Clear selected"</i> link.'].join("")),"</li>","<li>",(0,b.default)(['Click the <i data-target=".reset">"Start over"</i> link to begin again as if you had just opened ',"the interface."].join("")),"</li>","<li>",(0,b.default)(['Click the <i data-target=".cancel-create">"Cancel"</i> button to exit the interface.'].join("")),"</li>","</ul><br />","<p>",(0,b.default)(['Once your collection is complete, enter a <i data-target=".collection-name">name</i> and ','click <i data-target=".create-collection">"Create list"</i>.'].join("")),"</p>"].join("")),invalidElements:i.template([(0,b.default)("The following selections could not be included due to problems:"),"<ul><% _.each( problems, function( problem ){ %>","<li><b><%- problem.element.name %></b>: <%- problem.text %></li>","<% }); %></ul>"].join("")),noElementsLeft:i.template(['<li class="no-elements-left-message">',(0,b.default)("No elements left! "),(0,b.default)("Would you like to "),'<a class="reset" href="javascript:void(0)">',(0,b.default)("start over"),"</a>?","</li>"].join("")),invalidInitial:i.template(['<div class="header flex-row no-flex">','<div class="alert alert-warning" style="display: block">','<span class="alert-message">',"<% if( _.size( problems ) ){ %>",(0,b.default)("The following selections could not be included due to problems"),":","<ul><% _.each( problems, function( problem ){ %>","<li><b><%- problem.element.name %></b>: <%- problem.text %></li>","<% }); %></ul>","<% } else if( _.size( elements ) < 1 ){ %>",(0,b.default)("No datasets were selected"),".","<% } %>","<br />",(0,b.default)("At least one element is needed for the collection"),". ",(0,b.default)("You may need to "),'<a class="cancel-create" href="javascript:void(0)">',(0,b.default)("cancel"),"</a> ",(0,b.default)("and reselect new elements"),".","</span>","</div>","</div>",'<div class="footer flex-row no-flex">','<div class="actions clear vertically-spaced">','<div class="other-options pull-left">','<button class="cancel-create btn" tabindex="-1">',(0,b.default)("Cancel"),"</button>","</div>","</div>","</div>"].join(""))}),toString:function(){return"ListCollectionCreator"}}),k=function(e,t,n){var r,o=a.Deferred(),s=Galaxy.modal||new _.default.View;return t=i.defaults(t||{},{elements:e,oncancel:function(){s.hide(),o.reject("cancelled")},oncreate:function(e,t){s.hide(),o.resolve(t)}}),r=new n(t),s.show({title:t.title||(0,b.default)("Create a collection"),body:r.$el,width:"80%",height:"100%",closing_events:!0}),r.render(),window._collectionCreator=r,o},M=function(e,t){return t=t||{},t.title=(0,b.default)("Create a collection from a list of datasets"),k(e,t,x)};t.default={DatasetCollectionElementView:w,ListCollectionCreator:x,collectionCreatorModal:k,listCollectionCreatorModal:M,createListCollection:s}}).call(t,n(2),n(1),n(0),n(0))},function(e,t,n){"use strict";(function(e,i){function r(t,n,i){return Galaxy.modal.show({title:n,body:t,closing_events:!0,buttons:{Ok:function(){Galaxy.modal.hide()}}}),Galaxy.modal.$el.addClass("error-modal"),i&&(Galaxy.modal.$(".error-details").add(Galaxy.modal.$('button:contains("Details")')).remove(),e("<div/>").addClass("error-details").hide().appendTo(Galaxy.modal.$(".modal-content")).append([e("<p/>").text(p),e("<pre/>").text(JSON.stringify(i,null,"  "))]),e('<button id="button-1" class="pull-left">'+(0,u.default)("Details")+"</button>").appendTo(Galaxy.modal.$(".buttons")).click(function(){Galaxy.modal.$(".error-details").toggle()})),Galaxy.modal}function a(e,t,n){if(e){if(e=(0,u.default)(e),t=(0,u.default)(t)||(0,u.default)("Error:"),window.Galaxy&&Galaxy.modal)return r(e,t,n);alert(t+"\n\n"+e),console.log("error details:",JSON.stringify(n))}}function o(){return a((0,u.default)("You appear to be offline. Please check your connection and try again."),(0,u.default)("Offline?"))}function s(){return a((0,u.default)("Galaxy is currently unreachable. Please try again in a few minutes.")+" "+h,(0,u.default)("Cannot connect to Galaxy"))}function l(e,t,n,i,r){return i=i||f,i+=" "+h,r=r||(0,u.default)("An error occurred"),a(i,r,c(e,t,n))}function c(e,t,n){return{raven:i.result(window.Raven,"lastEventId"),userAgent:navigator.userAgent,onLine:navigator.onLine,version:i.result(Galaxy.config,"version_major"),xhr:i.omit(t,i.functions(t)),options:i.omit(n,"xhr"),url:i.result(Galaxy.lastAjax,"url"),data:i.result(Galaxy.lastAjax,"data"),model:i.result(e,"toJSON",""+e),user:i.omit(i.result(Galaxy.user,"toJSON"),"email")}}Object.defineProperty(t,"__esModule",{value:!0});var d=n(3),u=function(e){return e&&e.__esModule?e:{default:e}}(d),h=(0,u.default)("Please contact a Galaxy administrator if the problem persists."),f=(0,u.default)("An error occurred while updating information with the server."),p=(0,u.default)("The following information can assist the developers in finding the source of the error:");t.default={errorModal:a,offlineErrorModal:o,badGatewayErrorModal:s,ajaxErrorModal:l}}).call(t,n(0),n(1))},function(e,t,n){"use strict";(function(e){function i(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var r=n(50),a=i(r),o=n(51),s=i(o),l=n(4),c=i(l),d=n(3),u=(i(d),a.default.DatasetAssociation),h=s.default.HistoryContentMixin,f=u.extend(c.default.mixin(h,{defaults:e.extend({},u.prototype.defaults,h.defaults,{history_content_type:"dataset",model_class:"HistoryDatasetAssociation"})}));t.default={HistoryDatasetAssociation:f}}).call(t,n(1))},function(e,t,n){"use strict";(function(e,i,r){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=n(20),s=a(o),l=n(93),c=a(l),d=n(4),u=a(d),h=n(3),f=a(h);n(39);var p=e.View.extend(u.default.LoggableMixin).extend({_logNamespace:"list",viewClass:s.default.ListItemView,collectionClass:e.Collection,tagName:"div",className:"list-panel",fxSpeed:"fast",emptyMsg:(0,f.default)("This list is empty"),noneFoundMsg:(0,f.default)("No matching items found"),searchPlaceholder:(0,f.default)("search"),initialize:function(e,t){e=e||{},e.logger&&(this.logger=e.logger),this.log(this+".initialize:",e),this.fxSpeed=i.has(e,"fxSpeed")?e.fxSpeed:this.fxSpeed,this.filters=[],this.searchFor=e.searchFor||"",this.selecting=void 0===e.selecting||e.selecting,this.selected=e.selected||[],this.lastSelected=null,this.dragItems=e.dragItems||!1,this.viewClass=e.viewClass||this.viewClass,this.views=[],this.collection=e.collection||this._createDefaultCollection(),this.filters=e.filters||[],this.$scrollContainer=e.$scrollContainer||this.$scrollContainer,this.title=e.title||"",this.subtitle=e.subtitle||"",this._setUpListeners()},_setUpListeners:function(){return this.off(),this.on({error:function(e,t,n,i,r){console.error(e,t,n,i,r)},loading:function(){this._showLoadingIndicator("loading...",40)},"loading-done":function(){this._hideLoadingIndicator(40)}}),this.once("rendered",function(){this.trigger("rendered:initial",this)}),this._setUpCollectionListeners(),this._setUpViewListeners(),this},_createDefaultCollection:function(){return new this.collectionClass([])},_setUpCollectionListeners:function(){return this.log(this+"._setUpCollectionListeners",this.collection),this.stopListening(this.collection),this.listenTo(this.collection,{error:function(e,t,n,i,r){this.trigger("error",e,t,n,i,r)},update:function(e,t){var n=t.changes;return t.renderAll||n.added.length+n.removed.length>1?this.renderItems():1===n.added.length?this.addItemView(i.first(n.added),e,t):1===n.removed.length?this.removeItemView(i.first(n.removed),e,t):void 0}}),this},_setUpViewListeners:function(){this.log(this+"._setUpViewListeners"),this.on({"view:selected":function(e,t){if(t&&t.shiftKey&&this.lastSelected){var n=this.viewFromModelId(this.lastSelected);n&&this.selectRange(e,n)}else t&&t.altKey&&!this.selecting&&this.showSelectors();this.selected.push(e.model.id),this.lastSelected=e.model.id},"view:de-selected":function(e,t){this.selected=i.without(this.selected,e.model.id)}})},render:function(e){this.log(this+".render",e);var t=this._buildNewRender();return this._setUpBehaviors(t),this._queueNewRender(t,e),this},_buildNewRender:function(){this.debug(this+"(ListPanel)._buildNewRender");var e=r(this.templates.el({},this));return this._renderControls(e),this._renderTitle(e),this._renderSubtitle(e),this._renderSearch(e),this.renderItems(e),e},_renderControls:function(e){this.debug(this+"(ListPanel)._renderControls");var t=r(this.templates.controls({},this));return e.find(".controls").replaceWith(t),t},_renderTitle:function(e){},_renderSubtitle:function(e){},_queueNewRender:function(e,t){t=void 0===t?this.fxSpeed:t;var n=this;n.log("_queueNewRender:",e,t),r(n).queue("fx",[function(e){n.$el.fadeOut(t,e)},function(t){n._swapNewRender(e),t()},function(e){n.$el.fadeIn(t,e)},function(e){n.trigger("rendered",n),e()}])},_swapNewRender:function(e){return this.$el.empty().attr("class",this.className).append(e.children()),this.selecting&&this.showSelectors(0),this},_setUpBehaviors:function(e){return e=e||this.$el,this.$controls(e).find("[title]").tooltip(),this._renderMultiselectActionMenu(e),this},_renderMultiselectActionMenu:function(e){e=e||this.$el;var t=e.find(".list-action-menu"),n=this.multiselectActions();if(!n.length)return t.empty();var i=r(['<div class="list-action-menu btn-group">','<button class="list-action-menu-btn btn btn-default dropdown-toggle" data-toggle="dropdown">',(0,f.default)("For all selected"),"...","</button>",'<ul class="dropdown-menu pull-right" role="menu">',"</ul>","</div>"].join("")),a=n.map(function(e){var t=['<li><a href="javascript:void(0);">',e.html,"</a></li>"].join("");return r(t).click(function(t){return t.preventDefault(),e.func(t)})});return i.find("ul").append(a),t.replaceWith(i),i},multiselectActions:function(){return[]},$scrollContainer:function(e){return(e||this.$el).parent().parent()},$controls:function(e){return(e||this.$el).find("> .controls")},$list:function(e){return(e||this.$el).find("> .list-items")},$messages:function(e){return(e||this.$el).find("> .controls .messages")},$emptyMessage:function(e){return(e||this.$el).find("> .empty-message")},renderItems:function(e){e=e||this.$el;var t=this;t.log(this+".renderItems",e);var n=t.$list(e);t.freeViews();var i=t._filterCollection();return t.views=i.map(function(e){return t._createItemView(e)}),n.empty(),t.views.length&&t._attachItems(e),t._renderEmptyMessage(e).toggle(!t.views.length),t.trigger("views:ready",t.views),t.views},_filterCollection:function(){var e=this;return e.collection.filter(i.bind(e._filterItem,e))},_filterItem:function(e){var t=this;return i.every(t.filters.map(function(t){return t.call(e)}))&&(!t.searchFor||e.matchesAll(t.searchFor))},_createItemView:function(e){var t=this._getItemViewClass(e),n=i.extend(this._getItemViewOptions(e),{model:e}),r=new t(n);return this._setUpItemViewListeners(r),r},_destroyItemView:function(e){this.stopListening(e),this.views=i.without(this.views,e)},_destroyItemViews:function(e){var t=this;return t.views.forEach(function(e){t.stopListening(e)}),t.views=[],t},freeViews:function(){return this._destroyItemViews()},_getItemViewClass:function(e){return this.viewClass},_getItemViewOptions:function(e){return{fxSpeed:this.fxSpeed,expanded:!1,selectable:this.selecting,selected:i.contains(this.selected,e.id),draggable:this.dragItems}},_setUpItemViewListeners:function(e){var t=this;return this.listenTo(e,"all",function(){var e=Array.prototype.slice.call(arguments,0);e[0]="view:"+e[0],t.trigger.apply(t,e)}),this.listenTo(e,"draggable:dragstart",function(e,t){var n={},i=this.getSelectedModels();n=i.length?i.toJSON():[t.model.toJSON()],e.dataTransfer.setData("text",JSON.stringify(n))},this),t},_attachItems:function(e){var t=this;return this.$list(e).append(this.views.map(function(e){return t._renderItemView$el(e)})),this},_renderItemView$el:function(e){return e.render(0).$el},_renderEmptyMessage:function(e){this.debug("_renderEmptyMessage",e,this.searchFor);var t=this.searchFor?this.noneFoundMsg:this.emptyMsg;return this.$emptyMessage(e).text(t)},expandAll:function(){i.each(this.views,function(e){e.expand()})},collapseAll:function(){i.each(this.views,function(e){e.collapse()})},addItemView:function(e,t,n){var i=this,a=i._filterCollection().indexOf(e);if(-1!==a){var o=i._createItemView(e);return r(o).queue("fx",[function(e){i.$emptyMessage().is(":visible")?i.$emptyMessage().fadeOut(i.fxSpeed,e):e()},function(e){i._attachView(o,a),e()}]),o}},_attachView:function(e,t,n){n=!!i.isUndefined(n)||n,t=t||0;var r=this;return r.views.splice(t,0,e),r._insertIntoListAt(t,r._renderItemView$el(e).hide()),r.trigger("view:attached",e),n?e.$el.slideDown(r.fxSpeed,function(){r.trigger("view:attached:rendered")}):(e.$el.show(),r.trigger("view:attached:rendered")),e},_insertIntoListAt:function(e,t){var n=this.$list();return 0===e?n.prepend(t):n.children().eq(e-1).after(t),t},removeItemView:function(e,t,n){var a=this,o=i.find(a.views,function(t){return t.model===e});if(o)return a.views=i.without(a.views,o),a.trigger("view:removed",o),r({}).queue("fx",[function(e){o.$el.fadeOut(a.fxSpeed,e)},function(e){o.remove(),a.trigger("view:removed:rendered"),a.views.length?e():a._renderEmptyMessage().fadeIn(a.fxSpeed,e)}]),o},viewFromModelId:function(e){return i.find(this.views,function(t){return t.model.id===e})},viewFromModel:function(e){return e?this.viewFromModelId(e.id):void 0},viewsWhereModel:function(e){return this.views.filter(function(t){return i.isMatch(t.model.attributes,e)})},viewRange:function(e,t){if(e===t)return e?[e]:[];var n=this.views.indexOf(e),i=this.views.indexOf(t);return-1===n||-1===i?n===i?[]:-1===n?[t]:[e]:n<i?this.views.slice(n,i+1):this.views.slice(i,n+1)},_renderSearch:function(e){return e.find(".controls .search-input").searchInput({placeholder:this.searchPlaceholder,initialVal:this.searchFor,onfirstsearch:i.bind(this._firstSearch,this),onsearch:i.bind(this.searchItems,this),onclear:i.bind(this.clearSearch,this)}),e},_firstSearch:function(e){return this.log("onFirstSearch",e),this.searchItems(e)},searchItems:function(e,t){if(this.log("searchItems",e,this.searchFor,t),!t&&this.searchFor===e)return this;this.searchFor=e,this.renderItems(),this.trigger("search:searching",e,this);var n=this.$("> .controls .search-query");return n.val()!==e&&n.val(e),this},clearSearch:function(e){return this.searchFor="",this.trigger("search:clear",this),this.$("> .controls .search-query").val(""),this.renderItems(),this},THROTTLE_SELECTOR_FX_AT:20,showSelectors:function(e){e=void 0!==e?e:this.fxSpeed,this.selecting=!0,this.$(".list-actions").slideDown(e),e=this.views.length>=this.THROTTLE_SELECTOR_FX_AT?0:e,i.each(this.views,function(t){t.showSelector(e)})},hideSelectors:function(e){e=void 0!==e?e:this.fxSpeed,this.selecting=!1,this.$(".list-actions").slideUp(e),e=this.views.length>=this.THROTTLE_SELECTOR_FX_AT?0:e,i.each(this.views,function(t){t.hideSelector(e)}),this.selected=[],this.lastSelected=null},toggleSelectors:function(){this.selecting?this.hideSelectors():this.showSelectors()},selectAll:function(e){i.each(this.views,function(t){t.select(e)})},deselectAll:function(e){this.lastSelected=null,i.each(this.views,function(t){t.deselect(e)})},selectRange:function(e,t){var n=this.viewRange(e,t);return i.each(n,function(e){e.select()}),n},getSelectedViews:function(){return i.filter(this.views,function(e){return e.selected})},getSelectedModels:function(){return new this.collection.constructor(i.map(this.getSelectedViews(),function(e){return e.model}))},_showLoadingIndicator:function(e,t,n){this.debug("_showLoadingIndicator",this.indicator,e,t,n),t=void 0!==t?t:this.fxSpeed,this.indicator||(this.indicator=new c.default(this.$el),this.debug("\t created",this.indicator)),this.$el.is(":visible")?(this.$el.fadeOut(t),this.indicator.show(e,t,n)):this.indicator.show(0,n)},_hideLoadingIndicator:function(e,t){this.debug("_hideLoadingIndicator",this.indicator,e,t),e=void 0!==e?e:this.fxSpeed,this.indicator&&this.indicator.hide(e,t)},scrollPosition:function(){return this.$scrollContainer().scrollTop()},scrollTo:function(e,t){return t=t||0,this.$scrollContainer().animate({scrollTop:e},t),this},scrollToTop:function(e){return this.scrollTo(0,e)},scrollToItem:function(e,t){return this},scrollToId:function(e,t){return this.scrollToItem(this.viewFromModelId(e),t)},events:{"click .select-all":"selectAll","click .deselect-all":"deselectAll"},toString:function(){return"ListPanel("+this.collection+")"}});p.prototype.templates=function(){return{el:u.default.wrapTemplate(["<div>",'<div class="controls"></div>','<div class="list-items"></div>','<div class="empty-message infomessagesmall"></div>',"</div>"]),controls:u.default.wrapTemplate(['<div class="controls">','<div class="title">','<div class="name"><%- view.title %></div>',"</div>",'<div class="subtitle"><%- view.subtitle %></div>','<div class="actions"></div>','<div class="messages"></div>','<div class="search">','<div class="search-input"></div>',"</div>",'<div class="list-actions">','<div class="btn-group">','<button class="select-all btn btn-default"','data-mode="select">',(0,f.default)("All"),"</button>",'<button class="deselect-all btn btn-default"','data-mode="select">',(0,f.default)("None"),"</button>","</div>",'<div class="list-action-menu btn-group">',"</div>","</div>","</div>"])}}();var g=p.extend({modelCollectionKey:"contents",initialize:function(e){p.prototype.initialize.call(this,e),this.selecting=void 0!==e.selecting&&e.selecting,this.setModel(this.model,e)},setModel:function(e,t){if(t=t||{},this.debug(this+".setModel:",e,t),this.freeModel(),this.freeViews(),e){var n=this.model?this.model.get("id"):null;this.model=e,this.logger&&(this.model.logger=this.logger),this._setUpModelListeners(),this.stopListening(this.collection),this.collection=this.model[this.modelCollectionKey]||t.collection||this._createDefaultCollection(),this._setUpCollectionListeners(),n&&e.get("id")!==n&&this.trigger("new-model",this)}return this},freeModel:function(){return this.model&&this.stopListening(this.model),this},_setUpModelListeners:function(){return this.log(this+"._setUpModelListeners",this.model),this.listenTo(this.model,"error",function(){var e=Array.prototype.slice.call(arguments,0);e.unshift("error"),this.trigger.apply(this,e)},this),this.logger&&this.listenTo(this.model,"all",function(e){this.info(this+"(model)",e,arguments)}),this},_renderControls:function(e){this.debug(this+"(ModelListPanel)._renderControls");var t=this.model?this.model.toJSON():{},n=r(this.templates.controls(t,this));return e.find(".controls").replaceWith(n),n},toString:function(){return"ModelListPanel("+this.model+")"}});g.prototype.templates=function(){var e=u.default.wrapTemplate(['<div class="controls">','<div class="title">','<div class="name"><%- model.name %></div>',"</div>",'<div class="subtitle"><%- view.subtitle %></div>','<div class="actions"></div>','<div class="messages"></div>','<div class="search">','<div class="search-input"></div>',"</div>",'<div class="list-actions">','<div class="btn-group">','<button class="select-all btn btn-default"','data-mode="select">',(0,f.default)("All"),"</button>",'<button class="deselect-all btn btn-default"','data-mode="select">',(0,f.default)("None"),"</button>","</div>",'<div class="list-action-menu btn-group">',"</div>","</div>","</div>"]);return i.extend(i.clone(p.prototype.templates),{controls:e})}(),t.default={ListPanel:p,ModelListPanel:g}}).call(t,n(2),n(1),n(0))},function(e,t,n){"use strict";function i(e,t){function n(e){o(this).parent().children("input").val("").trigger("searchInput.clear").blur(),t.onclear()}function i(e,i){if(!i)return n();o(this).trigger("search.search",i),"function"==typeof t.onfirstsearch&&u?(u=!1,t.onfirstsearch(i)):t.onsearch(i)}function r(){return['<input type="text" name="',t.name,'" placeholder="',t.placeholder,'" ','class="search-query ',t.classes,'" ',"/>"].join("")}var l=27,c=13,d=o(e),u=!0,h={initialVal:"",name:"search",placeholder:"search",classes:"",onclear:function(){},onfirstsearch:null,onsearch:function(e){},minSearchLen:0,escWillClear:!0,oninit:function(){}};return"string"===a.default.type(t)?("toggle-loading"===t&&function(){d.find(".search-loading").toggle(),d.find(".search-clear").toggle()}(),d):("object"===a.default.type(t)&&(t=a.default.extend(!0,{},h,t)),d.addClass("search-input").prepend([function(){return o(r()).focus(function(e){o(this).select()}).keyup(function(e){if(e.preventDefault(),e.stopPropagation(),e.which===l&&t.escWillClear)n.call(this,e);else{var r=o(this).val();(e.which===c||t.minSearchLen&&r.length>=t.minSearchLen)&&i.call(this,e,r)}}).val(t.initialVal)}(),function(){return o(['<span class="search-clear fa fa-times-circle" ','title="',s("clear search (esc)"),'"></span>'].join("")).tooltip({placement:"bottom"}).click(function(e){n.call(this,e)})}(),function(){return o(['<span class="search-loading fa fa-spinner fa-spin" ','title="',s("loading..."),'"></span>'].join("")).hide().tooltip({placement:"bottom"})}()]))}var r=n(0),a=function(e){return e&&e.__esModule?e:{default:e}}(r),o=a.default,s=window._l||function(e){return e};a.default.fn.extend({searchInput:function(e){return this.each(function(){return i(this,e)})}})},function(e,t,n){"use strict";(function(e){function i(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var r=n(17),a=i(r),o=n(4),s=i(o),l=n(58),c=i(l),d=n(3),u=i(d),h=a.default.DatasetListItemView,f=h.extend({className:h.prototype.className+" history-content",initialize:function(e,t){h.prototype.initialize.call(this,e,t)},toString:function(){return"HDAListItemView("+(this.model?""+this.model:"(no model)")+")"}});f.prototype.templates=function(){var t=function(t){return'\n        <div class="title-bar clear" tabindex="0">\n            <span class="state-icon"></span>\n            <div class="title">\n                <span class="hid">'+t.hid+'</span>\n                <span class="name">'+e.escape(t.name)+"</span>\n            </div>\n            </br>\n            "+c.default.nametagTemplate(t)+"\n        </div>\n    "},n=e.extend({},h.prototype.templates.warnings,{hidden:s.default.wrapTemplate(["<% if( !dataset.visible ){ %>",'<div class="hidden-msg warningmessagesmall">',(0,u.default)("This dataset has been hidden"),"</div>","<% } %>"],"dataset")});return 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n={details:"all"};return t.data=e.extend(t.data||{},n),this.fetch(t)},_filterAndUpdate:function(e,t){var n=this,i=n.model.prototype.idAttribute,r=[t];return n.fetch({filters:e,remove:!1}).then(function(e){return e=e.reduce(function(e,t,r){var a=n.get(t[i]);return a?e.concat(a):e},[]),n.ajaxQueue("save",r,e)})},ajaxQueue:function(t,n,i){return i=i||this.models,new y.default.AjaxQueue(i.slice().reverse().map(function(i,r){var a=e.isString(t)?i[t]:t;return function(){return a.apply(i,n)}})).deferred},progressivelyFetchDetails:function(t){function n(i){i=i||0;var s=e.extend(e.clone(t),{view:"summary",keys:l,limit:o,offset:i,reset:0===i,remove:!1});e.defer(function(){a.fetch.call(a,s).fail(r.reject).done(function(e){r.notify(e,o,i),e.length!==o?(a.allFetched=!0,r.resolve(e,o,i)):n(i+o)})})}t=t||{};var r=i.Deferred(),a=this,o=t.limitPerCall||a.limitPerProgressiveFetch,s=c.default.HistoryDatasetAssociation.prototype.searchAttributes,l=s.join(",");return n(),r},isCopyable:function(t){var n=["HistoryDatasetAssociation","HistoryDatasetCollectionAssociation"];return e.isObject(t)&&t.id&&e.contains(n,t.model_class)},copy:function(t){var n,r,a;e.isString(t)?(n=t,a="hda",r="dataset"):(n=t.id,a={HistoryDatasetAssociation:"hda",LibraryDatasetDatasetAssociation:"ldda",HistoryDatasetCollectionAssociation:"hdca"}[t.model_class]||"hda",r="hdca"===a?"dataset_collection":"dataset");var o=this,s=i.ajax(this.url(),{method:"POST",contentType:"application/json",data:JSON.stringify({content:n,source:a,type:r})}).done(function(e){o.add([e],{parse:!0})}).fail(function(e,t,i){o.trigger("error",o,s,{},"Error copying contents",{type:r,id:n,source:a})});return s},createHDCA:function(e,t,n,i,r){return this.model({history_content_type:"dataset_collection",collection_type:t,history_id:this.historyId,name:n,hide_source_items:i||!1,element_identifiers:e}).save(r)},haveSearchDetails:function(){return this.allFetched&&this.all(function(t){return 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_.prototype._swapNewRender.call(this,e),this.model.has("state")&&this.$el.addClass("state-"+this.model.get("state")),this.$el},_renderPrimaryActions:function(){return[this._renderDisplayButton()]},_renderDisplayButton:function(){var e=this.model.get("state");if(e===d.default.NOT_VIEWABLE||e===d.default.DISCARDED||!this.model.get("accessible"))return null;var t={target:this.linkTarget,classes:"display-btn"};if(this.model.get("purged"))t.disabled=!0,t.title=(0,m.default)("Cannot display datasets removed from disk");else if(e===d.default.UPLOAD)t.disabled=!0,t.title=(0,m.default)("This dataset must finish uploading before it can be viewed");else if(e===d.default.NEW)t.disabled=!0,t.title=(0,m.default)("This dataset is not yet viewable");else{t.title=(0,m.default)("View data"),t.href=this.model.urls.display;var n=this;t.onclick=function(e){Galaxy.frame&&Galaxy.frame.active&&(Galaxy.frame.addDataset(n.model.get("id")),e.preventDefault())}}return t.faIcon="fa-eye",(0,h.default)(t)},_renderDetails:function(){if(this.model.get("state")===d.default.NOT_VIEWABLE)return a(this.templates.noAccess(this.model.toJSON(),this));var e=_.prototype._renderDetails.call(this);return e.find(".actions .left").empty().append(this._renderSecondaryActions()),e.find(".summary").html(this._renderSummary()).prepend(this._renderDetailMessages()),e.find(".display-applications").html(this._renderDisplayApplications()),this._setUpBehaviors(e),e},_renderSummary:function(){var e=this.model.toJSON(),t=this.templates.summaries[e.state];return(t=t||this.templates.summaries.unknown)(e,this)},_renderDetailMessages:function(){var t=this,n=a('<div class="detail-messages"></div>'),i=t.model.toJSON();return e.each(t.templates.detailMessages,function(e){n.append(a(e(i,t)))}),n},_renderDisplayApplications:function(){return this.model.isDeletedOrPurged()?"":[this.templates.displayApplications(this.model.get("display_apps"),this),this.templates.displayApplications(this.model.get("display_types"),this)].join("")},_renderSecondaryActions:function(){switch(this.debug("_renderSecondaryActions"),this.model.get("state")){case d.default.NOT_VIEWABLE:return[];case d.default.OK:case d.default.FAILED_METADATA:case d.default.ERROR:return[this._renderDownloadButton(),this._renderShowParamsButton()]}return[this._renderShowParamsButton()]},_renderShowParamsButton:function(){return(0,h.default)({title:(0,m.default)("View details"),classes:"params-btn",href:this.model.urls.show_params,target:this.linkTarget,faIcon:"fa-info-circle",onclick:function(e){Galaxy.frame&&Galaxy.frame.active&&(Galaxy.frame.add({title:(0,m.default)("Dataset details"),url:this.href}),e.preventDefault(),e.stopPropagation())}})},_renderDownloadButton:function(){return this.model.get("purged")||!this.model.hasData()?null:e.isEmpty(this.model.get("meta_files"))?a('\n                <a class="download-btn icon-btn" href="'+this.model.urls.download+'" title="'+(0,m.default)("Download")+'">\n                    <span class="fa fa-floppy-o"></span>\n                </a>'):this._renderMetaFileDownloadButton()},_renderMetaFileDownloadButton:function(){var t=this.model.urls;return a('\n                <div class="metafile-dropdown dropdown">\n                    <a class="download-btn icon-btn" href="'+t.download+'" data-toggle="dropdown" title="'+(0,m.default)("Download")+'">\n                        <span class="fa fa-floppy-o"></span>\n                    </a>\n                    <ul class="dropdown-menu" role="menu" aria-labelledby="dLabel">\n                        <li>\n                            <a href="'+t.download+'">\n                                '+(0,m.default)("Download dataset")+"\n                            </a>\n                        </li>\n                        "+e.map(this.model.get("meta_files"),function(e){return'<li>\n                                    <a href="'+(t.meta_download+e.file_type)+'">\n                                        '+(0,m.default)("Download")+" "+e.file_type+"\n                                    </a>\n                                </li>"})+"\n                    </ul>\n                </div>")},_renderNametags:function(){return e.template(["<% _.each(_.sortBy(_.uniq(tags), function(x) { return x }), function(tag){ %>",'<% if (tag.indexOf("name:") == 0){ %>','<span class="label label-info"><%- tag.slice(5) %></span>',"<% } %>","<% }); %>"].join(""))({tags:this.model.get("tags")})},events:e.extend(e.clone(_.prototype.events),{"click .display-btn":function(e){this.trigger("display",this,e)},"click .params-btn":function(e){this.trigger("params",this,e)},"click .download-btn":function(e){this.trigger("download",this,e)}}),toString:function(){return"DatasetListItemView("+(this.model?""+this.model:"(no model)")+")"}});v.prototype.templates=function(){var t=e.extend({},_.prototype.templates.warnings,{failed_metadata:p.default.wrapTemplate(['<% if( model.state === "failed_metadata" ){ %>','<div class="warningmessagesmall">',(0,m.default)("An error occurred setting the metadata for this dataset"),"</div>","<% } %>"]),error:p.default.wrapTemplate(["<% if( model.error ){ %>",'<div class="errormessagesmall">',(0,m.default)("There was an error getting the data for this dataset"),": <%- model.error %>","</div>","<% } %>"]),purged:p.default.wrapTemplate(["<% if( model.purged ){ %>",'<div class="purged-msg warningmessagesmall">',(0,m.default)("This dataset has been deleted and removed from disk"),"</div>","<% } %>"]),deleted:p.default.wrapTemplate(["<% if( model.deleted && !model.purged ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,m.default)("This dataset has been deleted"),"</div>","<% } %>"])}),n=p.default.wrapTemplate(['<div class="details">','<div class="summary"></div>','<div class="actions clear">','<div class="left"></div>','<div class="right"></div>',"</div>","<% if( !dataset.deleted && !dataset.purged ){ %>",'<div class="tags-display"></div>','<div class="annotation-display"></div>','<div class="display-applications"></div>',"<% if( dataset.peek ){ %>",'<pre class="dataset-peek"><%= dataset.peek %></pre>',"<% } %>","<% } %>","</div>"],"dataset"),i=p.default.wrapTemplate(['<div class="details">','<div class="summary">',(0,m.default)("You do not have permission to view this dataset"),"</div>","</div>"],"dataset"),r={};r[d.default.OK]=r[d.default.FAILED_METADATA]=p.default.wrapTemplate(["<% if( dataset.misc_blurb ){ %>",'<div class="blurb">','<span class="value"><%- dataset.misc_blurb %></span>',"</div>","<% } %>","<% if( dataset.file_ext ){ %>",'<div class="datatype">','<label class="prompt">',(0,m.default)("format"),"</label>",'<span class="value"><%- dataset.file_ext %></span>',"</div>","<% } %>","<% if( dataset.metadata_dbkey ){ %>",'<div class="dbkey">','<label class="prompt">',(0,m.default)("database"),"</label>",'<span class="value">',"<%- dataset.metadata_dbkey %>","</span>","</div>","<% } %>","<% if( dataset.misc_info ){ %>",'<div class="info">','<span class="value"><%- dataset.misc_info %></span>',"</div>","<% } %>"],"dataset"),r[d.default.NEW]=p.default.wrapTemplate(["<div>",(0,m.default)("This is a new dataset and not all of its data are available yet"),"</div>"],"dataset"),r[d.default.NOT_VIEWABLE]=p.default.wrapTemplate(["<div>",(0,m.default)("You do not have permission to view this dataset"),"</div>"],"dataset"),r[d.default.DISCARDED]=p.default.wrapTemplate(["<div>",(0,m.default)("The job creating this dataset was cancelled before completion"),"</div>"],"dataset"),r[d.default.QUEUED]=p.default.wrapTemplate(["<div>",(0,m.default)("This job is waiting to run"),"</div>"],"dataset"),r[d.default.RUNNING]=p.default.wrapTemplate(["<div>",(0,m.default)("This job is currently running"),"</div>"],"dataset"),r[d.default.UPLOAD]=p.default.wrapTemplate(["<div>",(0,m.default)("This dataset is currently uploading"),"</div>"],"dataset"),r[d.default.SETTING_METADATA]=p.default.wrapTemplate(["<div>",(0,m.default)("Metadata is being auto-detected"),"</div>"],"dataset"),r[d.default.PAUSED]=p.default.wrapTemplate(["<div>",(0,m.default)('This job is paused. Use the "Resume Paused Jobs" in the history menu to resume'),"</div>"],"dataset"),r[d.default.ERROR]=p.default.wrapTemplate(["<% if( !dataset.purged ){ %>","<div><%- dataset.misc_blurb %></div>","<% } %>",'<span class="help-text">',(0,m.default)("An error occurred with this dataset"),":</span>",'<div class="job-error-text"><%- dataset.misc_info %></div>'],"dataset"),r[d.default.EMPTY]=p.default.wrapTemplate(["<div>",(0,m.default)("No data"),": <i><%- dataset.misc_blurb %></i></div>"],"dataset"),r.unknown=p.default.wrapTemplate(['<div>Error: unknown dataset state: "<%- dataset.state %>"</div>'],"dataset");var a={resubmitted:p.default.wrapTemplate(["<% if( model.resubmitted ){ %>",'<div class="resubmitted-msg infomessagesmall">',(0,m.default)("The job creating this dataset has been resubmitted"),"</div>","<% } %>"])},o=p.default.wrapTemplate(["<% _.each( apps, function( app ){ %>",'<div class="display-application">','<span class="display-application-location"><%- app.label %></span> ','<span class="display-application-links">',"<% _.each( app.links, function( link ){ %>",'<a target="<%- link.target %>" href="<%- link.href %>">',"<% print( _l( link.text ) ); %>","</a> ","<% }); %>","</span>","</div>","<% }); %>"],"apps");return e.extend({},_.prototype.templates,{warnings:t,details:n,noAccess:i,summaries:r,detailMessages:a,displayApplications:o})}(),t.default={DatasetListItemView:v}}).call(t,n(1),n(0),n(2),n(0))},function(e,t,n){"use strict";(function(e){Object.defineProperty(t,"__esModule",{value:!0});var i=n(316),r=function(e){return e&&e.__esModule?e:{default:e}}(i),a=e.Model.extend({urlRoot:Galaxy.root+"api/libraries/",isVisible:function(e){var t=!0;return!e&&this.get("deleted")&&(t=!1),t}}),o=e.Collection.extend({urlRoot:Galaxy.root+"api/libraries",model:a,initialize:function(e){e=e||{}},search:function(e){if(""==e)return this;var t=e.toLowerCase();return this.filter(function(e){return-1!==e.get("name").toLowerCase().indexOf(t)})},getVisible:function(e,t){return t=t||[],new o(this.filter(function(t){return t.isVisible(e)}))},sortLibraries:function(e,t){this.comparator=r.default.generateLibraryComparator(e,t),this.sort()}}),s=e.Model.extend({}),l=s.extend({urlRoot:Galaxy.root+"api/libraries/datasets/"}),c=s.extend({urlRoot:Galaxy.root+"api/folders/"}),d=e.Collection.extend({model:s,sortFolder:function(e,t){this.comparator=r.default.generateFolderComparator(e,t),this.sort()}}),u=e.Model.extend({defaults:{folder:new d,urlRoot:Galaxy.root+"api/folders/",id:"unknown"},parse:function(e){this.get("folder").reset();for(var t=0;t<e.folder_contents.length;t++)if("folder"===e.folder_contents[t].type){var n=new c(e.folder_contents[t]);this.get("folder").add(n)}else if("file"===e.folder_contents[t].type){var i=new l(e.folder_contents[t]);this.get("folder").add(i)}else Galaxy.emit.error("Unknown folder item type encountered while parsing response.");return e}}),h=e.Model.extend({urlRoot:Galaxy.root+"api/histories/"}),f=e.Collection.extend({urlRoot:Galaxy.root+"api/histories/",initialize:function(e){this.id=e.id},url:function(){return this.urlRoot+this.id+"/contents"},model:h}),p=e.Model.extend({urlRoot:Galaxy.root+"api/histories/"}),g=e.Collection.extend({url:Galaxy.root+"api/histories",model:p}),m=e.Model.extend({urlRoot:Galaxy.root+"api/remote_files"});t.default={Library:a,Libraries:o,Item:l,Ldda:l,FolderAsModel:c,Folder:d,FolderContainer:u,HistoryItem:h,HistoryContents:f,GalaxyHistory:p,GalaxyHistories:g,Jstree:m}}).call(t,n(2))},,function(e,t,n){"use strict";(function(e){function i(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var r=n(29),a=i(r),o=n(51),s=i(o),l=n(3),c=(i(l),s.default.HistoryContentMixin),d=a.default.DatasetCollection,u=d.extend(c).extend({defaults:e.extend(e.clone(d.prototype.defaults),{history_content_type:"dataset_collection",model_class:"HistoryDatasetCollectionAssociation"}),save:function(e,t){return this.isNew()&&(t=t||{},t.url=this.urlRoot+this.get("history_id")+"/contents",e=e||{},e.type="dataset_collection"),d.prototype.save.call(this,e,t)},toString:function(){return"History"+d.prototype.toString.call(this)}});t.default={HistoryDatasetCollection:u}}).call(t,n(1))},function(e,t,n){"use strict";(function(e,i,r,a){function o(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=n(4),l=o(s),c=n(3),d=(o(c),e.View.extend(l.default.LoggableMixin).extend({_logNamespace:"list",initialize:function(e){this.expanded=e.expanded||!1,this.log("\t expanded:",this.expanded),this.fxSpeed=void 0!==e.fxSpeed?e.fxSpeed:this.fxSpeed},fxSpeed:"fast",render:function(e){var t=this._buildNewRender();return this._setUpBehaviors(t),this._queueNewRender(t,e),this},_buildNewRender:function(){var e=i(this.templates.el(this.model.toJSON(),this));return this.expanded&&this.$details(e).replaceWith(this._renderDetails().show()),e},_queueNewRender:function(e,t){t=void 0===t?this.fxSpeed:t;var n=this;0===t?(n._swapNewRender(e),n.trigger("rendered",n)):i(n).queue("fx",[function(e){n.$el.fadeOut(t,e)},function(t){n._swapNewRender(e),t()},function(e){n.$el.fadeIn(t,e)},function(e){n.trigger("rendered",n),e()}])},_swapNewRender:function(e){return this.$el.empty().attr("class",r.isFunction(this.className)?this.className():this.className).append(e.children())},_setUpBehaviors:function(e){e=e||this.$el,e.find("[title]").tooltip({placement:"bottom"})},$details:function(e){return e=e||this.$el,e.find("> .details")},_renderDetails:function(){var e=i(this.templates.details(this.model.toJSON(),this));return this._setUpBehaviors(e),e},toggleExpanded:function(e){return e=void 0===e?!this.expanded:e,e?this.expand():this.collapse(),this},expand:function(){var e=this;return e._fetchModelDetails().always(function(){e._expand()})},_fetchModelDetails:function(){return this.model.hasDetails()?a.when():this.model.fetch()},_expand:function(){var e=this,t=e._renderDetails();e.$details().replaceWith(t),e.expanded=!0,e.$details().slideDown(e.fxSpeed,function(){e.trigger("expanded",e)})},collapse:function(){this.debug(this+"(ExpandableView).collapse");var e=this;e.expanded=!1,this.$details().slideUp(e.fxSpeed,function(){e.trigger("collapsed",e)})}})),u=d.extend(l.default.mixin(l.default.SelectableViewMixin,l.default.DraggableViewMixin,{tagName:"div",className:"list-item",initialize:function(e){d.prototype.initialize.call(this,e),l.default.SelectableViewMixin.initialize.call(this,e),l.default.DraggableViewMixin.initialize.call(this,e),this._setUpListeners()},_setUpListeners:function(){return this.on("selectable",function(e){e?this.$(".primary-actions").hide():this.$(".primary-actions").show()},this),this},_buildNewRender:function(){var e=d.prototype._buildNewRender.call(this);return e.children(".warnings").replaceWith(this._renderWarnings()),e.children(".title-bar").replaceWith(this._renderTitleBar()),e.children(".primary-actions").append(this._renderPrimaryActions()),e.find("> .title-bar .subtitle").replaceWith(this._renderSubtitle()),e},_swapNewRender:function(e){return d.prototype._swapNewRender.call(this,e),this.selectable&&this.showSelector(0),this.draggable&&this.draggableOn(),this.$el},_renderWarnings:function(){var e=this,t=i('<div class="warnings"></div>'),n=e.model.toJSON();return r.each(e.templates.warnings,function(r){t.append(i(r(n,e)))}),t},_renderTitleBar:function(){return i(this.templates.titleBar(this.model.toJSON(),this))},_renderPrimaryActions:function(){return[]},_renderSubtitle:function(){return i(this.templates.subtitle(this.model.toJSON(),this))},events:{"click .title-bar":"_clickTitleBar","keydown .title-bar":"_keyDownTitleBar","click .selector":"toggleSelect"},_clickTitleBar:function(e){e.stopPropagation(),e.altKey?(this.toggleSelect(e),this.selectable||this.showSelector()):this.toggleExpanded()},_keyDownTitleBar:function(e){return!e||"keydown"!==e.type||32!==e.keyCode&&13!==e.keyCode||(this.toggleExpanded(),e.stopPropagation(),!1)},toString:function(){return"ListItemView("+(this.model?""+this.model:"(no model)")+")"}}));u.prototype.templates=function(){return{el:l.default.wrapTemplate(['<div class="list-element">','<div class="warnings"></div>','<div class="selector">','<span class="fa fa-2x fa-square-o"></span>',"</div>",'<div class="primary-actions"></div>','<div class="title-bar"></div>','<div class="details"></div>',"</div>"]),warnings:{},titleBar:l.default.wrapTemplate(['<div class="title-bar clear" tabindex="0">','<span class="state-icon"></span>','<div class="title">','<span class="name"><%- element.name %></span>',"</div>",'<div class="subtitle"></div>',"</div>"],"element"),subtitle:l.default.wrapTemplate(['<div class="subtitle"></div>']),details:l.default.wrapTemplate(['<div class="details"></div>'])}}();var h=u.extend({foldoutStyle:"foldout",foldoutPanelClass:null,initialize:function(e){"drilldown"===this.foldoutStyle&&(this.expanded=!1),this.foldoutStyle=e.foldoutStyle||this.foldoutStyle,this.foldoutPanelClass=e.foldoutPanelClass||this.foldoutPanelClass,u.prototype.initialize.call(this,e),this.foldout=this._createFoldoutPanel()},_renderDetails:function(){if("drilldown"===this.foldoutStyle)return i();var e=u.prototype._renderDetails.call(this);return this._attachFoldout(this.foldout,e)},_createFoldoutPanel:function(){var e=this.model,t=this._getFoldoutPanelClass(e),n=this._getFoldoutPanelOptions(e);return new t(r.extend(n,{model:e}))},_getFoldoutPanelClass:function(){return this.foldoutPanelClass},_getFoldoutPanelOptions:function(){return{foldoutStyle:this.foldoutStyle,fxSpeed:this.fxSpeed}},_attachFoldout:function(e,t){return t=t||this.$("> .details"),this.foldout=e.render(0),e.$("> .controls").hide(),t.append(e.$el)},expand:function(){var e=this;return e._fetchModelDetails().always(function(){"foldout"===e.foldoutStyle?e._expand():"drilldown"===e.foldoutStyle&&e._expandByDrilldown()})},_expandByDrilldown:function(){var e=this;e.listenTo(e.foldout,"close",function(){e.trigger("collapsed:drilldown",e,e.foldout)}),e.trigger("expanded:drilldown",e,e.foldout)}});h.prototype.templates=function(){var e=l.default.wrapTemplate(['<div class="details">',"</div>"],"collection");return r.extend({},u.prototype.templates,{details:e})}(),t.default={ExpandableView:d,ListItemView:u,FoldoutListItemView:h}}).call(t,n(2),n(0),n(1),n(0))},function(e,t,n){"use strict";(function(e,i){function r(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=n(4),o=r(a),s=n(3),l=r(s),c=e.View.extend(o.default.LoggableMixin).extend(o.default.HiddenUntilActivatedViewMixin).extend({tagName:"div",className:"tags-display",select_width:"100%",events:{},initialize:function(e){this.show_editor=!1,!1===e.usePrompt?this.label="":this.label='<label class="prompt">'+(0,l.default)("Tags")+"</label>",this.workflow_mode=e.workflow_mode||!1,this.workflow_mode&&(this.events.click="showEditor",this.events.keydown="keydownHandler"),this.hiddenUntilActivated(e.$activator,e)},render:function(){var e=this;return this.workflow_mode?this.$el.html(this._workflowTemplate()):this.$el.html(this._defaultTemplate()),this.$input().select2({placeholder:"Add tags",width:this.workflow_mode?this.width:this.select_width,tags:function(){return e._getTagsUsed()}}),this._setUpBehaviors(),this},_hashToName:function(e){return e.startsWith("#")?"name:"+e.slice(1):e},_nameToHash:function(e){return e.startsWith("name:")&&(e="#"+e.slice(5)),e},_defaultTemplate:function(){return[this.label,this._renderEditor()].join("")},_workflowTemplate:function(){return[this.show_editor?this._renderEditor():this._renderTags()].join(" ")},keydownHandler:function(e){switch(e.which){case 27:this.hideEditor()}},showEditor:function(){this.show_editor=!0,this.render()},hideEditor:function(){this.show_editor=!1,this.render()},_renderEditor:function(){return'<input class="tags-input" value="'+this.tagsToCSV()+'"/>'},_renderTags:function(){var e=this.model.get("tags"),t=Galaxy.root+"static/images/fugue/tag--plus.png",n=[];return i.each(e,function(e){e=0==e.indexOf("name:")?e.slice(5):e;var t='<span class="label label-info">'+e+"</span>";n.push(t)}),0===n.length&&n.push("<img src="+t+' class="add-tag-button" title="Add tags"/>'),n.join(" ")},tagsToCSV:function(){var e=this,t=this.model.get("tags");return!i.isArray(t)||i.isEmpty(t)?"":t.map(function(t){return i.escape(e._nameToHash(t))}).sort().join(",")},$input:function(){return this.$el.find("input.tags-input")},_getTagsUsed:function(){var e=this;return i.map(Galaxy.user.get("tags_used"),e._nameToHash)},_setUpBehaviors:function(){var e=this;this.$input().on("change",function(t){t.val=i.map(t.val,e._hashToName),e.model.save({tags:t.val}),t.added&&e._addNewTagToTagsUsed(""+t.added.text)})},_addNewTagToTagsUsed:function(e){var t=Galaxy.user.get("tags_used");i.contains(t,e)||(t.push(e),t.sort(),Galaxy.user.set("tags_used",t))},remove:function(){this.$input.off(),this.stopListening(this.model),e.View.prototype.remove.call(this)},toString:function(){return["TagsEditor(",""+this.model,")"].join("")}});t.default={TagsEditor:c}}).call(t,n(2),n(1))},,,,,,function(e,t,n){"use strict";(function(e,i,r,a){function o(e){return e&&e.__esModule?e:{default:e}}function s(e,t){var n=e.toJSON();return M(n,{defaultHideSourceItems:t,creationFn:function(t,n,i){return t=t.map(function(e){return{id:e.id,name:e.name,src:"dataset"===e.history_content_type?"hda":"hdca"}}),e.createHDCA(t,"list",n,i)}})}Object.defineProperty(t,"__esModule",{value:!0});var l=n(20),c=o(l),d=n(8),u=o(d),h=n(4),f=o(h),p=n(52),g=o(p),m=n(9),_=o(m),v=n(53),y=(o(v),n(3)),b=o(y);n(54);var w=e.View.extend(f.default.LoggableMixin).extend({_logNamespace:"collections",tagName:"li",className:"collection-element",initialize:function(e){this.element=e.element||{},this.selected=e.selected||!1},render:function(){this.dragStartHandler=i.bind(this._dragstart,this),this.dragEndHandler=i.bind(this._dragend,this);var e=this.$el.attr("data-element-id",this.element.id).attr("draggable",!0).html(this.template({element:this.element})).get(0);return e.addEventListener("dragstart",this.dragStartHandler,!1),e.addEventListener("dragend",this.dragEndHandler,!1),this.selected&&this.$el.addClass("selected"),this},template:i.template(['<a class="name" title="',(0,b.default)("Click to rename"),'" href="javascript:void(0)">',"<%- element.name %>","</a>",'<button class="discard btn btn-sm" title="',(0,b.default)("Remove this dataset from the list"),'">',(0,b.default)("Discard"),"</button>"].join("")),select:function(e){this.$el.toggleClass("selected",e),this.trigger("select",{source:this,selected:this.$el.hasClass("selected")})},discard:function(){var e=this,t=this.$el.parent().width();this.$el.animate({"margin-right":t},"fast",function(){e.trigger("discard",{source:e}),e.destroy()})},destroy:function(){this.off(),this.$el.remove()},events:{click:"_click","click .name":"_clickName","click .discard":"_clickDiscard",dragover:"_sendToParent",drop:"_sendToParent"},_click:function(e){e.stopPropagation(),this.select(e)},_clickName:function(e){e.stopPropagation(),e.preventDefault();var t=([(0,b.default)("Enter a new name for the element"),":\n(",(0,b.default)("Note that changing the name here will not rename the dataset"),")"].join(""),prompt((0,b.default)("Enter a new name for the element")+":",this.element.name));t&&(this.element.name=t,this.render())},_clickDiscard:function(e){e.stopPropagation(),this.discard()},_dragstart:function(e){e.originalEvent&&(e=e.originalEvent),e.dataTransfer.effectAllowed="move",e.dataTransfer.setData("text/plain",JSON.stringify(this.element)),this.$el.addClass("dragging"),this.$el.parent().trigger("collection-element.dragstart",[this])},_dragend:function(e){this.$el.removeClass("dragging"),this.$el.parent().trigger("collection-element.dragend",[this])},_sendToParent:function(e){this.$el.parent().trigger(e)},toString:function(){return"DatasetCollectionElementView()"}}),x=e.View.extend(f.default.LoggableMixin).extend(g.default.CollectionCreatorMixin).extend({_logNamespace:"collections",elementViewClass:w,collectionClass:c.default.HistoryDatasetCollection,className:"list-collection-creator collection-creator flex-row-container",minElements:1,defaultAttributes:{creationFn:function(){throw new TypeError("no creation fn for creator")},oncreate:function(){},oncancel:function(){},autoscrollDist:24,highlightClr:"rgba( 64, 255, 255, 1.0 )"},footerSettings:{".hide-originals":"hideOriginals"},initialize:function(e){this.metric("ListCollectionCreator.initialize",e);var t=this;i.each(this.defaultAttributes,function(n,i){n=e[i]||n,t[i]=n}),t.initialElements=e.elements||[],this._setUpCommonSettings(e),this._instanceSetUp(),this._elementsSetUp(),this._setUpBehaviors()},_instanceSetUp:function(){this.selectedIds={},this.$dragging=null,this.blocking=!1},_elementsSetUp:function(){this.invalidElements=[],this.workingElements=[],this.elementViews=[],this.workingElements=this.initialElements.slice(0),this._ensureElementIds(),this._validateElements(),this._mangleDuplicateNames(),this._sortElements()},_ensureElementIds:function(){return this.workingElements.forEach(function(e){e.hasOwnProperty("id")||(e.id=i.uniqueId())}),this.workingElements},_validateElements:function(){var e=this;return e.invalidElements=[],this.workingElements=this.workingElements.filter(function(t){var n=e._isElementInvalid(t);return n&&e.invalidElements.push({element:t,text:n}),!n}),this.workingElements},_isElementInvalid:function(e){return"dataset_collection"===e.history_content_type?(0,b.default)("is a collection, this is not allowed"):e.state===u.default.OK||i.contains(u.default.NOT_READY_STATES,e.state)?e.deleted||e.purged?(0,b.default)("has been deleted or purged"):null:(0,b.default)("has errored, is paused, or is not accessible")},_mangleDuplicateNames:function(){var e=1,t={};this.workingElements.forEach(function(n){for(var i=n.name;t.hasOwnProperty(i);)if(i=n.name+" ("+e+")",(e+=1)>=900)throw new Error("Safety hit in while loop - thats impressive");n.name=i,t[n.name]=!0})},_sortElements:function(e){},render:function(e,t){return this.workingElements.length<this.minElements?this._renderInvalid(e,t):(this.$el.empty().html(this.templates.main()),this._renderHeader(e),this._renderMiddle(e),this._renderFooter(e),this._addPluginComponents(),this.$(".collection-name").focus(),this.trigger("rendered",this),this)},_renderInvalid:function(e,t){return this.$el.empty().html(this.templates.invalidInitial({problems:this.invalidElements,elements:this.workingElements})),"function"==typeof this.oncancel&&this.$(".cancel-create.btn").show(),this.trigger("rendered",this),this},_renderHeader:function(e,t){var n=this.$(".header").empty().html(this.templates.header()).find(".help-content").prepend(r(this.templates.helpContent()));return this.invalidElements.length&&this._invalidElementsAlert(),n},_renderMiddle:function(e,t){var n=this.$(".middle").empty().html(this.templates.middle());return this._renderList(e),n},_addPluginComponents:function(){this.$(".help-content 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";return t+='<a class="cancel-create" href="javascript:void(0);">'+(0,b.default)("Cancel")+"</a> ",t+=(0,b.default)("or"),t+=' <a class="reset" href="javascript:void(0);">'+(0,b.default)("start over")+"</a>.",void this._showAlert(t)}var n=this,i=this.workingElements.map(function(e){return n._elementToJSON(e)});return n.blocking=!0,n.creationFn(i,e,n.hideOriginals).always(function(){n.blocking=!1}).fail(function(e,t,i){n.trigger("error",{xhr:e,status:t,message:(0,b.default)("An error occurred while creating this collection")})}).done(function(e,t,i){n.trigger("collection:created",e,t,i),n.metric("collection:created",e),"function"==typeof n.oncreate&&n.oncreate.call(this,e,t,i)})},_setUpBehaviors:function(){return this.on("error",this._errorHandler),this.once("rendered",function(){this.trigger("rendered:initial",this)}),this.on("elements:select",function(e){this._renderClearSelected()}),this.on("elements:discard",function(e){var t=e.source.element;this.removeElementView(e.source),this.workingElements=i.without(this.workingElements,t),this.workingElements.length||this._renderNoElementsLeft()}),this},_errorHandler:function(e){this.error(e);var t=this,n=e.message||(0,b.default)("An error occurred");if(e.xhr){var i=e.xhr,r=e.message;0===i.readyState&&0===i.status?n+=": "+(0,b.default)("Galaxy could not be reached and may be updating.")+(0,b.default)(" Try again in a few minutes."):i.responseJSON?n+=":<br /><pre>"+JSON.stringify(i.responseJSON)+"</pre>":n+=": "+r}t._showAlert(n,"alert-danger")},events:{"click .more-help":"_clickMoreHelp","click .less-help":"_clickLessHelp","click .main-help":"_toggleHelp","click .header .alert button":"_hideAlert","click .reset":"reset","click .clear-selected":"clearSelectedElements","click .collection-elements":"clearSelectedElements","dragover .collection-elements":"_dragoverElements","drop .collection-elements":"_dropElements","collection-element.dragstart .collection-elements":"_elementDragstart","collection-element.dragend   .collection-elements":"_elementDragend","change .collection-name":"_changeName","keydown .collection-name":"_nameCheckForEnter","change .hide-originals":"_changeHideOriginals","click .cancel-create":"_cancelCreate","click .create-collection":"_clickCreate"},reset:function(){this._instanceSetUp(),this._elementsSetUp(),this.render()},clearSelectedElements:function(e){this.$(".collection-elements .collection-element").removeClass("selected"),this.$(".collection-elements-controls > .clear-selected").hide()},_dragoverElements:function(e){e.preventDefault();var t=this.$list();this._checkForAutoscroll(t,e.originalEvent.clientY);var n=this._getNearestElement(e.originalEvent.clientY);this.$(".element-drop-placeholder").remove();var i=r('<div class="element-drop-placeholder"></div>');n.length?n.before(i):t.append(i)},_checkForAutoscroll:function(e,t){var n=e.offset(),i=e.scrollTop(),r=t-n.top,a=n.top+e.outerHeight()-t;r>=0&&r<this.autoscrollDist?e.scrollTop(i-2):a>=0&&a<this.autoscrollDist&&e.scrollTop(i+2)},_getNearestElement:function(e){for(var t=this.$(".collection-elements li.collection-element").toArray(),n=0;n<t.length;n++){var i=r(t[n]),a=i.offset().top,o=Math.floor(i.outerHeight()/2)+4;if(a+o>e&&a-o<e)return i}return r()},_dropElements:function(e){e.originalEvent&&(e=e.originalEvent),e.preventDefault(),e.dataTransfer.dropEffect="move";var t=this._getNearestElement(e.clientY);return t.length?this.$dragging.insertBefore(t):this.$dragging.insertAfter(this.$(".collection-elements .collection-element").last()),this._syncOrderToDom(),!1},_syncOrderToDom:function(){var e=this,t=[];this.$(".collection-elements .collection-element").each(function(){var n=r(this).attr("data-element-id"),a=i.findWhere(e.workingElements,{id:n});a?t.push(a):console.error("missing element: ",n)}),this.workingElements=t,this._renderList()},_elementDragstart:function(e,t){t.select(!0),this.$dragging=this.$(".collection-elements .collection-element.selected")},_elementDragend:function(e,t){r(".element-drop-placeholder").remove(),this.$dragging=null},templates:i.extend({},g.default.CollectionCreatorMixin._creatorTemplates,{header:i.template(['<div class="main-help well clear">','<a class="more-help" href="javascript:void(0);">',(0,b.default)("More help"),"</a>",'<div class="help-content">','<a class="less-help" href="javascript:void(0);">',(0,b.default)("Less"),"</a>","</div>","</div>",'<div class="alert alert-dismissable">','<button type="button" class="close" data-dismiss="alert" ','title="',(0,b.default)("Close and show more help"),'" aria-hidden="true">&times;</button>','<span class="alert-message"></span>',"</div>"].join("")),middle:i.template(['<div class="collection-elements-controls">','<a class="reset" href="javascript:void(0);" ','title="',(0,b.default)("Undo all 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class="create-other btn-group dropup">','<button class="btn btn-default dropdown-toggle" data-toggle="dropdown">',(0,b.default)("Create a different kind of collection"),' <span class="caret"></span>',"</button>",'<ul class="dropdown-menu" role="menu">','<li><a href="#">',(0,b.default)("Create a <i>single</i> pair"),"</a></li>",'<li><a href="#">',(0,b.default)("Create a list of <i>unpaired</i> datasets"),"</a></li>","</ul>","</div>","</div>",'<div class="main-options pull-right">','<button class="create-collection btn btn-primary">',(0,b.default)("Create list"),"</button>","</div>","</div>"].join("")),helpContent:i.template(["<p>",(0,b.default)(["Collections of datasets are permanent, ordered lists of datasets that can be passed to tools and ","workflows in order to have analyses done on each member of the entire group. This interface allows ","you to create a collection and re-order the final collection."].join("")),"</p>","<ul>","<li>",(0,b.default)(["Rename elements in the list by clicking on ",'<i data-target=".collection-element .name">the existing name</i>.'].join("")),"</li>","<li>",(0,b.default)(["Discard elements from the final created list by clicking on the ",'<i data-target=".collection-element .discard">"Discard"</i> button.'].join("")),"</li>","<li>",(0,b.default)(["Reorder the list by clicking and dragging elements. Select multiple elements by clicking on ",'<i data-target=".collection-element">them</i> and you can then move those selected by dragging the ',"entire group. Deselect them by clicking them again or by clicking the ",'the <i data-target=".clear-selected">"Clear selected"</i> link.'].join("")),"</li>","<li>",(0,b.default)(['Click the <i data-target=".reset">"Start over"</i> link to begin again as if you had just opened ',"the interface."].join("")),"</li>","<li>",(0,b.default)(['Click the <i data-target=".cancel-create">"Cancel"</i> button to exit the interface.'].join("")),"</li>","</ul><br />","<p>",(0,b.default)(['Once your collection is complete, enter a <i data-target=".collection-name">name</i> and ','click <i data-target=".create-collection">"Create list"</i>.'].join("")),"</p>"].join("")),invalidElements:i.template([(0,b.default)("The following selections could not be included due to problems:"),"<ul><% _.each( problems, function( problem ){ %>","<li><b><%- problem.element.name %></b>: <%- problem.text %></li>","<% }); %></ul>"].join("")),noElementsLeft:i.template(['<li class="no-elements-left-message">',(0,b.default)("No elements left! "),(0,b.default)("Would you like to "),'<a class="reset" href="javascript:void(0)">',(0,b.default)("start over"),"</a>?","</li>"].join("")),invalidInitial:i.template(['<div class="header flex-row no-flex">','<div class="alert alert-warning" style="display: block">','<span class="alert-message">',"<% if( _.size( problems ) ){ %>",(0,b.default)("The following selections could not be included due to problems"),":","<ul><% _.each( problems, function( problem ){ %>","<li><b><%- problem.element.name %></b>: <%- problem.text %></li>","<% }); %></ul>","<% } else if( _.size( elements ) < 1 ){ %>",(0,b.default)("No datasets were selected"),".","<% } %>","<br />",(0,b.default)("At least one element is needed for the collection"),". ",(0,b.default)("You may need to "),'<a class="cancel-create" href="javascript:void(0)">',(0,b.default)("cancel"),"</a> ",(0,b.default)("and reselect new elements"),".","</span>","</div>","</div>",'<div class="footer flex-row no-flex">','<div class="actions clear vertically-spaced">','<div class="other-options pull-left">','<button class="cancel-create btn" tabindex="-1">',(0,b.default)("Cancel"),"</button>","</div>","</div>","</div>"].join(""))}),toString:function(){return"ListCollectionCreator"}}),k=function(e,t,n){var r,o=a.Deferred(),s=Galaxy.modal||new _.default.View;return t=i.defaults(t||{},{elements:e,oncancel:function(){s.hide(),o.reject("cancelled")},oncreate:function(e,t){s.hide(),o.resolve(t)}}),r=new n(t),s.show({title:t.title||(0,b.default)("Create a collection"),body:r.$el,width:"80%",height:"100%",closing_events:!0}),r.render(),window._collectionCreator=r,o},M=function(e,t){return t=t||{},t.title=(0,b.default)("Create a collection from a list of datasets"),k(e,t,x)};t.default={DatasetCollectionElementView:w,ListCollectionCreator:x,collectionCreatorModal:k,listCollectionCreatorModal:M,createListCollection:s}}).call(t,n(2),n(1),n(0),n(0))},function(e,t,n){"use strict";(function(e,i,r){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=n(50),s=a(o),l=n(4),c=a(l),d=n(3),u=(a(d),{defaults:{model_class:"DatasetCollectionElement",element_identifier:null,element_index:null,element_type:null},_mergeObject:function(t){return e.extend(t,t.object,{element_id:t.id}),delete t.object,t},constructor:function(e,t){e=this._mergeObject(e),this.idAttribute="element_id",i.Model.apply(this,arguments)},parse:function(e,t){var n=e;return n=this._mergeObject(n)}}),h=i.Model.extend(c.default.LoggableMixin).extend(u).extend({_logNamespace:"collections"}),f=i.Collection.extend(c.default.LoggableMixin).extend({_logNamespace:"collections",model:h,toString:function(){return["DatasetCollectionElementCollection(",this.length,")"].join("")}}),p=s.default.DatasetAssociation.extend(c.default.mixin(u,{url:function(){return this.has("history_id")?Galaxy.root+"api/histories/"+this.get("history_id")+"/contents/"+this.get("id"):(console.warn("no endpoint for non-hdas within a collection yet"),Galaxy.root+"api/datasets")},defaults:e.extend({},s.default.DatasetAssociation.prototype.defaults,u.defaults),_downloadQueryParameters:function(){var e=this.get("file_ext"),t=this.get("element_identifier");return"?to_ext="+e+"&hdca_id="+this.get("parent_hdca_id")+"&element_identifier="+t},constructor:function(e,t){this.debug("\t DatasetDCE.constructor:",e,t),u.constructor.call(this,e,t)},hasDetails:function(){return this.elements&&this.elements.length},toString:function(){this.get("element_identifier");return"DatasetDCE({objStr})"}})),g=f.extend({model:p,toString:function(){return["DatasetDCECollection(",this.length,")"].join("")}}),m=i.Model.extend(c.default.LoggableMixin).extend(c.default.SearchableModelMixin).extend({_logNamespace:"collections",defaults:{collection_type:null,deleted:!1},collectionClass:function(){return this.attributes.collection_type.indexOf(":")>0?v:g},initialize:function(e,t){this.debug(this+"(DatasetCollection).initialize:",e,t,this),this.elements=this._createElementsModel(),this.on("change:elements",function(){this.log("change:elements"),this.elements=this._createElementsModel()})},_createElementsModel:function(){var t=this.collectionClass();this.debug(this+"._createElementsModel",t,this.get("elements"),this.elements);var n=this.get("elements")||[];this.unset("elements",{silent:!0});var i=this;return e.each(n,function(t,n){e.extend(t,{parent_hdca_id:i.get("id")})}),this.elements=new t(n),this.elements},toJSON:function(){var e=i.Model.prototype.toJSON.call(this);return this.elements&&(e.elements=this.elements.toJSON()),e},inReadyState:function(){var e=this.get("populated");return this.isDeletedOrPurged()||e},hasDetails:function(){return 0!==this.elements.length},getVisibleContents:function(e){return this.elements},parse:function(e,t){var n=i.Model.prototype.parse.call(this,e,t);return n.create_time&&(n.create_time=new Date(n.create_time)),n.update_time&&(n.update_time=new Date(n.update_time)),n},delete:function(e){return this.get("deleted")?r.when():this.save({deleted:!0},e)},undelete:function(e){return!this.get("deleted")||this.get("purged")?r.when():this.save({deleted:!1},e)},isDeletedOrPurged:function(){return this.get("deleted")||this.get("purged")},searchAttributes:["name","tags"],toString:function(){return"DatasetCollection("+[this.get("id"),this.get("name")||this.get("element_identifier")].join(",")+")"}}),_=m.extend(c.default.mixin(u,{constructor:function(e,t){this.debug("\t NestedDCDCE.constructor:",e,t),u.constructor.call(this,e,t)},toString:function(){return["NestedDCDCE(",this.object?""+this.object:this.get("element_identifier"),")"].join("")}})),v=f.extend({model:_,toString:function(){return["NestedDCDCECollection(",this.length,")"].join("")}});t.default={DatasetCollection:m}}).call(t,n(1),n(2),n(0))},function(e,t,n){"use strict";(function(e,i,r,a){function o(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var 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this.contents?this.listenTo(this.contents,{error:function(){this.trigger.apply(this,i.makeArray(arguments))}}):this},contentsShown:function(){var e=this.get("contents_active"),t=e.active||0;return t+=this.contents.includeDeleted?e.deleted:0,t+=this.contents.includeHidden?e.hidden:0},nice_size:function(){var e=this.get("size");return e?f.default.bytesToString(e,!0,2):(0,_.default)("(empty)")},toJSON:function(){return r.extend(e.Model.prototype.toJSON.call(this),{nice_size:this.nice_size()})},get:function(t){return"nice_size"===t?this.nice_size():e.Model.prototype.get.apply(this,arguments)},ownedByCurrUser:function(){return!(!Galaxy||!Galaxy.user)&&(!Galaxy.user.isAnonymous()&&Galaxy.user.id===this.get("user_id"))},numOfUnfinishedJobs:function(){var e=this.get("non_ready_jobs");return e?e.length:0},numOfUnfinishedShownContents:function(){return this.contents.runningAndActive().length||0},_fetchContentRelatedAttributes:function(){var e=["size","non_ready_jobs","contents_active","hid_counter"];return this.fetch({data:a.param({keys:e.join(",")})})},refresh:function(e){var t=this;e=e||{};var n=this.lastUpdateTime;return this.contents.allFetched=!1,(0!==this.contents.currentPage?function(){return t.contents.fetchPage(t.contents.currentPage)}:function(){return t.contents.fetchUpdated(n)})().done(function(n,i,r){var a;try{a=new Date(r.getResponseHeader("Date"))}catch(e){}t.lastUpdateTime=a||new Date,t.checkForUpdates(e)})},checkForUpdates:function(e){var t=this;e=e||{};var n=this.UPDATE_DELAY;if(this.id){var i=function(){t.clearUpdateTimeout(),t.updateTimeoutId=setTimeout(function(){t.refresh(e)},n)};this.numOfUnfinishedShownContents()>0?i():this._fetchContentRelatedAttributes().done(function(e){t.numOfUnfinishedJobs()>0?i():t.trigger("ready")})}},clearUpdateTimeout:function(){this.updateTimeoutId&&(clearTimeout(this.updateTimeoutId),this.updateTimeoutId=null)},stopPolling:function(){this.clearUpdateTimeout(),this.contents&&this.contents.stopPolling()},parse:function(t,n){var i=e.Model.prototype.parse.call(this,t,n);return i.create_time&&(i.create_time=new Date(i.create_time)),i.update_time&&(i.update_time=new Date(i.update_time)),i},fetchWithContents:function(e,t){e=e||{};var n=this;return e.view="dev-detailed",this.fetch(e).then(function(e){return n.contents.history=n,n.contents.setHistoryId(e.id),n.fetchContents(t)})},fetchContents:function(e){e=e||{};var t=this;return t.lastUpdateTime=new Date,t.contents.fetchCurrentPage(e)},_delete:function(e){return this.get("deleted")?i.when():this.save({deleted:!0},e)},purge:function(e){return this.get("purged")?i.when():this.save({deleted:!0,purged:!0},e)},undelete:function(e){return this.get("deleted")?this.save({deleted:!1},e):i.when()},copy:function(e,t,n){if(e=void 0===e||e,!this.id)throw new Error("You must set the history ID before copying it.");var r={history_id:this.id};e&&(r.current=!0),t&&(r.name=t),n||(r.all_datasets=!1),r.view="dev-detailed";var a=this,o=i.post(this.urlRoot,r);return e?o.then(function(e){return new v(e).setAsCurrent().done(function(){a.trigger("copied",a,e)})}):o.done(function(e){a.trigger("copied",a,e)})},setAsCurrent:function(){var e=this,t=i.getJSON(Galaxy.root+"history/set_as_current?id="+this.id);return 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t=e.silent,n=this.remove(this.get(this.currentHistoryId));return y.prototype.sort.call(this,r.defaults({silent:!0},e)),this.unshift(n,{silent:!0}),t||this.trigger("sort",this,e),this},create:function(e,t,n,r){var a=this;return i.getJSON(Galaxy.root+"history/create_new_current").done(function(e){a.setCurrent(new v(e,[],n||{}))})},setCurrent:function(e,t){return t=t||{},this.unshift(e,t),this.currentHistoryId=e.get("id"),t.silent||this.trigger("new-current",e,this),this},toString:function(){return"HistoryCollection("+this.length+",current:"+this.currentHistoryId+")"}});t.default={History:v,HistoryCollection:b}}).call(t,n(2),n(0),n(1),n(0))},function(e,t,n){"use strict";(function(e){Object.defineProperty(t,"__esModule",{value:!0});var i=n(4),r=function(e){return e&&e.__esModule?e:{default:e}}(i),a=r.default.SessionStorageModel.extend({defaults:{expandedIds:{},show_deleted:!1,show_hidden:!1},addExpanded:function(e){var t=this.get("expandedIds");t[e.id]=e.get("id"),this.save("expandedIds",t)},removeExpanded:function(e){var t=this.get("expandedIds");delete t[e.id],this.save("expandedIds",t)},isExpanded:function(t){return e.result(this.get("expandedIds"),t,!1)},allExpanded:function(){return e.values(this.get("expandedIds"))},clearExpanded:function(){this.set("expandedIds",{})},includeDeleted:function(t){return e.isUndefined(t)||this.set("show_deleted",t),this.get("show_deleted")},includeHidden:function(t){return e.isUndefined(t)||this.set("show_hidden",t),this.get("show_hidden")},toString:function(){return"HistoryPrefs("+this.id+")"}},{storageKeyPrefix:"history:",historyStorageKey:function(e){if(!e)throw new Error("HistoryPrefs.historyStorageKey needs valid id: "+e);return a.storageKeyPrefix+e},get:function(e){return new a({id:a.historyStorageKey(e)})},clearAll:function(e){for(var t in 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t=u.default.wrapTemplate(['<div class="title-bar clear" tabindex="0">','<div class="title">','<span class="name"><%- element.element_identifier %></span>',"</div>",'<div class="subtitle"></div>',"</div>"],"element");return e.extend({},g.prototype.templates,{titleBar:t})}();var v=c.default.DatasetListItemView.extend({className:c.default.DatasetListItemView.prototype.className+" dataset-collection-element",initialize:function(e){e.logger&&(this.logger=this.model.logger=e.logger),this.log("DatasetDCEListItemView.initialize:",e),c.default.DatasetListItemView.prototype.initialize.call(this,e)},_fetchModelDetails:function(){var e=this;return e.model.inReadyState()&&!e.model.hasDetails()?e.model.fetch({silent:!0}):r.when()},toString:function(){return"DatasetDCEListItemView("+(this.model?""+this.model:"(no model)")+")"}});v.prototype.templates=function(){var t=u.default.wrapTemplate(['<div class="title-bar clear" tabindex="0">','<span class="state-icon"></span>','<div class="title">','<span 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p=e.View.extend(u.default.LoggableMixin).extend({_logNamespace:"list",viewClass:s.default.ListItemView,collectionClass:e.Collection,tagName:"div",className:"list-panel",fxSpeed:"fast",emptyMsg:(0,f.default)("This list is empty"),noneFoundMsg:(0,f.default)("No matching items found"),searchPlaceholder:(0,f.default)("search"),initialize:function(e,t){e=e||{},e.logger&&(this.logger=e.logger),this.log(this+".initialize:",e),this.fxSpeed=i.has(e,"fxSpeed")?e.fxSpeed:this.fxSpeed,this.filters=[],this.searchFor=e.searchFor||"",this.selecting=void 0===e.selecting||e.selecting,this.selected=e.selected||[],this.lastSelected=null,this.dragItems=e.dragItems||!1,this.viewClass=e.viewClass||this.viewClass,this.views=[],this.collection=e.collection||this._createDefaultCollection(),this.filters=e.filters||[],this.$scrollContainer=e.$scrollContainer||this.$scrollContainer,this.title=e.title||"",this.subtitle=e.subtitle||"",this._setUpListeners()},_setUpListeners:function(){return 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e.find(".controls").replaceWith(t),t},_renderTitle:function(e){},_renderSubtitle:function(e){},_queueNewRender:function(e,t){t=void 0===t?this.fxSpeed:t;var n=this;n.log("_queueNewRender:",e,t),r(n).queue("fx",[function(e){n.$el.fadeOut(t,e)},function(t){n._swapNewRender(e),t()},function(e){n.$el.fadeIn(t,e)},function(e){n.trigger("rendered",n),e()}])},_swapNewRender:function(e){return this.$el.empty().attr("class",this.className).append(e.children()),this.selecting&&this.showSelectors(0),this},_setUpBehaviors:function(e){return e=e||this.$el,this.$controls(e).find("[title]").tooltip(),this._renderMultiselectActionMenu(e),this},_renderMultiselectActionMenu:function(e){e=e||this.$el;var t=e.find(".list-action-menu"),n=this.multiselectActions();if(!n.length)return t.empty();var i=r(['<div class="list-action-menu btn-group">','<button class="list-action-menu-btn btn btn-default dropdown-toggle" data-toggle="dropdown">',(0,f.default)("For all selected"),"...","</button>",'<ul class="dropdown-menu pull-right" role="menu">',"</ul>","</div>"].join("")),a=n.map(function(e){var t=['<li><a href="javascript:void(0);">',e.html,"</a></li>"].join("");return r(t).click(function(t){return t.preventDefault(),e.func(t)})});return i.find("ul").append(a),t.replaceWith(i),i},multiselectActions:function(){return[]},$scrollContainer:function(e){return(e||this.$el).parent().parent()},$controls:function(e){return(e||this.$el).find("> .controls")},$list:function(e){return(e||this.$el).find("> .list-items")},$messages:function(e){return(e||this.$el).find("> .controls .messages")},$emptyMessage:function(e){return(e||this.$el).find("> .empty-message")},renderItems:function(e){e=e||this.$el;var t=this;t.log(this+".renderItems",e);var n=t.$list(e);t.freeViews();var i=t._filterCollection();return t.views=i.map(function(e){return t._createItemView(e)}),n.empty(),t.views.length&&t._attachItems(e),t._renderEmptyMessage(e).toggle(!t.views.length),t.trigger("views:ready",t.views),t.views},_filterCollection:function(){var e=this;return e.collection.filter(i.bind(e._filterItem,e))},_filterItem:function(e){var t=this;return i.every(t.filters.map(function(t){return t.call(e)}))&&(!t.searchFor||e.matchesAll(t.searchFor))},_createItemView:function(e){var t=this._getItemViewClass(e),n=i.extend(this._getItemViewOptions(e),{model:e}),r=new t(n);return this._setUpItemViewListeners(r),r},_destroyItemView:function(e){this.stopListening(e),this.views=i.without(this.views,e)},_destroyItemViews:function(e){var t=this;return t.views.forEach(function(e){t.stopListening(e)}),t.views=[],t},freeViews:function(){return this._destroyItemViews()},_getItemViewClass:function(e){return this.viewClass},_getItemViewOptions:function(e){return{fxSpeed:this.fxSpeed,expanded:!1,selectable:this.selecting,selected:i.contains(this.selected,e.id),draggable:this.dragItems}},_setUpItemViewListeners:function(e){var t=this;return this.listenTo(e,"all",function(){var e=Array.prototype.slice.call(arguments,0);e[0]="view:"+e[0],t.trigger.apply(t,e)}),this.listenTo(e,"draggable:dragstart",function(e,t){var n={},i=this.getSelectedModels();n=i.length?i.toJSON():[t.model.toJSON()],e.dataTransfer.setData("text",JSON.stringify(n))},this),t},_attachItems:function(e){var t=this;return this.$list(e).append(this.views.map(function(e){return t._renderItemView$el(e)})),this},_renderItemView$el:function(e){return e.render(0).$el},_renderEmptyMessage:function(e){this.debug("_renderEmptyMessage",e,this.searchFor);var t=this.searchFor?this.noneFoundMsg:this.emptyMsg;return this.$emptyMessage(e).text(t)},expandAll:function(){i.each(this.views,function(e){e.expand()})},collapseAll:function(){i.each(this.views,function(e){e.collapse()})},addItemView:function(e,t,n){var i=this,a=i._filterCollection().indexOf(e);if(-1!==a){var o=i._createItemView(e);return r(o).queue("fx",[function(e){i.$emptyMessage().is(":visible")?i.$emptyMessage().fadeOut(i.fxSpeed,e):e()},function(e){i._attachView(o,a),e()}]),o}},_attachView:function(e,t,n){n=!!i.isUndefined(n)||n,t=t||0;var r=this;return r.views.splice(t,0,e),r._insertIntoListAt(t,r._renderItemView$el(e).hide()),r.trigger("view:attached",e),n?e.$el.slideDown(r.fxSpeed,function(){r.trigger("view:attached:rendered")}):(e.$el.show(),r.trigger("view:attached:rendered")),e},_insertIntoListAt:function(e,t){var n=this.$list();return 0===e?n.prepend(t):n.children().eq(e-1).after(t),t},removeItemView:function(e,t,n){var a=this,o=i.find(a.views,function(t){return t.model===e});if(o)return a.views=i.without(a.views,o),a.trigger("view:removed",o),r({}).queue("fx",[function(e){o.$el.fadeOut(a.fxSpeed,e)},function(e){o.remove(),a.trigger("view:removed:rendered"),a.views.length?e():a._renderEmptyMessage().fadeIn(a.fxSpeed,e)}]),o},viewFromModelId:function(e){return i.find(this.views,function(t){return t.model.id===e})},viewFromModel:function(e){return e?this.viewFromModelId(e.id):void 0},viewsWhereModel:function(e){return this.views.filter(function(t){return i.isMatch(t.model.attributes,e)})},viewRange:function(e,t){if(e===t)return e?[e]:[];var n=this.views.indexOf(e),i=this.views.indexOf(t);return-1===n||-1===i?n===i?[]:-1===n?[t]:[e]:n<i?this.views.slice(n,i+1):this.views.slice(i,n+1)},_renderSearch:function(e){return e.find(".controls .search-input").searchInput({placeholder:this.searchPlaceholder,initialVal:this.searchFor,onfirstsearch:i.bind(this._firstSearch,this),onsearch:i.bind(this.searchItems,this),onclear:i.bind(this.clearSearch,this)}),e},_firstSearch:function(e){return this.log("onFirstSearch",e),this.searchItems(e)},searchItems:function(e,t){if(this.log("searchItems",e,this.searchFor,t),!t&&this.searchFor===e)return this;this.searchFor=e,this.renderItems(),this.trigger("search:searching",e,this);var n=this.$("> .controls .search-query");return n.val()!==e&&n.val(e),this},clearSearch:function(e){return this.searchFor="",this.trigger("search:clear",this),this.$("> .controls .search-query").val(""),this.renderItems(),this},THROTTLE_SELECTOR_FX_AT:20,showSelectors:function(e){e=void 0!==e?e:this.fxSpeed,this.selecting=!0,this.$(".list-actions").slideDown(e),e=this.views.length>=this.THROTTLE_SELECTOR_FX_AT?0:e,i.each(this.views,function(t){t.showSelector(e)})},hideSelectors:function(e){e=void 0!==e?e:this.fxSpeed,this.selecting=!1,this.$(".list-actions").slideUp(e),e=this.views.length>=this.THROTTLE_SELECTOR_FX_AT?0:e,i.each(this.views,function(t){t.hideSelector(e)}),this.selected=[],this.lastSelected=null},toggleSelectors:function(){this.selecting?this.hideSelectors():this.showSelectors()},selectAll:function(e){i.each(this.views,function(t){t.select(e)})},deselectAll:function(e){this.lastSelected=null,i.each(this.views,function(t){t.deselect(e)})},selectRange:function(e,t){var n=this.viewRange(e,t);return i.each(n,function(e){e.select()}),n},getSelectedViews:function(){return i.filter(this.views,function(e){return e.selected})},getSelectedModels:function(){return new this.collection.constructor(i.map(this.getSelectedViews(),function(e){return e.model}))},_showLoadingIndicator:function(e,t,n){this.debug("_showLoadingIndicator",this.indicator,e,t,n),t=void 0!==t?t:this.fxSpeed,this.indicator||(this.indicator=new c.default(this.$el),this.debug("\t created",this.indicator)),this.$el.is(":visible")?(this.$el.fadeOut(t),this.indicator.show(e,t,n)):this.indicator.show(0,n)},_hideLoadingIndicator:function(e,t){this.debug("_hideLoadingIndicator",this.indicator,e,t),e=void 0!==e?e:this.fxSpeed,this.indicator&&this.indicator.hide(e,t)},scrollPosition:function(){return this.$scrollContainer().scrollTop()},scrollTo:function(e,t){return t=t||0,this.$scrollContainer().animate({scrollTop:e},t),this},scrollToTop:function(e){return this.scrollTo(0,e)},scrollToItem:function(e,t){return this},scrollToId:function(e,t){return this.scrollToItem(this.viewFromModelId(e),t)},events:{"click .select-all":"selectAll","click .deselect-all":"deselectAll"},toString:function(){return"ListPanel("+this.collection+")"}});p.prototype.templates=function(){return{el:u.default.wrapTemplate(["<div>",'<div class="controls"></div>','<div class="list-items"></div>','<div class="empty-message infomessagesmall"></div>',"</div>"]),controls:u.default.wrapTemplate(['<div class="controls">','<div class="title">','<div class="name"><%- view.title %></div>',"</div>",'<div class="subtitle"><%- view.subtitle %></div>','<div class="actions"></div>','<div class="messages"></div>','<div class="search">','<div class="search-input"></div>',"</div>",'<div class="list-actions">','<div class="btn-group">','<button class="select-all btn btn-default"','data-mode="select">',(0,f.default)("All"),"</button>",'<button class="deselect-all btn btn-default"','data-mode="select">',(0,f.default)("None"),"</button>","</div>",'<div class="list-action-menu btn-group">',"</div>","</div>","</div>"])}}();var g=p.extend({modelCollectionKey:"contents",initialize:function(e){p.prototype.initialize.call(this,e),this.selecting=void 0!==e.selecting&&e.selecting,this.setModel(this.model,e)},setModel:function(e,t){if(t=t||{},this.debug(this+".setModel:",e,t),this.freeModel(),this.freeViews(),e){var n=this.model?this.model.get("id"):null;this.model=e,this.logger&&(this.model.logger=this.logger),this._setUpModelListeners(),this.stopListening(this.collection),this.collection=this.model[this.modelCollectionKey]||t.collection||this._createDefaultCollection(),this._setUpCollectionListeners(),n&&e.get("id")!==n&&this.trigger("new-model",this)}return this},freeModel:function(){return this.model&&this.stopListening(this.model),this},_setUpModelListeners:function(){return this.log(this+"._setUpModelListeners",this.model),this.listenTo(this.model,"error",function(){var e=Array.prototype.slice.call(arguments,0);e.unshift("error"),this.trigger.apply(this,e)},this),this.logger&&this.listenTo(this.model,"all",function(e){this.info(this+"(model)",e,arguments)}),this},_renderControls:function(e){this.debug(this+"(ModelListPanel)._renderControls");var t=this.model?this.model.toJSON():{},n=r(this.templates.controls(t,this));return e.find(".controls").replaceWith(n),n},toString:function(){return"ModelListPanel("+this.model+")"}});g.prototype.templates=function(){var e=u.default.wrapTemplate(['<div class="controls">','<div class="title">','<div class="name"><%- model.name %></div>',"</div>",'<div class="subtitle"><%- view.subtitle %></div>','<div class="actions"></div>','<div class="messages"></div>','<div class="search">','<div class="search-input"></div>',"</div>",'<div class="list-actions">','<div class="btn-group">','<button class="select-all btn btn-default"','data-mode="select">',(0,f.default)("All"),"</button>",'<button class="deselect-all btn btn-default"','data-mode="select">',(0,f.default)("None"),"</button>","</div>",'<div class="list-action-menu btn-group">',"</div>","</div>","</div>"]);return i.extend(i.clone(p.prototype.templates),{controls:e})}(),t.default={ListPanel:p,ModelListPanel:g}}).call(t,n(2),n(1),n(0))},function(e,t,n){"use strict";function i(e,t){function n(e){o(this).parent().children("input").val("").trigger("searchInput.clear").blur(),t.onclear()}function i(e,i){if(!i)return n();o(this).trigger("search.search",i),"function"==typeof t.onfirstsearch&&u?(u=!1,t.onfirstsearch(i)):t.onsearch(i)}function r(){return['<input type="text" name="',t.name,'" placeholder="',t.placeholder,'" ','class="search-query ',t.classes,'" ',"/>"].join("")}var l=27,c=13,d=o(e),u=!0,h={initialVal:"",name:"search",placeholder:"search",classes:"",onclear:function(){},onfirstsearch:null,onsearch:function(e){},minSearchLen:0,escWillClear:!0,oninit:function(){}};return"string"===a.default.type(t)?("toggle-loading"===t&&function(){d.find(".search-loading").toggle(),d.find(".search-clear").toggle()}(),d):("object"===a.default.type(t)&&(t=a.default.extend(!0,{},h,t)),d.addClass("search-input").prepend([function(){return o(r()).focus(function(e){o(this).select()}).keyup(function(e){if(e.preventDefault(),e.stopPropagation(),e.which===l&&t.escWillClear)n.call(this,e);else{var r=o(this).val();(e.which===c||t.minSearchLen&&r.length>=t.minSearchLen)&&i.call(this,e,r)}}).val(t.initialVal)}(),function(){return o(['<span class="search-clear fa fa-times-circle" ','title="',s("clear search (esc)"),'"></span>'].join("")).tooltip({placement:"bottom"}).click(function(e){n.call(this,e)})}(),function(){return o(['<span class="search-loading fa fa-spinner fa-spin" ','title="',s("loading..."),'"></span>'].join("")).hide().tooltip({placement:"bottom"})}()]))}var r=n(0),a=function(e){return e&&e.__esModule?e:{default:e}}(r),o=a.default,s=window._l||function(e){return e};a.default.fn.extend({searchInput:function(e){return this.each(function(){return i(this,e)})}})},function(e,t,n){"use strict";(function(e){function i(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var r=n(17),a=i(r),o=n(4),s=i(o),l=n(58),c=i(l),d=n(3),u=i(d),h=a.default.DatasetListItemView,f=h.extend({className:h.prototype.className+" history-content",initialize:function(e,t){h.prototype.initialize.call(this,e,t)},toString:function(){return"HDAListItemView("+(this.model?""+this.model:"(no model)")+")"}});f.prototype.templates=function(){var t=function(t){return'\n        <div class="title-bar clear" tabindex="0">\n            <span class="state-icon"></span>\n            <div class="title">\n                <span class="hid">'+t.hid+'</span>\n                <span class="name">'+e.escape(t.name)+"</span>\n            </div>\n            </br>\n            "+c.default.nametagTemplate(t)+"\n        </div>\n    "},n=e.extend({},h.prototype.templates.warnings,{hidden:s.default.wrapTemplate(["<% if( !dataset.visible ){ %>",'<div class="hidden-msg warningmessagesmall">',(0,u.default)("This dataset has been hidden"),"</div>","<% } %>"],"dataset")});return e.extend({},h.prototype.templates,{titleBar:t,warnings:n})}(),t.default={HDAListItemView:f}}).call(t,n(1))},function(e,t,n){"use strict";(function(e){function i(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var r=n(8),a=i(r),o=n(33),s=i(o),l=n(59),c=i(l),d=n(4),u=(i(d),n(58)),h=i(u),f=n(3),p=i(f),g=s.default.DCListItemView,m=g.extend({className:g.prototype.className+" history-content",_setUpListeners:function(){var e=this;g.prototype._setUpListeners.call(this);var t=function(t,n){e.render()};this.model.jobStatesSummary&&this.listenTo(this.model.jobStatesSummary,"change",t),this.listenTo(this.model,{"change:tags change:visible change:state":t})},_getFoldoutPanelClass:function(){return c.default.CollectionView},_swapNewRender:function(e){g.prototype._swapNewRender.call(this,e);var t,n=this.model.jobStatesSummary;t=n?n.new()?"loading":n.errored()?"error":n.terminal()?"ok":n.running()?"running":"queued":this.model.get("job_source_id")?"loading":this.model.get("populated_state")?a.default.OK:a.default.RUNNING,this.$el.addClass("state-"+t);var i=this.stateDescription();return this.$(".state-description").html(i),this.$el},stateDescription:function(){var e=this.model,t=(e.get("element_count"),e.get("job_source_type")),n=(this.model.get("collection_type"),c.default.collectionTypeDescription(e)),i=c.default.collectionDescription(e),r=e.jobStatesSummary;if(t&&"Job"!=t){if(r&&r.hasDetails()){var a=r.new(),o=a?null:r.jobCount();if(a)return'\n                        <div class="progress state-progress">\n                            <span class="note">Creating jobs.<span class="blinking">..</span></span>\n                            <div class="progress-bar info" style="width:100%">\n                        </div>';if(r.errored()){return"a "+n+" with "+r.numInError()+" / "+o+" jobs in error"}if(r.terminal())return i;var s=r.states().running||0,l=r.states().ok||0,d=l/(1*o),u=s/(1*o),h=1-d-u;return'\n                        <div class="progress state-progress">\n                            <span class="note">'+(o&&o>1?o+" jobs":"a job")+" generating a "+n+'</span>\n                            <div class="progress-bar ok" style="width:'+100*d+'%"></div>\n                            <div class="progress-bar running" style="width:'+100*u+'%"></div>\n                            <div class="progress-bar new" style="width:'+100*h+'%">\n                        </div>'}return'\n                    <div class="progress state-progress">\n                        <span class="note">Loading job data for '+n+'.<span class="blinking">..</span></span>\n                        <div class="progress-bar info" style="width:100%">\n                    </div>'}return i},toString:function(){return"HDCAListItemView("+(this.model?""+this.model:"(no model)")+")"}});m.prototype.templates=function(){var t=e.extend({},g.prototype.templates.warnings,{hidden:function(e){e.visible||(0,p.default)("This collection has been hidden")}}),n=function(t){return'\n        <div class="title-bar clear" tabindex="0">\n            <span class="state-icon"></span>\n            <div class="title">\n                <span class="hid">'+t.hid+'</span>\n                <span class="name">'+e.escape(t.name)+'</span>\n            </div>\n            <div class="state-description">\n            </div>\n            '+h.default.nametagTemplate(t)+"\n        </div>\n    "};return e.extend({},g.prototype.templates,{warnings:t,titleBar:n})}(),t.default={HDCAListItemView:m}}).call(t,n(1))},,,,,,,,,function(e,t,n){"use strict";(function(e,i,r){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=n(8),s=a(o),l=n(4),c=a(l),d=n(3),u=a(d),h=c.default.SearchableModelMixin,f=e.Model.extend(c.default.LoggableMixin).extend(c.default.mixin(h,{_logNamespace:"dataset",defaults:{state:s.default.NEW,deleted:!1,purged:!1,name:"(unnamed dataset)",accessible:!0,data_type:"",file_ext:"",file_size:0,meta_files:[],misc_blurb:"",misc_info:"",tags:[]},initialize:function(e,t){this.debug(this+"(Dataset).initialize",e,t),
 //!! this state is not in trans.app.model.Dataset.states - set it here -
-this.get("accessible")||this.set("state",s.default.NOT_VIEWABLE),this.urls=this._generateUrls(),this._setUpListeners()},_generateUrls:function(){var e=this.get("id");if(!e)return{};var t={purge:"datasets/"+e+"/purge_async",display:"datasets/"+e+"/display/?preview=True",edit:"datasets/edit?dataset_id="+e,download:"datasets/"+e+"/display"+this._downloadQueryParameters(),report_error:"dataset/errors?id="+e,rerun:"tool_runner/rerun?id="+e,show_params:"datasets/"+e+"/show_params",visualization:"visualization",meta_download:"dataset/get_metadata_file?hda_id="+e+"&metadata_name="};return i.each(t,function(e,n){t[n]=Galaxy.root+e}),this.urls=t,t},_downloadQueryParameters:function(){return"?to_ext="+this.get("file_ext")},_setUpListeners:function(){this.on("change:state",function(e,t){this.log(this+" has changed state:",e,t),this.inReadyState()&&this.trigger("state:ready",e,t,this.previous("state"))}),this.on("change:id change:file_ext",function(e){this._generateUrls()})},toJSON:function(){var t=e.Model.prototype.toJSON.call(this);return i.extend(t,{urls:this.urls})},isDeletedOrPurged:function(){return this.get("deleted")||this.get("purged")},inReadyState:function(){var e=i.contains(s.default.READY_STATES,this.get("state"));return this.isDeletedOrPurged()||e},hasDetails:function(){return!this.get("accessible")||this.has("annotation")},hasData:function(){return this.get("file_size")>0},fetch:function(t){var n=this;return e.Model.prototype.fetch.call(this,t).always(function(){n._generateUrls()})},parse:function(t,n){var i=e.Model.prototype.parse.call(this,t,n);return i.create_time&&(i.create_time=new Date(i.create_time)),i.update_time&&(i.update_time=new Date(i.update_time)),i},save:function(t,n){return n=n||{},n.wait=!!i.isUndefined(n.wait)||n.wait,e.Model.prototype.save.call(this,t,n)},delete:function(e){return this.get("deleted")?r.when():this.save({deleted:!0},e)},undelete:function(e){return!this.get("deleted")||this.get("purged")?r.when():this.save({deleted:!1},e)},purge:function(e){if(this.get("purged"))return r.when();e=e||{},e.url=this.urls.purge;var t=this,n=r.ajax(e);return n.done(function(e,n,i){t.set({deleted:!0,purged:!0})}),n.fail(function(n,i,r){var a=(0,u.default)("Unable to purge dataset");n.responseJSON&&n.responseJSON.error?a=n.responseJSON.error:-1!==n.responseText.indexOf("Removal of datasets by users is not allowed in this Galaxy instance")&&(a="Removal of datasets by users is not allowed in this Galaxy instance"),n.responseText=a,t.trigger("error",t,n,e,(0,u.default)(a),{error:a})}),n},searchAttributes:["name","file_ext","genome_build","misc_blurb","misc_info","annotation","tags"],searchAliases:{title:"name",format:"file_ext",database:"genome_build",blurb:"misc_blurb",description:"misc_blurb",info:"misc_info",tag:"tags"},toString:function(){var e=this.get("id")||"";return this.get("name")&&(e='"'+this.get("name")+'",'+e),"Dataset("+e+")"}})),p=e.Collection.extend(c.default.LoggableMixin).extend({_logNamespace:"dataset",model:f,urlRoot:Galaxy.root+"api/datasets",url:function(){return this.urlRoot},ids:function(){return this.map(function(e){return e.get("id")})},notReady:function(){return this.filter(function(e){return!e.inReadyState()})},haveDetails:function(){return this.all(function(e){return e.hasDetails()})},ajaxQueue:function(e,t){var n=r.Deferred(),i=this.length,a=[];if(!i)return n.resolve([]),n;var o=this.chain().reverse().map(function(r,s){return function(){var l=e.call(r,t);l.done(function(e){n.notify({curr:s,total:i,response:e,model:r})}),l.always(function(e){a.push(e),o.length?o.shift()():n.resolve(a)})}}).value();return o.shift()(),n},matches:function(e){return this.filter(function(t){return t.matches(e)})},toString:function(){return["DatasetAssociationCollection(",this.length,")"].join("")}});t.default={DatasetAssociation:f,DatasetAssociationCollection:p}}).call(t,n(2),n(1),n(0))},function(e,t,n){"use strict";(function(e){function i(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var r=n(8),a=(i(r),n(4)),o=(i(a),n(3)),s=(i(o),1e3);try{s=localStorage.getItem("collectionFuzzyCountDefault")||s}catch(e){}var l={defaults:{history_id:null,history_content_type:null,hid:null,visible:!0},idAttribute:"type_id",hidden:function(){return!this.get("visible")},isVisible:function(e,t){var n=!0;return e||!this.get("deleted")&&!this.get("purged")||(n=!1),t||this.get("visible")||(n=!1),n},urlRoot:Galaxy.root+"api/histories/",url:function(){var e=this.get("history_content_type"),t=this.get("history_id"),n=this.get("id"),i=""+this.urlRoot+t+"/contents/"+e+"s/"+n;return"dataset_collection"==e&&(i=i+"?view=element-reference&fuzzy_count="+s),i},hide:function(t){return this.get("visible")?this.save({visible:!1},t):e.when()},unhide:function(t){return this.get("visible")?e.when():this.save({visible:!0},t)},toString:function(){return[this.get("type_id"),this.get("hid"),this.get("name")].join(":")}};t.default={HistoryContentMixin:l}}).call(t,n(0))},function(e,t,n){"use strict";(function(e){Object.defineProperty(t,"__esModule",{value:!0});var n={_validationWarning:function(e,t){"name"===e&&(e=this.$(".collection-name").add(this.$(".collection-name-prompt")),this.$(".collection-name").focus().select()),t?(e=e||this.$(".validation-warning"),e.removeClass("validation-warning")):e.addClass("validation-warning")},_changeHideOriginals:function(e){this.hideOriginals=this.$(".hide-originals").prop("checked")},_changeName:function(e){this._validationWarning("name",!!this._getName())},_nameCheckForEnter:function(e){13!==e.keyCode||this.blocking||this._clickCreate()},_getName:function(){return e.escape(this.$(".collection-name").val())},_clickMoreHelp:function(e){e.stopPropagation(),this.$(".main-help").addClass("expanded"),this.$(".more-help").hide()},_clickLessHelp:function(e){e.stopPropagation(),this.$(".main-help").removeClass("expanded"),this.$(".more-help").show()},_toggleHelp:function(e){e.stopPropagation(),this.$(".main-help").toggleClass("expanded"),this.$(".more-help").toggle()},_showAlert:function(e,t){t=t||"alert-danger",this.$(".main-help").hide(),this.$(".header .alert").attr("class","alert alert-dismissable").addClass(t).show().find(".alert-message").html(e)},_hideAlert:function(e){this.$(".main-help").show(),this.$(".header .alert").hide()},_cancelCreate:function(e){"function"==typeof this.oncancel&&this.oncancel.call(this)},_clickCreate:function(e){var t=this._getName();t?this.blocking||this.createList(t):this._validationWarning("name")},_setUpCommonSettings:function(e){this.hideOriginals=e.defaultHideSourceItems||!1},_renderFooter:function(t,n){var i=this,r=this.$(".footer").empty().html(this.templates.footer());return e.each(this.footerSettings,function(e,t){i.$(t).prop("checked",i[e])}),"function"==typeof this.oncancel&&this.$(".cancel-create.btn").show(),r},_creatorTemplates:{main:e.template(['<div class="header flex-row no-flex"></div>','<div class="middle flex-row flex-row-container"></div>','<div class="footer flex-row no-flex"></div>'].join(""))}};t.default={CollectionCreatorMixin:n}}).call(t,n(1))},function(e,t,n){"use strict";function i(e,t){var n=/(-?[0-9\.]+)/g,i=e.toString().toLowerCase()||"",r=t.toString().toLowerCase()||"",a=String.fromCharCode(0),o=i.replace(n,a+"$1"+a).split(a),s=r.replace(n,a+"$1"+a).split(a),l=new Date(i).getTime(),c=l?new Date(r).getTime():null;if(c){if(l<c)return-1;if(l>c)return 1}for(var d,u,h=0,f=Math.max(o.length,s.length);h<f;h++){if(d=parseFloat(o[h])||o[h],u=parseFloat(s[h])||s[h],d<u)return-1;if(d>u)return 1}return 0}Object.defineProperty(t,"__esModule",{value:!0}),t.default=i},function(e,t,n){"use strict";var i=n(0),r=function(e){return e&&e.__esModule?e:{default:e}}(i),a=r.default;r.default.fn.extend({hoverhighlight:function(e,t){return e=e||"body",this.length?(a(this).each(function(){var n=a(this),i=n.data("target");i&&n.mouseover(function(n){a(i,e).css({background:t})}).mouseout(function(e){a(i).css({background:""})})}),this):this}})},function(e,t,n){"use strict";(function(e,i,r){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=n(9),s=a(o),l=n(36),c=a(l),d=n(3),u=a(d),h={defaultName:e.template("Copy of '<%- name %>'"),title:e.template((0,u.default)("Copying history")+' "<%- name %>"'),submitLabel:(0,u.default)("Copy"),errorMessage:(0,u.default)("History could not be copied."),progressive:(0,u.default)("Copying history"),activeLabel:(0,u.default)("Copy only the active, non-deleted datasets"),allLabel:(0,u.default)("Copy all datasets including deleted ones"),anonWarning:(0,u.default)("As an anonymous user, unless you login or register, you will lose your current history ")+(0,u.default)("after copying this history. "),_template:e.template(["<% if( isAnon ){ %>",'<div class="warningmessage">',"<%- anonWarning %>",(0,u.default)("You can"),' <a href="/user/login">',(0,u.default)("login here"),"</a> ",(0,u.default)("or")," ",' <a href="/user/create">',(0,u.default)("register here"),"</a>.","</div>","<% } %>","<form>",'<label for="copy-modal-title">',(0,u.default)("Enter a title for the new history"),":","</label><br />",'<input id="copy-modal-title" class="form-control" style="width: 100%" value="<%= name %>" />','<p class="invalid-title bg-danger" style="color: red; margin: 8px 0px 8px 0px; display: none">',(0,u.default)("Please enter a valid history title"),"</p>","<% if( allowAll ){ %>","<br />","<p>",(0,u.default)("Choose which datasets from the original history to include:"),"</p>",'<input name="copy-what" type="radio" id="copy-non-deleted" value="copy-non-deleted" ','<% if( copyWhat === "copy-non-deleted" ){ print( "checked" ); } %>/>','<label for="copy-non-deleted"> <%- activeLabel %></label>',"<br />",'<input name="copy-what" type="radio" id="copy-all" value="copy-all" ','<% if( copyWhat === "copy-all" ){ print( "checked" ); } %>/>','<label for="copy-all"> <%- allLabel %></label>',"<% } %>","</form>"].join("")),_showAjaxIndicator:function(){var e='<p><span class="fa fa-spinner fa-spin"></span> '+this.progressive+"...</p>";this.modal.$(".modal-body").empty().append(e).css({"margin-top":"8px"})},dialog:function(t,n,a){function o(){var e=t.$("#copy-modal-title").val();if(!e)return void t.$(".invalid-title").show();var i="copy-all"===t.$('input[name="copy-what"]:checked').val();t.$("button").prop("disabled",!0),s._showAjaxIndicator(),n.copy(!0,e,i).done(function(e){l.resolve(e)}).fail(function(t,r,a){var o={name:e,copyAllDatasets:i};c.default.ajaxErrorModal(n,t,o,s.errorMessage),l.rejectWith(l,arguments)}).done(function(){g&&t.hide()})}a=a||{};var s=this,l=i.Deferred(),d=a.nameFn||this.defaultName,h=d({name:n.get("name")}),f=a.allDatasets?"copy-all":"copy-non-deleted",p=!!e.isUndefined(a.allowAll)||a.allowAll,g=!!e.isUndefined(a.autoClose)||a.autoClose;this.modal=t;var m=a.closing_callback;return t.show(e.extend(a,{title:this.title({name:n.get("name")}),body:r(s._template({name:h,isAnon:Galaxy.user.isAnonymous(),allowAll:p,copyWhat:f,activeLabel:this.activeLabel,allLabel:this.allLabel,anonWarning:this.anonWarning})),buttons:e.object([[(0,u.default)("Cancel"),function(){t.hide()}],[this.submitLabel,o]]),height:"auto",closing_events:!0,closing_callback:function(e){e&&l.reject({cancelled:!0}),m&&m(e)}})),t.$("#copy-modal-title").focus().select(),t.$("#copy-modal-title").on("keydown",function(e){13===e.keyCode&&(e.preventDefault(),o())}),l}},f=e.extend({},h,{defaultName:e.template("imported: <%- name %>"),title:e.template((0,u.default)("Importing history")+' "<%- name %>"'),submitLabel:(0,u.default)("Import"),errorMessage:(0,u.default)("History could not be imported."),progressive:(0,u.default)("Importing history"),activeLabel:(0,u.default)("Import only the active, non-deleted datasets"),allLabel:(0,u.default)("Import all datasets including deleted ones"),anonWarning:(0,u.default)("As an anonymous user, unless you login or register, you will lose your current history ")+(0,u.default)("after importing this history. ")}),p=function(e,t){t=t||{};var n=window.parent.Galaxy.modal||new s.default.View({});return t.useImport?f.dialog(n,e,t):h.dialog(n,e,t)};t.default=p}).call(t,n(1),n(0),n(0))},function(e,t,n){"use strict";(function(e){function i(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}Object.defineProperty(t,"__esModule",{value:!0});var r=n(1),a=i(r),o=n(2),s=i(o),l=n(4),c=function(e){return e&&e.__esModule?e:{default:e}}(l),d=s.Collection.extend({initialize:function(e,t){s.Collection.prototype.initialize.call(this,e,t),this.setOrder(t.order||this.order,{silent:!0})},_setUpListeners:function(){return this.on({"changed-order":this.sort})},fetch:function(e){return e=this._buildFetchOptions(e),Galaxy.debug("fetch options:",e),s.Collection.prototype.fetch.call(this,e)},_buildFetchOptions:function(e){e=a.clone(e)||{};var t=this;e.traditional=!0,e.data=e.data||t._buildFetchData(e),Galaxy.debug("data:",e.data);var n=this._buildFetchFilters(e);return Galaxy.debug("filters:",n),a.isEmpty(n)||a.extend(e.data,this._fetchFiltersToAjaxData(n)),Galaxy.debug("data:",e.data),e},_buildFetchData:function(e){var t={};return this.order&&(t.order=this.order),a.defaults(a.pick(e,this._fetchParams),t)},_fetchParams:["order","limit","offset","view","keys"],_buildFetchFilters:function(e){return a.clone(e.filters||{})},_fetchFiltersToAjaxData:function(e){var t={q:[],qv:[]};return a.each(e,function(e,n){void 0!==e&&""!==e&&(!0===e&&(e="True"),!1===e&&(e="False"),null===e&&(e="None"),t.q.push(n),t.qv.push(e))}),t},reset:function(e,t){return this.allFetched=!1,s.Collection.prototype.reset.call(this,e,t)},order:null,comparators:{update_time:c.default.buildComparator("update_time",{ascending:!1}),"update_time-asc":c.default.buildComparator("update_time",{ascending:!0}),create_time:c.default.buildComparator("create_time",{ascending:!1}),"create_time-asc":c.default.buildComparator("create_time",{ascending:!0})},setOrder:function(e,t){t=t||{};var n=this,i=n.comparators[e];if(a.isUndefined(i))throw new Error("unknown order: "+e);if(i!==n.comparator)return n.order=e,n.comparator=i,t.silent||n.trigger("changed-order",t),n}}),u=d.extend({limitPerPage:500,initialize:function(e,t){d.prototype.initialize.call(this,e,t),this.currentPage=t.currentPage||0},getTotalItemCount:function(){return this.length},shouldPaginate:function(){return this.getTotalItemCount()>=this.limitPerPage},getLastPage:function(){return Math.floor(this.getTotalItemCount()/this.limitPerPage)},getPageCount:function(){return this.getLastPage()+1},getPageLimitOffset:function(e){return e=this.constrainPageNum(e),{limit:this.limitPerPage,offset:e*this.limitPerPage}},constrainPageNum:function(e){return Math.max(0,Math.min(e,this.getLastPage()))},fetchPage:function(e,t){var n=this;return e=n.constrainPageNum(e),n.currentPage=e,t=a.defaults(t||{},n.getPageLimitOffset(e)),n.trigger("fetching-more"),n.fetch(t).always(function(){n.trigger("fetching-more-done")})},fetchCurrentPage:function(e){return this.fetchPage(this.currentPage,e)},fetchPrevPage:function(e){return this.fetchPage(this.currentPage-1,e)},fetchNextPage:function(e){return this.fetchPage(this.currentPage+1,e)}}),h=d.extend({limitOnFirstFetch:null,limitPerFetch:100,initialize:function(e,t){d.prototype.initialize.call(this,e,t),this.limitOnFirstFetch=t.limitOnFirstFetch||this.limitOnFirstFetch,this.limitPerFetch=t.limitPerFetch||this.limitPerFetch,this.allFetched=!1,this.lastFetched=t.lastFetched||0},_buildFetchOptions:function(e){return e.remove=e.remove||!1,d.prototype._buildFetchOptions.call(this,e)},fetchFirst:function(e){return Galaxy.debug("ControlledFetchCollection.fetchFirst:",e),e=e?a.clone(e):{},this.allFetched=!1,this.lastFetched=0,this.fetchMore(a.defaults(e,{reset:!0,limit:this.limitOnFirstFetch}))},fetchMore:function(t){Galaxy.debug("ControlledFetchCollection.fetchMore:",t),t=a.clone(t||{});var n=this;if(Galaxy.debug("fetchMore, options.reset:",t.reset),!t.reset&&n.allFetched)return e.when();t.reset?t.offset=0:void 0===t.offset&&(t.offset=n.lastFetched);var i=t.limit=t.limit||n.limitPerFetch||null;return Galaxy.debug("fetchMore, limit:",i,"offset:",t.offset),n.trigger("fetching-more"),n.fetch(t).always(function(){n.trigger("fetching-more-done")}).done(function(e){var t=a.isArray(e)?e.length:0;n.lastFetched+=t,Galaxy.debug("fetchMore, lastFetched:",n.lastFetched),(!i||t<i)&&(n.allFetched=!0,n.trigger("all-fetched",this))})},fetchAll:function(e){e=e||{};var t=this;return e=a.pick(e,"silent"),e.filters={},t.fetch(e).done(function(){t.allFetched=!0,t.trigger("all-fetched",t)})}});t.default={ControlledFetchCollection:d,PaginatedCollection:u,InfinitelyScrollingCollection:h}}).call(t,n(0))},function(e,t,n){"use strict";(function(e,i){function r(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=n(38),o=r(a),s=n(29),l=r(s),c=n(16),d=r(c),u=n(30),h=(r(u),n(40)),f=r(h),p=n(41),g=r(p),m=n(66),_=(r(m),n(36)),v=r(_),y=n(10),b=r(y),w=n(4),x=r(w),k=n(3),M=r(k);n(39);var C=o.default.ModelListPanel,S=C.extend({_logNamespace:"history",HDAViewClass:f.default.HDAListItemView,HDCAViewClass:g.default.HDCAListItemView,collectionClass:d.default.HistoryContents,modelCollectionKey:"contents",tagName:"div",className:C.prototype.className+" history-panel",emptyMsg:(0,M.default)("This history is empty"),noneFoundMsg:(0,M.default)("No matching datasets found"),searchPlaceholder:(0,M.default)("search datasets"),initialize:function(e){C.prototype.initialize.call(this,e),this.linkTarget=e.linkTarget||"_blank"},_createDefaultCollection:function(){return new this.collectionClass([],{history:this.model})},freeModel:function(){return C.prototype.freeModel.call(this),this.model&&this.model.stopPolling(),this},_setUpListeners:function(){C.prototype._setUpListeners.call(this),this.on({error:function(e,t,n,i,r){this.errorHandler(e,t,n,i,r)},"views:ready view:attached view:removed":function(e){this._renderSelectButton()},"view:attached":function(e){this.scrollTo(0)}})},loadHistory:function(t,n,i){var r=this;return i=e.extend(i||{silent:!0}),this.info("loadHistory:",t,n,i),this.setModel(new l.default.History({id:t})),i.silent=!0,this.trigger("loading"),this.model.fetchWithContents(n,i).always(function(){r.render(),r.trigger("loading-done")})},refreshContents:function(e){return this.model?this.model.refresh(e):i.when()},_setUpCollectionListeners:function(){return C.prototype._setUpCollectionListeners.call(this),this.listenTo(this.collection,{"fetching-more":function(){this._toggleContentsLoadingIndicator(!0),this.$emptyMessage().hide()},"fetching-more-done":function(){this._toggleContentsLoadingIndicator(!1)}})},_showLoadingIndicator:function(t,n,r){var a=i('<div class="loading-indicator"/>');this.$el.html(a.text(t).slideDown(e.isUndefined(n)?this.fxSpeed:n))},_hideLoadingIndicator:function(t){this.$(".loading-indicator").slideUp(e.isUndefined(t)?this.fxSpeed+200:t,function(){i(this).remove()})},_buildNewRender:function(){var e=C.prototype._buildNewRender.call(this);return this._renderSelectButton(e),e},_renderSelectButton:function(e){if(e=e||this.$el,!this.multiselectActions().length)return null;if(!this.views.length)return this.hideSelectors(),e.find(".controls .actions .show-selectors-btn").remove(),null;var t=e.find(".controls .actions .show-selectors-btn");return t.length?t:(0,b.default)({title:(0,M.default)("Operations on multiple datasets"),classes:"show-selectors-btn",faIcon:"fa-check-square-o"}).prependTo(e.find(".controls .actions"))},_renderEmptyMessage:function(e){var t=this.$emptyMessage(e);return this.model.get("contents_active").active<=0?t.empty().append(this.emptyMsg).show():this.searchFor&&this.model.contents.haveSearchDetails()&&!this.views.length?t.empty().append(this.noneFoundMsg).show():(t.hide(),i())},$scrollContainer:function(e){return this.$list(e)},_toggleContentsLoadingIndicator:function(e){e?this.$list().html('<div class="contents-loading-indicator"><span class="fa fa-2x fa-spinner fa-spin"/></div>'):this.$list().find(".contents-loading-indicator").remove()},renderItems:function(e){e=e||this.$el;var t=this.$list(e);i(".tooltip").remove(),t.empty(),this.views=[];var n=this._filterCollection();return n.length?(this._renderPagination(e),this.views=this._renderSomeItems(n,t)):e.find("> .controls .list-pagination").empty(),this._renderEmptyMessage(e).toggle(!n.length),this.trigger("views:ready",this.views),this.views},_renderPagination:function(e){var t=e.find("> .controls .list-pagination");return this.searchFor||!this.model.contents.shouldPaginate()?t.empty():(t.html(this.templates.pagination({current:this.model.contents.currentPage+1,last:this.model.contents.getLastPage()+1},this)),t.find("select.pages").tooltip(),t)},_renderSomeItems:function(e,t){var n=this,i=[];return t.append(e.map(function(e){var t=n._createItemView(e);return i.push(t),n._renderItemView$el(t)})),i},_filterItem:function(e){var t=this.model.contents;return(t.includeHidden||!e.hidden())&&(t.includeDeleted||!e.isDeletedOrPurged())&&C.prototype._filterItem.call(this,e)},_getItemViewClass:function(e){var t=e.get("history_content_type");switch(t){case"dataset":return this.HDAViewClass;case"dataset_collection":return this.HDCAViewClass}throw new TypeError("Unknown history_content_type: "+t)},_getItemViewOptions:function(t){var n=C.prototype._getItemViewOptions.call(this,t);return e.extend(n,{linkTarget:this.linkTarget,expanded:this.model.contents.storage.isExpanded(t.id),hasUser:this.model.ownedByCurrUser()})},_setUpItemViewListeners:function(e){var t=this;return C.prototype._setUpItemViewListeners.call(t,e),t.listenTo(e,{expanded:function(e){t.model.contents.storage.addExpanded(e.model)},collapsed:function(e){t.model.contents.storage.removeExpanded(e.model)}})},collapseAll:function(){this.model.contents.storage.clearExpanded(),C.prototype.collapseAll.call(this)},getSelectedModels:function(){var e=C.prototype.getSelectedModels.call(this);return e.historyId=this.collection.historyId,e},events:e.extend(e.clone(C.prototype.events),{"click .show-selectors-btn":"toggleSelectors","click > .controls .prev":"_clickPrevPage","click > .controls .next":"_clickNextPage","change > .controls .pages":"_changePageSelect","click .messages [class$=message]":"clearMessages"}),_clickPrevPage:function(e){this.model.stopPolling(),this.model.contents.fetchPrevPage()},_clickNextPage:function(e){this.model.stopPolling(),this.model.contents.fetchNextPage()},_changePageSelect:function(e){this.model.stopPolling();var t=i(e.currentTarget).val();this.model.contents.fetchPage(t)},toggleShowDeleted:function(e,t){e=void 0!==e?e:!this.model.contents.includeDeleted;var n=this.model.contents;return n.setIncludeDeleted(e,t),this.trigger("show-deleted",e),n.fetchCurrentPage({renderAll:!0}),e},toggleShowHidden:function(e,t,n){e=void 0!==e?e:!this.model.contents.includeHidden;var i=this.model.contents;return i.setIncludeHidden(e,n),this.trigger("show-hidden",e),i.fetchCurrentPage({renderAll:!0}),e},_firstSearch:function(e){var t=this;if(this.log("onFirstSearch",e),this.model.contents.haveSearchDetails())return void this.searchItems(e);this.$("> .controls .search-input").searchInput("toggle-loading"),this.searchFor=e;this.model.contents.progressivelyFetchDetails({silent:!0}).progress(function(e,n,i){t.renderItems(),t.trigger("search:loading-progress",n,i)}).always(function(){t.$el.find("> .controls .search-input").searchInput("toggle-loading")}).done(function(){t.searchItems(e,"force")})},clearSearch:function(e){var t=this;return this.searchFor?(this.searchFor="",this.trigger("search:clear",this),this.$("> .controls .search-query").val(""),this.model.contents.fetchCurrentPage({silent:!0}).done(function(){t.renderItems()}),this):this},errorHandler:function(t,n,i){if(!n||0!==n.status||0!==n.readyState){if(this.error(t,n,i),e.isString(t)&&e.isString(n)){var r=t,a=n;return v.default.errorModal(r,a,i)}return n&&502===n.status?v.default.badGatewayErrorModal():v.default.ajaxErrorModal(t,n,i)}},clearMessages:function(t){return(e.isUndefined(t)?this.$messages().children('[class$="message"]'):i(t.currentTarget)).fadeOut(this.fxSpeed,function(){i(this).remove()}),this},scrollToHid:function(t){return this.scrollToItem(e.first(this.viewsWhereModel({hid:t})))},ordinalIndicator:function(e){var t=""+e;switch(t.charAt(t.length-1)){case"1":return t+"st";case"2":return t+"nd";case"3":return t+"rd";default:return t+"th"}},toString:function(){return"HistoryView("+(this.model?this.model.get("name"):"")+")"}});S.prototype.templates=function(){var t=function(){return'<div>\n            <div class="controls"></div>\n            <ul class="list-items"></ul>\n            <div class="empty-message infomessagesmall"></div>\',\n        </div>'},n=x.default.wrapTemplate(['<div class="controls">','<div class="title">','<div class="name"><%- history.name %></div>',"</div>",'<div class="subtitle"></div>','<div class="history-size"><%- history.nice_size %></div>','<div class="actions"></div>','<div class="messages">',"<% if( history.deleted && history.purged ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,M.default)("This history has been purged and deleted"),"</div>","<% } else if( history.deleted ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,M.default)("This history has been deleted"),"</div>","<% } else if( history.purged ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,M.default)("This history has been purged"),"</div>","<% } %>","<% if( history.message ){ %>",'<div class="<%= history.message.level || "info" %>messagesmall">',"<%= history.message.text %>","</div>","<% } %>","</div>",'<div class="tags-display"></div>','<div class="annotation-display"></div>','<div class="search">','<div class="search-input"></div>',"</div>",'<div class="list-actions">','<div class="btn-group">','<button class="select-all btn btn-default"','data-mode="select">',(0,M.default)("All"),"</button>",'<button class="deselect-all btn btn-default"','data-mode="select">',(0,M.default)("None"),"</button>","</div>",'<div class="list-action-menu btn-group">',"</div>","</div>",'<div class="list-pagination form-inline"></div>',"</div>"],"history"),i=x.default.wrapTemplate(['<button class="prev" <%- pages.current === 1 ? "disabled" : "" %>>previous</button>','<select class="pages form-control" ','title="',(0,M.default)("Click to open and select a page. Begin typing a page number to select it"),'">',"<% _.range( 1, pages.last + 1 ).forEach( function( i ){ %>",'<option value="<%- i - 1 %>" <%- i === pages.current ? "selected" : "" %>>',"<%- view.ordinalIndicator( i ) %> of <%- pages.last %> pages","</option>","<% }); %>","</select>",'<button class="next" <%- pages.current === pages.last ? "disabled" : "" %>>next</button>'],"pages");return e.extend(e.clone(C.prototype.templates),{el:t,controls:n,pagination:i})}(),t.default={HistoryView:S}}).call(t,n(1),n(0))},function(e,t,n){"use strict";(function(e){function n(t){return'<span class="label label-info">'+e.escape(t.slice(5))+"</span>"}function i(t){var i=e.filter(e.uniq(t.tags),function(e){return 0===e.indexOf("name:")}),r=e.sortBy(i).map(n);return'\n        <div class="nametags" title="'+i.length+' nametags">\n            '+r.join("")+"\n        </div>"}Object.defineProperty(t,"__esModule",{value:!0}),t.default={nametagTemplate:i}}).call(t,n(1))},function(e,t,n){"use strict";(function(e){function i(e){return e&&e.__esModule?e:{default:e}}function r(e){var t=e.get("collection_type");return"list"==t?(0,f.default)("list"):"paired"==t?(0,f.default)("dataset pair"):"list:paired"==t?(0,f.default)("list of pairs"):(0,f.default)("nested list")}function a(e){var t=e.get("element_count"),n="a "+r(e);if(t){var i;1==t?i="with 1 item":t&&(i="with "+t+" items"),n=n+" "+(0,f.default)(i)}return n}Object.defineProperty(t,"__esModule",{value:!0});var o=n(38),s=i(o),l=n(28),c=(i(l),n(32)),d=i(c),u=n(4),h=(i(u),n(3)),f=i(h),p=s.default.ModelListPanel,g=p.extend({_logNamespace:"collections",className:p.prototype.className+" dataset-collection-panel",DatasetDCEViewClass:d.default.DatasetDCEListItemView,modelCollectionKey:"elements",initialize:function(e){p.prototype.initialize.call(this,e),this.linkTarget=e.linkTarget||"_blank",this.hasUser=e.hasUser,this.panelStack=[],this.parentName=e.parentName,this.foldoutStyle=e.foldoutStyle||"foldout",this.downloadUrl=Galaxy.root+"api/dataset_collections/"+this.model.attributes.id+"/download"},getNestedDCDCEViewClass:function(){return d.default.NestedDCDCEListItemView.extend({foldoutPanelClass:g})},_queueNewRender:function(e,t){t=void 0===t?this.fxSpeed:t;var n=this;this.handleWarning(e),n.log("_queueNewRender:",e,t),n._swapNewRender(e),n.trigger("rendered",n)},handleWarning:function(e){var t=this.views.length,n=this.model.get("element_count");if(n&&n!==t){var i=(0,f.default)("displaying only "+t+" of "+n+" items");e.find(".elements-warning").html('<div class="warningmessagesmall">'+i+"</div>")}},_filterCollection:function(){return this.model.getVisibleContents()},_getItemViewClass:function(e){switch(e.get("element_type")){case"hda":return this.DatasetDCEViewClass;case"dataset_collection":return this.getNestedDCDCEViewClass()}throw new TypeError("Unknown element type:",e.get("element_type"))},_getItemViewOptions:function(t){var n=p.prototype._getItemViewOptions.call(this,t);return e.extend(n,{linkTarget:this.linkTarget,hasUser:this.hasUser,foldoutStyle:this.foldoutStyle})},_setUpItemViewListeners:function(e){var t=this;return p.prototype._setUpItemViewListeners.call(t,e),t.listenTo(e,{"expanded:drilldown":function(e,t){this._expandDrilldownPanel(t)},"collapsed:drilldown":function(e,t){this._collapseDrilldownPanel(t)}}),this},_expandDrilldownPanel:function(e){this.panelStack.push(e),this.$("> .controls").add(this.$list()).hide(),e.parentName=this.model.get("name"),this.$el.append(e.render().$el)},_collapseDrilldownPanel:function(e){this.panelStack.pop(),this.render()},events:{"click .navigation .back":"close"},close:function(e){this.remove(),this.trigger("close")},toString:function(){return"CollectionView("+(this.model?this.model.get("name"):"")+")"}});g.prototype.templates=function(){var t=function(t,n){var i=a(n.model);return'\n        <div class="controls">\n            <div class="navigation">\n            <a class="back" href="javascript:void(0)">\n                <span class="fa fa-icon fa-angle-left"></span>\n                '+(0,f.default)("Back to ")+"\n                "+e.escape(n.parentName)+'\n            </a>\n            </div>\n            <div class="title">\n                <div class="name">'+(e.escape(t.name)||e.escape(t.element_identifier))+'</div>\n                <div class="subtitle">\n                    '+i+'\n                </div>\n            </div>\n            <div class="elements-warning">\n            </div>\n            <div class="tags-display"></div>\n            <div class="actions">\n                <a class="download-btn icon-btn" href="'+n.downloadUrl+'"\n                   title="" download="" data-original-title="Download Collection">\n                   <span class="fa fa-floppy-o"></span>\n                </a>\n            </div>\n        </div>'};return e.extend(e.clone(p.prototype.templates),{controls:t})}(),t.default={collectionTypeDescription:r,collectionDescription:a,CollectionView:g}}).call(t,n(1))},function(e,t,n){"use strict";(function(e,i){function r(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=n(8),o=r(a),s=n(17),l=r(s),c=n(21),d=r(c),u=n(61),h=r(u),f=n(10),p=r(f),g=n(4),m=r(g),_=n(3),v=r(_),y=l.default.DatasetListItemView,b=y.extend({initialize:function(e){y.prototype.initialize.call(this,e),this.hasUser=e.hasUser,this.purgeAllowed=e.purgeAllowed||!1,this.tagsEditorShown=e.tagsEditorShown||!1,this.annotationEditorShown=e.annotationEditorShown||!1},_renderPrimaryActions:function(){var e=y.prototype._renderPrimaryActions.call(this);return this.model.get("state")===o.default.NOT_VIEWABLE?e:y.prototype._renderPrimaryActions.call(this).concat([this._renderEditButton(),this._renderDeleteButton()])},_renderEditButton:function(){var t=this;if(this.model.get("state")===o.default.DISCARDED||!this.model.get("accessible"))return null;var n=this.model.get("purged"),i=this.model.get("deleted"),r={title:(0,v.default)("Edit attributes"),href:Galaxy.root+"datasets/edit?dataset_id="+this.model.attributes.id,faIcon:"fa-pencil",classes:"edit-btn",onclick:function(e){Galaxy.router&&(e.preventDefault(),Galaxy.router.push("datasets/edit",{dataset_id:t.model.attributes.id}))}};return i||n?(r.disabled=!0,n?r.title=(0,v.default)("Cannot edit attributes of datasets removed from disk"):i&&(r.title=(0,v.default)("Undelete dataset to edit attributes"))):e.contains([o.default.UPLOAD,o.default.NEW],this.model.get("state"))&&(r.disabled=!0,r.title=(0,v.default)("This dataset is not yet editable")),(0,p.default)(r)},_renderDeleteButton:function(){if(!this.model.get("accessible"))return null;var e=this,t=this.model.isDeletedOrPurged();return(0,p.default)({title:t?(0,v.default)("Dataset is already deleted"):(0,v.default)("Delete"),disabled:t,faIcon:"fa-times",classes:"delete-btn",onclick:function(){e.$el.find(".icon-btn.delete-btn").trigger("mouseout"),e.model.delete()}})},_renderDetails:function(){var t=y.prototype._renderDetails.call(this),n=this.model.get("state");return!this.model.isDeletedOrPurged()&&e.contains([o.default.OK,o.default.FAILED_METADATA],n)&&(this._renderTags(t),this._renderAnnotation(t),this._makeDbkeyEditLink(t)),this._setUpBehaviors(t),t},_renderToolHelpButton:function(){var e=this.model.attributes.dataset_id,t=this.model.attributes.creating_job,n=this,r=function(t){var r='<div id="thdiv-'+e+'" class="toolhelp">';t.name&&t.help?(r+="<strong>Tool help for "+t.name+"</strong><hr/>",r+=t.help):r+="<strong>Tool help is unavailable for this dataset.</strong><hr/>",r+="</div>",n.$el.find(".details").append(i.parseHTML(r))},a=function(e){i.ajax({url:Galaxy.root+"api/tools/"+e.tool_id+"/build"}).done(function(e){r(e)}).fail(function(){r({})})};return null===Galaxy.user.id?null:(0,p.default)({title:(0,v.default)("Tool Help"),classes:"icon-btn",href:"#",faIcon:"fa-question",onclick:function(){n.$el.find(".toolhelp").length>0?n.$el.find(".toolhelp").toggle():i.ajax({url:Galaxy.root+"api/jobs/"+t}).done(function(e){a(e)}).fail(function(){console.log('Failed at recovering job information from the  Galaxy API for job id "'+t+'".')})}})},_renderSecondaryActions:function(){var e=y.prototype._renderSecondaryActions.call(this);switch(this.model.get("state")){case o.default.UPLOAD:case o.default.NOT_VIEWABLE:return e;case o.default.ERROR:return e.unshift(this._renderErrButton()),e.concat([this._renderRerunButton(),this._renderToolHelpButton()]);case o.default.OK:case o.default.FAILED_METADATA:return e.concat([this._renderRerunButton(),this._renderVisualizationsButton(),this._renderToolHelpButton()])}return e.concat([this._renderRerunButton(),this._renderToolHelpButton()])},_renderErrButton:function(){var e=this;return(0,p.default)({title:(0,v.default)("View or report this error"),href:Galaxy.root+"datasets/error?dataset_id="+this.model.attributes.id,classes:"report-error-btn",faIcon:"fa-bug",onclick:function(t){Galaxy.router&&(t.preventDefault(),Galaxy.router.push("datasets/error",{dataset_id:e.model.attributes.id}))}})},_renderRerunButton:function(){var e=this.model.get("creating_job");if(this.model.get("rerunnable"))return(0,p.default)({title:(0,v.default)("Run this job again"),href:this.model.urls.rerun,classes:"rerun-btn",target:this.linkTarget,faIcon:"fa-refresh",onclick:function(t){Galaxy.router&&(t.preventDefault(),Galaxy.router.push("/",{job_id:e}))}})},_renderVisualizationsButton:function(){var t=this.model.get("visualizations");if(this.model.isDeletedOrPurged()||!this.hasUser||!this.model.hasData()||e.isEmpty(t))return null;if(!e.isObject(t[0]))return this.warn("Visualizations have been switched off"),null;var n=i(this.templates.visualizations(t,this));return n.find('[target="galaxy_main"]').attr("target",this.linkTarget),this._addScratchBookFn(n.find(".visualization-link").addBack(".visualization-link")),n},_addScratchBookFn:function(e){e.click(function(e){Galaxy.frame&&Galaxy.frame.active&&(Galaxy.frame.add({title:(0,v.default)("Visualization"),url:i(this).attr("href")}),e.preventDefault(),e.stopPropagation())})},_renderTags:function(e){if(this.hasUser){var t=this;this.tagsEditor=new d.default.TagsEditor({model:this.model,el:e.find(".tags-display"),onshowFirstTime:function(){this.render()},onshow:function(){t.tagsEditorShown=!0},onhide:function(){t.tagsEditorShown=!1},$activator:(0,p.default)({title:(0,v.default)("Edit dataset tags"),classes:"tag-btn",faIcon:"fa-tags"}).appendTo(e.find(".actions .right"))}),this.tagsEditorShown&&this.tagsEditor.toggle(!0)}},_renderAnnotation:function(e){if(this.hasUser){var t=this;this.annotationEditor=new h.default.AnnotationEditor({model:this.model,el:e.find(".annotation-display"),onshowFirstTime:function(){this.render()},onshow:function(){t.annotationEditorShown=!0},onhide:function(){t.annotationEditorShown=!1},$activator:(0,p.default)({title:(0,v.default)("Edit dataset annotation"),classes:"annotate-btn",faIcon:"fa-comment"}).appendTo(e.find(".actions .right"))}),this.annotationEditorShown&&this.annotationEditor.toggle(!0)}},_makeDbkeyEditLink:function(e){if("?"===this.model.get("metadata_dbkey")&&!this.model.isDeletedOrPurged()){var t=i('<a class="value">?</a>').attr("href",this.model.urls.edit).attr("target","_top");e.find(".dbkey .value").replaceWith(t)}},events:e.extend(e.clone(y.prototype.events),{"click .undelete-link":"_clickUndeleteLink","click .purge-link":"_clickPurgeLink","click .edit-btn":function(e){this.trigger("edit",this,e)},"click .delete-btn":function(e){this.trigger("delete",this,e)},"click .rerun-btn":function(e){this.trigger("rerun",this,e)},"click .report-err-btn":function(e){this.trigger("report-err",this,e)},"click .visualization-btn":function(e){this.trigger("visualize",this,e)},"click .dbkey a":function(e){this.trigger("edit",this,e)}}),_clickUndeleteLink:function(e){return this.model.undelete(),!1},_clickPurgeLink:function(e){return confirm((0,v.default)("This will permanently remove the data in your dataset. Are you sure?"))&&this.model.purge(),!1},toString:function(){return"HDAEditView("+(this.model?""+this.model:"(no model)")+")"}});b.prototype.templates=function(){var t=e.extend({},y.prototype.templates.warnings,{failed_metadata:m.default.wrapTemplate(['<% if( dataset.state === "failed_metadata" ){ %>','<div class="failed_metadata-warning warningmessagesmall">',(0,v.default)("An error occurred setting the metadata for this dataset"),'<br /><a href="<%- dataset.urls.edit %>" target="_top">',(0,v.default)("Set it manually or retry auto-detection"),"</a>","</div>","<% } %>"],"dataset"),deleted:m.default.wrapTemplate(["<% if( dataset.deleted && !dataset.purged ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,v.default)("This dataset has been deleted"),'<br /><a class="undelete-link" href="javascript:void(0);">',(0,v.default)("Undelete it"),"</a>","<% if( view.purgeAllowed ){ %>",'<br /><a class="purge-link" href="javascript:void(0);">',(0,v.default)("Permanently remove it from disk"),"</a>","<% } %>","</div>","<% } %>"],"dataset")}),n=m.default.wrapTemplate(["<% if( visualizations.length === 1 ){ %>",'<a class="visualization-link icon-btn" href="<%- visualizations[0].href %>"',' target="<%- visualizations[0].target %>" title="',(0,v.default)("Visualize in"),' <%- visualizations[0].html %>">','<span class="fa fa-bar-chart-o"></span>',"</a>","<% } else { %>",'<div class="visualizations-dropdown dropdown icon-btn">','<a data-toggle="dropdown" title="',(0,v.default)("Visualize"),'">','<span class="fa fa-bar-chart-o"></span>',"</a>",'<ul class="dropdown-menu" role="menu">',"<% _.each( visualizations, function( visualization ){ %>",'<li><a class="visualization-link" href="<%- visualization.href %>"',' target="<%- visualization.target %>">',"<%- visualization.html %>","</a></li>","<% }); %>","</ul>","</div>","<% } %>"],"visualizations");return e.extend({},y.prototype.templates,{warnings:t,visualizations:n})}(),t.default={DatasetListItemEdit:b}}).call(t,n(1),n(0))},function(e,t,n){"use strict";(function(e,i){function r(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=n(4),o=r(a),s=n(3),l=r(s);n(15);var c=e.View.extend(o.default.LoggableMixin).extend(o.default.HiddenUntilActivatedViewMixin).extend({tagName:"div",className:"annotation-display",initialize:function(e){e=e||{},this.tooltipConfig=e.tooltipConfig||{placement:"bottom"},this.listenTo(this.model,"change:annotation",function(){this.render()}),this.hiddenUntilActivated(e.$activator,e)},render:function(){var e=this;return this.$el.html(this._template()),this.$annotation().make_text_editable({use_textarea:!0,on_finish:function(t){e.$annotation().text(t),e.model.save({annotation:t},{silent:!0}).fail(function(){e.$annotation().text(e.model.previous("annotation"))})}}),this},_template:function(){var e=this.model.get("annotation");return['<label class="prompt">',(0,l.default)("Annotation"),"</label>",'<div class="annotation">',i.escape(e),"</div>"].join("")},$annotation:function(){return this.$el.find(".annotation")},remove:function(){this.$annotation.off(),this.stopListening(this.model),e.View.prototype.remove.call(this)},toString:function(){return["AnnotationEditor(",""+this.model,")"].join("")}});t.default={AnnotationEditor:c}}).call(t,n(2),n(1))},,,,,,,,,function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var i=n(2),r=function(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}(i),a=n(31),o=function(e){return e&&e.__esModule?e:{default:e}}(a),s=["new","queued","running"],l=["error","deleted"],c=r.Model.extend({url:function(){return Galaxy.root+"api/histories/"+this.attributes.history_id+"/contents/dataset_collections/"+this.attributes.collection_id+"/jobs_summary"},hasDetails:function(){return this.has("populated_state")},new:function(){return!this.hasDetails()||"new"==this.get("populated_state")},errored:function(){return"error"===this.get("populated_state")||this.anyWithStates(l)},states:function(){return this.get("states")||{}},anyWithState:function(e){return(this.states()[e]||0)>0},anyWithStates:function(e){var t=this.states();for(var n in e)if((t[e[n]]||0)>0)return!0;return!1},numWithStates:function(e){var t=this.states(),n=0;for(var i in e)n+=t[e[i]]||0;return n},numInError:function(){return this.numWithStates(l)},running:function(){return this.anyWithState("running")},terminal:function(){return!this.new()&&!this.anyWithStates(s)},jobCount:function(){var e=this.states(),t=0;for(var n in e)t+=e[n];return t},toString:function(){return"JobStatesSummary(id="+this.get("id")+")"}}),d=r.Collection.extend({model:c,initialize:function(){this.updateTimeoutId=null,this.active=!0},url:function(){var e=this.models.filter(function(e){return!e.terminal()}),t=e.map(function(e){return e.get("id")}).join(","),n=e.map(function(e){return e.get("model")}).join(",");return Galaxy.root+"api/histories/"+this.historyId+"/jobs_summary?ids="+t+"&types="+n},monitor:function(){var e=this;if(this.clearUpdateTimeout(),this.active){var t=function(){e.updateTimeoutId=setTimeout(function(){e.monitor()},2e3)},n=this.models.filter(function(e){return!e.terminal()});if(n.length,!1){var i=n.map(function(e){return function(){return e.fetch()}});return new o.default.AjaxQueue(i).done(t)}n.length>0?this.fetch({remove:!1}).done(t):t()}},clearUpdateTimeout:function(){this.updateTimeoutId&&(clearTimeout(this.updateTimeoutId),this.updateTimeoutId=null)},toString:function(){return"JobStatesSummaryCollection()"}});t.default={JobStatesSummary:c,JobStatesSummaryCollection:d,FETCH_STATE_ON_ADD:!1}},function(e,t,n){"use strict";(function(e,i,r){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=n(57),s=a(o),l=n(16),c=(a(l),n(8)),d=(a(c),n(37)),u=a(d),h=n(72),f=a(h),p=n(94),g=a(p),m=n(21),_=a(m),v=n(61),y=a(v),b=n(35),w=a(b),x=n(97),k=a(x),M=n(98),C=a(M),S=n(10),T=a(S),E=n(47),j=(a(E),n(4)),A=a(j),L=n(3),N=a(L);n(15);var I=s.default.HistoryView,D=I.extend({HDAViewClass:f.default.HDAListItemEdit,HDCAViewClass:g.default.HDCAListItemEdit,initialize:function(e){e=e||{},I.prototype.initialize.call(this,e),this.tagsEditor=null,this.dragItems=!0,this.annotationEditor=null,this.purgeAllowed=e.purgeAllowed||!1,this.annotationEditorShown=e.annotationEditorShown||!1,this.tagsEditorShown=e.tagsEditorShown||!1},_setUpListeners:function(){return I.prototype._setUpListeners.call(this),this.on({"droptarget:drop":function(e,t){this.dataDropped(t),this.dropTargetOff()},"view:attached view:removed":function(){this._renderCounts()},"search:loading-progress":this._renderSearchProgress,"search:searching":this._renderSearchFindings})},_setUpModelListeners:function(){return I.prototype._setUpModelListeners.call(this),this.listenTo(this.model,"change:size",this.updateHistoryDiskSize),this},_setUpCollectionListeners:function(){return I.prototype._setUpCollectionListeners.call(this),this.listenTo(this.collection,{"change:deleted":this._handleItemDeletedChange,"change:visible":this._handleItemVisibleChange,"change:purged":function(e){this.model.fetch()},"fetching-deleted":function(e){this.$("> .controls .deleted-count").html("<i>"+(0,N.default)("loading...")+"</i>")},"fetching-hidden":function(e){this.$("> .controls .hidden-count").html("<i>"+(0,N.default)("loading...")+"</i>")},"fetching-deleted-done fetching-hidden-done":this._renderCounts}),this},_buildNewRender:function(){var e=I.prototype._buildNewRender.call(this);return this.model?(Galaxy&&Galaxy.user&&Galaxy.user.id&&Galaxy.user.id===this.model.get("user_id")&&(this._renderTags(e),this._renderAnnotation(e)),e):e},updateHistoryDiskSize:function(){this.$(".history-size").text(this.model.get("nice_size"))},renderItems:function(e){var t=I.prototype.renderItems.call(this,e);return this.searchFor?this._renderSearchFindings(e):this._renderCounts(e),t},_renderCounts:function(t){t=t instanceof e?t:this.$el;var n=this.templates.counts(this.model.toJSON(),this);return t.find("> .controls .subtitle").html(n)},_renderTags:function(e){var t=this;this.tagsEditor=new _.default.TagsEditor({model:this.model,el:e.find(".controls .tags-display"),onshowFirstTime:function(){this.render()},onshow:function(){t.toggleHDATagEditors(!0,t.fxSpeed)},onhide:function(){t.toggleHDATagEditors(!1,t.fxSpeed)},$activator:(0,T.default)({title:(0,N.default)("Edit history tags"),classes:"history-tag-btn",faIcon:"fa-tags"}).appendTo(e.find(".controls .actions"))})},_renderAnnotation:function(e){var t=this;this.annotationEditor=new y.default.AnnotationEditor({model:this.model,el:e.find(".controls .annotation-display"),onshowFirstTime:function(){this.render()},onshow:function(){t.toggleHDAAnnotationEditors(!0,t.fxSpeed)},onhide:function(){t.toggleHDAAnnotationEditors(!1,t.fxSpeed)},$activator:(0,T.default)({title:(0,N.default)("Edit history annotation"),classes:"history-annotate-btn",faIcon:"fa-comment"}).appendTo(e.find(".controls .actions"))})},_setUpBehaviors:function(e){if(e=e||this.$el,I.prototype._setUpBehaviors.call(this,e),this.model&&Galaxy.user&&!Galaxy.user.isAnonymous()&&Galaxy.user.id===this.model.get("user_id")){var t=this;e.find("> .controls .name").attr("title",(0,N.default)("Click to rename history")).tooltip({placement:"bottom"}).make_text_editable({on_finish:function(e){var n=t.model.get("name");e&&e!==n?(t.$el.find("> .controls .name").text(e),t.model.save({name:e}).fail(function(){t.$el.find("> .controls .name").text(t.model.previous("name"))})):t.$el.find("> .controls .name").text(n)}})}},multiselectActions:function(){var e=this,t=[{html:(0,N.default)("Hide datasets"),func:function(){var t=u.default.HistoryDatasetAssociation.prototype.hide;e.getSelectedModels().ajaxQueue(t)}},{html:(0,N.default)("Unhide datasets"),func:function(){var t=u.default.HistoryDatasetAssociation.prototype.unhide;e.getSelectedModels().ajaxQueue(t)}},{html:(0,N.default)("Delete datasets"),func:function(){var t=u.default.HistoryDatasetAssociation.prototype.delete;e.getSelectedModels().ajaxQueue(t)}},{html:(0,N.default)("Undelete datasets"),func:function(){var t=u.default.HistoryDatasetAssociation.prototype.undelete;e.getSelectedModels().ajaxQueue(t)}}];return e.purgeAllowed&&t.push({html:(0,N.default)("Permanently delete datasets"),func:function(){if(confirm((0,N.default)("This will permanently remove the data in your datasets. Are you sure?"))){var t=u.default.HistoryDatasetAssociation.prototype.purge;e.getSelectedModels().ajaxQueue(t)}}}),t=t.concat(e._collectionActions())},_collectionActions:function(){var e=this;return[{html:(0,N.default)("Build Dataset List"),func:function(){e.buildCollection("list")}},{html:(0,N.default)("Build Dataset Pair"),func:function(){e.buildCollection("paired")}},{html:(0,N.default)("Build List of Dataset Pairs"),func:function(){e.buildCollection("list:paired")}}]},buildCollection:function(e,t,n){var i,r=this,t=t||r.getSelectedModels(),n=n||!1;"list"==e?i=w.default.createListCollection:"paired"==e?i=k.default.createPairCollection:"list:paired"==e?i=C.default.createListOfPairsCollection:console.warn("Unknown collectionType encountered "+e),i(t,n).done(function(){r.model.refresh()})},_getItemViewOptions:function(e){var t=I.prototype._getItemViewOptions.call(this,e);return i.extend(t,{purgeAllowed:this.purgeAllowed,tagsEditorShown:this.tagsEditor&&!this.tagsEditor.hidden,annotationEditorShown:this.annotationEditor&&!this.annotationEditor.hidden}),t},_handleItemDeletedChange:function(e){e.get("deleted")?this._handleItemDeletion(e):this._handleItemUndeletion(e),this._renderCounts()},_handleItemDeletion:function(e){var t=this.model.get("contents_active");t.deleted+=1,t.active-=1,this.model.contents.includeDeleted||this.removeItemView(e),this.model.set("contents_active",t)},_handleItemUndeletion:function(e){var t=this.model.get("contents_active");t.deleted-=1,this.model.contents.includeDeleted||(t.active-=1),this.model.set("contents_active",t)},_handleItemVisibleChange:function(e){e.hidden()?this._handleItemHidden(e):this._handleItemUnhidden(e),this._renderCounts()},_handleItemHidden:function(e){var t=this.model.get("contents_active");t.hidden+=1,t.active-=1,this.model.contents.includeHidden||this.removeItemView(e),this.model.set("contents_active",t)},_handleItemUnhidden:function(e){var t=this.model.get("contents_active");t.hidden-=1,this.model.contents.includeHidden||(t.active-=1),this.model.set("contents_active",t)},toggleHDATagEditors:function(e,t){i.each(this.views,function(n){n.tagsEditor&&n.tagsEditor.toggle(e,t)})},toggleHDAAnnotationEditors:function(e,t){i.each(this.views,function(n){n.annotationEditor&&n.annotationEditor.toggle(e,t)})},events:i.extend(i.clone(I.prototype.events),{"click .show-selectors-btn":"toggleSelectors","click .toggle-deleted-link":function(e){this.toggleShowDeleted()},"click .toggle-hidden-link":function(e){this.toggleShowHidden()}}),_renderSearchProgress:function(e,t){var n=e+t;return this.$("> .controls .subtitle").html(["<i>",(0,N.default)("Searching "),n,"/",this.model.contentsShown(),"</i>"].join(""))},_renderSearchFindings:function(t){t=t instanceof e?t:this.$el;var n=this.templates.found(this.model.toJSON(),this);return t.find("> .controls .subtitle").html(n),this},dropTargetOn:function(){if(this.dropTarget)return this;this.dropTarget=!0;var e={dragenter:i.bind(this.dragenter,this),dragover:i.bind(this.dragover,this),dragleave:i.bind(this.dragleave,this),drop:i.bind(this.drop,this)},t=this._renderDropTarget();this.$list().before([this._renderDropTargetHelp(),t]);for(var n in e)e.hasOwnProperty(n)&&t.on(n,e[n]);return this},_renderDropTarget:function(){return this.$(".history-drop-target").remove(),r("<div/>").addClass("history-drop-target")},_renderDropTargetHelp:function(){return this.$(".history-drop-target-help").remove(),r("<div/>").addClass("history-drop-target-help").text((0,N.default)("Drag datasets here to copy them to the current history"))},dropTargetOff:function(){if(!this.dropTarget)return this;this.dropTarget=!1;var e=this.$(".history-drop-target").get(0);for(var t in this._dropHandlers)this._dropHandlers.hasOwnProperty(t)&&e.off(t,this._dropHandlers[t]);return this.$(".history-drop-target").remove(),this.$(".history-drop-target-help").remove(),this},dropTargetToggle:function(){return this.dropTarget?this.dropTargetOff():this.dropTargetOn(),this},dragenter:function(e){e.preventDefault(),e.stopPropagation(),this.$(".history-drop-target").css("border","2px solid black")},dragover:function(e){e.preventDefault(),e.stopPropagation()},dragleave:function(e){e.preventDefault(),e.stopPropagation(),this.$(".history-drop-target").css("border","1px dashed black")},drop:function(e){e.preventDefault();var t=this,n=e.originalEvent.dataTransfer,i=n.getData("text");n.dropEffect="move";try{i=JSON.parse(i)}catch(e){t.warn("error parsing JSON from drop:",i)}return t.trigger("droptarget:drop",e,i,t),!1},dataDropped:function(t){var n=this;return i.isObject(t)&&"HistoryDatasetAssociation"===t.model_class&&t.id?0!==n.contents.currentPage?n.contents.fetchPage(0).then(function(){return n.model.contents.copy(t.id)}):n.model.contents.copy(t.id):e.when()},toString:function(){return"HistoryViewEdit("+(this.model?this.model.get("name"):"")+")"}});D.prototype.templates=function(){var e=A.default.wrapTemplate(["<% var shown = Math.max( view.views.length, history.contents_active.active ) %>","<% if( shown ){ %>",'<span class="shown-count">',"<%- shown %> ",(0,N.default)("shown"),"</span>","<% } %>","<% if( history.contents_active.deleted ){ %>",'<span class="deleted-count">',"<% if( view.model.contents.includeDeleted ){ %>",'<a class="toggle-deleted-link" href="javascript:void(0);">',(0,N.default)("hide deleted"),"</a>","<% } else { %>","<%- history.contents_active.deleted %> ",'<a class="toggle-deleted-link" href="javascript:void(0);">',(0,N.default)("deleted"),"</a>","<% } %>","</span>","<% } %>","<% if( history.contents_active.hidden 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%>","</ol>",'<div class="alert alert-warning">This is an expired version of the library dataset: <%= _.escape(item.get("name")) %></div>','<div class="dataset_table">','<table class="grid table table-striped table-condensed">',"<tr>",'<th scope="row" id="id_row" data-id="<%= _.escape(ldda.id) %>">Name</th>','<td><%= _.escape(ldda.get("name")) %></td>',"</tr>",'<% if (ldda.get("file_ext")) { %>',"<tr>",'<th scope="row">Data type</th>','<td><%= _.escape(ldda.get("file_ext")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("genome_build")) { %>',"<tr>",'<th scope="row">Genome build</th>','<td><%= _.escape(ldda.get("genome_build")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("file_size")) { %>',"<tr>",'<th scope="row">Size</th>','<td><%= _.escape(ldda.get("file_size")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("date_uploaded")) { %>',"<tr>",'<th scope="row">Date uploaded (UTC)</th>','<td><%= _.escape(ldda.get("date_uploaded")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("uploaded_by")) { %>',"<tr>",'<th scope="row">Uploaded by</th>','<td><%= _.escape(ldda.get("uploaded_by")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("metadata_data_lines")) { %>',"<tr>",'<th scope="row">Data Lines</th>','<td scope="row"><%= _.escape(ldda.get("metadata_data_lines")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("metadata_comment_lines")) { %>',"<tr>",'<th scope="row">Comment Lines</th>','<td scope="row"><%= _.escape(ldda.get("metadata_comment_lines")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("metadata_columns")) { %>',"<tr>",'<th scope="row">Number of Columns</th>','<td scope="row"><%= _.escape(ldda.get("metadata_columns")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("metadata_column_types")) { %>',"<tr>",'<th scope="row">Column Types</th>','<td scope="row"><%= _.escape(ldda.get("metadata_column_types")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("message")) { %>',"<tr>",'<th scope="row">Message</th>','<td scope="row"><%= _.escape(ldda.get("message")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("misc_blurb")) { %>',"<tr>",'<th scope="row">Miscellaneous blurb</th>','<td scope="row"><%= _.escape(ldda.get("misc_blurb")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("misc_info")) { %>',"<tr>",'<th scope="row">Miscellaneous information</th>','<td scope="row"><%= _.escape(ldda.get("misc_info")) %></td>',"</tr>","<% } %>",'<% if (item.get("tags")) { %>',"<tr>",'<th scope="row">Tags</th>','<td scope="row"><%= _.escape(item.get("tags")) %></td>',"</tr>","<% } %>","</table>","<div>",'<pre class="peek">',"</pre>","</div>","</div>","</div>"].join(""))},templateModifyDataset:function(){return i.template(['<div class="library_style_container">','<div id="library_toolbar">','<button data-toggle="tooltip" data-placement="top" title="Cancel modifications" class="btn btn-default toolbtn_cancel_modifications primary-button toolbar-item" type="button">','<span class="fa fa-times"></span>',"&nbsp;Cancel","</button>",'<button data-toggle="tooltip" data-placement="top" title="Save modifications" class="btn btn-default toolbtn_save_modifications primary-button toolbar-item" type="button">','<span class="fa fa-floppy-o"></span>',"&nbsp;Save","</button>","</div>",'<ol class="breadcrumb">','<li><a title="Return to the list of libraries" href="#">Libraries</a></li>','<% _.each(item.get("full_path"), function(path_item) { %>',"<% if (path_item[0] != item.id) { %>",'<li><a title="Return to this folder" href="#/folders/<%- path_item[0] %>"><%- path_item[1] %></a> </li> ',"<% } else { %>",'<li class="active"><span title="You are here"><%- path_item[1] %></span></li>',"<% } %>","<% }); 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i=this,r=this.$(".footer").empty().html(this.templates.footer());return e.each(this.footerSettings,function(e,t){i.$(t).prop("checked",i[e])}),"function"==typeof this.oncancel&&this.$(".cancel-create.btn").show(),r},_creatorTemplates:{main:e.template(['<div class="header flex-row no-flex"></div>','<div class="middle flex-row flex-row-container"></div>','<div class="footer flex-row no-flex"></div>'].join(""))}};t.default={CollectionCreatorMixin:n}}).call(t,n(1))},function(e,t,n){"use strict";function i(e,t){var n=/(-?[0-9\.]+)/g,i=e.toString().toLowerCase()||"",r=t.toString().toLowerCase()||"",a=String.fromCharCode(0),o=i.replace(n,a+"$1"+a).split(a),s=r.replace(n,a+"$1"+a).split(a),l=new Date(i).getTime(),c=l?new Date(r).getTime():null;if(c){if(l<c)return-1;if(l>c)return 1}for(var d,u,h=0,f=Math.max(o.length,s.length);h<f;h++){if(d=parseFloat(o[h])||o[h],u=parseFloat(s[h])||s[h],d<u)return-1;if(d>u)return 1}return 0}Object.defineProperty(t,"__esModule",{value:!0}),t.default=i},function(e,t,n){"use strict";var i=n(0),r=function(e){return e&&e.__esModule?e:{default:e}}(i),a=r.default;r.default.fn.extend({hoverhighlight:function(e,t){return e=e||"body",this.length?(a(this).each(function(){var n=a(this),i=n.data("target");i&&n.mouseover(function(n){a(i,e).css({background:t})}).mouseout(function(e){a(i).css({background:""})})}),this):this}})},function(e,t,n){"use strict";(function(e,i,r){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=n(9),s=a(o),l=n(36),c=a(l),d=n(3),u=a(d),h={defaultName:e.template("Copy of '<%- name %>'"),title:e.template((0,u.default)("Copying history")+' "<%- name %>"'),submitLabel:(0,u.default)("Copy"),errorMessage:(0,u.default)("History could not be copied."),progressive:(0,u.default)("Copying history"),activeLabel:(0,u.default)("Copy only the active, non-deleted datasets"),allLabel:(0,u.default)("Copy all datasets including deleted ones"),anonWarning:(0,u.default)("As an anonymous user, unless you login or register, you will lose your current history ")+(0,u.default)("after copying this history. "),_template:e.template(["<% if( isAnon ){ %>",'<div class="warningmessage">',"<%- anonWarning %>",(0,u.default)("You can"),' <a href="/user/login">',(0,u.default)("login here"),"</a> ",(0,u.default)("or")," ",' <a href="/user/create">',(0,u.default)("register here"),"</a>.","</div>","<% } %>","<form>",'<label for="copy-modal-title">',(0,u.default)("Enter a title for the new history"),":","</label><br />",'<input id="copy-modal-title" class="form-control" style="width: 100%" value="<%= name %>" />','<p class="invalid-title bg-danger" style="color: red; margin: 8px 0px 8px 0px; display: none">',(0,u.default)("Please enter a valid history title"),"</p>","<% if( allowAll ){ %>","<br />","<p>",(0,u.default)("Choose which datasets from the original history to include:"),"</p>",'<input name="copy-what" type="radio" id="copy-non-deleted" value="copy-non-deleted" ','<% if( copyWhat === "copy-non-deleted" ){ print( "checked" ); } %>/>','<label for="copy-non-deleted"> <%- activeLabel %></label>',"<br />",'<input name="copy-what" type="radio" id="copy-all" value="copy-all" ','<% if( copyWhat === "copy-all" ){ print( "checked" ); } %>/>','<label for="copy-all"> <%- allLabel %></label>',"<% } %>","</form>"].join("")),_showAjaxIndicator:function(){var e='<p><span class="fa fa-spinner fa-spin"></span> '+this.progressive+"...</p>";this.modal.$(".modal-body").empty().append(e).css({"margin-top":"8px"})},dialog:function(t,n,a){function o(){var e=t.$("#copy-modal-title").val();if(!e)return void t.$(".invalid-title").show();var i="copy-all"===t.$('input[name="copy-what"]:checked').val();t.$("button").prop("disabled",!0),s._showAjaxIndicator(),n.copy(!0,e,i).done(function(e){l.resolve(e)}).fail(function(t,r,a){var o={name:e,copyAllDatasets:i};c.default.ajaxErrorModal(n,t,o,s.errorMessage),l.rejectWith(l,arguments)}).done(function(){g&&t.hide()})}a=a||{};var s=this,l=i.Deferred(),d=a.nameFn||this.defaultName,h=d({name:n.get("name")}),f=a.allDatasets?"copy-all":"copy-non-deleted",p=!!e.isUndefined(a.allowAll)||a.allowAll,g=!!e.isUndefined(a.autoClose)||a.autoClose;this.modal=t;var m=a.closing_callback;return t.show(e.extend(a,{title:this.title({name:n.get("name")}),body:r(s._template({name:h,isAnon:Galaxy.user.isAnonymous(),allowAll:p,copyWhat:f,activeLabel:this.activeLabel,allLabel:this.allLabel,anonWarning:this.anonWarning})),buttons:e.object([[(0,u.default)("Cancel"),function(){t.hide()}],[this.submitLabel,o]]),height:"auto",closing_events:!0,closing_callback:function(e){e&&l.reject({cancelled:!0}),m&&m(e)}})),t.$("#copy-modal-title").focus().select(),t.$("#copy-modal-title").on("keydown",function(e){13===e.keyCode&&(e.preventDefault(),o())}),l}},f=e.extend({},h,{defaultName:e.template("imported: <%- name %>"),title:e.template((0,u.default)("Importing history")+' "<%- name %>"'),submitLabel:(0,u.default)("Import"),errorMessage:(0,u.default)("History could not be imported."),progressive:(0,u.default)("Importing history"),activeLabel:(0,u.default)("Import only the active, non-deleted datasets"),allLabel:(0,u.default)("Import all datasets including deleted ones"),anonWarning:(0,u.default)("As an anonymous user, unless you login or register, you will lose your current history ")+(0,u.default)("after importing this history. ")}),p=function(e,t){t=t||{};var n=window.parent.Galaxy.modal||new s.default.View({});return t.useImport?f.dialog(n,e,t):h.dialog(n,e,t)};t.default=p}).call(t,n(1),n(0),n(0))},function(e,t,n){"use strict";(function(e){function i(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}Object.defineProperty(t,"__esModule",{value:!0});var r=n(1),a=i(r),o=n(2),s=i(o),l=n(4),c=function(e){return e&&e.__esModule?e:{default:e}}(l),d=s.Collection.extend({initialize:function(e,t){s.Collection.prototype.initialize.call(this,e,t),this.setOrder(t.order||this.order,{silent:!0})},_setUpListeners:function(){return this.on({"changed-order":this.sort})},fetch:function(e){return e=this._buildFetchOptions(e),Galaxy.debug("fetch options:",e),s.Collection.prototype.fetch.call(this,e)},_buildFetchOptions:function(e){e=a.clone(e)||{};var t=this;e.traditional=!0,e.data=e.data||t._buildFetchData(e),Galaxy.debug("data:",e.data);var n=this._buildFetchFilters(e);return Galaxy.debug("filters:",n),a.isEmpty(n)||a.extend(e.data,this._fetchFiltersToAjaxData(n)),Galaxy.debug("data:",e.data),e},_buildFetchData:function(e){var t={};return this.order&&(t.order=this.order),a.defaults(a.pick(e,this._fetchParams),t)},_fetchParams:["order","limit","offset","view","keys"],_buildFetchFilters:function(e){return a.clone(e.filters||{})},_fetchFiltersToAjaxData:function(e){var t={q:[],qv:[]};return a.each(e,function(e,n){void 0!==e&&""!==e&&(!0===e&&(e="True"),!1===e&&(e="False"),null===e&&(e="None"),t.q.push(n),t.qv.push(e))}),t},reset:function(e,t){return this.allFetched=!1,s.Collection.prototype.reset.call(this,e,t)},order:null,comparators:{update_time:c.default.buildComparator("update_time",{ascending:!1}),"update_time-asc":c.default.buildComparator("update_time",{ascending:!0}),create_time:c.default.buildComparator("create_time",{ascending:!1}),"create_time-asc":c.default.buildComparator("create_time",{ascending:!0})},setOrder:function(e,t){t=t||{};var n=this,i=n.comparators[e];if(a.isUndefined(i))throw new Error("unknown order: "+e);if(i!==n.comparator)return n.order=e,n.comparator=i,t.silent||n.trigger("changed-order",t),n}}),u=d.extend({limitPerPage:500,initialize:function(e,t){d.prototype.initialize.call(this,e,t),this.currentPage=t.currentPage||0},getTotalItemCount:function(){return this.length},shouldPaginate:function(){return this.getTotalItemCount()>=this.limitPerPage},getLastPage:function(){return Math.floor(this.getTotalItemCount()/this.limitPerPage)},getPageCount:function(){return this.getLastPage()+1},getPageLimitOffset:function(e){return e=this.constrainPageNum(e),{limit:this.limitPerPage,offset:e*this.limitPerPage}},constrainPageNum:function(e){return Math.max(0,Math.min(e,this.getLastPage()))},fetchPage:function(e,t){var n=this;return e=n.constrainPageNum(e),n.currentPage=e,t=a.defaults(t||{},n.getPageLimitOffset(e)),n.trigger("fetching-more"),n.fetch(t).always(function(){n.trigger("fetching-more-done")})},fetchCurrentPage:function(e){return this.fetchPage(this.currentPage,e)},fetchPrevPage:function(e){return this.fetchPage(this.currentPage-1,e)},fetchNextPage:function(e){return this.fetchPage(this.currentPage+1,e)}}),h=d.extend({limitOnFirstFetch:null,limitPerFetch:100,initialize:function(e,t){d.prototype.initialize.call(this,e,t),this.limitOnFirstFetch=t.limitOnFirstFetch||this.limitOnFirstFetch,this.limitPerFetch=t.limitPerFetch||this.limitPerFetch,this.allFetched=!1,this.lastFetched=t.lastFetched||0},_buildFetchOptions:function(e){return e.remove=e.remove||!1,d.prototype._buildFetchOptions.call(this,e)},fetchFirst:function(e){return Galaxy.debug("ControlledFetchCollection.fetchFirst:",e),e=e?a.clone(e):{},this.allFetched=!1,this.lastFetched=0,this.fetchMore(a.defaults(e,{reset:!0,limit:this.limitOnFirstFetch}))},fetchMore:function(t){Galaxy.debug("ControlledFetchCollection.fetchMore:",t),t=a.clone(t||{});var n=this;if(Galaxy.debug("fetchMore, options.reset:",t.reset),!t.reset&&n.allFetched)return e.when();t.reset?t.offset=0:void 0===t.offset&&(t.offset=n.lastFetched);var i=t.limit=t.limit||n.limitPerFetch||null;return Galaxy.debug("fetchMore, limit:",i,"offset:",t.offset),n.trigger("fetching-more"),n.fetch(t).always(function(){n.trigger("fetching-more-done")}).done(function(e){var t=a.isArray(e)?e.length:0;n.lastFetched+=t,Galaxy.debug("fetchMore, lastFetched:",n.lastFetched),(!i||t<i)&&(n.allFetched=!0,n.trigger("all-fetched",this))})},fetchAll:function(e){e=e||{};var t=this;return e=a.pick(e,"silent"),e.filters={},t.fetch(e).done(function(){t.allFetched=!0,t.trigger("all-fetched",t)})}});t.default={ControlledFetchCollection:d,PaginatedCollection:u,InfinitelyScrollingCollection:h}}).call(t,n(0))},function(e,t,n){"use strict";(function(e,i){function r(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=n(38),o=r(a),s=n(30),l=r(s),c=n(16),d=r(c),u=n(31),h=(r(u),n(40)),f=r(h),p=n(41),g=r(p),m=n(66),_=(r(m),n(36)),v=r(_),y=n(10),b=r(y),w=n(4),x=r(w),k=n(3),M=r(k);n(39);var C=o.default.ModelListPanel,S=C.extend({_logNamespace:"history",HDAViewClass:f.default.HDAListItemView,HDCAViewClass:g.default.HDCAListItemView,collectionClass:d.default.HistoryContents,modelCollectionKey:"contents",tagName:"div",className:C.prototype.className+" history-panel",emptyMsg:(0,M.default)("This history is empty"),noneFoundMsg:(0,M.default)("No matching datasets found"),searchPlaceholder:(0,M.default)("search datasets"),initialize:function(e){C.prototype.initialize.call(this,e),this.linkTarget=e.linkTarget||"_blank"},_createDefaultCollection:function(){return new this.collectionClass([],{history:this.model})},freeModel:function(){return C.prototype.freeModel.call(this),this.model&&this.model.stopPolling(),this},_setUpListeners:function(){C.prototype._setUpListeners.call(this),this.on({error:function(e,t,n,i,r){this.errorHandler(e,t,n,i,r)},"views:ready view:attached view:removed":function(e){this._renderSelectButton()},"view:attached":function(e){this.scrollTo(0)}})},loadHistory:function(t,n,i){var r=this;return i=e.extend(i||{silent:!0}),this.info("loadHistory:",t,n,i),this.setModel(new l.default.History({id:t})),i.silent=!0,this.trigger("loading"),this.model.fetchWithContents(n,i).always(function(){r.render(),r.trigger("loading-done")})},refreshContents:function(e){return this.model?this.model.refresh(e):i.when()},_setUpCollectionListeners:function(){return C.prototype._setUpCollectionListeners.call(this),this.listenTo(this.collection,{"fetching-more":function(){this._toggleContentsLoadingIndicator(!0),this.$emptyMessage().hide()},"fetching-more-done":function(){this._toggleContentsLoadingIndicator(!1)}})},_showLoadingIndicator:function(t,n,r){var a=i('<div class="loading-indicator"/>');this.$el.html(a.text(t).slideDown(e.isUndefined(n)?this.fxSpeed:n))},_hideLoadingIndicator:function(t){this.$(".loading-indicator").slideUp(e.isUndefined(t)?this.fxSpeed+200:t,function(){i(this).remove()})},_buildNewRender:function(){var e=C.prototype._buildNewRender.call(this);return this._renderSelectButton(e),e},_renderSelectButton:function(e){if(e=e||this.$el,!this.multiselectActions().length)return null;if(!this.views.length)return this.hideSelectors(),e.find(".controls .actions .show-selectors-btn").remove(),null;var t=e.find(".controls .actions .show-selectors-btn");return t.length?t:(0,b.default)({title:(0,M.default)("Operations on multiple datasets"),classes:"show-selectors-btn",faIcon:"fa-check-square-o"}).prependTo(e.find(".controls .actions"))},_renderEmptyMessage:function(e){var t=this.$emptyMessage(e);return this.model.get("contents_active").active<=0?t.empty().append(this.emptyMsg).show():this.searchFor&&this.model.contents.haveSearchDetails()&&!this.views.length?t.empty().append(this.noneFoundMsg).show():(t.hide(),i())},$scrollContainer:function(e){return this.$list(e)},_toggleContentsLoadingIndicator:function(e){e?this.$list().html('<div class="contents-loading-indicator"><span class="fa fa-2x fa-spinner fa-spin"/></div>'):this.$list().find(".contents-loading-indicator").remove()},renderItems:function(e){e=e||this.$el;var t=this.$list(e);i(".tooltip").remove(),t.empty(),this.views=[];var n=this._filterCollection();return n.length?(this._renderPagination(e),this.views=this._renderSomeItems(n,t)):e.find("> .controls 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"+t)},_getItemViewOptions:function(t){var n=C.prototype._getItemViewOptions.call(this,t);return e.extend(n,{linkTarget:this.linkTarget,expanded:this.model.contents.storage.isExpanded(t.id),hasUser:this.model.ownedByCurrUser()})},_setUpItemViewListeners:function(e){var t=this;return C.prototype._setUpItemViewListeners.call(t,e),t.listenTo(e,{expanded:function(e){t.model.contents.storage.addExpanded(e.model)},collapsed:function(e){t.model.contents.storage.removeExpanded(e.model)}})},collapseAll:function(){this.model.contents.storage.clearExpanded(),C.prototype.collapseAll.call(this)},getSelectedModels:function(){var e=C.prototype.getSelectedModels.call(this);return e.historyId=this.collection.historyId,e},events:e.extend(e.clone(C.prototype.events),{"click .show-selectors-btn":"toggleSelectors","click > .controls .prev":"_clickPrevPage","click > .controls .next":"_clickNextPage","change > .controls .pages":"_changePageSelect","click .messages [class$=message]":"clearMessages"}),_clickPrevPage:function(e){this.model.stopPolling(),this.model.contents.fetchPrevPage()},_clickNextPage:function(e){this.model.stopPolling(),this.model.contents.fetchNextPage()},_changePageSelect:function(e){this.model.stopPolling();var t=i(e.currentTarget).val();this.model.contents.fetchPage(t)},toggleShowDeleted:function(e,t){e=void 0!==e?e:!this.model.contents.includeDeleted;var n=this.model.contents;return n.setIncludeDeleted(e,t),this.trigger("show-deleted",e),n.fetchCurrentPage({renderAll:!0}),e},toggleShowHidden:function(e,t,n){e=void 0!==e?e:!this.model.contents.includeHidden;var i=this.model.contents;return i.setIncludeHidden(e,n),this.trigger("show-hidden",e),i.fetchCurrentPage({renderAll:!0}),e},_firstSearch:function(e){var t=this;if(this.log("onFirstSearch",e),this.model.contents.haveSearchDetails())return void this.searchItems(e);this.$("> .controls .search-input").searchInput("toggle-loading"),this.searchFor=e;this.model.contents.progressivelyFetchDetails({silent:!0}).progress(function(e,n,i){t.renderItems(),t.trigger("search:loading-progress",n,i)}).always(function(){t.$el.find("> .controls .search-input").searchInput("toggle-loading")}).done(function(){t.searchItems(e,"force")})},clearSearch:function(e){var t=this;return this.searchFor?(this.searchFor="",this.trigger("search:clear",this),this.$("> .controls .search-query").val(""),this.model.contents.fetchCurrentPage({silent:!0}).done(function(){t.renderItems()}),this):this},errorHandler:function(t,n,i){if(!n||0!==n.status||0!==n.readyState){if(this.error(t,n,i),e.isString(t)&&e.isString(n)){var r=t,a=n;return v.default.errorModal(r,a,i)}return n&&502===n.status?v.default.badGatewayErrorModal():v.default.ajaxErrorModal(t,n,i)}},clearMessages:function(t){return(e.isUndefined(t)?this.$messages().children('[class$="message"]'):i(t.currentTarget)).fadeOut(this.fxSpeed,function(){i(this).remove()}),this},scrollToHid:function(t){return this.scrollToItem(e.first(this.viewsWhereModel({hid:t})))},ordinalIndicator:function(e){var t=""+e;switch(t.charAt(t.length-1)){case"1":return t+"st";case"2":return t+"nd";case"3":return t+"rd";default:return t+"th"}},toString:function(){return"HistoryView("+(this.model?this.model.get("name"):"")+")"}});S.prototype.templates=function(){var t=function(){return'<div>\n            <div class="controls"></div>\n            <ul class="list-items"></ul>\n            <div class="empty-message infomessagesmall"></div>\',\n        </div>'},n=x.default.wrapTemplate(['<div class="controls">','<div class="title">','<div class="name"><%- history.name %></div>',"</div>",'<div class="subtitle"></div>','<div class="history-size"><%- history.nice_size %></div>','<div class="actions"></div>','<div class="messages">',"<% if( history.deleted && history.purged ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,M.default)("This history has been purged and deleted"),"</div>","<% } else if( history.deleted ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,M.default)("This history has been deleted"),"</div>","<% } else if( history.purged ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,M.default)("This history has been purged"),"</div>","<% } %>","<% if( history.message ){ %>",'<div class="<%= history.message.level || "info" %>messagesmall">',"<%= history.message.text %>","</div>","<% } %>","</div>",'<div class="tags-display"></div>','<div class="annotation-display"></div>','<div class="search">','<div class="search-input"></div>',"</div>",'<div class="list-actions">','<div class="btn-group">','<button class="select-all btn btn-default"','data-mode="select">',(0,M.default)("All"),"</button>",'<button class="deselect-all btn btn-default"','data-mode="select">',(0,M.default)("None"),"</button>","</div>",'<div class="list-action-menu btn-group">',"</div>","</div>",'<div class="list-pagination form-inline"></div>',"</div>"],"history"),i=x.default.wrapTemplate(['<button class="prev" <%- pages.current === 1 ? "disabled" : "" %>>previous</button>','<select class="pages form-control" ','title="',(0,M.default)("Click to open and select a page. Begin typing a page number to select it"),'">',"<% _.range( 1, pages.last + 1 ).forEach( function( i ){ %>",'<option value="<%- i - 1 %>" <%- i === pages.current ? "selected" : "" %>>',"<%- view.ordinalIndicator( i ) %> of <%- pages.last %> pages","</option>","<% }); %>","</select>",'<button class="next" <%- pages.current === pages.last ? "disabled" : "" %>>next</button>'],"pages");return e.extend(e.clone(C.prototype.templates),{el:t,controls:n,pagination:i})}(),t.default={HistoryView:S}}).call(t,n(1),n(0))},function(e,t,n){"use strict";(function(e){function n(t){return'<span class="label label-info">'+e.escape(t.slice(5))+"</span>"}function i(t){var i=e.filter(e.uniq(t.tags),function(e){return 0===e.indexOf("name:")}),r=e.sortBy(i).map(n);return'\n        <div class="nametags" title="'+i.length+' nametags">\n            '+r.join("")+"\n        </div>"}Object.defineProperty(t,"__esModule",{value:!0}),t.default={nametagTemplate:i}}).call(t,n(1))},function(e,t,n){"use strict";(function(e){function i(e){return e&&e.__esModule?e:{default:e}}function r(e){var t=e.get("collection_type");return"list"==t?(0,f.default)("list"):"paired"==t?(0,f.default)("dataset pair"):"list:paired"==t?(0,f.default)("list of pairs"):(0,f.default)("nested list")}function a(e){var t=e.get("element_count"),n="a "+r(e);if(t){var i;1==t?i="with 1 item":t&&(i="with "+t+" items"),n=n+" "+(0,f.default)(i)}return n}Object.defineProperty(t,"__esModule",{value:!0});var o=n(38),s=i(o),l=n(29),c=(i(l),n(33)),d=i(c),u=n(4),h=(i(u),n(3)),f=i(h),p=s.default.ModelListPanel,g=p.extend({_logNamespace:"collections",className:p.prototype.className+" dataset-collection-panel",DatasetDCEViewClass:d.default.DatasetDCEListItemView,modelCollectionKey:"elements",initialize:function(e){p.prototype.initialize.call(this,e),this.linkTarget=e.linkTarget||"_blank",this.hasUser=e.hasUser,this.panelStack=[],this.parentName=e.parentName,this.foldoutStyle=e.foldoutStyle||"foldout",this.downloadUrl=Galaxy.root+"api/dataset_collections/"+this.model.attributes.id+"/download"},getNestedDCDCEViewClass:function(){return d.default.NestedDCDCEListItemView.extend({foldoutPanelClass:g})},_queueNewRender:function(e,t){t=void 0===t?this.fxSpeed:t;var n=this;this.handleWarning(e),n.log("_queueNewRender:",e,t),n._swapNewRender(e),n.trigger("rendered",n)},handleWarning:function(e){var t=this.views.length,n=this.model.get("element_count");if(n&&n!==t){var i=(0,f.default)("displaying only "+t+" of "+n+" items");e.find(".elements-warning").html('<div class="warningmessagesmall">'+i+"</div>")}},_filterCollection:function(){return this.model.getVisibleContents()},_getItemViewClass:function(e){switch(e.get("element_type")){case"hda":return this.DatasetDCEViewClass;case"dataset_collection":return this.getNestedDCDCEViewClass()}throw new TypeError("Unknown element type:",e.get("element_type"))},_getItemViewOptions:function(t){var n=p.prototype._getItemViewOptions.call(this,t);return e.extend(n,{linkTarget:this.linkTarget,hasUser:this.hasUser,foldoutStyle:this.foldoutStyle})},_setUpItemViewListeners:function(e){var t=this;return p.prototype._setUpItemViewListeners.call(t,e),t.listenTo(e,{"expanded:drilldown":function(e,t){this._expandDrilldownPanel(t)},"collapsed:drilldown":function(e,t){this._collapseDrilldownPanel(t)}}),this},_expandDrilldownPanel:function(e){this.panelStack.push(e),this.$("> .controls").add(this.$list()).hide(),e.parentName=this.model.get("name"),this.$el.append(e.render().$el)},_collapseDrilldownPanel:function(e){this.panelStack.pop(),this.render()},events:{"click .navigation .back":"close"},close:function(e){this.remove(),this.trigger("close")},toString:function(){return"CollectionView("+(this.model?this.model.get("name"):"")+")"}});g.prototype.templates=function(){var t=function(t,n){var i=a(n.model);return'\n        <div class="controls">\n            <div class="navigation">\n            <a class="back" href="javascript:void(0)">\n                <span class="fa fa-icon fa-angle-left"></span>\n                '+(0,f.default)("Back to ")+"\n                "+e.escape(n.parentName)+'\n            </a>\n            </div>\n            <div class="title">\n                <div class="name">'+(e.escape(t.name)||e.escape(t.element_identifier))+'</div>\n                <div class="subtitle">\n                    '+i+'\n                </div>\n            </div>\n            <div class="elements-warning">\n            </div>\n            <div class="tags-display"></div>\n            <div class="actions">\n                <a class="download-btn icon-btn" href="'+n.downloadUrl+'"\n                   title="" download="" data-original-title="Download Collection">\n                   <span class="fa fa-floppy-o"></span>\n                </a>\n            </div>\n        </div>'};return e.extend(e.clone(p.prototype.templates),{controls:t})}(),t.default={collectionTypeDescription:r,collectionDescription:a,CollectionView:g}}).call(t,n(1))},function(e,t,n){"use strict";(function(e,i){function r(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=n(8),o=r(a),s=n(17),l=r(s),c=n(22),d=r(c),u=n(61),h=r(u),f=n(10),p=r(f),g=n(4),m=r(g),_=n(3),v=r(_),y=l.default.DatasetListItemView,b=y.extend({initialize:function(e){y.prototype.initialize.call(this,e),this.hasUser=e.hasUser,this.purgeAllowed=e.purgeAllowed||!1,this.tagsEditorShown=e.tagsEditorShown||!1,this.annotationEditorShown=e.annotationEditorShown||!1},_renderPrimaryActions:function(){var e=y.prototype._renderPrimaryActions.call(this);return this.model.get("state")===o.default.NOT_VIEWABLE?e:y.prototype._renderPrimaryActions.call(this).concat([this._renderEditButton(),this._renderDeleteButton()])},_renderEditButton:function(){var t=this;if(this.model.get("state")===o.default.DISCARDED||!this.model.get("accessible"))return null;var n=this.model.get("purged"),i=this.model.get("deleted"),r={title:(0,v.default)("Edit attributes"),href:Galaxy.root+"datasets/edit?dataset_id="+this.model.attributes.id,faIcon:"fa-pencil",classes:"edit-btn",onclick:function(e){Galaxy.router&&(e.preventDefault(),Galaxy.router.push("datasets/edit",{dataset_id:t.model.attributes.id}))}};return i||n?(r.disabled=!0,n?r.title=(0,v.default)("Cannot edit attributes of datasets removed from disk"):i&&(r.title=(0,v.default)("Undelete dataset to edit attributes"))):e.contains([o.default.UPLOAD,o.default.NEW],this.model.get("state"))&&(r.disabled=!0,r.title=(0,v.default)("This dataset is not yet editable")),(0,p.default)(r)},_renderDeleteButton:function(){if(!this.model.get("accessible"))return null;var e=this,t=this.model.isDeletedOrPurged();return(0,p.default)({title:t?(0,v.default)("Dataset is already deleted"):(0,v.default)("Delete"),disabled:t,faIcon:"fa-times",classes:"delete-btn",onclick:function(){e.$el.find(".icon-btn.delete-btn").trigger("mouseout"),e.model.delete()}})},_renderDetails:function(){var t=y.prototype._renderDetails.call(this),n=this.model.get("state");return!this.model.isDeletedOrPurged()&&e.contains([o.default.OK,o.default.FAILED_METADATA],n)&&(this._renderTags(t),this._renderAnnotation(t),this._makeDbkeyEditLink(t)),this._setUpBehaviors(t),t},_renderToolHelpButton:function(){var e=this.model.attributes.dataset_id,t=this.model.attributes.creating_job,n=this,r=function(t){var r='<div id="thdiv-'+e+'" class="toolhelp">';t.name&&t.help?(r+="<strong>Tool help for "+t.name+"</strong><hr/>",r+=t.help):r+="<strong>Tool help is unavailable for this dataset.</strong><hr/>",r+="</div>",n.$el.find(".details").append(i.parseHTML(r))},a=function(e){i.ajax({url:Galaxy.root+"api/tools/"+e.tool_id+"/build"}).done(function(e){r(e)}).fail(function(){r({})})};return null===Galaxy.user.id?null:(0,p.default)({title:(0,v.default)("Tool Help"),classes:"icon-btn",href:"#",faIcon:"fa-question",onclick:function(){n.$el.find(".toolhelp").length>0?n.$el.find(".toolhelp").toggle():i.ajax({url:Galaxy.root+"api/jobs/"+t}).done(function(e){a(e)}).fail(function(){console.log('Failed at recovering job information from the  Galaxy API for job id "'+t+'".')})}})},_renderSecondaryActions:function(){var e=y.prototype._renderSecondaryActions.call(this);switch(this.model.get("state")){case o.default.UPLOAD:case o.default.NOT_VIEWABLE:return e;case o.default.ERROR:return e.unshift(this._renderErrButton()),e.concat([this._renderRerunButton(),this._renderToolHelpButton()]);case o.default.OK:case o.default.FAILED_METADATA:return e.concat([this._renderRerunButton(),this._renderVisualizationsButton(),this._renderToolHelpButton()])}return e.concat([this._renderRerunButton(),this._renderToolHelpButton()])},_renderErrButton:function(){var e=this;return(0,p.default)({title:(0,v.default)("View or report this error"),href:Galaxy.root+"datasets/error?dataset_id="+this.model.attributes.id,classes:"report-error-btn",faIcon:"fa-bug",onclick:function(t){Galaxy.router&&(t.preventDefault(),Galaxy.router.push("datasets/error",{dataset_id:e.model.attributes.id}))}})},_renderRerunButton:function(){var e=this.model.get("creating_job");if(this.model.get("rerunnable"))return(0,p.default)({title:(0,v.default)("Run this job again"),href:this.model.urls.rerun,classes:"rerun-btn",target:this.linkTarget,faIcon:"fa-refresh",onclick:function(t){Galaxy.router&&(t.preventDefault(),Galaxy.router.push("/",{job_id:e}))}})},_renderVisualizationsButton:function(){var t=this.model.get("visualizations");if(this.model.isDeletedOrPurged()||!this.hasUser||!this.model.hasData()||e.isEmpty(t))return null;if(!e.isObject(t[0]))return this.warn("Visualizations have been switched off"),null;var n=i(this.templates.visualizations(t,this));return n.find('[target="galaxy_main"]').attr("target",this.linkTarget),this._addScratchBookFn(n.find(".visualization-link").addBack(".visualization-link")),n},_addScratchBookFn:function(e){e.click(function(e){Galaxy.frame&&Galaxy.frame.active&&(Galaxy.frame.add({title:(0,v.default)("Visualization"),url:i(this).attr("href")}),e.preventDefault(),e.stopPropagation())})},_renderTags:function(e){if(this.hasUser){var t=this;this.tagsEditor=new d.default.TagsEditor({model:this.model,el:e.find(".tags-display"),onshowFirstTime:function(){this.render()},onshow:function(){t.tagsEditorShown=!0},onhide:function(){t.tagsEditorShown=!1},$activator:(0,p.default)({title:(0,v.default)("Edit dataset tags"),classes:"tag-btn",faIcon:"fa-tags"}).appendTo(e.find(".actions .right"))}),this.tagsEditorShown&&this.tagsEditor.toggle(!0)}},_renderAnnotation:function(e){if(this.hasUser){var t=this;this.annotationEditor=new h.default.AnnotationEditor({model:this.model,el:e.find(".annotation-display"),onshowFirstTime:function(){this.render()},onshow:function(){t.annotationEditorShown=!0},onhide:function(){t.annotationEditorShown=!1},$activator:(0,p.default)({title:(0,v.default)("Edit dataset annotation"),classes:"annotate-btn",faIcon:"fa-comment"}).appendTo(e.find(".actions .right"))}),this.annotationEditorShown&&this.annotationEditor.toggle(!0)}},_makeDbkeyEditLink:function(e){if("?"===this.model.get("metadata_dbkey")&&!this.model.isDeletedOrPurged()){var t=i('<a class="value">?</a>').attr("href",this.model.urls.edit).attr("target","_top");e.find(".dbkey .value").replaceWith(t)}},events:e.extend(e.clone(y.prototype.events),{"click .undelete-link":"_clickUndeleteLink","click .purge-link":"_clickPurgeLink","click .edit-btn":function(e){this.trigger("edit",this,e)},"click .delete-btn":function(e){this.trigger("delete",this,e)},"click .rerun-btn":function(e){this.trigger("rerun",this,e)},"click .report-err-btn":function(e){this.trigger("report-err",this,e)},"click .visualization-btn":function(e){this.trigger("visualize",this,e)},"click .dbkey a":function(e){this.trigger("edit",this,e)}}),_clickUndeleteLink:function(e){return this.model.undelete(),!1},_clickPurgeLink:function(e){return confirm((0,v.default)("This will permanently remove the data in your dataset. Are you sure?"))&&this.model.purge(),!1},toString:function(){return"HDAEditView("+(this.model?""+this.model:"(no model)")+")"}});b.prototype.templates=function(){var t=e.extend({},y.prototype.templates.warnings,{failed_metadata:m.default.wrapTemplate(['<% if( dataset.state === "failed_metadata" ){ %>','<div class="failed_metadata-warning warningmessagesmall">',(0,v.default)("An error occurred setting the metadata for this dataset"),'<br /><a href="<%- dataset.urls.edit %>" target="_top">',(0,v.default)("Set it manually or retry auto-detection"),"</a>","</div>","<% } %>"],"dataset"),deleted:m.default.wrapTemplate(["<% if( dataset.deleted && !dataset.purged ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,v.default)("This dataset has been deleted"),'<br /><a class="undelete-link" href="javascript:void(0);">',(0,v.default)("Undelete it"),"</a>","<% if( view.purgeAllowed ){ %>",'<br /><a class="purge-link" href="javascript:void(0);">',(0,v.default)("Permanently remove it from disk"),"</a>","<% } %>","</div>","<% } %>"],"dataset")}),n=m.default.wrapTemplate(["<% if( visualizations.length === 1 ){ %>",'<a class="visualization-link icon-btn" href="<%- visualizations[0].href %>"',' target="<%- visualizations[0].target %>" title="',(0,v.default)("Visualize in"),' <%- visualizations[0].html %>">','<span class="fa fa-bar-chart-o"></span>',"</a>","<% } else { %>",'<div class="visualizations-dropdown dropdown icon-btn">','<a data-toggle="dropdown" title="',(0,v.default)("Visualize"),'">','<span class="fa fa-bar-chart-o"></span>',"</a>",'<ul class="dropdown-menu" role="menu">',"<% _.each( visualizations, function( visualization ){ %>",'<li><a class="visualization-link" href="<%- visualization.href %>"',' target="<%- visualization.target %>">',"<%- visualization.html %>","</a></li>","<% }); %>","</ul>","</div>","<% } %>"],"visualizations");return e.extend({},y.prototype.templates,{warnings:t,visualizations:n})}(),t.default={DatasetListItemEdit:b}}).call(t,n(1),n(0))},function(e,t,n){"use strict";(function(e,i){function r(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=n(4),o=r(a),s=n(3),l=r(s);n(15);var c=e.View.extend(o.default.LoggableMixin).extend(o.default.HiddenUntilActivatedViewMixin).extend({tagName:"div",className:"annotation-display",initialize:function(e){e=e||{},this.tooltipConfig=e.tooltipConfig||{placement:"bottom"},this.listenTo(this.model,"change:annotation",function(){this.render()}),this.hiddenUntilActivated(e.$activator,e)},render:function(){var e=this;return this.$el.html(this._template()),this.$annotation().make_text_editable({use_textarea:!0,on_finish:function(t){e.$annotation().text(t),e.model.save({annotation:t},{silent:!0}).fail(function(){e.$annotation().text(e.model.previous("annotation"))})}}),this},_template:function(){var e=this.model.get("annotation");return['<label class="prompt">',(0,l.default)("Annotation"),"</label>",'<div class="annotation">',i.escape(e),"</div>"].join("")},$annotation:function(){return this.$el.find(".annotation")},remove:function(){this.$annotation.off(),this.stopListening(this.model),e.View.prototype.remove.call(this)},toString:function(){return["AnnotationEditor(",""+this.model,")"].join("")}});t.default={AnnotationEditor:c}}).call(t,n(2),n(1))},,,,,,,,,function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var i=n(2),r=function(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}(i),a=n(32),o=function(e){return e&&e.__esModule?e:{default:e}}(a),s=["new","queued","running"],l=["error","deleted"],c=r.Model.extend({url:function(){return Galaxy.root+"api/histories/"+this.attributes.history_id+"/contents/dataset_collections/"+this.attributes.collection_id+"/jobs_summary"},hasDetails:function(){return this.has("populated_state")},new:function(){return!this.hasDetails()||"new"==this.get("populated_state")},errored:function(){return"error"===this.get("populated_state")||this.anyWithStates(l)},states:function(){return this.get("states")||{}},anyWithState:function(e){return(this.states()[e]||0)>0},anyWithStates:function(e){var t=this.states();for(var n in e)if((t[e[n]]||0)>0)return!0;return!1},numWithStates:function(e){var t=this.states(),n=0;for(var i in e)n+=t[e[i]]||0;return n},numInError:function(){return this.numWithStates(l)},running:function(){return this.anyWithState("running")},terminal:function(){return!this.new()&&!this.anyWithStates(s)},jobCount:function(){var e=this.states(),t=0;for(var n in e)t+=e[n];return t},toString:function(){return"JobStatesSummary(id="+this.get("id")+")"}}),d=r.Collection.extend({model:c,initialize:function(){this.updateTimeoutId=null,this.active=!0},url:function(){var e=this.models.filter(function(e){return!e.terminal()}),t=e.map(function(e){return e.get("id")}).join(","),n=e.map(function(e){return e.get("model")}).join(",");return Galaxy.root+"api/histories/"+this.historyId+"/jobs_summary?ids="+t+"&types="+n},monitor:function(){var e=this;if(this.clearUpdateTimeout(),this.active){var t=function(){e.updateTimeoutId=setTimeout(function(){e.monitor()},2e3)},n=this.models.filter(function(e){return!e.terminal()});if(n.length,!1){var i=n.map(function(e){return function(){return e.fetch()}});return new o.default.AjaxQueue(i).done(t)}n.length>0?this.fetch({remove:!1}).done(t):t()}},clearUpdateTimeout:function(){this.updateTimeoutId&&(clearTimeout(this.updateTimeoutId),this.updateTimeoutId=null)},toString:function(){return"JobStatesSummaryCollection()"}});t.default={JobStatesSummary:c,JobStatesSummaryCollection:d,FETCH_STATE_ON_ADD:!1}},function(e,t,n){"use strict";(function(e,i,r){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=n(57),s=a(o),l=n(16),c=(a(l),n(8)),d=(a(c),n(37)),u=a(d),h=n(72),f=a(h),p=n(96),g=a(p),m=n(22),_=a(m),v=n(61),y=a(v),b=n(28),w=a(b),x=n(73),k=a(x),M=n(74),C=a(M),S=n(10),T=a(S),E=n(47),j=(a(E),n(4)),A=a(j),N=n(3),L=a(N);n(15);var I=s.default.HistoryView,D=I.extend({HDAViewClass:f.default.HDAListItemEdit,HDCAViewClass:g.default.HDCAListItemEdit,initialize:function(e){e=e||{},I.prototype.initialize.call(this,e),this.tagsEditor=null,this.dragItems=!0,this.annotationEditor=null,this.purgeAllowed=e.purgeAllowed||!1,this.annotationEditorShown=e.annotationEditorShown||!1,this.tagsEditorShown=e.tagsEditorShown||!1},_setUpListeners:function(){return I.prototype._setUpListeners.call(this),this.on({"droptarget:drop":function(e,t){this.dataDropped(t),this.dropTargetOff()},"view:attached view:removed":function(){this._renderCounts()},"search:loading-progress":this._renderSearchProgress,"search:searching":this._renderSearchFindings})},_setUpModelListeners:function(){return I.prototype._setUpModelListeners.call(this),this.listenTo(this.model,"change:size",this.updateHistoryDiskSize),this},_setUpCollectionListeners:function(){return I.prototype._setUpCollectionListeners.call(this),this.listenTo(this.collection,{"change:deleted":this._handleItemDeletedChange,"change:visible":this._handleItemVisibleChange,"change:purged":function(e){this.model.fetch()},"fetching-deleted":function(e){this.$("> .controls .deleted-count").html("<i>"+(0,L.default)("loading...")+"</i>")},"fetching-hidden":function(e){this.$("> .controls .hidden-count").html("<i>"+(0,L.default)("loading...")+"</i>")},"fetching-deleted-done fetching-hidden-done":this._renderCounts}),this},_buildNewRender:function(){var e=I.prototype._buildNewRender.call(this);return this.model?(Galaxy&&Galaxy.user&&Galaxy.user.id&&Galaxy.user.id===this.model.get("user_id")&&(this._renderTags(e),this._renderAnnotation(e)),e):e},updateHistoryDiskSize:function(){this.$(".history-size").text(this.model.get("nice_size"))},renderItems:function(e){var t=I.prototype.renderItems.call(this,e);return this.searchFor?this._renderSearchFindings(e):this._renderCounts(e),t},_renderCounts:function(t){t=t instanceof e?t:this.$el;var n=this.templates.counts(this.model.toJSON(),this);return t.find("> .controls .subtitle").html(n)},_renderTags:function(e){var t=this;this.tagsEditor=new _.default.TagsEditor({model:this.model,el:e.find(".controls .tags-display"),onshowFirstTime:function(){this.render()},onshow:function(){t.toggleHDATagEditors(!0,t.fxSpeed)},onhide:function(){t.toggleHDATagEditors(!1,t.fxSpeed)},$activator:(0,T.default)({title:(0,L.default)("Edit history tags"),classes:"history-tag-btn",faIcon:"fa-tags"}).appendTo(e.find(".controls .actions"))})},_renderAnnotation:function(e){var t=this;this.annotationEditor=new y.default.AnnotationEditor({model:this.model,el:e.find(".controls .annotation-display"),onshowFirstTime:function(){this.render()},onshow:function(){t.toggleHDAAnnotationEditors(!0,t.fxSpeed)},onhide:function(){t.toggleHDAAnnotationEditors(!1,t.fxSpeed)},$activator:(0,T.default)({title:(0,L.default)("Edit history annotation"),classes:"history-annotate-btn",faIcon:"fa-comment"}).appendTo(e.find(".controls .actions"))})},_setUpBehaviors:function(e){if(e=e||this.$el,I.prototype._setUpBehaviors.call(this,e),this.model&&Galaxy.user&&!Galaxy.user.isAnonymous()&&Galaxy.user.id===this.model.get("user_id")){var t=this;e.find("> .controls .name").attr("title",(0,L.default)("Click to rename history")).tooltip({placement:"bottom"}).make_text_editable({on_finish:function(e){var n=t.model.get("name");e&&e!==n?(t.$el.find("> .controls .name").text(e),t.model.save({name:e}).fail(function(){t.$el.find("> .controls .name").text(t.model.previous("name"))})):t.$el.find("> .controls .name").text(n)}})}},multiselectActions:function(){var e=this,t=[{html:(0,L.default)("Hide datasets"),func:function(){var t=u.default.HistoryDatasetAssociation.prototype.hide;e.getSelectedModels().ajaxQueue(t)}},{html:(0,L.default)("Unhide datasets"),func:function(){var t=u.default.HistoryDatasetAssociation.prototype.unhide;e.getSelectedModels().ajaxQueue(t)}},{html:(0,L.default)("Delete datasets"),func:function(){var t=u.default.HistoryDatasetAssociation.prototype.delete;e.getSelectedModels().ajaxQueue(t)}},{html:(0,L.default)("Undelete datasets"),func:function(){var t=u.default.HistoryDatasetAssociation.prototype.undelete;e.getSelectedModels().ajaxQueue(t)}}];return e.purgeAllowed&&t.push({html:(0,L.default)("Permanently delete datasets"),func:function(){if(confirm((0,L.default)("This will permanently remove the data in your datasets. Are you sure?"))){var t=u.default.HistoryDatasetAssociation.prototype.purge;e.getSelectedModels().ajaxQueue(t)}}}),t=t.concat(e._collectionActions())},_collectionActions:function(){var e=this;return[{html:(0,L.default)("Build Dataset List"),func:function(){e.buildCollection("list")}},{html:(0,L.default)("Build Dataset Pair"),func:function(){e.buildCollection("paired")}},{html:(0,L.default)("Build List of Dataset Pairs"),func:function(){e.buildCollection("list:paired")}}]},buildCollection:function(e,t,n){var i,r=this,t=t||r.getSelectedModels(),n=n||!1;"list"==e?i=w.default.createListCollection:"paired"==e?i=k.default.createPairCollection:"list:paired"==e?i=C.default.createListOfPairsCollection:console.warn("Unknown collectionType encountered "+e),i(t,n).done(function(){r.model.refresh()})},_getItemViewOptions:function(e){var t=I.prototype._getItemViewOptions.call(this,e);return i.extend(t,{purgeAllowed:this.purgeAllowed,tagsEditorShown:this.tagsEditor&&!this.tagsEditor.hidden,annotationEditorShown:this.annotationEditor&&!this.annotationEditor.hidden}),t},_handleItemDeletedChange:function(e){e.get("deleted")?this._handleItemDeletion(e):this._handleItemUndeletion(e),this._renderCounts()},_handleItemDeletion:function(e){var t=this.model.get("contents_active");t.deleted+=1,t.active-=1,this.model.contents.includeDeleted||this.removeItemView(e),this.model.set("contents_active",t)},_handleItemUndeletion:function(e){var t=this.model.get("contents_active");t.deleted-=1,this.model.contents.includeDeleted||(t.active-=1),this.model.set("contents_active",t)},_handleItemVisibleChange:function(e){e.hidden()?this._handleItemHidden(e):this._handleItemUnhidden(e),this._renderCounts()},_handleItemHidden:function(e){var t=this.model.get("contents_active");t.hidden+=1,t.active-=1,this.model.contents.includeHidden||this.removeItemView(e),this.model.set("contents_active",t)},_handleItemUnhidden:function(e){var t=this.model.get("contents_active");t.hidden-=1,this.model.contents.includeHidden||(t.active-=1),this.model.set("contents_active",t)},toggleHDATagEditors:function(e,t){i.each(this.views,function(n){n.tagsEditor&&n.tagsEditor.toggle(e,t)})},toggleHDAAnnotationEditors:function(e,t){i.each(this.views,function(n){n.annotationEditor&&n.annotationEditor.toggle(e,t)})},events:i.extend(i.clone(I.prototype.events),{"click .show-selectors-btn":"toggleSelectors","click .toggle-deleted-link":function(e){this.toggleShowDeleted()},"click .toggle-hidden-link":function(e){this.toggleShowHidden()}}),_renderSearchProgress:function(e,t){var n=e+t;return this.$("> .controls .subtitle").html(["<i>",(0,L.default)("Searching "),n,"/",this.model.contentsShown(),"</i>"].join(""))},_renderSearchFindings:function(t){t=t instanceof e?t:this.$el;var n=this.templates.found(this.model.toJSON(),this);return t.find("> .controls .subtitle").html(n),this},dropTargetOn:function(){if(this.dropTarget)return this;this.dropTarget=!0;var e={dragenter:i.bind(this.dragenter,this),dragover:i.bind(this.dragover,this),dragleave:i.bind(this.dragleave,this),drop:i.bind(this.drop,this)},t=this._renderDropTarget();this.$list().before([this._renderDropTargetHelp(),t]);for(var n in e)e.hasOwnProperty(n)&&t.on(n,e[n]);return this},_renderDropTarget:function(){return this.$(".history-drop-target").remove(),r("<div/>").addClass("history-drop-target")},_renderDropTargetHelp:function(){return this.$(".history-drop-target-help").remove(),r("<div/>").addClass("history-drop-target-help").text((0,L.default)("Drag datasets here to copy them to the current history"))},dropTargetOff:function(){if(!this.dropTarget)return this;this.dropTarget=!1;var e=this.$(".history-drop-target").get(0);for(var t in this._dropHandlers)this._dropHandlers.hasOwnProperty(t)&&e.off(t,this._dropHandlers[t]);return this.$(".history-drop-target").remove(),this.$(".history-drop-target-help").remove(),this},dropTargetToggle:function(){return this.dropTarget?this.dropTargetOff():this.dropTargetOn(),this},dragenter:function(e){e.preventDefault(),e.stopPropagation(),this.$(".history-drop-target").css("border","2px solid black")},dragover:function(e){e.preventDefault(),e.stopPropagation()},dragleave:function(e){e.preventDefault(),e.stopPropagation(),this.$(".history-drop-target").css("border","1px dashed black")},drop:function(e){e.preventDefault();var t=this,n=e.originalEvent.dataTransfer,i=n.getData("text");n.dropEffect="move";try{i=JSON.parse(i)}catch(e){t.warn("error parsing JSON from drop:",i)}return t.trigger("droptarget:drop",e,i,t),!1},dataDropped:function(t){var n=this;return i.isObject(t)&&"HistoryDatasetAssociation"===t.model_class&&t.id?0!==n.contents.currentPage?n.contents.fetchPage(0).then(function(){return n.model.contents.copy(t.id)}):n.model.contents.copy(t.id):e.when()},toString:function(){return"HistoryViewEdit("+(this.model?this.model.get("name"):"")+")"}});D.prototype.templates=function(){var e=A.default.wrapTemplate(["<% var shown = Math.max( view.views.length, history.contents_active.active ) %>","<% if( shown ){ %>",'<span class="shown-count">',"<%- shown %> ",(0,L.default)("shown"),"</span>","<% } %>","<% if( history.contents_active.deleted ){ %>",'<span class="deleted-count">',"<% if( view.model.contents.includeDeleted ){ %>",'<a class="toggle-deleted-link" href="javascript:void(0);">',(0,L.default)("hide deleted"),"</a>","<% } else { %>","<%- history.contents_active.deleted %> ",'<a class="toggle-deleted-link" href="javascript:void(0);">',(0,L.default)("deleted"),"</a>","<% } %>","</span>","<% } %>","<% if( history.contents_active.hidden ){ %>",'<span class="hidden-count">',"<% if( view.model.contents.includeHidden ){ %>",'<a class="toggle-hidden-link" href="javascript:void(0);">',(0,L.default)("hide hidden"),"</a>","<% } else { %>","<%- history.contents_active.hidden %> ",'<a class="toggle-hidden-link" href="javascript:void(0);">',(0,L.default)("hidden"),"</a>","<% } %>","</span>","<% } %>"],"history"),t=A.default.wrapTemplate([(0,L.default)("Found")," <%- view.views.length %>, ","<% if( history.contents_active.deleted ){ %>","<% if( view.model.contents.includeDeleted ){ %>",'<a class="toggle-deleted-link" href="javascript:void(0);">',(0,L.default)("hide deleted"),"</a>, ","<% } else { %>",'<a class="toggle-deleted-link" href="javascript:void(0);">',(0,L.default)("show deleted"),"</a>, ","<% } %>","<% } %>","<% if( history.contents_active.hidden ){ %>","<% if( view.model.contents.includeHidden ){ %>",'<a class="toggle-hidden-link" href="javascript:void(0);">',(0,L.default)("hide hidden"),"</a>","<% } else { %>",'<a class="toggle-hidden-link" href="javascript:void(0);">',(0,L.default)("show hidden"),"</a>","<% } %>","<% } %>"],"history");return i.extend(i.clone(I.prototype.templates),{counts:e,found:t})}(),t.default={HistoryViewEdit:D}}).call(t,n(0),n(1),n(0))},function(e,t,n){"use strict";(function(e,i){function r(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=n(60),o=r(a),s=n(40),l=r(s),c=n(4),d=r(c),u=n(3),h=r(u),f=o.default.DatasetListItemEdit,p=f.extend({className:f.prototype.className+" history-content",_fetchModelDetails:function(){var t=this;return t.model.inReadyState()&&!t.model.hasDetails()?t.model.fetch({silent:!0}):t.model.has("rerunnable")?e.when():t.model.fetch({silent:!0,data:{keys:["rerunnable","creating_job"].join(",")}})},events:i.extend(i.clone(f.prototype.events),{"click .unhide-link":function(e){return this.model.unhide(),!1}}),toString:function(){return"HDAListItemEdit("+(this.model?""+this.model:"(no model)")+")"}});p.prototype.templates=function(){var e=i.extend({},f.prototype.templates.warnings,{hidden:d.default.wrapTemplate(["<% if( !dataset.visible ){ %>",'<div class="hidden-msg warningmessagesmall">',(0,h.default)("This dataset has been hidden"),'<br /><a class="unhide-link" a href="javascript:void(0);">',(0,h.default)("Unhide it"),"</a>","</div>","<% } %>"],"dataset")});return i.extend({},f.prototype.templates,{titleBar:l.default.HDAListItemView.prototype.templates.titleBar,warnings:e})}(),t.default={HDAListItemEdit:p}}).call(t,n(0),n(1))},function(e,t,n){"use strict";(function(e,i,r){function a(e){return e&&e.__esModule?e:{default:e}}function o(e,t){var n=e.toJSON();return v(n,{defaultHideSourceItems:t,creationFn:function(t,n,i){return t=[{name:"forward",src:"hda",id:t[0].id},{name:"reverse",src:"hda",id:t[1].id}],e.createHDCA(t,"paired",n,i)}})}Object.defineProperty(t,"__esModule",{value:!0});var s=n(28),l=a(s),c=n(20),d=a(c),u=n(4),h=a(u),f=n(3),p=a(f),g=e.View.extend(h.default.LoggableMixin).extend({_logNamespace:"collections",tagName:"li",className:"collection-element",initialize:function(e){this.element=e.element||{},this.identifier=e.identifier},render:function(){return this.$el.attr("data-element-id",this.element.id).html(this.template({identifier:this.identifier,element:this.element})),this},template:i.template(['<span class="identifier"><%- identifier %></span>','<span class="name"><%- element.name %></span>'].join("")),destroy:function(){this.off(),this.$el.remove()},toString:function(){return"DatasetCollectionElementView()"}}),m=l.default.ListCollectionCreator,_=m.extend({elementViewClass:g,collectionClass:d.default.HistoryDatasetCollection,className:"pair-collection-creator collection-creator flex-row-container",_mangleDuplicateNames:function(){},render:function(e,t){return 2===this.workingElements.length?m.prototype.render.call(this,e,t):this._renderInvalid(e,t)},_renderList:function(e,t){var n=this,a=r("<div/>"),o=n.$list();i.each(this.elementViews,function(e){e.destroy(),n.removeElementView(e)}),a.append(n._createForwardElementView().$el),a.append(n._createReverseElementView().$el),o.empty().append(a.children()),i.invoke(n.elementViews,"render")},_createForwardElementView:function(){return this._createElementView(this.workingElements[0],{identifier:"forward"})},_createReverseElementView:function(){return this._createElementView(this.workingElements[1],{identifier:"reverse"})},_createElementView:function(e,t){var n=new this.elementViewClass(i.extend(t,{element:e}));return this.elementViews.push(n),n},swap:function(){this.workingElements=[this.workingElements[1],this.workingElements[0]],this._renderList()},events:i.extend(i.clone(m.prototype.events),{"click .swap":"swap"}),templates:i.extend(i.clone(m.prototype.templates),{middle:i.template(['<div 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RegExp(this.filters[1])]),n}e=e||{},e.createPair=e.createPair||function(e){e=e||{};var t=e.listA.splice(e.indexA,1)[0],n=e.listB.splice(e.indexB,1)[0],i=e.listB.indexOf(t),r=e.listA.indexOf(n);return-1!==i&&e.listB.splice(i,1),-1!==r&&e.listA.splice(r,1),this._pair(t,n,{silent:!0})};var n=[];return e.preprocessMatch=e.preprocessMatch||function(e){var n=t.call(this);return i.extend(e,{matchTo:e.matchTo.name.replace(n[0],""),possible:e.possible.name.replace(n[1],"")})},function(t){this.debug("autopair _strategy ---------------------------"),t=t||{};var n,i=t.listA,r=t.listB,a=0,o={score:0,index:null},s=[];for(this.debug("starting list lens:",i.length,r.length),this.debug("bestMatch (starting):",JSON.stringify(o,null,"  "));a<i.length;){var l=i[a];for(o.score=0,n=0;n<r.length;n++){var c=r[n];if(this.debug(a+":"+l.name),this.debug(n+":"+c.name),i[a]!==r[n]&&(o=e.match.call(this,e.preprocessMatch.call(this,{matchTo:l,possible:c,index:n,bestMatch:o})),this.debug("bestMatch:",JSON.stringify(o,null,"  ")),1===o.score)){this.debug("breaking early due to perfect match");break}}var d=e.scoreThreshold.call(this);if(this.debug("scoreThreshold:",d),this.debug("bestMatch.score:",o.score),o.score>=d?s.push(e.createPair.call(this,{listA:i,indexA:a,listB:r,indexB:o.index})):a+=1,!i.length||!r.length)return s}return this.debug("paired:",JSON.stringify(s,null,"  ")),this.debug("autopair _strategy ---------------------------"),s}}function l(e,t){var n=e.toJSON();return w(n,{historyId:e.historyId,defaultHideSourceItems:t})}Object.defineProperty(t,"__esModule",{value:!0});var c=n(99),d=o(c),u=n(53),h=o(u),f=n(52),p=o(f),g=n(4),m=o(g),_=n(3),v=o(_);n(54);var y=e.View.extend(m.default.LoggableMixin).extend({_logNamespace:"collections",tagName:"li",className:"dataset paired",initialize:function(e){this.pair=e.pair||{}},template:i.template(['<span class="forward-dataset-name flex-column"><%- pair.forward.name %></span>','<span class="pair-name-column flex-column">','<span class="pair-name"><%- pair.name %></span>',"</span>",'<span class="reverse-dataset-name flex-column"><%- pair.reverse.name %></span>'].join("")),render:function(){this.dragStartHandler=i.bind(this._dragstart,this),this.dragEndHandler=i.bind(this._dragend,this);var e=this.$el.attr("draggable",!0).data("pair",this.pair).html(this.template({pair:this.pair})).addClass("flex-column-container").get(0);return e.addEventListener("dragstart",this.dragStartHandler,!1),e.addEventListener("dragend",this.dragEndHandler,!1),this},events:{dragover:"_sendToParent",drop:"_sendToParent"},_dragstart:function(e){e.currentTarget.style.opacity="0.4",e.originalEvent&&(e=e.originalEvent),e.dataTransfer.effectAllowed="move",e.dataTransfer.setData("text/plain",JSON.stringify(this.pair)),this.$el.parent().trigger("pair.dragstart",[this])},_dragend:function(e){e.currentTarget.style.opacity="1.0",this.$el.parent().trigger("pair.dragend",[this])},_sendToParent:function(e){this.$el.parent().trigger(e)},toString:function(){return"PairView("+this.pair.name+")"}}),b=e.View.extend(m.default.LoggableMixin).extend(p.default.CollectionCreatorMixin).extend({_logNamespace:"collections",className:"list-of-pairs-collection-creator collection-creator flex-row-container",initialize:function(e){this.metric("PairedCollectionCreator.initialize",e),e=i.defaults(e,{datasets:[],filters:this.DEFAULT_FILTERS,automaticallyPair:!0,strategy:"lcs",matchPercentage:.9,twoPassAutopairing:!0}),this.initialList=e.datasets,this.historyId=e.historyId,this.filters=this.commonFilters[e.filters]||this.commonFilters[this.DEFAULT_FILTERS],i.isArray(e.filters)&&(this.filters=e.filters),this.automaticallyPair=e.automaticallyPair,this.strategy=this.strategies[e.strategy]||this.strategies[this.DEFAULT_STRATEGY],i.isFunction(e.strategy)&&(this.strategy=e.strategy),this.matchPercentage=e.matchPercentage,this.twoPassAutopairing=e.twoPassAutopairing,this.removeExtensions=!0,this.oncancel=e.oncancel,this.oncreate=e.oncreate,this.autoscrollDist=e.autoscrollDist||24,this.unpairedPanelHidden=!1,this.pairedPanelHidden=!1,this.$dragging=null,this.blocking=!1,this._setUpCommonSettings(e),this._setUpBehaviors(),this._dataSetUp()},commonFilters:{illumina:["_1","_2"],Rs:["_R1","_R2"]},DEFAULT_FILTERS:"illumina",strategies:{simple:"autopairSimple",lcs:"autopairLCS",levenshtein:"autopairLevenshtein"},DEFAULT_STRATEGY:"lcs",_dataSetUp:function(){this.paired=[],this.unpaired=[],this.selectedIds=[],this._sortInitialList(),this._ensureIds(),this.unpaired=this.initialList.slice(0),this.automaticallyPair&&(this.autoPair(),this.once("rendered:initial",function(){this.trigger("autopair")}))},_sortInitialList:function(){this._sortDatasetList(this.initialList)},_sortDatasetList:function(e){return e.sort(function(e,t){return(0,h.default)(e.name,t.name)}),e},_ensureIds:function(){return this.initialList.forEach(function(e){e.hasOwnProperty("id")||(e.id=i.uniqueId())}),this.initialList},_splitByFilters:function(){function e(e,t){return t.test(e.name)}var t=this.filters.map(function(e){return new RegExp(e)}),n=[[],[]];return this.unpaired.forEach(function(i){t.forEach(function(t,r){e(i,t)&&n[r].push(i)})}),n},_addToUnpaired:function(e){var t=this;this.unpaired.splice(function n(i,r){if(i===r)return i;var a=Math.floor((r-i)/2)+i,o=(0,h.default)(e.name,t.unpaired[a].name);if(o<0)return n(i,a);if(o>0)return n(a+1,r);for(;t.unpaired[a]&&t.unpaired[a].name===e.name;)a++;return a}(0,this.unpaired.length),0,e)},autoPair:function(e){var t=this._splitByFilters(),n=[];return this.twoPassAutopairing&&(n=this.autopairSimple({listA:t[0],listB:t[1]}),t=this._splitByFilters()),e=e||this.strategy,t=this._splitByFilters(),n=n.concat(this[e].call(this,{listA:t[0],listB:t[1]}))},autopairSimple:s({scoreThreshold:function(){return.6},match:function(e){return e=e||{},e.matchTo===e.possible?{index:e.index,score:1}:e.bestMatch}}),autopairLevenshtein:s({scoreThreshold:function(){return this.matchPercentage},match:function(e){e=e||{};var t=(0,d.default)(e.matchTo,e.possible),n=1-t/Math.max(e.matchTo.length,e.possible.length);return n>e.bestMatch.score?{index:e.index,score:n}:e.bestMatch}}),autopairLCS:s({scoreThreshold:function(){return this.matchPercentage},match:function(e){e=e||{};var t=this._naiveStartingAndEndingLCS(e.matchTo,e.possible).length,n=t/Math.max(e.matchTo.length,e.possible.length);return n>e.bestMatch.score?{index:e.index,score:n}:e.bestMatch}}),_naiveStartingAndEndingLCS:function(e,t){for(var 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s=s||0,l=l||0,c=this.canvas.getContext("2d");c.lineCap="round",c.strokeStyle=this.outer_color,c.lineWidth=o,c.beginPath(),c.moveTo(e,t+s),c.bezierCurveTo(e+r,t+s,n-r,i+l,n,i+l),c.stroke(),c.strokeStyle=this.inner_color,c.lineWidth=a,c.beginPath(),c.moveTo(e,t+s),c.bezierCurveTo(e+r,t+s,n-r,i+l,n,i+l),c.stroke()}}),t.default=n}).call(t,n(0))},function(e,t,n){"use strict";(function(e,i,r,a){function o(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=n(3),l=o(s),c=n(7),d=o(c),u=n(18),h=o(u),f=n(5),p=o(f),g=n(12),m=o(g),_=e.View.extend({el:"#center",model:null,options:{},defaults:{edit_mode:!1},events:{"click .toolbtn_modify_dataset":"enableModification","click .toolbtn_cancel_modifications":"render","click .toolbtn-download-dataset":"downloadDataset","click .toolbtn-import-dataset":"importIntoHistory","click .copy-link-to-clipboard":"copyToClipboard","click .make-private":"makeDatasetPrivate","click 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If your file is not detected properly as one of the known formats, it most likely means that it has some format problems (e.g., different number of columns on different rows). You can still coerce the system to set your data to the format you think it should be. You can also upload compressed files, which will automatically be decompressed."},list_genomes:[],initialize:function(e){this.options=i.extend(this.options,e),this.fetchExtAndGenomes(),this.options.id&&this.fetchDataset()},fetchDataset:function(e){this.options=i.extend(this.options,e),this.model=new h.default.Item({id:this.options.id});var t=this;this.model.fetch({success:function(){t.options.show_permissions?t.showPermissions():t.options.show_version?t.fetchVersion():t.render()},error:function(e,t){void 0!==t.responseJSON?d.default.error(t.responseJSON.err_msg+" Click this to go back.","",{onclick:function(){Galaxy.libraries.library_router.back()}}):d.default.error("An error occurred. Click this to go back.","",{onclick:function(){Galaxy.libraries.library_router.back()}})}})},render:function(e){this.options=i.extend(this.options,e),r(".tooltip").remove();var t=this.templateDataset();this.$el.html(t({item:this.model})),r(".peek").html(this.model.get("peek")),r("#center [data-toggle]").tooltip()},fetchVersion:function(e){this.options=i.extend(this.options,e);var t=this;this.options.ldda_id?(this.ldda=new h.default.Ldda({id:this.options.ldda_id}),this.ldda.url=this.ldda.urlRoot+this.model.id+"/versions/"+this.ldda.id,this.ldda.fetch({success:function(){t.renderVersion()},error:function(e,t){void 0!==t.responseJSON?d.default.error(t.responseJSON.err_msg):d.default.error("An error occurred.")}})):(this.render(),d.default.error("Library dataset version requested but no id provided."))},renderVersion:function(){r(".tooltip").remove();var e=this.templateVersion();this.$el.html(e({item:this.model,ldda:this.ldda})),r(".peek").html(this.ldda.get("peek"))},enableModification:function(){r(".tooltip").remove();var e=this.templateModifyDataset();this.$el.html(e({item:this.model})),this.renderSelectBoxes({genome_build:this.model.get("genome_build"),file_ext:this.model.get("file_ext")}),r(".peek").html(this.model.get("peek")),r("#center [data-toggle]").tooltip()},downloadDataset:function(){var e=Galaxy.root+"api/libraries/datasets/download/uncompressed",t={ld_ids:this.id};this.processDownload(e,t)},processDownload:function(e,t,n){if(e&&t){t="string"==typeof t?t:r.param(t);var i="";r.each(t.split("&"),function(){var e=this.split("=");i+='<input type="hidden" name="'+e[0]+'" value="'+e[1]+'" />'}),r('<form action="'+e+'" method="'+(n||"post")+'">'+i+"</form>").appendTo("body").submit().remove(),d.default.info("Your download will begin soon.")}},importIntoHistory:function(){this.refreshUserHistoriesList(function(e){var t=e.templateBulkImportInModal();e.modal=Galaxy.modal,e.modal.show({closing_events:!0,title:(0,l.default)("Import into History"),body:t({histories:e.histories.models}),buttons:{Import:function(){e.importCurrentIntoHistory()},Close:function(){Galaxy.modal.hide()}}})})},refreshUserHistoriesList:function(e){var t=this;this.histories=new h.default.GalaxyHistories,this.histories.fetch({success:function(n){0===n.length?d.default.warning("You have to create history first. Click this to do so.","",{onclick:function(){window.location=Galaxy.root}}):e(t)},error:function(e,t){void 0!==t.responseJSON?d.default.error(t.responseJSON.err_msg):d.default.error("An error occurred.")}})},importCurrentIntoHistory:function(){this.modal.disableButton("Import");var e=this.modal.$("input[name=history_name]").val(),t=this;if(""!==e)r.post(Galaxy.root+"api/histories",{name:e}).done(function(e){t.processImportToHistory(e.id)}).fail(function(e,t,n){d.default.error("An error occurred.")}).always(function(){t.modal.enableButton("Import")});else{var n=r(this.modal.$el).find("select[name=dataset_import_single] option:selected").val();this.processImportToHistory(n),this.modal.enableButton("Import")}},processImportToHistory:function(e){var t=new h.default.HistoryItem;t.url=t.urlRoot+e+"/contents",a.getJSON(Galaxy.root+"history/set_as_current?id="+e),t.save({content:this.id,source:"library"},{success:function(){Galaxy.modal.hide(),d.default.success("Dataset imported. Click this to start analyzing it.","",{onclick:function(){window.location=Galaxy.root}})},error:function(e,t){void 0!==t.responseJSON?d.default.error("Dataset not imported. "+t.responseJSON.err_msg):d.default.error("An error occured. Dataset not imported. Please try again.")}})},showPermissions:function(e){var t=this.templateDatasetPermissions(),n=this;this.options=i.extend(this.options,e),r(".tooltip").remove(),void 0!==this.options.fetched_permissions&&(0===this.options.fetched_permissions.access_dataset_roles.length?this.model.set({is_unrestricted:!0}):this.model.set({is_unrestricted:!1})),this.$el.html(t({item:this.model,is_admin:Galaxy.config.is_admin_user})),r.get(Galaxy.root+"api/libraries/datasets/"+n.id+"/permissions?scope=current").done(function(e){n.prepareSelectBoxes({fetched_permissions:e,is_admin:Galaxy.config.is_admin_user})}).fail(function(){d.default.error("An error occurred while attempting to fetch dataset permissions.")}),r("#center [data-toggle]").tooltip(),r("#center").css("overflow","auto")},_serializeRoles:function(e){for(var t=[],n=0;n<e.length;n++)t.push(e[n][1]+":"+e[n][0].replace(":"," ").replace(","," &"));return t},prepareSelectBoxes:function(e){this.options=i.extend(this.options,e),this.accessSelectObject=new m.default.View(this._generate_select_options({selector:"access_perm",initialData:this._serializeRoles(this.options.fetched_permissions.access_dataset_roles)})),this.modifySelectObject=new m.default.View(this._generate_select_options({selector:"modify_perm",initialData:this._serializeRoles(this.options.fetched_permissions.modify_item_roles)})),this.manageSelectObject=new m.default.View(this._generate_select_options({selector:"manage_perm",initialData:this._serializeRoles(this.options.fetched_permissions.manage_dataset_roles)}))},_generate_select_options:function(e){var t={minimumInputLength:0,multiple:!0,placeholder:"Click to select a role",formatResult:function(e){return e.name+" type: "+e.type},formatSelection:function(e){return e.name},initSelection:function(e,t){var n=[];r(e.val().split(",")).each(function(){var e=this.split(":");n.push({id:e[0],name:e[1]})}),t(n)},dropdownCssClass:"bigdrop"};return t.container=this.$el.find("#"+e.selector),t.css=e.selector,t.initialData=e.initialData.join(","),t.ajax={url:Galaxy.root+"api/libraries/datasets/"+this.id+"/permissions?scope=available",dataType:"json",quietMillis:100,data:function(e,t){return{q:e,page_limit:10,page:t}},results:function(e,t){var n=10*t<e.total;return{results:e.roles,more:n}}},t},saveModifications:function(e){var t=!1,n=this.model,i=this.$el.find(".input_dataset_name").val();if(void 0!==i&&i!==n.get("name")){if(!(i.length>0))return void d.default.warning("Library dataset name has to be at least 1 character long.");n.set("name",i),t=!0}var r=this.$el.find(".input_dataset_misc_info").val();void 0!==r&&r!==n.get("misc_info")&&(n.set("misc_info",r),t=!0);var a=this.select_genome.$el.select2("data").id;void 0!==a&&a!==n.get("genome_build")&&(n.set("genome_build",a),t=!0);var o=this.select_extension.$el.select2("data").id;void 0!==o&&o!==n.get("file_ext")&&(n.set("file_ext",o),t=!0);var s=this;t?n.save(null,{patch:!0,success:function(e){s.render(),d.default.success("Changes to library dataset saved.")},error:function(e,t){void 0!==t.responseJSON?d.default.error(t.responseJSON.err_msg):d.default.error("An error occured while attempting to update the library dataset.")}}):(s.render(),d.default.info("Nothing has changed."))},copyToClipboard:function(t){t.preventDefault();var n=e.history.location.href;-1!==n.lastIndexOf("/permissions")&&(n=n.substr(0,n.lastIndexOf("/permissions"))),window.prompt("Copy to clipboard: Ctrl+C, Enter",n)},makeDatasetPrivate:function(){var e=this;r.post(Galaxy.root+"api/libraries/datasets/"+e.id+"/permissions?action=make_private").done(function(t){e.model.set({is_unrestricted:!1}),e.showPermissions({fetched_permissions:t}),d.default.success("The dataset is now private to you.")}).fail(function(){d.default.error("An error occurred while attempting to make dataset private.")})},removeDatasetRestrictions:function(){var e=this;r.post(Galaxy.root+"api/libraries/datasets/"+e.id+"/permissions?action=remove_restrictions").done(function(t){e.model.set({is_unrestricted:!0}),e.showPermissions({fetched_permissions:t}),d.default.success("Access to this dataset is now unrestricted.")}).fail(function(){d.default.error("An error occurred while attempting to make dataset unrestricted.")})},_extractIds:function(e){for(var t=[],n=e.length-1;n>=0;n--)t.push(e[n].id);return t},savePermissions:function(e){var t=this,n=this._extractIds(this.accessSelectObject.$el.select2("data")),i=this._extractIds(this.manageSelectObject.$el.select2("data")),a=this._extractIds(this.modifySelectObject.$el.select2("data"));r.post(Galaxy.root+"api/libraries/datasets/"+t.id+"/permissions?action=set_permissions",{"access_ids[]":n,"manage_ids[]":i,"modify_ids[]":a}).done(function(e){t.showPermissions({fetched_permissions:e}),d.default.success("Permissions saved.")}).fail(function(){d.default.error("An error occurred while attempting to set dataset permissions.")})},fetchExtAndGenomes:function(){var e=this;0==this.list_genomes.length&&p.default.get({url:Galaxy.root+"api/datatypes?extension_only=False",success:function(t){for(var n in t)e.list_extensions.push({id:t[n].extension,text:t[n].extension,description:t[n].description,description_url:t[n].description_url});e.list_extensions.sort(function(e,t){return e.id>t.id?1:e.id<t.id?-1:0}),e.list_extensions.unshift(e.auto)}}),0==this.list_extensions.length&&p.default.get({url:Galaxy.root+"api/genomes",success:function(t){for(var n in t)e.list_genomes.push({id:t[n][1],text:t[n][0]});e.list_genomes.sort(function(e,t){return e.id>t.id?1:e.id<t.id?-1:0})}})},renderSelectBoxes:function(e){var t=this,n="?",i="auto";void 0!==e&&(void 0!==e.genome_build&&(n=e.genome_build),void 0!==e.file_ext&&(i=e.file_ext)),this.select_genome=new m.default.View({css:"dataset-genome-select",data:t.list_genomes,container:t.$el.find("#dataset_genome_select"),value:n}),this.select_extension=new m.default.View({css:"dataset-extension-select",data:t.list_extensions,container:t.$el.find("#dataset_extension_select"),value:i})},templateDataset:function(){return i.template(['<div class="library_style_container">','<div id="library_toolbar">','<button data-toggle="tooltip" data-placement="top" title="Download dataset" class="btn btn-default toolbtn-download-dataset primary-button toolbar-item" type="button">','<span class="fa fa-download"></span>',"&nbsp;Download","</button>",'<button data-toggle="tooltip" data-placement="top" title="Import dataset into history" class="btn btn-default toolbtn-import-dataset primary-button toolbar-item" type="button">','<span class="fa fa-book"></span>',"&nbsp;to History","</button>",'<% if (item.get("can_user_modify")) { %>','<button data-toggle="tooltip" data-placement="top" title="Modify library item" class="btn btn-default toolbtn_modify_dataset primary-button toolbar-item" type="button">','<span class="fa fa-pencil"></span>',"&nbsp;Modify","</button>","<% } %>",'<% if (item.get("can_user_manage")) { %>','<a href="#folders/<%- item.get("folder_id") %>/datasets/<%- item.id %>/permissions">','<button data-toggle="tooltip" data-placement="top" title="Manage permissions" class="btn btn-default toolbtn_change_permissions primary-button toolbar-item" type="button">','<span class="fa fa-group"></span>',"&nbsp;Permissions","</button>","</a>","<% } %>","</div>",'<ol class="breadcrumb">','<li><a title="Return to the list of libraries" href="#">Libraries</a></li>','<% _.each(item.get("full_path"), function(path_item) { %>',"<% if (path_item[0] != item.id) { %>",'<li><a title="Return to this folder" href="#/folders/<%- path_item[0] %>"><%- path_item[1] %></a> </li> ',"<% } else { %>",'<li class="active"><span title="You are here"><%- path_item[1] %></span></li>',"<% } %>","<% }); %>","</ol>",'<% if (item.get("is_unrestricted")) { %>',"<div>",'This dataset is unrestricted so everybody with the link can access it. Just share <span class="copy-link-to-clipboard"><a href=""a>this page</a></span>.',"</div>","<% } %>",'<div class="dataset_table">','<table class="grid table table-striped table-condensed">',"<tr>",'<th class="dataset-first-column" scope="row" id="id_row" data-id="<%= _.escape(item.get("ldda_id")) %>">Name</th>','<td><%= _.escape(item.get("name")) %></td>',"</tr>",'<% if (item.get("file_ext")) { %>',"<tr>",'<th scope="row">Data type</th>','<td><%= _.escape(item.get("file_ext")) %></td>',"</tr>","<% } %>",'<% if (item.get("genome_build")) { %>',"<tr>",'<th scope="row">Genome build</th>','<td><%= _.escape(item.get("genome_build")) %></td>',"</tr>","<% } %>",'<% if (item.get("file_size")) { %>',"<tr>",'<th scope="row">Size</th>','<td><%= _.escape(item.get("file_size")) %></td>',"</tr>","<% } %>",'<% if (item.get("date_uploaded")) { %>',"<tr>",'<th scope="row">Date uploaded (UTC)</th>','<td><%= _.escape(item.get("date_uploaded")) %></td>',"</tr>","<% } %>",'<% if (item.get("uploaded_by")) { %>',"<tr>",'<th scope="row">Uploaded by</th>','<td><%= _.escape(item.get("uploaded_by")) %></td>',"</tr>","<% } %>",'<% if (item.get("metadata_data_lines")) { %>',"<tr>",'<th scope="row">Data Lines</th>','<td scope="row"><%= _.escape(item.get("metadata_data_lines")) %></td>',"</tr>","<% } %>",'<% if (item.get("metadata_comment_lines")) { %>',"<tr>",'<th scope="row">Comment Lines</th>','<td scope="row"><%= _.escape(item.get("metadata_comment_lines")) %></td>',"</tr>","<% } %>",'<% if (item.get("metadata_columns")) { %>',"<tr>",'<th scope="row">Number of Columns</th>','<td scope="row"><%= _.escape(item.get("metadata_columns")) %></td>',"</tr>","<% } %>",'<% if (item.get("metadata_column_types")) { %>',"<tr>",'<th scope="row">Column Types</th>','<td scope="row"><%= _.escape(item.get("metadata_column_types")) %></td>',"</tr>","<% } %>",'<% if (item.get("message")) { %>',"<tr>",'<th scope="row">Message</th>','<td scope="row"><%= _.escape(item.get("message")) %></td>',"</tr>","<% } %>",'<% if (item.get("misc_blurb")) { %>',"<tr>",'<th scope="row">Misc. blurb</th>','<td scope="row"><%= _.escape(item.get("misc_blurb")) %></td>',"</tr>","<% } %>",'<% if (item.get("misc_info")) { %>',"<tr>",'<th scope="row">Misc. info</th>','<td scope="row"><%= _.escape(item.get("misc_info")) %></td>',"</tr>","<% } %>",'<% if (item.get("tags")) { %>',"<tr>",'<th scope="row">Tags</th>','<td scope="row"><%= _.escape(item.get("tags")) %></td>',"</tr>","<% } %>",'<% if ( item.get("uuid") !== "ok" ) { %>',"<tr>",'<th scope="row">UUID</th>','<td scope="row"><%= _.escape(item.get("uuid")) %></td>',"</tr>","<% } %>",'<% if ( item.get("state") !== "ok" ) { %>',"<tr>",'<th scope="row">State</th>','<td scope="row"><%= _.escape(item.get("state")) %></td>',"</tr>","<% } %>","</table>",'<% if (item.get("job_stderr")) { %>',"<h4>Job Standard Error</h4>",'<pre class="code">','<%= _.escape(item.get("job_stderr")) %>',"</pre>","<% } %>",'<% if (item.get("job_stdout")) { %>',"<h4>Job Standard Output</h4>",'<pre class="code">','<%= _.escape(item.get("job_stdout")) %>',"</pre>","<% } %>","<div>",'<pre class="peek">',"</pre>","</div>",'<% if (item.get("has_versions")) { %>',"<div>","<h3>Expired versions:</h3>","<ul>",'<% _.each(item.get("expired_versions"), function(version) { %>','<li><a title="See details of this version" href="#folders/<%- item.get("folder_id") %>/datasets/<%- item.id %>/versions/<%- version[0] %>"><%- version[1] %></a></li>',"<% }) %>","<ul>","</div>","<% } %>","</div>","</div>"].join(""))},templateVersion:function(){return i.template(['<div class="library_style_container">','<div id="library_toolbar">','<a href="#folders/<%- item.get("folder_id") %>/datasets/<%- item.id %>">','<button data-toggle="tooltip" data-placement="top" title="Go to latest dataset" class="btn btn-default primary-button toolbar-item" type="button">','<span class="fa fa-caret-left fa-lg"></span>',"&nbsp;Latest dataset","</button>","<a>","</div>",'<ol class="breadcrumb">','<li><a title="Return to the list of libraries" href="#">Libraries</a></li>','<% _.each(item.get("full_path"), function(path_item) { %>',"<% if (path_item[0] != item.id) { %>",'<li><a title="Return to this folder" href="#/folders/<%- path_item[0] %>"><%- path_item[1] %></a> </li> ',"<% } else { %>",'<li class="active"><span title="You are here"><%- path_item[1] %></span></li>',"<% } %>","<% }); %>","</ol>",'<div class="alert alert-warning">This is an expired version of the library dataset: <%= _.escape(item.get("name")) %></div>','<div class="dataset_table">','<table class="grid table table-striped table-condensed">',"<tr>",'<th scope="row" id="id_row" data-id="<%= _.escape(ldda.id) %>">Name</th>','<td><%= _.escape(ldda.get("name")) %></td>',"</tr>",'<% if (ldda.get("file_ext")) { %>',"<tr>",'<th scope="row">Data type</th>','<td><%= _.escape(ldda.get("file_ext")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("genome_build")) { %>',"<tr>",'<th scope="row">Genome build</th>','<td><%= _.escape(ldda.get("genome_build")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("file_size")) { %>',"<tr>",'<th scope="row">Size</th>','<td><%= _.escape(ldda.get("file_size")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("date_uploaded")) { %>',"<tr>",'<th scope="row">Date uploaded (UTC)</th>','<td><%= _.escape(ldda.get("date_uploaded")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("uploaded_by")) { %>',"<tr>",'<th scope="row">Uploaded by</th>','<td><%= _.escape(ldda.get("uploaded_by")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("metadata_data_lines")) { %>',"<tr>",'<th scope="row">Data Lines</th>','<td scope="row"><%= _.escape(ldda.get("metadata_data_lines")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("metadata_comment_lines")) { %>',"<tr>",'<th scope="row">Comment Lines</th>','<td scope="row"><%= _.escape(ldda.get("metadata_comment_lines")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("metadata_columns")) { %>',"<tr>",'<th scope="row">Number of Columns</th>','<td scope="row"><%= _.escape(ldda.get("metadata_columns")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("metadata_column_types")) { %>',"<tr>",'<th scope="row">Column Types</th>','<td scope="row"><%= _.escape(ldda.get("metadata_column_types")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("message")) { %>',"<tr>",'<th scope="row">Message</th>','<td scope="row"><%= _.escape(ldda.get("message")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("misc_blurb")) { %>',"<tr>",'<th scope="row">Miscellaneous blurb</th>','<td scope="row"><%= _.escape(ldda.get("misc_blurb")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("misc_info")) { %>',"<tr>",'<th scope="row">Miscellaneous information</th>','<td scope="row"><%= _.escape(ldda.get("misc_info")) %></td>',"</tr>","<% } %>",'<% if (item.get("tags")) { %>',"<tr>",'<th scope="row">Tags</th>','<td scope="row"><%= _.escape(item.get("tags")) %></td>',"</tr>","<% } %>","</table>","<div>",'<pre class="peek">',"</pre>","</div>","</div>","</div>"].join(""))},templateModifyDataset:function(){return i.template(['<div class="library_style_container">','<div id="library_toolbar">','<button data-toggle="tooltip" data-placement="top" title="Cancel modifications" class="btn btn-default toolbtn_cancel_modifications primary-button toolbar-item" type="button">','<span class="fa fa-times"></span>',"&nbsp;Cancel","</button>",'<button data-toggle="tooltip" data-placement="top" title="Save modifications" class="btn btn-default toolbtn_save_modifications primary-button toolbar-item" type="button">','<span class="fa fa-floppy-o"></span>',"&nbsp;Save","</button>","</div>",'<ol class="breadcrumb">','<li><a title="Return to the list of libraries" href="#">Libraries</a></li>','<% _.each(item.get("full_path"), function(path_item) { %>',"<% if (path_item[0] != item.id) { %>",'<li><a title="Return to this folder" href="#/folders/<%- path_item[0] %>"><%- path_item[1] %></a> </li> ',"<% } else { %>",'<li class="active"><span title="You are here"><%- path_item[1] %></span></li>',"<% } %>","<% }); 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u=e("#canvas-container").position(),h=e("#canvas-container").parent(),f=a.width(),p=a.height();return a.css({left:-u.left+h.width()/2-f/2,top:-u.top+h.height()/2-p/2}),d.prependTo(a.find(".toolFormTitle")),f+=d.width()+10,a.css("width",f),a.bind("dragstart",function(){r.workflow.activate_node(l)}).bind("dragend",function(){r.workflow.node_changed(this),r.workflow.fit_canvas_to_nodes(),r.canvas_manager.draw_overview()}).bind("dragclickonly",function(){r.workflow.activate_node(l)}).bind("drag",function(t,n){var i=e(this).offsetParent().offset(),r=n.offsetX-i.left,a=n.offsetY-i.top;e(this).css({left:r,top:a}),e(this).find(".terminal").each(function(){this.terminal.redraw()})}),l}})}).call(t,n(0),n(2),n(1))},function(e,t,n){"use strict";(function(e){function i(e,t){this.app=e,this.canvas_container=t,this.id_counter=0,this.nodes={},this.name=null,this.has_changes=!1,this.active_form_has_changes=!1,this.workflowOutputLabels={}}Object.defineProperty(t,"__esModule",{value:!0});var r=n(137),a=function(e){return e&&e.__esModule?e:{default:e}}(r),o=n(7),s=function(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}(o);e.extend(i.prototype,{canLabelOutputWith:function(e){return!e||!(e in this.workflowOutputLabels)},registerOutputLabel:function(e){e&&(this.workflowOutputLabels[e]=!0)},unregisterOutputLabel:function(e){e&&delete this.workflowOutputLabels[e]},updateOutputLabel:function(e,t){e&&this.unregisterOutputLabel(e),this.canLabelOutputWith(t)||s.warning("Workflow contains duplicate workflow output labels "+t+". This must be fixed before it can be saved."),t&&this.registerOutputLabel(t)},attemptUpdateOutputLabel:function(e,t,n){return!!this.canLabelOutputWith(n)&&(e.labelWorkflowOutput(t,n),e.nodeView.redrawWorkflowOutputs(),!0)},create_node:function(e,t,n){var i=this.app.prebuildNode(e,t,n);return this.add_node(i),this.fit_canvas_to_nodes(),this.app.canvas_manager.draw_overview(),this.activate_node(i),i},add_node:function(e){e.id=this.id_counter,e.element.attr("id","wf-node-step-"+e.id),this.id_counter++,this.nodes[e.id]=e,this.has_changes=!0,e.workflow=this},remove_node:function(e){this.active_node==e&&this.clear_active_node(),delete this.nodes[e.id],this.has_changes=!0},remove_all:function(){var t=this;e.each(this.nodes,function(e,n){n.destroy(),t.remove_node(n)})},rectify_workflow_outputs:function(){var t=!1,n=!1;if(e.each(this.nodes,function(i,r){r.workflow_outputs&&r.workflow_outputs.length>0&&(t=!0),e.each(r.post_job_actions,function(e,t){"HideDatasetAction"===t.action_type&&(n=!0)})}),!1!==t||!1!==n){var i=this;e.each(this.nodes,function(n,r){if("tool"===r.type){var a=!1;null===r.post_job_actions&&(r.post_job_actions={},a=!0);var o=[];e.each(r.post_job_actions,function(e,t){"HideDatasetAction"==t.action_type&&o.push(e)}),o.length>0&&e.each(o,function(e,t){a=!0,delete r.post_job_actions[t]}),t&&e.each(r.output_terminals,function(e,t){if(!0==!r.isWorkflowOutput(t.name)){a=!0;var n={action_type:"HideDatasetAction",output_name:t.name,action_arguments:{}};r.post_job_actions["HideDatasetAction"+t.name]=null,r.post_job_actions["HideDatasetAction"+t.name]=n}}),i.active_node==r&&!0===a&&i.reload_active_node()}})}},to_simple:function(){var t={};return e.each(this.nodes,function(n,i){var r={};e.each(i.input_terminals,function(t,n){r[n.name]=null;var i=[];e.each(n.connectors,function(e,t){if(t.handle1){var a={id:t.handle1.node.id,output_name:t.handle1.name},o=n.attributes.input.input_subworkflow_step_id;void 0!==o&&(a.input_subworkflow_step_id=o),i[e]=a,r[n.name]=i}})});var a={};i.post_job_actions&&e.each(i.post_job_actions,function(e,t){var n={action_type:t.action_type,output_name:t.output_name,action_arguments:t.action_arguments};a[t.action_type+t.output_name]=null,a[t.action_type+t.output_name]=n}),i.workflow_outputs||(i.workflow_outputs=[]);var o={id:i.id,type:i.type,content_id:i.content_id,tool_version:i.config_form.version,tool_state:i.tool_state,errors:i.errors,input_connections:r,position:e(i.element).position(),annotation:i.annotation,post_job_actions:i.post_job_actions,uuid:i.uuid,label:i.label,workflow_outputs:i.workflow_outputs};t[i.id]=o}),{steps:t}},from_simple:function(t,n){var i=void 0===n||n,r=this,o=0;i?r.name=t.name:o=Object.keys(r.nodes).length;var s=o,l=!1;e.each(t.steps,function(t,n){var a=r.app.prebuildNode(n.type,n.name,n.content_id);i||(n.uuid=null,e.each(n.workflow_outputs,function(e,t){t.uuid=null})),a.init_field_data(n),n.position&&a.element.css({top:n.position.top,left:n.position.left}),a.id=parseInt(n.id)+o,r.nodes[a.id]=a,s=Math.max(s,parseInt(t)+o),l||(a.workflow_outputs.length>0?l=!0:e.each(a.post_job_actions||[],function(e,t){"HideDatasetAction"===t.action_type&&(l=!0)}))}),r.id_counter=s+1,e.each(t.steps,function(t,n){var i=r.nodes[parseInt(t)+o];e.each(n.input_connections,function(t,n){n&&(e.isArray(n)||(n=[n]),e.each(n,function(e,n){var s=r.nodes[parseInt(n.id)+o],l=new a.default;l.connect(s.output_terminals[n.output_name],i.input_terminals[t]),l.redraw()}))}),l&&e.each(i.output_terminals,function(t,n){if(void 0===i.post_job_actions["HideDatasetAction"+n.name]){i.addWorkflowOutput(n.name);e(i.element).find(".callout."+n.name).find("img").attr("src",Galaxy.root+"static/images/fugue/asterisk-small.png"),r.has_changes=!0}})})},check_changes_in_active_form:function(){this.active_form_has_changes&&(this.has_changes=!0,e("#right-content").find("form").submit(),this.active_form_has_changes=!1)},reload_active_node:function(){if(this.active_node){var e=this.active_node;this.clear_active_node(),this.activate_node(e)}},clear_active_node:function(){this.active_node&&(this.active_node.make_inactive(),this.active_node=null),document.activeElement.blur(),this.app.showAttributes()},activate_node:function(e){this.active_node!=e&&(this.check_changes_in_active_form(),this.clear_active_node(),this.app.showForm(e.config_form,e),e.make_active(),this.active_node=e)},node_changed:function(e,t){this.has_changes=!0,this.active_node==e&&t&&(this.check_changes_in_active_form(),this.app.showForm(e.config_form,e)),this.app.showWorkflowParameters()},layout:function(){this.check_changes_in_active_form(),this.has_changes=!0;var t={},n={};e.each(this.nodes,function(e,i){void 0===t[e]&&(t[e]=0),void 0===n[e]&&(n[e]=[])}),e.each(this.nodes,function(i,r){e.each(r.input_terminals,function(i,a){e.each(a.connectors,function(e,i){var a=i.handle1.node;t[r.id]+=1,n[a.id].push(r.id)})})});for(var i=[];;){var r=[];for(var a in t)0===t[a]&&r.push(a);if(0===r.length)break;i.push(r);for(var o in r){var s=r[o];delete t[s];for(var l in n[s])t[n[s][l]]-=1}}if(!t.length){var c=this.nodes,d=80;e.each(i,function(t,n){n.sort(function(t,n){return e(c[t].element).position().top-e(c[n].element).position().top});var i=0,r=30;e.each(n,function(t,n){var a=c[n],o=e(a.element);e(o).css({top:r,left:d}),i=Math.max(i,e(o).width()),r+=e(o).height()+30}),d+=i+80}),e.each(c,function(e,t){t.redraw()})}},bounds_for_all_nodes:function(){var t,n=1/0,i=-1/0,r=1/0,a=-1/0;return e.each(this.nodes,function(o,s){var l=e(s.element);t=l.position(),n=Math.min(n,t.left),i=Math.max(i,t.left+l.width()),r=Math.min(r,t.top),a=Math.max(a,t.top+l.width())}),{xmin:n,xmax:i,ymin:r,ymax:a}},fit_canvas_to_nodes:function(){function t(e,t){return Math.ceil(e/t)*t}function n(e,t){if(e<t||e>3*t){return-(e-(Math.ceil(e%t/t)+1)*t)}return 0}var i=this.bounds_for_all_nodes(),r=this.canvas_container.position(),a=this.canvas_container.parent(),o=n(i.xmin,100),s=n(i.ymin,100);o=Math.max(o,r.left),s=Math.max(s,r.top);var l=r.left-o,c=r.top-s,d=t(i.xmax+100,100)+o,u=t(i.ymax+100,100)+s;d=Math.max(d,-l+a.width()),u=Math.max(u,-c+a.height()),this.canvas_container.css({left:l,top:c,width:d,height:u}),this.canvas_container.children().each(function(){var t=e(this).position();e(this).css("left",t.left+o),e(this).css("top",t.top+s)})}}),t.default=i}).call(t,n(0))},function(e,t,n){"use strict";(function(e){function n(e,t,n){this.app=e,this.cv=t,this.cc=this.cv.find("#canvas-container"),this.overview=n,this.oc=n.find("#overview-canvas"),this.ov=n.find("#overview-viewport"),this.init_drag(),this.init_copy_paste()}function i(e){this.panel=e}Object.defineProperty(t,"__esModule",{value:!0}),e.extend(n.prototype,{init_drag:function(){var t=this,n=function(e,n){e=Math.min(e,t.cv.width()/2),e=Math.max(e,-t.cc.width()+t.cv.width()/2),n=Math.min(n,t.cv.height()/2),n=Math.max(n,-t.cc.height()+t.cv.height()/2),t.cc.css({left:e,top:n}),t.cv.css({"background-position-x":e,"background-position-y":n}),t.update_viewport_overlay()};this.cc.each(function(){this.scroll_panel=new i(this)});var r,a;this.cv.bind("click",function(){document.activeElement.blur()}).bind("dragstart",function(){var n=e(this).offset(),i=t.cc.position();a=i.top-n.top,r=i.left-n.left}).bind("drag",function(e,t){n(t.offsetX+r,t.offsetY+a)}).bind("dragend",function(){t.app.workflow.fit_canvas_to_nodes(),t.draw_overview()}),this.overview.click(function(e){if(t.overview.hasClass("blockaclick"))t.overview.removeClass("blockaclick");else{var i=t.cc.width(),r=t.cc.height(),a=t.oc.width(),o=t.oc.height(),s=e.pageX-t.oc.offset().left-t.ov.width()/2,l=e.pageY-t.oc.offset().top-t.ov.height()/2;n(-s/a*i,-l/o*r),t.app.workflow.fit_canvas_to_nodes(),t.draw_overview()}}),this.ov.bind("drag",function(e,i){var r=t.cc.width(),a=t.cc.height(),o=t.oc.width(),s=t.oc.height(),l=i.offsetX-t.overview.offset().left,c=i.offsetY-t.overview.offset().top;n(-l/o*r,-c/s*a)}).bind("dragend",function(){t.overview.addClass("blockaclick"),t.app.workflow.fit_canvas_to_nodes(),t.draw_overview()}),e("#overview-border").bind("drag",function(n,i){var r=e(this).offsetParent(),a=r.offset(),o=Math.max(r.width()-(i.offsetX-a.left),r.height()-(i.offsetY-a.top));e(this).css({width:o,height:o}),t.draw_overview()}),e("#overview-border div").bind("drag",function(){})},init_copy_paste:function(){var e=this;document.addEventListener("copy",function(t){""===window.getSelection().toString()&&(e.app.workflow.active_node&&"subworkflow"!==e.app.workflow.active_node.type&&t.clipboardData.setData("application/json",JSON.stringify({nodeId:e.app.workflow.active_node.id})),t.preventDefault())}),document.addEventListener("paste",function(t){if(document.activeElement&&"textarea"!==document.activeElement.type&&"text"!==document.activeElement.type){var n;try{n=JSON.parse(t.clipboardData.getData("application/json")).nodeId}catch(e){}n&&e.app.workflow.nodes.hasOwnProperty(n)&&e.app.workflow.nodes[n].clone(),t.preventDefault()}})},update_viewport_overlay:function(){var e=this.cc,t=this.cv,n=this.oc,i=this.ov,r=e.width(),a=e.height(),o=n.width(),s=n.height(),l=e.position();i.css({left:-l.left/r*o,top:-l.top/a*s,width:t.width()/r*o-2,height:t.height()/a*s-2})},draw_overview:function(){var t,n,i,r,a=e("#overview-canvas"),o=a.parent().parent().width(),s=a.get(0).getContext("2d"),l=e("#canvas-container").width(),c=e("#canvas-container").height(),d=this.cv.width(),u=this.cv.height();l<d&&c<u?(i=l/d*o,r=(o-i)/2,t=c/u*o,n=(o-t)/2):l<c?(n=0,t=o,i=Math.ceil(t*l/c),r=(o-i)/2):(i=o,r=0,t=Math.ceil(i*c/l),n=(o-t)/2),a.parent().css({left:r,top:n,width:i,height:t}),a.attr("width",i),a.attr("height",t),e.each(this.app.workflow.nodes,function(n,r){s.fillStyle="#D2C099",s.strokeStyle="#D8B365",s.lineWidth=1;var a=e(r.element),o=a.position(),d=o.left/l*i,u=o.top/c*t,h=a.width()/l*i,f=a.height()/c*t;r.errors?(s.fillStyle="#FFCCCC",s.strokeStyle="#AA6666"):void 0!==r.workflow_outputs&&r.workflow_outputs.length>0&&(s.fillStyle="#E8A92D",s.strokeStyle="#E8A92D"),s.fillRect(d,u,h,f),s.strokeRect(d,u,h,f)}),this.update_viewport_overlay()}}),e.extend(i.prototype,{test:function(t,n){var i=this;clearTimeout(this.timeout);var r=t.pageX,a=t.pageY,o=e(this.panel),s=o.position(),l=o.width(),c=o.height(),d=o.parent(),u=d.width(),h=d.height(),f=d.offset(),p=f.left,g=f.top,m=p+d.width(),_=g+d.height(),v=-(l-u/2),y=-(c-h/2),b=u/2,w=h/2,x=!1,k=0;r-5<p?s.left<b&&(k=Math.min(23,b-s.left),o.css("left",s.left+k),x=!0):r+5>m?s.left>v&&(k=Math.min(23,s.left-v),o.css("left",s.left-k),x=!0):a-5<g?s.top<w&&(k=Math.min(23,w-s.top),o.css("top",s.top+k),x=!0):a+5>_&&s.top>y&&(k=Math.min(23,s.top-v),o.css("top",s.top-k+"px"),x=!0),x&&(n(),this.timeout=setTimeout(function(){i.test(t,n)},50))},stop:function(){clearTimeout(this.timeout)}}),t.default=n}).call(t,n(0))},function(e,t,n){"use strict";(function(e,i,r){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=n(5),s=a(o),l=n(306),c=a(l),d=e.Model.extend({initialize:function(e,t){this.app=e,this.element=t.element,this.input_terminals={},this.output_terminals={},this.errors={},this.workflow_outputs=[]},getWorkflowOutput:function(e){return i.findWhere(this.workflow_outputs,{output_name:e})},isWorkflowOutput:function(e){return void 0!==this.getWorkflowOutput(e)},removeWorkflowOutput:function(e){for(;this.isWorkflowOutput(e);)this.workflow_outputs.splice(this.getWorkflowOutput(e),1)},addWorkflowOutput:function(e,t){if(!this.isWorkflowOutput(e)){var n={output_name:e};return t&&(n.label=t),this.workflow_outputs.push(n),!0}return!1},labelWorkflowOutput:function(e,t){var n=!1,i=null;if(this.isWorkflowOutput(e)){var r=this.getWorkflowOutput(e);i=r.label,r.label=t,n=i!=t}else n=this.addWorkflowOutput(e,t);return n&&(this.app.workflow.updateOutputLabel(i,t),this.markChanged(),this.nodeView.redrawWorkflowOutputs()),n},connectedOutputTerminals:function(){return this._connectedTerminals(this.output_terminals)},_connectedTerminals:function(e){var t=[];return r.each(e,function(e,n){n.connectors.length>0&&t.push(n)}),t},hasConnectedOutputTerminals:function(){var e=this.output_terminals;for(var t in e)if(e[t].connectors.length>0)return!0;return!1},connectedMappedInputTerminals:function(){return this._connectedMappedTerminals(this.input_terminals)},hasConnectedMappedInputTerminals:function(){var e=this.input_terminals;for(var t in e){var n=e[t];if(n.connectors.length>0&&n.isMappedOver())return!0}return!1},_connectedMappedTerminals:function(e){var t=[];return r.each(e,function(e,n){n.mapOver().isCollection&&n.connectors.length>0&&t.push(n)}),t},mappedInputTerminals:function(){return this._mappedTerminals(this.input_terminals)},_mappedTerminals:function(e){var t=[];return r.each(e,function(e,n){n.mapOver().isCollection&&t.push(n)}),t},hasMappedOverInputTerminals:function(){var e=!1;return i.each(this.input_terminals,function(t){t.mapOver().isCollection&&(e=!0)}),e},redraw:function(){r.each(this.input_terminals,function(e,t){t.redraw()}),r.each(this.output_terminals,function(e,t){t.redraw()})},clone:function(){var e=this,t={name:this.name,label:this.label,annotation:this.annotation,post_job_actions:this.post_job_actions},n=this.app.workflow.create_node(this.type,this.name,this.content_id);s.default.request({type:"POST",url:Galaxy.root+"api/workflows/build_module",data:{type:this.type,tool_id:this.content_id,inputs:this.tool_state},success:function(i){var r=Object.assign({},i,t);n.init_field_data(r),n.update_field_data(r),e.app.workflow.activate_node(n)}})},destroy:function(){r.each(this.input_terminals,function(e,t){t.destroy()}),r.each(this.output_terminals,function(e,t){t.destroy()}),this.app.workflow.remove_node(this),r(this.element).remove()},make_active:function(){r(this.element).addClass("toolForm-active")},make_inactive:function(){var e=this.element.get(0);!function(t){t.removeChild(e),t.appendChild(e)}(e.parentNode),r(e).removeClass("toolForm-active")},init_field_data:function(e){e.type&&(this.type=e.type),this.name=e.name,this.config_form=e.config_form,this.tool_version=this.config_form&&this.config_form.version,this.tool_state=e.tool_state,this.errors=e.errors,this.tooltip=e.tooltip?e.tooltip:"",this.annotation=e.annotation,this.post_job_actions=e.post_job_actions?e.post_job_actions:{},this.label=e.label,this.uuid=e.uuid,this.workflow_outputs=e.workflow_outputs?e.workflow_outputs:[];var t=this,n=new c.default({el:this.element[0],node:t});t.nodeView=n,r.each(e.data_inputs,function(e,t){n.addDataInput(t)}),e.data_inputs.length>0&&e.data_outputs.length>0&&n.addRule(),r.each(e.data_outputs,function(e,t){n.addDataOutput(t)}),n.render(),this.app.workflow.node_changed(this,!0)},update_field_data:function(e){var t=this,n=t.nodeView,a=[];if(r.each(n.outputViews,function(t,n){var r=n.output.name,o=e.data_outputs,s=!1;i.each(o,function(e){e.name==r&&(s=!0)}),!1===s&&a.push(r)}),i.each(a,function(e){i.each(n.outputViews[e].terminalElement.terminal.connectors,function(e){e&&e.destroy()}),n.outputViews[e].remove(),delete n.outputViews[e],delete t.output_terminals[e]}),r.each(t.workflow_outputs,function(e,n){n&&!t.output_terminals[n.output_name]&&t.workflow_outputs.splice(e,1)}),r.each(e.data_outputs,function(e,i){n.outputViews[i.name]?(t.output_terminals[i.name].datatypes=i.extensions,t.output_terminals[i.name].destroyInvalidConnections()):n.addDataOutput(i)}),this.tool_state=e.tool_state,this.config_form=e.config_form,this.tool_version=this.config_form&&this.config_form.version,this.errors=e.errors,this.annotation=e.annotation,this.label=e.label,"post_job_actions"in e){var o=e.post_job_actions;this.post_job_actions=o||{}}t.nodeView.renderToolErrors();var s=n.$("div.inputs"),l=n.newInputsDiv(),c={};i.each(e.data_inputs,function(e){var 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n=!0;t||(t=this.$(".inputs"),n=!1);var i=this.terminalViews[e.name],r="dataset_collection"==e.input_type?l.default.InputCollectionTerminalView:l.default.InputTerminalView;if(!i||i instanceof r||(i.el.terminal.destroy(),i=null),i){var a=i.el.terminal;a.update(e),a.destroyInvalidConnections()}else i=new r({node:this.node,input:e});this.terminalViews[e.name]=i;var o=i.el,s=new d.default.DataInputView({terminalElement:o,input:e,nodeView:this,skipResize:n}),c=s.$el;return t.append(c.prepend(i.terminalElements())),i},addDataOutput:function(e){var t=e.collection?l.default.OutputCollectionTerminalView:l.default.OutputTerminalView,n=new t({node:this.node,output:e}),i=new d.default.DataOutputView({output:e,terminalElement:n.el,nodeView:this});this.outputViews[e.name]=i,this.tool_body.append(i.$el.append(n.terminalElements()))},redrawWorkflowOutputs:function(){o.each(this.outputViews,function(e){e.redrawWorkflowOutput()})},updateDataOutput:function(e){this.node.output_terminals[e.name].update(e)}})}).call(t,n(2),n(0))},function(e,t,n){"use strict";(function(e,i,r){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=n(308),s=a(o),l=n(137),c=a(l);window.workflow_globals=window.workflow_globals||{};var d=e.View.extend({tagName:"div",className:"fa-icon-button fa fa-folder-o",initialize:function(e){this.$el.tooltip({delay:500,title:"Run tool in parallel over 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t=e.node,n=e.input,i=n.name,r=this.terminalForInput(n);r.multiple||this.setupMappingView(r),this.el.terminal=r,r.node=t,r.name=i,t.input_terminals[i]=r},events:{dropinit:"onDropInit",dropstart:"onDropStart",dropend:"onDropEnd",drop:"onDrop",hover:"onHover"},onDropInit:function(e,t){var n=this.el.terminal;return r(t.drag).hasClass("output-terminal")&&n.canAccept(t.drag.terminal)},onDropStart:function(e,t){t.proxy.terminal&&(t.proxy.terminal.connectors[0].inner_color="#BBFFBB")},onDropEnd:function(e,t){t.proxy.terminal&&(t.proxy.terminal.connectors[0].inner_color="#FFFFFF")},onDrop:function(e,t){var n=this.el.terminal;new c.default(t.drag.terminal,n).redraw()},onHover:function(){var e=this.el,t=e.terminal;if(t.connectors.length>0){var n=r("<div class='callout'></div>").css({display:"none"}).appendTo("body").append(r("<div class='button'></div>").append(r("<div/>").addClass("fa-icon-button fa 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e=r(t.proxy).offsetParent().offset(),n=t.offsetX-e.left,i=t.offsetY-e.top;r(t.proxy).css({left:n,top:i}),t.proxy.terminal.redraw(),window.workflow_globals.canvas_manager.update_viewport_overlay()};n(),r("#canvas-container").get(0).scroll_panel.test(e,n)},onDragStart:function(e,t){r(t.available).addClass("input-terminal-active"),window.workflow_globals.workflow.check_changes_in_active_form();var n=r('<div class="drag-terminal" style="position: absolute;"></div>').appendTo("#canvas-container").get(0);n.terminal=new s.default.OutputTerminal({element:n});var i=new c.default;return i.dragging=!0,i.connect(this.el.terminal,n.terminal),n},onDragEnd:function(e,t){var n=t.proxy.terminal.connectors[0];n&&n.destroy(),r(t.proxy).remove(),r(t.available).removeClass("input-terminal-active"),r("#canvas-container").get(0).scroll_panel.stop()}}),_=m.extend({terminalMappingClass:s.default.TerminalMapping,terminalMappingViewClass:d,terminalForOutput:function(e){var t=e.extensions;return new s.default.OutputTerminal({element:this.el,datatypes:t})}}),v=m.extend({terminalMappingClass:s.default.TerminalMapping,terminalMappingViewClass:d,terminalForOutput:function(e){var t=e.collection_type,n=e.collection_type_source;return new s.default.OutputCollectionTerminal({element:this.el,collection_type:t,collection_type_source:n,datatypes:e.extensions})}});t.default={InputTerminalView:p,OutputTerminalView:_,InputCollectionTerminalView:g,OutputCollectionTerminalView:v}}).call(t,n(2),n(1),n(0))},function(e,t,n){"use strict";(function(e,n,i){function r(e){this.collectionType=e,this.isCollection=!0,this.rank=e.split(":").length}Object.defineProperty(t,"__esModule",{value:!0}),window.workflow_globals=window.workflow_globals||{};var a={isCollection:!1,canMatch:function(){return!1},canMapOver:function(){return!1},toString:function(){return"NullCollectionType[]"},append:function(e){return e},equal:function(e){return e===this}},o={isCollection:!0,canMatch:function(e){return a!==e},canMapOver:function(){return!1},toString:function(){return"AnyCollectionType[]"},append:function(){throw"Cannot append to ANY_COLLECTION_TYPE_DESCRIPTION"},equal:function(e){return e===this}};e.extend(r.prototype,{append:function(e){return e===a?this:e===o?e:new r(this.collectionType+":"+e.collectionType)},canMatch:function(e){return e!==a&&(e===o||e.collectionType==this.collectionType)},canMapOver:function(e){if(e===a)return!1;if(e===o)return!1;if(this.rank<=e.rank)return!1;var t=e.collectionType;return this._endsWith(this.collectionType,t)},effectiveMapOver:function(e){var t=e.collectionType;return new r(this.collectionType.substring(0,this.collectionType.length-t.length-1))},equal:function(e){return e.collectionType==this.collectionType},toString:function(){return"CollectionType["+this.collectionType+"]"},_endsWith:function(e,t){return-1!==e.indexOf(t,e.length-t.length)}});var s=n.Model.extend({initialize:function(e){this.mapOver=e.mapOver||a,this.terminal=e.terminal,this.terminal.terminalMapping=this},disableMapOver:function(){this.setMapOver(a)},setMapOver:function(e){this.mapOver=e,this.trigger("change")}}),l=n.Model.extend({initialize:function(e){this.element=e.element,this.connectors=[]},connect:function(e){this.connectors.push(e),this.node&&this.node.markChanged()},disconnect:function(t){this.connectors.splice(e.inArray(t,this.connectors),1),this.node&&(this.node.markChanged(),this.resetMappingIfNeeded())},redraw:function(){e.each(this.connectors,function(e,t){t.redraw()})},destroy:function(){e.each(this.connectors.slice(),function(e,t){t.destroy()})},destroyInvalidConnections:function(){i.each(this.connectors,function(e){e&&e.destroyIfInvalid()})},setMapOver:function(e){this.multiple||this.mapOver().equal(e)||(this.terminalMapping.setMapOver(e),i.each(this.node.output_terminals,function(t){t.setMapOver(e)}))},mapOver:function(){return this.terminalMapping?this.terminalMapping.mapOver:a},isMappedOver:function(){return this.terminalMapping&&this.terminalMapping.mapOver.isCollection},resetMapping:function(){this.terminalMapping.disableMapOver()},resetMappingIfNeeded:function(){}}),c=l.extend({initialize:function(e){l.prototype.initialize.call(this,e),this.datatypes=e.datatypes},resetMappingIfNeeded:function(){this.node.hasConnectedOutputTerminals()||this.node.hasConnectedMappedInputTerminals()||i.each(this.node.mappedInputTerminals(),function(e){e.resetMappingIfNeeded()}),!this.node.hasMappedOverInputTerminals()&&this.resetMapping()},resetMapping:function(){this.terminalMapping.disableMapOver(),i.each(this.connectors,function(e){var t=e.handle2;t&&(t.resetMappingIfNeeded(),e.destroyIfInvalid())})}}),d=l.extend({initialize:function(e){l.prototype.initialize.call(this,e),this.update(e.input)},canAccept:function(e){return!this._inputFilled()&&this.attachable(e)},resetMappingIfNeeded:function(){this.mapOver().isCollection&&((this.node.hasConnectedMappedInputTerminals()||!this.node.hasConnectedOutputTerminals())&&this.resetMapping())},resetMapping:function(){this.terminalMapping.disableMapOver(),this.node.hasMappedOverInputTerminals()||i.each(this.node.output_terminals,function(e){e.resetMapping()})},connected:function(){return 0!==this.connectors.length},_inputFilled:function(){return!!this.connected()&&(!this.multiple||!!this._collectionAttached())},_collectionAttached:function(){if(this.connected()){var e=this.connectors[0].handle1;return!!e&&!!(e.isCollection||e.isMappedOver()||e.datatypes.indexOf("input_collection")>0)}return!1},_mappingConstraints:function(){if(!this.node)return[];var e=this.mapOver();if(e.isCollection)return[e];var t=[];return this.node.hasConnectedOutputTerminals()?t.push(i.first(i.values(this.node.output_terminals)).mapOver()):i.each(this.node.connectedMappedInputTerminals(),function(e){t.push(e.mapOver())}),t},_producesAcceptableDatatype:function(e){for(var t in this.datatypes){var n=this.datatypes[t];if("input"==n)return!0;var i=[];if(i=i.concat(e.datatypes),e.node.post_job_actions)for(var r in e.node.post_job_actions){var a=e.node.post_job_actions[r];"ChangeDatatypeAction"!=a.action_type||""!==a.output_name&&a.output_name!=e.name||!a.action_arguments||i.push(a.action_arguments.newtype)}for(var o in i){var s=i[o];if("input"==s||"_sniff_"==s||"input_collection"==s||window.workflow_globals.app.isSubType(i[o],n))return!0}}return!1},_otherCollectionType:function(e){var t=a;e.isCollection&&(t=e.collectionType);var n=e.mapOver();return n.isCollection&&(t=n.append(t)),t}}),u=d.extend({update:function(e){this.datatypes=e.extensions,this.multiple=e.multiple,this.collection=!1},connect:function(e){d.prototype.connect.call(this,e);var t=e.handle1;if(t){var n=this._otherCollectionType(t);n.isCollection&&this.setMapOver(n)}},attachable:function(e){var t=this._otherCollectionType(e),n=this.mapOver();if(t.isCollection){if(this.multiple)return!(this.connected()&&!this._collectionAttached())&&(1==t.rank&&this._producesAcceptableDatatype(e));if(n.isCollection&&n.canMatch(t))return this._producesAcceptableDatatype(e);return!!this._mappingConstraints().every(i.bind(t.canMatch,t))&&this._producesAcceptableDatatype(e)}return!n.isCollection&&this._producesAcceptableDatatype(e)}}),h=d.extend({update:function(e){this.multiple=!1,this.collection=!0,this.datatypes=e.extensions;var t=[];e.collection_types?i.each(e.collection_types,function(e){t.push(new r(e))}):t.push(o),this.collectionTypes=t},connect:function(e){d.prototype.connect.call(this,e);var t=e.handle1;if(t){var n=this._effectiveMapOver(t);this.setMapOver(n)}},_effectiveMapOver:function(e){var t=this.collectionTypes,n=this._otherCollectionType(e);if(!i.some(t,function(e){return e.canMatch(n)}))for(var r in t){var o=t[r];if(n.canMapOver(o)){var s=n.effectiveMapOver(o);if(s!=a)return s}}return a},_effectiveCollectionTypes:function(){var e=this.mapOver();return i.map(this.collectionTypes,function(t){return e.append(t)})},attachable:function(e){var t=this._otherCollectionType(e);if(t.isCollection){var n=this._effectiveCollectionTypes(),r=this.mapOver();if(i.some(n,function(e){return e.canMatch(t)}))return this._producesAcceptableDatatype(e);if(r.isCollection)return!1;if(i.some(this.collectionTypes,function(e){return t.canMapOver(e)})){var a=this._effectiveMapOver(e);if(!a.isCollection)return!1;if(this._mappingConstraints().every(a.canMatch))return this._producesAcceptableDatatype(e)}}return!1}}),f=l.extend({initialize:function(e){if(l.prototype.initialize.call(this,e),this.datatypes=e.datatypes,e.collection_type)this.collectionType=new r(e.collection_type);else{e.collection_type_source||console.log("Warning: No collection type or collection type source defined."),this.collectionType=o}this.isCollection=!0},update:function(e){var t;if(e.collection_type)t=new r(e.collection_type);else{e.collection_type_source||console.log("Warning: No collection type or collection type source defined."),t=o}t.collectionType!=this.collectionType.collectionType&&i.each(this.connectors,function(e){e.destroy()}),this.collectionType=t}});t.default={InputTerminal:u,OutputTerminal:c,InputCollectionTerminal:h,OutputCollectionTerminal:f,TerminalMapping:s,CollectionTypeDescription:r,NULL_COLLECTION_TYPE_DESCRIPTION:a,ANY_COLLECTION_TYPE_DESCRIPTION:o}}).call(t,n(0),n(2),n(1))},function(e,t,n){"use strict";(function(e,n){Object.defineProperty(t,"__esModule",{value:!0}),window.workflow_globals=window.workflow_globals||{};var i=e.View.extend({className:"form-row dataRow input-data-row",initialize:function(e){this.input=e.input,this.nodeView=e.nodeView,this.terminalElement=e.terminalElement,this.$el.attr("name",this.input.name).html(this.input.label),e.skipResize||(this.$el.css({position:"absolute",left:-1e3,top:-1e3,display:"none"}),n("body").append(this.el),this.nodeView.updateMaxWidth(this.$el.outerWidth()),this.$el.css({position:"",left:"",top:"",display:""}),this.$el.remove())}}),r=e.View.extend({className:"form-row dataRow",initialize:function(e){this.output=e.output,this.terminalElement=e.terminalElement,this.nodeView=e.nodeView;var t=this.output,i=t.name,r=this.nodeView.node;if(t.extensions.indexOf("input")>=0||t.extensions.indexOf("input_collection")>=0||(i=i+" ("+t.extensions.join(", ")+")"),this.$el.html(i),this.calloutView=null,["tool","subworkflow"].indexOf(r.type)>=0){var o=new a({label:i,output:t,node:r});this.calloutView=o,this.$el.append(o.el),this.$el.hover(function(){o.hoverImage()},function(){o.resetImage()})}this.$el.css({position:"absolute",left:-1e3,top:-1e3,display:"none"}),n("body").append(this.el),this.nodeView.updateMaxWidth(this.$el.outerWidth()+17),this.$el.css({position:"",left:"",top:"",display:""}).detach()},redrawWorkflowOutput:function(){this.calloutView&&this.calloutView.resetImage()}}),a=e.View.extend({tagName:"div",initialize:function(e){this.label=e.label,this.node=e.node,this.output=e.output;var t=this,i=this.node;this.$el.attr("class","callout "+this.label).css({display:"none"}).append(n("<div class='buttons'></div>").append(n("<img/>").attr("src",Galaxy.root+"static/images/fugue/asterisk-small-outline.png").click(function(){var e=t.output.name;i.isWorkflowOutput(e)?(i.removeWorkflowOutput(e),t.$("img").attr("src",Galaxy.root+"static/images/fugue/asterisk-small-outline.png")):(i.addWorkflowOutput(e),t.$("img").attr("src",Galaxy.root+"static/images/fugue/asterisk-small.png")),window.workflow_globals.workflow.has_changes=!0,window.workflow_globals.canvas_manager.draw_overview()}))).tooltip({delay:500,title:"Mark dataset as a workflow output. All unmarked datasets will be hidden."}),this.$el.css({top:"50%",margin:"-8px 0px 0px 0px",right:8}),this.$el.show(),this.resetImage()},resetImage:function(){this.node.isWorkflowOutput(this.output.name)?this.$("img").attr("src",Galaxy.root+"static/images/fugue/asterisk-small.png"):this.$("img").attr("src",Galaxy.root+"static/images/fugue/asterisk-small-outline.png")},hoverImage:function(){this.$("img").attr("src",Galaxy.root+"static/images/fugue/asterisk-small-yellow.png")}});t.default={DataInputView:i,DataOutputView:r}}).call(t,n(2),n(0))},function(e,t,n){"use strict";(function(e,i){function r(e){return e&&e.__esModule?e:{default:e}}function a(e){var t=e.model.attributes,n=t.workflow,i=t.node;t.inputs.unshift({type:"text",name:"__annotation",label:"Annotation",fixed:!0,value:i.annotation,area:!0,help:"Add an annotation or notes to this step. Annotations are available when a workflow is viewed."}),t.inputs.unshift({type:"text",name:"__label",label:"Label",value:i.label,help:(0,d.default)("Add a step label."),fixed:!0,onchange:function(t){var r=!1;for(var a in n.nodes){var o=n.nodes[a];if(o.label&&o.label==t&&o.id!=i.id){r=!0;break}}var s=e.data.match("__label");e.element_list[s].model.set("error_text",r&&"Duplicate label. Please fix this before saving the workflow."),e.trigger("change")}})}function o(e,t,n,i){var r=i.node.post_job_actions;t=t||[],t.push(e);for(var a in e.inputs){var s=e.inputs[a];if(s.action){if(s.name="pja__"+n+"__"+s.action,s.pja_arg&&(s.name+="__"+s.pja_arg),s.payload)for(var l in s.payload)s.payload[s.name+"__"+l]=s.payload[l],delete s.payload[l];var c=r[s.action+n];if(c){for(var d in t)t[d].expanded=!0;s.pja_arg?s.value=c.action_arguments&&c.action_arguments[s.pja_arg]||s.value:s.value="true"}}s.inputs&&o(s,t.slice(0),n,i)}}function s(e,t){var n=[],i=[],r=t.datatypes,a=t.node,s=t.workflow;for(var l in r)n.push({0:r[l],1:r[l]});for(l in a.input_terminals)i.push(a.input_terminals[l].name);n.sort(function(e,t){return e.label>t.label?1:e.label<t.label?-1:0}),n.unshift({0:"Sequences",1:"Sequences"}),n.unshift({0:"Roadmaps",1:"Roadmaps"}),n.unshift({0:"Leave unchanged",1:"__empty__"});var c,u={title:"Configure Output: '"+e+"'",type:"section",flat:!0,inputs:[{label:"Label",type:"text",value:(c=a.getWorkflowOutput(e))&&c.label||"",help:"This will provide a short name to describe the output - this must be unique across workflows.",onchange:function(t){s.attemptUpdateOutputLabel(a,e,t)}},{action:"RenameDatasetAction",pja_arg:"newname",label:"Rename dataset",type:"text",value:"",ignore:"",help:'This action will rename the output dataset. Click <a href="https://galaxyproject.org/learn/advanced-workflow/variables/">here</a> for more information. Valid inputs are: <strong>'+i.join(", ")+"</strong>."},{action:"ChangeDatatypeAction",pja_arg:"newtype",label:"Change datatype",type:"select",ignore:"__empty__",value:"__empty__",options:n,help:"This action will change the datatype of the output to the indicated value."},{action:"TagDatasetAction",pja_arg:"tags",label:"Add Tags",type:"text",value:"",ignore:"",help:"This action will set tags for the dataset."},{action:"RemoveTagDatasetAction",pja_arg:"tags",label:"Remove Tags",type:"text",value:"",ignore:"",help:"This action will remove tags for the dataset."},{title:(0,d.default)("Assign columns"),type:"section",flat:!0,inputs:[{action:"ColumnSetAction",pja_arg:"chromCol",label:"Chrom column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"startCol",label:"Start column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"endCol",label:"End column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"strandCol",label:"Strand column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"nameCol",label:"Name column",type:"integer",value:"",ignore:""}],help:"This action will set column assignments in the output dataset. Blank fields are ignored."}]};return o(u,[],e,t),u}function l(e){var t=e.model.attributes,n=t.inputs,i=t.node,r=i.post_job_actions,a=i.output_terminals&&Object.keys(i.output_terminals)[0];if(a){n.push({name:"pja__"+a+"__EmailAction",label:"Email notification",type:"boolean",value:String(Boolean(r["EmailAction"+a])),ignore:"false",help:(0,d.default)("An email notification will be sent when the job has completed."),payload:{host:window.location.host}}),n.push({name:"pja__"+a+"__DeleteIntermediatesAction",label:"Output cleanup",type:"boolean",value:String(Boolean(r["DeleteIntermediatesAction"+a])),ignore:"false",help:"Upon completion of this step, delete non-starred outputs from completed workflow steps if they are no longer required as inputs."});for(var o in i.output_terminals)n.push(s(o,t))}}Object.defineProperty(t,"__esModule",{value:!0});var c=n(3),d=r(c),u=n(5),h=r(u),f=n(13),p=r(f),g=n(79),m=r(g),_=e.View.extend({initialize:function(e){var t=this,n=e.node;this.form=new p.default(h.default.merge(e,{onchange:function(){h.default.request({type:"POST",url:Galaxy.root+"api/workflows/build_module",data:{id:n.id,type:n.type,content_id:n.content_id,inputs:t.form.data.create()},success:function(e){n.update_field_data(e)}})}})),a(this.form),this.form.render()}}),v=e.View.extend({initialize:function(e){var t=this,n=e.node;this.form=new m.default(h.default.merge(e,{text_enable:"Set in Advance",text_disable:"Set at Runtime",narrow:!0,initial_errors:!0,cls:"ui-portlet-narrow",initialmodel:function(e,n){t._customize(n),e.resolve()},buildmodel:function(e,t){t.model.get("postchange")(e,t)},postchange:function(e,r){var a=r.model.attributes,o={tool_id:a.id,tool_version:a.version,type:"tool",inputs:i.extend(!0,{},r.data.create())};Galaxy.emit.debug("tool-form-workflow::postchange()","Sending current state.",o),h.default.request({type:"POST",url:Galaxy.root+"api/workflows/build_module",data:o,success:function(i){r.model.set(i.config_form),t._customize(r),r.update(i.config_form),r.errors(i.config_form),n.update_field_data(i),Galaxy.emit.debug("tool-form-workflow::postchange()","Received new model.",i),e.resolve()},error:function(t){Galaxy.emit.debug("tool-form-workflow::postchange()","Refresh request failed.",t),e.reject()}})}}))},_customize:function(e){var t=e.model.attributes;h.default.deepeach(t.inputs,function(e){e.type&&(-1!=["data","data_collection"].indexOf(e.type)?(e.type="hidden",e.info="Data input '"+e.name+"' ("+h.default.textify(e.extensions)+")",e.value={__class__:"RuntimeValue"}):e.fixed||(e.collapsible_value={__class__:"RuntimeValue"},e.is_workflow=e.options&&0===e.options.length||-1!=["integer","float"].indexOf(e.type)))}),h.default.deepeach(t.inputs,function(e){"conditional"===e.type&&(e.test_param.collapsible_value=void 0)}),l(e),a(e)}});t.default={Default:_,Tool:v}}).call(t,n(2),n(0))},function(e,t,n){"use strict";(function(e,i){function r(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=n(3),s=a(o),l=n(1),c=r(l),d=n(312),u=r(d),h=n(23),f=a(h),p=n(5),g=a(p),m=n(46),_=a(m),v=n(44),y=a(v);n(75);var b=e.Model.extend({is_visible:function(e,t){var n=e.getBoundingClientRect(),r=i("svg")[0].getBoundingClientRect();return!(n.right<0||n.left>r.right||n.bottom<0||n.top>r.bottom)}}),w={drawTicks:function(e,t,n,i,r){var a=e.append("g").selectAll("g").data(t).enter().append("g").selectAll("g").data(n).enter().append("g").attr("class","tick").attr("transform",function(e){return"rotate("+(180*e.angle/Math.PI-90)+")translate("+e.radius+",0)"}),o=[],s=[],l=function(e){return e.angle>Math.PI?"end":null};return r?(o=[0,0,0,-4],s=[4,0,"",".35em"],l=null):(o=[1,0,4,0],s=[0,4,".35em",""]),a.append("line").attr("x1",o[0]).attr("y1",o[1]).attr("x2",o[2]).attr("y1",o[3]).style("stroke","#000"),a.append("text").attr("x",s[0]).attr("y",s[1]).attr("dx",s[2]).attr("dy",s[3]).attr("text-anchor",l).attr("transform",i).text(function(e){return e.label})},formatNum:function(e,t){if(void 0===t&&(t=2),null===e)return null;var n=null;if(Math.abs(e)<1)n=e.toPrecision(t);else{var i=Math.round(e.toPrecision(t));e=Math.abs(e),e<1e3?n=i:e<1e6?n=Math.round((i/1e3).toPrecision(3)).toFixed(0)+"K":e<1e9&&(n=Math.round((i/1e6).toPrecision(3)).toFixed(0)+"M")}return n}},x=e.Model.extend({}),k=e.View.extend({className:"circster",initialize:function(e){this.genome=e.genome,this.label_arc_height=50,this.scale=1,this.circular_views=null,this.chords_views=null,this.model.get("drawables").on("add",this.add_track,this),this.model.get("drawables").on("remove",this.remove_track,this);var t=this.model.get("config");t.get("arc_dataset_height").on("change:value",this.update_track_bounds,this),t.get("track_gap").on("change:value",this.update_track_bounds,this)},get_circular_tracks:function(){return this.model.get("drawables").filter(function(e){return"DiagonalHeatmapTrack"!==e.get("track_type")})},get_chord_tracks:function(){return this.model.get("drawables").filter(function(e){return"DiagonalHeatmapTrack"===e.get("track_type")})},get_tracks_bounds:function(){var e=this.get_circular_tracks(),t=this.model.get("config").get_value("arc_dataset_height"),n=this.model.get("config").get_value("track_gap"),i=Math.min(this.$el.width(),this.$el.height())-20,r=i/2-e.length*(t+n)+n-this.label_arc_height,a=u.range(r,i/2,t+n);return c.map(a,function(e){return[e,e+t]})},render:function(){var e=this,t=e.$el.width(),n=e.$el.height(),i=this.get_circular_tracks(),r=this.get_chord_tracks(),a=e.model.get("config").get_value("total_gap"),o=this.get_tracks_bounds(),s=u.select(e.$el[0]).append("svg").attr("width",t).attr("height",n).attr("pointer-events","all").append("svg:g").call(u.behavior.zoom().on("zoom",function(){var t=d.event.scale;s.attr("transform","translate("+d.event.translate+") scale("+t+")"),e.scale!==t&&(e.zoom_drag_timeout&&clearTimeout(e.zoom_drag_timeout),e.zoom_drag_timeout=setTimeout(function(){},400))})).attr("transform","translate("+t/2+","+n/2+")").append("svg:g").attr("class","tracks");this.circular_views=i.map(function(t,n){var i=new T({el:s.append("g")[0],track:t,radius_bounds:o[n],genome:e.genome,total_gap:a});return i.render(),i}),this.chords_views=r.map(function(t){var n=new E({el:s.append("g")[0],track:t,radius_bounds:o[0],genome:e.genome,total_gap:a});return n.render(),n});var l=this.circular_views[this.circular_views.length-1].radius_bounds[1],c=[l,l+this.label_arc_height];this.label_track_view=new C({el:s.append("g")[0],track:new x,radius_bounds:c,genome:e.genome,total_gap:a}),this.label_track_view.render()},add_track:function(e){var t=this.model.get("config").get_value("total_gap");if("DiagonalHeatmapTrack"===e.get("track_type")){var n=this.circular_views[0].radius_bounds,i=new E({el:u.select("g.tracks").append("g")[0],track:e,radius_bounds:n,genome:this.genome,total_gap:t});i.render(),this.chords_views.push(i)}else{var r=this.get_tracks_bounds();c.each(this.circular_views,function(e,t){e.update_radius_bounds(r[t])}),c.each(this.chords_views,function(e){e.update_radius_bounds(r[0])});var a=this.circular_views.length,o=new T({el:u.select("g.tracks").append("g")[0],track:e,radius_bounds:r[a],genome:this.genome,total_gap:t});o.render(),this.circular_views.push(o)}},remove_track:function(e,t,n){var i=this.circular_views[n.index];this.circular_views.splice(n.index,1),i.$el.remove();var r=this.get_tracks_bounds();c.each(this.circular_views,function(e,t){e.update_radius_bounds(r[t])})},update_track_bounds:function(){var e=this.get_tracks_bounds();c.each(this.circular_views,function(t,n){t.update_radius_bounds(e[n])}),c.each(this.chords_views,function(t){t.update_radius_bounds(e[0])})}}),M=e.View.extend({tagName:"g",initialize:function(e){this.bg_stroke="#ddd",this.loading_bg_fill="#ffc",this.bg_fill="#ddd",this.total_gap=e.total_gap,this.track=e.track,this.radius_bounds=e.radius_bounds,this.genome=e.genome,this.chroms_layout=this._chroms_layout(),this.data_bounds=[],this.scale=1,this.parent_elt=u.select(this.$el[0])},get_fill_color:function(){var e=this.track.get("config").get_value("block_color");return e||(e=this.track.get("config").get_value("color")),e},render:function(){var e=this.parent_elt,t=this.chroms_layout,n=u.svg.arc().innerRadius(this.radius_bounds[0]).outerRadius(this.radius_bounds[1]),r=e.selectAll("g").data(t).enter().append("svg:g"),a=r.append("path").attr("d",n).attr("class","chrom-background").style("stroke",this.bg_stroke).style("fill",this.loading_bg_fill);a.append("title").text(function(e){return e.data.chrom});var o=this,s=o.track.get("data_manager"),l=!s||s.data_is_ready();i.when(l).then(function(){i.when(o._render_data(e)).then(function(){a.style("fill",o.bg_fill),o.render_labels()})})},render_labels:function(){},update_radius_bounds:function(e){this.radius_bounds=e;var t=u.svg.arc().innerRadius(this.radius_bounds[0]).outerRadius(this.radius_bounds[1]);this.parent_elt.selectAll("g>path.chrom-background").transition().duration(1e3).attr("d",t),this._transition_chrom_data(),this._transition_labels()},update_scale:function(e){var t=this.scale;if(this.scale=e,!(e<=t)){var n=this,r=new b;return this.parent_elt.selectAll("path.chrom-data").filter(function(e,t){return r.is_visible(this)}).each(function(t,r){var a,o=u.select(this),s=o.attr("chrom"),l=n.genome.get_chrom_region(s),d=n.track.get("data_manager");d.can_get_more_detailed_data(l)&&(a=n.track.get("data_manager").get_more_detailed_data(l,"Coverage",0,e),i.when(a).then(function(e){o.remove(),n._update_data_bounds();var t=c.find(n.chroms_layout,function(e){return e.data.chrom===s}),i=n.get_fill_color();n._render_chrom_data(n.parent_elt,t,e).style("stroke",i).style("fill",i)}))}),n}},_transition_chrom_data:function(){var e=this.track,t=this.chroms_layout,n=this.parent_elt.selectAll("g>path.chrom-data");if(n[0].length>0){var r=this;i.when(e.get("data_manager").get_genome_wide_data(this.genome)).then(function(i){var a=c.reject(c.map(i,function(e,n){var i=null,a=r._get_path_function(t[n],e);return a&&(i=a(e.data)),i}),function(e){return null===e}),o=e.get("config").get_value("color");n.each(function(e,t){u.select(this).transition().duration(1e3).style("stroke",o).style("fill",o).attr("d",a[t])})})}},_transition_labels:function(){},_update_data_bounds:function(e){this.data_bounds=e||this.get_data_bounds(this.track.get("data_manager").get_genome_wide_data(this.genome)),this._transition_chrom_data()},_render_data:function(e){var t=this,n=this.chroms_layout,r=this.track,a=i.Deferred();return i.when(r.get("data_manager").get_genome_wide_data(this.genome)).then(function(i){t.data_bounds=t.get_data_bounds(i),r.get("config").set_value("min_value",t.data_bounds[0],{silent:!0}),r.get("config").set_value("max_value",t.data_bounds[1],{silent:!0});var o=c.zip(n,i);c.each(o,function(n){var i=n[0],r=n[1];return t._render_chrom_data(e,i,r)});var s=t.get_fill_color();t.parent_elt.selectAll("path.chrom-data").style("stroke",s).style("fill",s),a.resolve(e)}),a},_render_chrom_data:function(e,t,n){},_get_path_function:function(e,t){},_chroms_layout:function(){var e=this.genome.get_chroms_info(),t=u.layout.pie().value(function(e){return e.len}).sort(null),n=t(e),i=2*Math.PI*this.total_gap/e.length;return c.map(n,function(e,t){var n=e.endAngle-i;return e.endAngle=n>e.startAngle?n:e.startAngle,e})}}),C=M.extend({initialize:function(e){M.prototype.initialize.call(this,e),this.innerRadius=this.radius_bounds[0],this.radius_bounds[0]=this.radius_bounds[1],this.bg_stroke="#fff",this.bg_fill="#fff",this.min_arc_len=.05},_render_data:function(e){var t=this,n=e.selectAll("g");n.selectAll("path").attr("id",function(e){return"label-"+e.data.chrom}),n.append("svg:text").filter(function(e){return e.endAngle-e.startAngle>t.min_arc_len}).attr("text-anchor","middle").append("svg:textPath").attr("class","chrom-label").attr("xlink:href",function(e){return"#label-"+e.data.chrom}).attr("startOffset","25%").text(function(e){return e.data.chrom});var i=function(e){var n=(e.endAngle-e.startAngle)/e.value,i=u.range(0,e.value,25e6).map(function(i,r){return{radius:t.innerRadius,angle:i*n+e.startAngle,label:0===r?0:r%3?null:t.formatNum(i)}});return i.length<4&&(i[i.length-1].label=t.formatNum(Math.round((i[i.length-1].angle-e.startAngle)/n))),i},r=function(e){return e.angle>Math.PI?"rotate(180)translate(-16)":null},a=c.filter(this.chroms_layout,function(e){return e.endAngle-e.startAngle>t.min_arc_len});this.drawTicks(this.parent_elt,a,i,r)}});c.extend(C.prototype,w);var S=M.extend({initialize:function(e){M.prototype.initialize.call(this,e);var t=this.track.get("config");t.get("min_value").on("change:value",this._update_min_max,this),t.get("max_value").on("change:value",this._update_min_max,this),t.get("color").on("change:value",this._transition_chrom_data,this)},_update_min_max:function(){var e=this.track.get("config"),t=[e.get_value("min_value"),e.get_value("max_value")];this._update_data_bounds(t),this.parent_elt.selectAll(".min_max").text(function(e,n){return t[n]})},_quantile:function(e,t){return e.sort(u.ascending),u.quantile(e,t)},_render_chrom_data:function(e,t,n){var i=this._get_path_function(t,n);return i?e.datum(n.data).append("path").attr("class","chrom-data").attr("chrom",t.data.chrom).attr("d",i):null},_get_path_function:function(e,t){if("string"==typeof t||!t.data||0===t.data.length)return null;var n=u.scale.linear().domain(this.data_bounds).range(this.radius_bounds).clamp(!0),i=u.scale.linear().domain([0,t.data.length]).range([e.startAngle,e.endAngle]),r=u.svg.line.radial().interpolate("linear").radius(function(e){return n(e[1])}).angle(function(e,t){return i(t)});return u.svg.area.radial().interpolate(r.interpolate()).innerRadius(n(0)).outerRadius(r.radius()).angle(r.angle())},render_labels:function(){var e=this,t=function(){return"rotate(90)"},n=this.drawTicks(this.parent_elt,[this.chroms_layout[0]],this._data_bounds_ticks_fn(),t,!0).classed("min_max",!0);c.each(n,function(t){i(t).click(function(){new _.default.ConfigSettingCollectionView({collection:e.track.get("config")}).render_in_modal("Configure Track")})})},_transition_labels:function(){if(0!==this.data_bounds.length){var e=this,t=c.filter(this.chroms_layout,function(e){return e.endAngle-e.startAngle>.08}),n=c.filter(t,function(e,t){return t%3==0}),i=c.flatten(c.map(n,function(t){return e._data_bounds_ticks_fn()(t)}));this.parent_elt.selectAll("g.tick").data(i).transition().attr("transform",function(e){return"rotate("+(180*e.angle/Math.PI-90)+")translate("+e.radius+",0)"})}},_data_bounds_ticks_fn:function(){var e=this;return function(t){return[{radius:e.radius_bounds[0],angle:t.startAngle,label:e.formatNum(e.data_bounds[0])},{radius:e.radius_bounds[1],angle:t.startAngle,label:e.formatNum(e.data_bounds[1])}]}},get_data_bounds:function(e){}});c.extend(S.prototype,w);var T=S.extend({get_data_bounds:function(e){var t=c.flatten(c.map(e,function(e){return e?c.map(e.data,function(e){return parseInt(e[1],10)||0}):0}));return[c.min(t),this._quantile(t,.98)||c.max(t)]}}),E=M.extend({render:function(){var e=this;i.when(e.track.get("data_manager").data_is_ready()).then(function(){i.when(e.track.get("data_manager").get_genome_wide_data(e.genome)).then(function(t){var n=[],i=e.genome.get_chroms_info();c.each(t,function(t,r){var a=i[r].chrom,o=c.map(t.data,function(t){var n=e._get_region_angle(a,t[1]),i=e._get_region_angle(t[3],t[4]);return{source:{startAngle:n,endAngle:n+.01},target:{startAngle:i,endAngle:i+.01}}});n=n.concat(o)}),e.parent_elt.append("g").attr("class","chord").selectAll("path").data(n).enter().append("path").style("fill",e.get_fill_color()).attr("d",u.svg.chord().radius(e.radius_bounds[0])).style("opacity",1)})})},update_radius_bounds:function(e){this.radius_bounds=e,this.parent_elt.selectAll("path").transition().attr("d",u.svg.chord().radius(this.radius_bounds[0]))},_get_region_angle:function(e,t){var n=c.find(this.chroms_layout,function(t){return t.data.chrom===e});return n.endAngle-(n.endAngle-n.startAngle)*(n.data.len-t)/n.data.len}}),j=e.View.extend({initialize:function(){g.default.cssLoadFile("static/style/circster.css");var e=new f.default.Genome(window.galaxy_config.app.genome),t=new f.default.GenomeVisualization(window.galaxy_config.app.viz_config);t.get("config").add([{key:"arc_dataset_height",label:"Arc Dataset 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20)"),l=(s.selectAll("path.link").data(n.links(a)).enter().append("path").attr("class","link").attr("d",r),s.selectAll("g.node").data(a).enter().append("g").attr("class","node").attr("transform",function(e){return"translate("+e.y+","+e.x+")"}).on("mouseover",function(e){var n=c.pluck(t.model.get_connected_nodes(e),"id");l.filter(function(e){return void 0!==c.find(n,function(t){return t===e.id})}).style("fill","#f00")}).on("mouseout",function(){l.style("fill","#000")}));l.append("circle").attr("r",9),l.append("text").attr("dx",function(e){return e.children?-12:12}).attr("dy",3).attr("text-anchor",function(e){return e.children?"end":"start"}).text(function(e){return e.name})}}}),D=e.View.extend({className:"Sweepster",helpText:"<div><h4>Getting Started</h4><ol><li>Create a parameter tree by using the icons next to the tool's parameter names to add or remove parameters.<li>Adjust the tree by using parameter inputs to select min, max, and number of samples<li>Run the tool with different 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Outputs are in the dataset's history.",{Ok:function(){hide_modal()}})},add_track:function(e){var t=this,n=this.model.get("parameter_tree");t.model.add_track(e);var i=new A({model:e,canvas_manager:t.canvas_manager});return i.on("run_on_dataset",t.run_tool_on_dataset,t),t.track_collection_container.append(i.$el),i.$el.hover(function(){var i=n.get_leaf(e.get("settings").get("values")),r=c.pluck(n.get_connected_nodes(i),"id");u.select(t.tool_param_tree_view.$el[0]).selectAll("g.node").filter(function(e){return void 0!==c.find(r,function(t){return t===e.id})}).style("fill","#f00")},function(){u.select(t.tool_param_tree_view.$el[0]).selectAll("g.node").style("fill","#000")}),e},handle_node_clicks:function(){var e=this,t=this.model.get("parameter_tree"),n=this.model.get("regions");u.select(this.tool_param_tree_view.$el[0]).selectAll("g.node").on("click",function(r,a){var o=e.model.get("tool"),s=e.model.get("dataset"),l=t.get_node_settings(r),d=i.Deferred();l.length>=10?show_modal("Whoa there cowboy!","You clicked on a node to try "+e.model.get("tool").get("name")+" with "+l.length+" different combinations of settings. You can only run 10 jobs at a time.",{Ok:function(){hide_modal(),d.resolve(!1)}}):d.resolve(!0),i.when(d).then(function(t){if(t){var r=c.map(l,function(t){var i=new T({settings:t,regions:n,mode:e.model.get("default_mode")});return e.add_track(i),i});c.each(r,function(t,r){setTimeout(function(){o.set_input_values(t.get("settings").get("values")),i.when(o.rerun(s,n)).then(function(n){var i=n.first(),r=i.get("track_config");r.dataset=i,r.tool=null,r.prefs=e.config.to_key_value_dict();var a=m.default.object_from_template(r,e,null);a.init_for_tool_data(),t.set("track",a)})},1e4*r)})}})})}});t.default={SweepsterVisualization:j,SweepsterVisualizationView:D}}).call(t,n(2),n(0))},function(e,t,n){"use strict";(function(e,i){function r(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=n(5),o=(r(a),n(7)),s=r(o),l=n(4),c=r(l),d=n(18),u=(r(d),n(317)),h=r(u),f=n(319),p=r(f),g=n(321),m=r(g),_=n(322),v=r(_),y=n(138),b=r(y),w=n(323),x=r(w),k=n(324),M=r(k),C=e.Router.extend({initialize:function(){this.routesHit=0,e.history.on("route",function(){this.routesHit++},this),this.bind("route",this.trackPageview)},routes:{"":"libraries","page/:show_page":"libraries_page","library/:library_id/permissions":"library_permissions","folders/:folder_id/permissions":"folder_permissions","folders/:id":"folder_content","folders/:id/page/:show_page":"folder_page","folders/:folder_id/datasets/:dataset_id":"dataset_detail","folders/:folder_id/datasets/:dataset_id/permissions":"dataset_permissions","folders/:folder_id/datasets/:dataset_id/versions/:ldda_id":"dataset_version","folders/:folder_id/download/:format":"download","folders/:folder_id/import/:source":"import_datasets"},back:function(){this.routesHit>1?window.history.back():this.navigate("#",{trigger:!0,replace:!0})},trackPageview:function(){var t=e.history.getFragment();/^\//.test(t)||""==t||(t="/"+t),"undefined"!=typeof ga&&ga("send","pageview",Galaxy.root+"library/list"+t)}}),S=c.default.SessionStorageModel.extend({defaults:{with_deleted:!1,without_restricted:!1,sort_order:"asc",sort_by:"name",library_page_size:20,folder_page_size:15}}),T=e.View.extend({libraryToolbarView:null,libraryListView:null,library_router:null,libraryView:null,folderToolbarView:null,folderListView:null,datasetView:null,initialize:function(){window.Galaxy.config.ga_code&&(!function(e,t,n,i,r,a,o){e.GoogleAnalyticsObject=r,e[r]=e[r]||function(){(e[r].q=e[r].q||[]).push(arguments)},e[r].l=1*new Date,a=t.createElement(n),o=t.getElementsByTagName(n)[0],a.async=1,a.src="//www.google-analytics.com/analytics.js",o.parentNode.insertBefore(a,o)}(window,document,"script",0,"ga"),ga("create",window.Galaxy.config.ga_code,"auto"),ga("send","pageview")),Galaxy.libraries=this,this.preferences=new S({id:"global-lib-prefs"}),this.library_router=new C,this.library_router.on("route:libraries",function(){Galaxy.libraries.libraryToolbarView&&Galaxy.libraries.libraryToolbarView.$el.unbind("click"),Galaxy.libraries.libraryToolbarView=new m.default.LibraryToolbarView,Galaxy.libraries.libraryListView=new p.default.LibraryListView}),this.library_router.on("route:libraries_page",function(e){null===Galaxy.libraries.libraryToolbarView?(Galaxy.libraries.libraryToolbarView=new m.default.LibraryToolbarView,Galaxy.libraries.libraryListView=new p.default.LibraryListView({show_page:e})):Galaxy.libraries.libraryListView.render({show_page:e})}),this.library_router.on("route:folder_content",function(e){Galaxy.libraries.folderToolbarView&&Galaxy.libraries.folderToolbarView.$el.unbind("click"),Galaxy.libraries.folderToolbarView=new v.default.FolderToolbarView({id:e}),Galaxy.libraries.folderListView=new h.default.FolderListView({id:e})}),this.library_router.on("route:folder_page",function(e,t){null===Galaxy.libraries.folderToolbarView?(Galaxy.libraries.folderToolbarView=new v.default.FolderToolbarView({id:e}),Galaxy.libraries.folderListView=new h.default.FolderListView({id:e,show_page:t})):Galaxy.libraries.folderListView.render({id:e,show_page:parseInt(t)})}),this.library_router.on("route:download",function(e,t){0===i("#folder_list_body").find(":checked").length?(s.default.info("You must select at least one dataset to download"),Galaxy.libraries.library_router.navigate("folders/"+e,{trigger:!0,replace:!0})):(Galaxy.libraries.folderToolbarView.download(e,t),Galaxy.libraries.library_router.navigate("folders/"+e,{trigger:!1,replace:!0}))}),this.library_router.on("route:dataset_detail",function(e,t){Galaxy.libraries.datasetView&&Galaxy.libraries.datasetView.$el.unbind("click"),Galaxy.libraries.datasetView=new b.default.LibraryDatasetView({id:t,show_version:!1,show_permissions:!1})}),this.library_router.on("route:dataset_version",function(e,t,n){Galaxy.libraries.datasetView&&Galaxy.libraries.datasetView.$el.unbind("click"),Galaxy.libraries.datasetView=new b.default.LibraryDatasetView({id:t,ldda_id:n,show_version:!0})}),this.library_router.on("route:dataset_permissions",function(e,t){Galaxy.libraries.datasetView&&Galaxy.libraries.datasetView.$el.unbind("click"),Galaxy.libraries.datasetView=new b.default.LibraryDatasetView({id:t,show_permissions:!0})}),this.library_router.on("route:library_permissions",function(e){Galaxy.libraries.libraryView&&Galaxy.libraries.libraryView.$el.unbind("click"),Galaxy.libraries.libraryView=new x.default.LibraryView({id:e,show_permissions:!0})}),this.library_router.on("route:folder_permissions",function(e){Galaxy.libraries.folderView&&Galaxy.libraries.folderView.$el.unbind("click"),Galaxy.libraries.folderView=new M.default.FolderView({id:e,show_permissions:!0})}),this.library_router.on("route:import_datasets",function(e,t){Galaxy.libraries.folderToolbarView&&Galaxy.libraries.folderListView?Galaxy.libraries.folderToolbarView.showImportModal({source:t}):(Galaxy.libraries.folderToolbarView=new v.default.FolderToolbarView({id:e}),Galaxy.libraries.folderListView=new h.default.FolderListView({id:e}),Galaxy.libraries.folderToolbarView.showImportModal({source:t}))}),e.history.start({pushState:!1})}});t.default={GalaxyApp:T}}).call(t,n(2),n(0))},function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var i=function(e,t){return function(n,i){return n.get("type")===i.get("type")?n.has(e)||i.has(e)?n.has(e)?i.has(e)?n.get(e).toLowerCase()>i.get(e).toLowerCase()?"asc"===t?1:-1:i.get(e).toLowerCase()>n.get(e).toLowerCase()?"asc"===t?-1:1:0:-1:1:0:"folder"===n.get("type")?-1:1}},r=function(e,t){return function(n,i){return n.get(e).toLowerCase()>i.get(e).toLowerCase()?"asc"===t?1:-1:i.get(e).toLowerCase()>n.get(e).toLowerCase()?"asc"===t?-1:1:0}};t.default={generateFolderComparator:i,generateLibraryComparator:r}},function(e,t,n){"use strict";(function(e,i,r){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=n(7),s=a(o),l=n(18),c=a(l),d=n(318),u=a(d),h=e.View.extend({el:"#folder_items_element",progress:0,progressStep:1,folderContainer:null,current_sort_order:"asc",current_sort_key:"name",events:{"click #select-all-checkboxes":"selectAll","click .dataset_row":"selectClickedRow","click .folder_row":"selectClickedRow","click .sort-folder-name":"sortColumnClicked","click .sort-folder-file_ext":"sortColumnClicked","click .sort-folder-description":"sortColumnClicked","click .sort-folder-state":"sortColumnClicked"},collection:null,defaults:{include_deleted:!1,page_count:null,show_page:null},initialize:function(e){this.options=i.defaults(this.options||{},this.defaults,e),this.modal=null,this.rowViews={},this.collection=new c.default.Folder,this.listenTo(this.collection,"add",this.renderOne),this.listenTo(this.collection,"remove",this.removeOne),this.listenTo(this.collection,"sort",this.rePaint),this.listenTo(this.collection,"reset",this.rePaint),this.fetchFolder()},fetchFolder:function(e){var e=e||{};this.options.include_deleted=e.include_deleted;var t=this;this.folderContainer=new c.default.FolderContainer({id:this.options.id}),this.folderContainer.url=this.folderContainer.attributes.urlRoot+this.options.id+"/contents",this.options.include_deleted&&(this.folderContainer.url=this.folderContainer.url+"?include_deleted=true"),this.folderContainer.fetch({success:function(e){t.folder_container=e,t.render()},error:function(e,t){void 0!==t.responseJSON?s.default.error(t.responseJSON.err_msg+" Click this to go back.","",{onclick:function(){Galaxy.libraries.library_router.back()}}):s.default.error("An error occurred. Click this to go back.","",{onclick:function(){Galaxy.libraries.library_router.back()}})}})},render:function(e){this.options=i.extend(this.options,e);var t=this.templateFolder();r(".tooltip").hide();var n,a=this.folderContainer.attributes.metadata.full_path;if(n=1===a.length?0:a[a.length-2][0],this.$el.html(t({path:this.folderContainer.attributes.metadata.full_path,parent_library_id:this.folderContainer.attributes.metadata.parent_library_id,id:this.options.id,upper_folder_id:n,order:this.current_sort_order})),this.options.dataset_id){var o=i.findWhere(self.rowViews,{id:this.options.dataset_id});o?o.showDatasetDetails():s.default.error("Requested dataset not found. Showing folder instead.")}else(null===this.options.show_page||this.options.show_page<1)&&(this.options.show_page=1),this.paginate();r("#center [data-toggle]").tooltip(),r("#center").css("overflow","auto")},paginate:function(e){this.options=i.extend(this.options,e),(null===this.options.show_page||this.options.show_page<1)&&(this.options.show_page=1),this.options.total_items_count=this.folder_container.get("folder").models.length,this.options.page_count=Math.ceil(this.options.total_items_count/Galaxy.libraries.preferences.get("folder_page_size"));var t=Galaxy.libraries.preferences.get("folder_page_size")*(this.options.show_page-1),n=null;n=this.folder_container.get("folder").models.slice(t,t+Galaxy.libraries.preferences.get("folder_page_size")),this.options.items_shown=n.length,Galaxy.libraries.preferences.get("folder_page_size")*this.options.show_page>this.options.total_items_count+Galaxy.libraries.preferences.get("folder_page_size")&&(n=[]),Galaxy.libraries.folderToolbarView.renderPaginator(this.options),this.collection.reset(n)},rePaint:function(e){this.options=i.extend(this.options,e),this.removeAllRows(),this.renderAll(),this.checkEmptiness()},addAll:function(e){i.each(e,function(e){Galaxy.libraries.folderListView.collection.add(e,{current_sort_order:!1})}),r("#center [data-toggle]").tooltip(),this.checkEmptiness(),this.postRender()},postRender:function(){var e=this.folderContainer.attributes.metadata;e.contains_file_or_folder=void 0!==this.collection.findWhere({type:"file"})||void 0!==this.collection.findWhere({type:"folder"}),Galaxy.libraries.folderToolbarView.configureElements(e)},renderAll:function(){var e=this;i.each(this.collection.models.reverse(),function(t){e.renderOne(t)}),this.postRender()},renderOne:function(e){this.options.contains_file_or_folder=!0,e.set("folder_id",this.id);var t=new u.default.FolderRowView({model:e});this.rowViews[e.get("id")]=t,this.$el.find("#first_folder_item").after(t.el)},removeOne:function(e){this.$el.find("tr").filter(function(){return r(this).data("id")&&r(this).data("id")===e.id}).remove()},removeAllRows:function(){r(".library-row").remove()},checkEmptiness:function(){0===this.$el.find(".dataset_row").length&&0===this.$el.find(".folder_row").length?this.$el.find(".empty-folder-message").show():this.$el.find(".empty-folder-message").hide()},sortColumnClicked:function(e){e.preventDefault(),this.current_sort_order="asc"===this.current_sort_order?"desc":"asc",this.current_sort_key=e.currentTarget.className.replace("sort-folder-",""),this.collection.sortFolder(this.current_sort_key,this.current_sort_order),this.renderSortIcon()},selectAll:function(e){var t=e.target.checked,n=this;r(":checkbox","#folder_list_body").each(function(){this.checked=t;var e=r(this).closest("tr");t?n.makeDarkRow(e):n.makeWhiteRow(e)})},selectClickedRow:function(e){var t,n,i="";t=r(e.target).closest("tr"),"input"===e.target.localName?(i=e.target,n="input"):"td"===e.target.localName&&(i=t.find(":checkbox")[0],n="td"),i.checked?"td"===n?(i.checked="",this.makeWhiteRow(t)):"input"===n&&this.makeDarkRow(t):"td"===n?(i.checked="selected",this.makeDarkRow(t)):"input"===n&&this.makeWhiteRow(t)},makeDarkRow:function(e){e.removeClass("light").addClass("dark"),e.find("a").removeClass("light").addClass("dark"),e.find(".fa-file-o").removeClass("fa-file-o").addClass("fa-file"),e.find(".fa-folder-o").removeClass("fa-folder-o").addClass("fa-folder")},makeWhiteRow:function(e){e.removeClass("dark").addClass("light"),e.find("a").removeClass("dark").addClass("light"),e.find(".fa-file").removeClass("fa-file").addClass("fa-file-o"),e.find(".fa-folder").removeClass("fa-folder").addClass("fa-folder-o")},renderSortIcon:function(){"asc"===this.current_sort_order?(r('[class*="sort-icon"]').removeClass("fa-sort-alpha-desc").removeClass("fa-sort-alpha-asc"),r(".sort-icon-"+this.current_sort_key).addClass("fa-sort-alpha-asc")):r(".sort-icon-"+this.current_sort_key).addClass("fa-sort-alpha-desc")},templateFolder:function(){return i.template(['<ol class="breadcrumb">','<li><a title="Return to the list of libraries" href="#">Libraries</a></li>',"<% _.each(path, function(path_item) { %>","<% if (path_item[0] != id) { %>",'<li><a title="Return to this folder" href="#/folders/<%- path_item[0] %>"><%- path_item[1] %></a> </li> ',"<% } else { %>",'<li class="active"><span title="You are in this folder"><%- path_item[1] %></span></li>',"<% } %>","<% }); %>","</ol>",'<table data-library-id="<%- parent_library_id  %>" class="grid table table-condensed">',"<thead>",'<th class="button_heading"></th>','<th style="text-align: center; width: 20px; " title="Check to select all datasets"><input id="select-all-checkboxes" style="margin: 0;" type="checkbox"></th>','<th><a class="sort-folder-name" title="Click to reverse order" href="#">name</a> <span title="Sorted alphabetically" class="sort-icon-name fa fa-sort-alpha-<%- order %>"></span></th>','<th style="width:20%;"><a class="sort-folder-description" title="Click to reverse order" href="#">description</a> <span title="Sorted alphabetically" class="sort-icon-description fa"></span></th>','<th style="width:5%;"><a class="sort-folder-file_ext" title="Click to reverse order" href="#">data type</a> <span title="Sorted alphabetically" class="sort-icon-file_ext fa"></span></th>','<th style="width:10%;">size</th>','<th style="width:160px;">time updated (UTC)</th>','<th style="width:5%;"><a class="sort-folder-state" title="Click to reverse order" href="#">state</a> <span title="Sorted alphabetically" class="sort-icon-state fa"></span></th>','<th style="width:150px;"></th> ',"</thead>",'<tbody id="folder_list_body">','<tr id="first_folder_item">',"<td>",'<a href="#<% if (upper_folder_id !== 0){ print("folders/" + upper_folder_id)} %>" title="Go to parent folder" class="btn_open_folder btn btn-default btn-xs">..<a>',"</td>","<td></td>","<td></td>","<td></td>","<td></td>","<td></td>","<td></td>","<td></td>","<td></td>","</tr>","</tbody>","</table>",'<div class="empty-folder-message" style="display:none;">',"This folder is either empty or you do not have proper access permissions to see the contents. If you expected something to show up",' please consult the <a href="https://galaxyproject.org/data-libraries/#permissions" target="_blank">library security wikipage</a>',' or visit the <a href="https://biostar.usegalaxy.org/" target="_blank">Galaxy support site</a>.',"</div>"].join(""))}});t.default={FolderListView:h}}).call(t,n(2),n(1),n(0))},function(e,t,n){"use strict";(function(e,i,r){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=n(7),s=a(o),l=n(18),c=a(l),d=n(138),u=a(d),h=e.View.extend({events:{"click .undelete_dataset_btn":"undeleteDataset","click .undelete_folder_btn":"undeleteFolder","click .edit_folder_btn":"startModifications","click .cancel_folder_btn":"cancelModifications","click .save_folder_btn":"saveModifications"},defaults:{type:null,visibility_config:{edit_folder_btn:!1,save_folder_btn:!1,cancel_folder_btn:!1,permission_folder_btn:!1},edit_mode:!1},initialize:function(e){this.options=i.defaults(e||{},this.defaults),this.render(this.options)},render:function(e){this.options=i.extend(this.options,e);var t=this.options.model,n=null;return"folder"===t.get("type")||"LibraryFolder"===t.get("model_class")?(this.options.type="folder",this.prepareButtons(t),n=t.get("deleted")?this.templateRowDeletedFolder():this.templateRowFolder()):"file"===t.get("type")||"LibraryDatasetDatasetAssociation"===t.get("model_class")||"LibraryDataset"===t.get("model_class")?(this.options.type="file",n=t.get("deleted")?this.templateRowDeletedFile():this.templateRowFile()):(Galaxy.emit.error("Unknown library item type found."),Galaxy.emit.error(t.get("type")||t.get("model_class"))),this.setElement(n({content_item:t,edit_mode:this.options.edit_mode,button_config:this.options.visibility_config})),this.$el.show(),this},prepareButtons:function(e){var t=this.options.visibility_config;!1===this.options.edit_mode?(t.save_folder_btn=!1,t.cancel_folder_btn=!1,!0===e.get("deleted")?(t.edit_folder_btn=!1,t.permission_folder_btn=!1):!1===e.get("deleted")&&(t.save_folder_btn=!1,t.cancel_folder_btn=!1,!0===e.get("can_modify")&&(t.edit_folder_btn=!0),!0===e.get("can_manage")&&(t.permission_folder_btn=!0))):!0===this.options.edit_mode&&(t.edit_folder_btn=!1,t.permission_folder_btn=!1,t.save_folder_btn=!0,t.cancel_folder_btn=!0),this.options.visibility_config=t},showDatasetDetails:function(){Galaxy.libraries.datasetView=new u.default.LibraryDatasetView({id:this.id})},undeleteDataset:function(e){r(".tooltip").hide();var t=this,n=r(e.target).closest("tr").data("id"),i=Galaxy.libraries.folderListView.collection.get(n);i.url=i.urlRoot+i.id+"?undelete=true",i.destroy({success:function(e,i){Galaxy.libraries.folderListView.collection.remove(n);var r=new c.default.Item(i);Galaxy.libraries.folderListView.collection.add(r),Galaxy.libraries.folderListView.collection.sortFolder("name","asc"),s.default.success("Dataset undeleted. Click this to see it.","",{onclick:function(){var e=t.model.get("folder_id");window.location=Galaxy.root+"library/list#folders/"+e+"/datasets/"+t.id}})},error:function(e,t){void 0!==t.responseJSON?s.default.error("Dataset was not undeleted. "+t.responseJSON.err_msg):s.default.error("An error occured! Dataset was not undeleted. Please try again.")}})},undeleteFolder:function(e){r(".tooltip").hide();var t=r(e.target).closest("tr").data("id"),n=Galaxy.libraries.folderListView.collection.get(t);n.url=n.urlRoot+n.id+"?undelete=true",n.destroy({success:function(e,n){Galaxy.libraries.folderListView.collection.remove(t);var i=new c.default.FolderAsModel(n);Galaxy.libraries.folderListView.collection.add(i),Galaxy.libraries.folderListView.collection.sortFolder("name","asc"),s.default.success("Folder undeleted.")},error:function(e,t){void 0!==t.responseJSON?s.default.error("Folder was not undeleted. "+t.responseJSON.err_msg):s.default.error("An error occured! Folder was not undeleted. Please try again.")}})},startModifications:function(){this.options.edit_mode=!0,this.repaint()},cancelModifications:function(){this.options.edit_mode=!1,this.repaint()},saveModifications:function(){var e=Galaxy.libraries.folderListView.collection.get(this.$el.data("id")),t=!1,n=this.$el.find(".input_folder_name").val();if(void 0!==n&&n!==e.get("name")){if(!(n.length>2))return void s.default.warning("Folder name has to be at least 3 characters long.");e.set("name",n),t=!0}var i=this.$el.find(".input_folder_description").val();if(void 0!==i&&i!==e.get("description")&&(e.set("description",i),t=!0),t){var r=this;e.save(null,{patch:!0,success:function(e){r.options.edit_mode=!1,r.repaint(e),s.default.success("Changes to folder saved.")},error:function(e,t){void 0!==t.responseJSON?s.default.error(t.responseJSON.err_msg):s.default.error("An error occured while attempting to update the folder.")}})}else this.options.edit_mode=!1,this.repaint(e),s.default.info("Nothing has changed.")},repaint:function(){r(".tooltip").hide();var e=this.$el;this.render(),e.replaceWith(this.$el),this.$el.find("[data-toggle]").tooltip()},templateRowFolder:function(){return i.template(['<tr class="folder_row light library-row" data-id="<%- content_item.id %>">',"<td>",'<span title="Folder" class="fa fa-folder-o"/>',"</td>",'<td style="text-align: center; "><input style="margin: 0;" type="checkbox"></td>',"<% if(!edit_mode) { %>","<td>",'<a href="#folders/<%- content_item.id %>"><%- content_item.get("name") %></a>',"</td>","<td>",'<%- content_item.get("description") %>',"</td>","<% } else if(edit_mode){ %>",'<td><textarea rows="4" class="form-control input_folder_name" placeholder="name" ><%- content_item.get("name") %></textarea></td>','<td><textarea rows="4" class="form-control input_folder_description" placeholder="description" ><%- content_item.get("description") %></textarea></td>',"<% } %>","<td>folder</td>","<td></td>","<td>",'<%= _.escape(content_item.get("update_time")) %>',"</td>","<td></td>","<td>","<% if(edit_mode) { %>",'<button data-toggle="tooltip" data-placement="top" title="Save changes" class="primary-button btn-xs save_folder_btn" type="button" style="<% if(button_config.save_folder_btn === false) { print("display:none;") } %>">','<span class="fa fa-floppy-o"/> Save',"</button>",'<button data-toggle="tooltip" data-placement="top" title="Discard changes" class="primary-button btn-xs cancel_folder_btn" type="button" style="<% if(button_config.cancel_folder_btn === false) { print("display:none;") } %>">','<span class="fa fa-times"/> Cancel',"</button>","<% } else if (!edit_mode){%>",'<button data-toggle="tooltip" data-placement="top" title="Modify \'<%- content_item.get("name") %>\'" class="primary-button btn-xs edit_folder_btn" type="button" style="<% if(button_config.edit_folder_btn === false) { print("display:none;") } %>">','<span class="fa fa-pencil"/> Edit',"</button>",'<a href="#/folders/<%- content_item.id %>/permissions">','<button data-toggle="tooltip" data-placement="top" class="primary-button btn-xs permission_folder_btn" title="Permissions of \'<%- content_item.get("name") %>\'" style="<% if(button_config.permission_folder_btn === false) { print("display:none;") } %>">','<span class="fa fa-group"/> Manage',"</button>","</a>","<% } %>","</td>","</tr>"].join(""))},templateRowFile:function(){return i.template(['<tr class="dataset_row light library-row" data-id="<%- content_item.id %>">',"<td>",'<span title="Dataset" class="fa fa-file-o"/>',"</td>",'<td style="text-align: center; ">','<input style="margin: 0;" type="checkbox">',"</td>","<td>",'<a href="#folders/<%- content_item.get("folder_id") %>/datasets/<%- content_item.id %>" class="library-dataset">','<%- content_item.get("name") %>',"<a>","</td>",'<td><%- content_item.get("message") %></td>','<td><%= _.escape(content_item.get("file_ext")) %></td>','<td><%= _.escape(content_item.get("file_size")) %></td>','<td><%= _.escape(content_item.get("update_time")) %></td>',"<td>",'<% if ( content_item.get("state") !== "ok" ) { %>','<%= _.escape(content_item.get("state")) %>',"<% } %>","</td>","<td>",'<% if (content_item.get("is_unrestricted")) { %>','<span data-toggle="tooltip" data-placement="top" title="Unrestricted dataset" style="color:grey;" class="fa fa-globe fa-lg"/>',"<% } %>",'<% if (content_item.get("is_private")) { %>','<span data-toggle="tooltip" data-placement="top" title="Private dataset" style="color:grey;" class="fa fa-key fa-lg"/>',"<% } %>",'<% if ((content_item.get("is_unrestricted") === false) && (content_item.get("is_private") === false)) { %>','<span data-toggle="tooltip" data-placement="top" title="Restricted dataset" style="color:grey;" class="fa fa-shield fa-lg"/>',"<% } %>",'<% if (content_item.get("can_manage")) { %>','<a href="#folders/<%- content_item.get("folder_id") %>/datasets/<%- content_item.id %>/permissions">','<button data-toggle="tooltip" data-placement="top" class="primary-button btn-xs permissions-dataset-btn" title="Permissions of \'<%- content_item.get("name") %>\'">','<span class="fa fa-group"/> Manage',"</button>","</a>","<% } %>","</td>","</tr>"].join(""))},templateRowDeletedFile:function(){return i.template(['<tr class="active deleted_dataset library-row" data-id="<%- content_item.id %>">',"<td>",'<span title="Dataset" class="fa fa-file-o"/>',"</td>","<td></td>",'<td style="color:grey;">','<%- content_item.get("name") %>',"</td>","<td>",'<%- content_item.get("message") %>',"</td>","<td>",'<%= _.escape(content_item.get("file_ext")) %>',"</td>","<td>",'<%= _.escape(content_item.get("file_size")) %>',"</td>","<td>",'<%= _.escape(content_item.get("update_time")) %>',"</td>","<td>",'<% if ( content_item.get("state") !== "ok" ) { %>','<%= _.escape(content_item.get("state")) %>',"<% } %>","</td>","<td>",'<span data-toggle="tooltip" data-placement="top" title="Marked deleted" style="color:grey;" class="fa fa-ban fa-lg"/>','<button data-toggle="tooltip" data-placement="top" title="Undelete \'<%- content_item.get("name") %>\'" class="primary-button btn-xs undelete_dataset_btn" type="button" style="margin-left:1em;">','<span class="fa fa-unlock"/> Undelete',"</button>","</td>","</tr>"].join(""))},templateRowDeletedFolder:function(){return i.template(['<tr class="active deleted_folder light library-row" data-id="<%- content_item.id %>">',"<td>",'<span title="Folder" class="fa fa-folder-o"/>',"</td>","<td></td>",'<td style="color:grey;">','<%- content_item.get("name") %>',"</td>","<td>",'<%- content_item.get("description") %>',"</td>","<td>","folder","</td>","<td></td>","<td>",'<%= _.escape(content_item.get("update_time")) %>',"</td>","<td></td>","<td>",'<span data-toggle="tooltip" data-placement="top" title="Marked deleted" style="color:grey;" class="fa fa-ban fa-lg"/>','<button data-toggle="tooltip" data-placement="top" title="Undelete \'<%- content_item.get("name") %>\'" class="primary-button btn-xs undelete_folder_btn" type="button" style="margin-left:1em;">','<span class="fa fa-unlock"/> Undelete',"</button>","</td>","</tr>"].join(""))}});t.default={FolderRowView:h}}).call(t,n(2),n(1),n(0))},function(e,t,n){"use strict";(function(e,i){function r(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=n(7),o=r(a),s=n(18),l=r(s),c=n(320),d=r(c),u=n(1),h=r(u),f=e.View.extend({el:"#libraries_element",events:{"click .sort-libraries-link":"sort_clicked"},defaults:{page_count:null,show_page:null,all_fetched:!1},initialize:function(e){this.options=h.default.defaults(this.options||{},e,this.defaults);var t=this;this.modal=null,this.collection=new l.default.Libraries,this.collection.url=this.collection.urlRoot+"?deleted=false",this.collection.fetch({success:function(){t.render()},error:function(e,t){void 0!==t.responseJSON?o.default.error(t.responseJSON.err_msg):o.default.error("An error occurred.")}})},render:function(e){this.options=h.default.extend(this.options,e),this.setElement("#libraries_element");var t=this.templateLibraryList(),n=null,r=null,a=function(e){return!0===e.get("public")};if(i(".tooltip").hide(),void 0!==e&&(r=void 0!==e.models?e.models:null),null!==this.collection&&null===r)this.sortLibraries(),n=Galaxy.libraries.preferences.get("with_deleted")?this.collection.models:this.collection.where({deleted:!1}),Galaxy.libraries.preferences.get("without_restricted")&&(n=h.default.filter(n,a));else if(null!==r){if(Galaxy.libraries.preferences.get("with_deleted"))n=r;else{var o=function(e){return!1===e.get("deleted")};n=h.default.filter(r,o)}Galaxy.libraries.preferences.get("without_restricted")&&(n=h.default.filter(n,a))}else n=[];(null===this.options.show_page||this.options.show_page<1)&&(this.options.show_page=1),this.options.total_libraries_count=n.length;var s=Galaxy.libraries.preferences.get("library_page_size")*(this.options.show_page-1);this.options.page_count=Math.ceil(this.options.total_libraries_count/Galaxy.libraries.preferences.get("library_page_size")),this.options.total_libraries_count>0&&s<this.options.total_libraries_count?(n=n.slice(s,s+Galaxy.libraries.preferences.get("library_page_size")),this.options.libraries_shown=n.length,Galaxy.libraries.preferences.get("library_page_size")*this.options.show_page>this.options.total_libraries_count+Galaxy.libraries.preferences.get("library_page_size")&&(n=[]),this.$el.html(t({length:1,order:Galaxy.libraries.preferences.get("sort_order"),search_term:Galaxy.libraries.libraryToolbarView.options.search_term})),Galaxy.libraries.libraryToolbarView.renderPaginator(this.options),this.renderRows(n)):(this.$el.html(t({length:0,order:Galaxy.libraries.preferences.get("sort_order"),search_term:Galaxy.libraries.libraryToolbarView.options.search_term})),Galaxy.libraries.libraryToolbarView.renderPaginator(this.options)),i("#center [data-toggle]").tooltip(),i("#center").css("overflow","auto")},fetchDeleted:function(){if(this.options.all_fetched)this.render();else{var e=this;this.collection.url=this.collection.urlRoot+"?deleted=true",this.collection.fetch({remove:!1,success:function(){e.options.all_fetched=!0,e.render()},error:function(e,t){void 0!==t.responseJSON?o.default.error(t.responseJSON.err_msg):o.default.error("An error occurred.")}})}},renderRows:function(e){for(var t=0;t<e.length;t++){var n=e[t];this.renderOne({library:n})}},renderOne:function(e){var t=e.library,n=new d.default.LibraryRowView(t);this.$el.find("#library_list_body").append(n.el)},sort_clicked:function(){"asc"===Galaxy.libraries.preferences.get("sort_order")?Galaxy.libraries.preferences.set({sort_order:"desc"}):Galaxy.libraries.preferences.set({sort_order:"asc"}),this.render()},sortLibraries:function(){"name"===Galaxy.libraries.preferences.get("sort_by")&&("asc"===Galaxy.libraries.preferences.get("sort_order")?this.collection.sortLibraries("name","asc"):"desc"===Galaxy.libraries.preferences.get("sort_order")&&this.collection.sortLibraries("name","desc"))},searchLibraries:function(e){if(""!==i.trim(e)){var t=null;t=this.collection.search(e),this.options.searching=!0,this.render({models:t,show_page:1})}else this.options.searching=!1,this.render()},templateLibraryList:function(){return h.default.template(['<div class="library_container table-responsive">',"<% if(length === 0) { %>","<% if(search_term.length > 0) { %>","<div>","There are no libraries matching your search. Try different keyword.","</div>","<% } else{ %>","<div>","There are no libraries visible to you here. If you expected some to show up please consult the",' <a href="https://galaxyproject.org/data-libraries/#permissions" target="_blank">library security wikipage</a>',' or visit the <a href="https://biostar.usegalaxy.org/" target="_blank">Galaxy support site</a>.',"</div>","<% }%>","<% } else{ %>",'<table class="grid table table-condensed">',"<thead>",'<th style="width:30%;">','<a class="sort-libraries-link" title="Click to reverse order" href="#">',"name","</a>",'<span title="Sorted alphabetically" class="fa fa-sort-alpha-<%- order %>"/>',"</th>",'<th style="width:22%;">description</th>','<th style="width:22%;">synopsis</th> ','<th style="width:26%;"></th>',"</thead>",'<tbody id="library_list_body">',"</tbody>","</table>","<% }%>","</div>"].join(""))}});t.default={LibraryListView:f}}).call(t,n(2),n(0))},function(e,t,n){"use strict";(function(e,i,r){Object.defineProperty(t,"__esModule",{value:!0});var a=n(7),o=function(e){return e&&e.__esModule?e:{default:e}}(a),s=e.View.extend({events:{"click .edit_library_btn":"edit_button_clicked","click .cancel_library_btn":"cancel_library_modification","click .save_library_btn":"save_library_modification","click .delete_library_btn":"delete_library","click .undelete_library_btn":"undelete_library"},edit_mode:!1,element_visibility_config:{upload_library_btn:!1,edit_library_btn:!1,permission_library_btn:!1,save_library_btn:!1,cancel_library_btn:!1,delete_library_btn:!1,undelete_library_btn:!1},initialize:function(e){this.render(e)},render:function(e){void 0===e&&(e=Galaxy.libraries.libraryListView.collection.get(this.$el.data("id"))),this.prepareButtons(e);var t=this.templateRow();return this.setElement(t({library:e,button_config:this.element_visibility_config,edit_mode:this.edit_mode})),this.$el.show(),this},repaint:function(e){i(".tooltip").hide();var t=this.$el;this.render(),t.replaceWith(this.$el),this.$el.find("[data-toggle]").tooltip()},prepareButtons:function(e){var t=this.element_visibility_config;!1===this.edit_mode?(t.save_library_btn=!1,t.cancel_library_btn=!1,t.delete_library_btn=!1,!0===e.get("deleted")?(t.undelete_library_btn=!0,t.upload_library_btn=!1,t.edit_library_btn=!1,t.permission_library_btn=!1):!1===e.get("deleted")&&(t.save_library_btn=!1,t.cancel_library_btn=!1,t.undelete_library_btn=!1,!0===e.get("can_user_add")&&(t.upload_library_btn=!0),!0===e.get("can_user_modify")&&(t.edit_library_btn=!0),!0===e.get("can_user_manage")&&(t.permission_library_btn=!0))):!0===this.edit_mode&&(t.upload_library_btn=!1,t.edit_library_btn=!1,t.permission_library_btn=!1,t.save_library_btn=!0,t.cancel_library_btn=!0,t.delete_library_btn=!0,t.undelete_library_btn=!1),this.element_visibility_config=t},edit_button_clicked:function(){this.edit_mode=!0,this.repaint()},cancel_library_modification:function(){this.edit_mode=!1,this.repaint()},save_library_modification:function(){var e=Galaxy.libraries.libraryListView.collection.get(this.$el.data("id")),t=!1,n=this.$el.find(".input_library_name").val();if(void 0!==n&&n!==e.get("name")){if(!(n.length>2))return void o.default.warning("Library name has to be at least 3 characters long.");e.set("name",n),t=!0}var i=this.$el.find(".input_library_description").val();void 0!==i&&i!==e.get("description")&&(e.set("description",i),t=!0);var r=this.$el.find(".input_library_synopsis").val();if(void 0!==r&&r!==e.get("synopsis")&&(e.set("synopsis",r),t=!0),t){var a=this;e.save(null,{patch:!0,success:function(e){a.edit_mode=!1,a.repaint(e),o.default.success("Changes to library saved.")},error:function(e,t){void 0!==t.responseJSON?o.default.error(t.responseJSON.err_msg):o.default.error("An error occured while attempting to update the library.")}})}else this.edit_mode=!1,this.repaint(e),o.default.info("Nothing has changed.")},delete_library:function(){var e=Galaxy.libraries.libraryListView.collection.get(this.$el.data("id")),t=this;e.destroy({success:function(e){e.set("deleted",!0),Galaxy.libraries.libraryListView.collection.add(e),t.edit_mode=!1,!1===Galaxy.libraries.preferences.get("with_deleted")?(i(".tooltip").hide(),t.repaint(e),t.$el.remove()):!0===Galaxy.libraries.preferences.get("with_deleted")&&t.repaint(e),o.default.success("Library has been marked deleted.")},error:function(e,t){void 0!==t.responseJSON?o.default.error(t.responseJSON.err_msg):o.default.error("An error occured during deleting the library.")}})},undelete_library:function(){var e=Galaxy.libraries.libraryListView.collection.get(this.$el.data("id")),t=this;e.url=e.urlRoot+e.id+"?undelete=true",e.destroy({success:function(e){e.set("deleted",!1),Galaxy.libraries.libraryListView.collection.add(e),t.edit_mode=!1,t.repaint(e),o.default.success("Library has been undeleted.")},error:function(e,t){void 0!==t.responseJSON?o.default.error(t.responseJSON.err_msg):o.default.error("An error occured while undeleting the library.")}})},templateRow:function(){return r.template(['<tr class="<% if(library.get("deleted") === true) { print("active") } %>" style="display:none;" data-id="<%- library.get("id") %>">',"<% if(!edit_mode) { %>",'<% if(library.get("deleted")) { %>','<td style="color:grey;"><%- library.get("name") %></td>',"<% } else { %>",'<td><a href="#folders/<%- library.get("root_folder_id") %>"><%- library.get("name") %></a></td>',"<% } %>",'<% if(library.get("description")) { %>','<% if( (library.get("description")).length> 80 ) { %>','<td data-toggle="tooltip" data-placement="bottom" title="<%= _.escape(library.get("description")) %>"><%= _.escape(library.get("description")).substring(0, 80) + "..." %></td>',"<% } else { %>",'<td><%= _.escape(library.get("description"))%></td>',"<% } %>","<% } else { %>","<td></td>","<% } %>",'<% if(library.get("synopsis")) { %>','<% if( (library.get("synopsis")).length> 120 ) { %>','<td data-toggle="tooltip" data-placement="bottom" title="<%= _.escape(library.get("synopsis")) %>"><%= _.escape(library.get("synopsis")).substring(0, 120) + "..." %></td>',"<% } else { %>",'<td><%= _.escape(library.get("synopsis"))%></td>',"<% } %>","<% } else { %>","<td></td>","<% } %>","<% } else if(edit_mode){ %>",'<td><textarea rows="4" class="form-control input_library_name" placeholder="name" ><%- library.get("name") %></textarea></td>','<td><textarea rows="4" class="form-control input_library_description" placeholder="description" ><%- library.get("description") %></textarea></td>','<td><textarea rows="4" class="form-control input_library_synopsis" placeholder="synopsis" ><%- library.get("synopsis") %></textarea></td>',"<% } %>",'<td class="right-center">','<% if( (library.get("public")) && (library.get("deleted") === false) ) { %>','<span data-toggle="tooltip" data-placement="top" title="Unrestricted library" style="color:grey;" class="fa fa-globe fa-lg"> </span>',"<% }%>",'<button data-toggle="tooltip" data-placement="top" title="Modify \'<%- library.get("name") %>\'" class="primary-button btn-xs edit_library_btn" type="button" style="<% if(button_config.edit_library_btn === false) { print("display:none;") } %>"><span class="fa fa-pencil"></span> Edit</button>','<a href="#library/<%- library.get("id") %>/permissions"><button data-toggle="tooltip" data-placement="top" title="Permissions of \'<%- library.get("name") %>\'" class="primary-button btn-xs permission_library_btn" type="button" style="<% if(button_config.permission_library_btn === false) { print("display:none;") } %>"><span class="fa fa-group"></span> Manage</button></a>','<button data-toggle="tooltip" data-placement="top" title="Save changes" class="primary-button btn-xs save_library_btn" type="button" style="<% if(button_config.save_library_btn === false) { print("display:none;") } %>"><span class="fa fa-floppy-o"></span> Save</button>','<button data-toggle="tooltip" data-placement="top" title="Discard changes" class="primary-button btn-xs cancel_library_btn" type="button" style="<% if(button_config.cancel_library_btn === false) { print("display:none;") } %>"><span class="fa fa-times"></span> Cancel</button>','<button data-toggle="tooltip" data-placement="top" title="Delete \'<%- library.get("name") %>\'" class="primary-button btn-xs delete_library_btn" type="button" style="<% if(button_config.delete_library_btn === false) { print("display:none;") } %>"><span class="fa fa-trash-o"></span> Delete</button>','<span data-toggle="tooltip" data-placement="top" title="Marked deleted" style="color:grey; <% if(button_config.undelete_library_btn === false) { print("display:none;") } %>" class="fa fa-ban fa-lg"></span>','<button data-toggle="tooltip" data-placement="top" title="Undelete \'<%- library.get("name") %>\' " class="primary-button btn-xs undelete_library_btn" type="button" style="<% if(button_config.undelete_library_btn === false) { print("display:none;") } %>"><span class="fa fa-unlock"></span> Undelete</button>',"</td>","</tr>"].join(""))}});t.default={LibraryRowView:s}}).call(t,n(2),n(0),n(1))},function(e,t,n){"use strict";(function(e,i,r){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=n(3),s=a(o),l=n(7),c=a(l),d=n(18),u=a(d),h=e.View.extend({el:"#center",defaults:{search_term:""},events:{"click #create_new_library_btn":"createLibraryFromModal","click #include_deleted_chk":"includeDeletedChecked","click #exclude_restricted_chk":"excludeRestrictedChecked","click .page_size_prompt":"showPageSizePrompt","keyup .library-search-input":"searchLibraries"},initialize:function(e){this.options=i.defaults(this.options||{},e,this.defaults),this.render()},render:function(){var e=this.templateToolBar(),t=!1,n=!0;Galaxy.user&&(t=Galaxy.user.isAdmin(),n=Galaxy.user.isAnonymous()),this.$el.html(e({admin_user:t,anon_user:n})),t&&(this.$el.find("#include_deleted_chk")[0].checked=Galaxy.libraries.preferences.get("with_deleted"),this.$el.find("#exclude_restricted_chk")[0].checked=Galaxy.libraries.preferences.get("without_restricted"))},renderPaginator:function(e){this.options=i.extend(this.options,e);var t=this.templatePaginator();this.$el.find("#library_paginator").html(t({show_page:parseInt(this.options.show_page),page_count:parseInt(this.options.page_count),total_libraries_count:this.options.total_libraries_count,libraries_shown:this.options.libraries_shown,library_page_size:Galaxy.libraries.preferences.get("library_page_size")}))},createLibraryFromModal:function(e){e.preventDefault(),e.stopPropagation();var t=this;this.modal=Galaxy.modal,this.modal.show({closing_events:!0,title:(0,s.default)("Create New Library"),body:this.templateNewLibraryInModal(),buttons:{Create:function(){t.createNewLibrary()},Close:function(){t.modal.hide()}}})},createNewLibrary:function(){var e=this.serializeNewLibrary();if(this.validateNewLibrary(e)){var t=new u.default.Library,n=this;t.save(e,{success:function(e){Galaxy.libraries.libraryListView.collection.add(e),n.modal.hide(),n.clearLibraryModal(),Galaxy.libraries.libraryListView.render(),c.default.success("Library created.")},error:function(e,t){void 0!==t.responseJSON?c.default.error(t.responseJSON.err_msg):c.default.error("An error occured.")}})}else c.default.error("Library's name is missing.");return!1},showPageSizePrompt:function(e){e.preventDefault();var t=prompt("How many libraries per page do you want to see?",Galaxy.libraries.preferences.get("library_page_size"));null!=t&&t==parseInt(t)&&(Galaxy.libraries.preferences.set({library_page_size:parseInt(t)}),Galaxy.libraries.libraryListView.render({show_page:1}))},clearLibraryModal:function(){r("input[name='Name']").val(""),r("input[name='Description']").val(""),r("input[name='Synopsis']").val("")},serializeNewLibrary:function(){return{name:r("input[name='Name']").val(),description:r("input[name='Description']").val(),synopsis:r("input[name='Synopsis']").val()}},validateNewLibrary:function(e){return""!==e.name},includeDeletedChecked:function(e){e.target.checked?(Galaxy.libraries.preferences.set({with_deleted:!0}),Galaxy.libraries.libraryListView.fetchDeleted()):(Galaxy.libraries.preferences.set({with_deleted:!1}),Galaxy.libraries.libraryListView.render())},excludeRestrictedChecked:function(e){e.target.checked?Galaxy.libraries.preferences.set({without_restricted:!0}):Galaxy.libraries.preferences.set({without_restricted:!1}),Galaxy.libraries.libraryListView.render()},searchLibraries:function(e){var t=r(".library-search-input").val();this.options.search_term=t,Galaxy.libraries.libraryListView.searchLibraries(t)},templateToolBar:function(){return i.template(['<div class="library_style_container">','<div id="toolbar_form">','<div id="library_toolbar">','<form class="form-inline" role="form">','<span><strong><a href="#" title="Go to first page">DATA LIBRARIES</a></strong></span>','<span id="library_paginator" class="library-paginator">',"</span>",'<div class="form-group toolbar-item">','<input type="text" class="form-control library-search-input" placeholder="Search" size="30">',"</div>","<% if(admin_user === true) { %>",'<div class="checkbox toolbar-item" style="height: 20px;">',"<label>",'<input id="include_deleted_chk" type="checkbox">',"include deleted ","</input>","</label>","<label>",'<input id="exclude_restricted_chk" type="checkbox">',"exclude restricted","</input>","</label>","</div>",'<span class="toolbar-item" data-toggle="tooltip" data-placement="top" title="Create New Library">','<button id="create_new_library_btn" class="primary-button btn-xs" type="button"><span class="fa fa-plus"></span> New Library</button>',"</span>","<% } %>",'<span class="help-button" data-toggle="tooltip" data-placement="top" title="See this screen annotated">','<a href="https://galaxyproject.org/data-libraries/screen/list-of-libraries/" target="_blank">','<button class="primary-button" type="button"><span class="fa fa-question-circle"></span> Help</button>',"</a>","</span>","</form>","</div>","</div>",'<div id="libraries_element">',"</div>","</div>"].join(""))},templatePaginator:function(){return i.template(['<ul class="pagination pagination-sm">',"<% if ( ( show_page - 1 ) > 0 ) { %>","<% if ( ( show_page - 1 ) > page_count ) { %>",'<li><a href="#page/1"><span class="fa fa-angle-double-left"></span></a></li>','<li class="disabled"><a href="#page/<% print( show_page ) %>"><% print( show_page - 1 ) %></a></li>',"<% } else { %>",'<li><a href="#page/1"><span class="fa fa-angle-double-left"></span></a></li>','<li><a href="#page/<% print( show_page - 1 ) %>"><% print( show_page - 1 ) %></a></li>',"<% } %>","<% } else { %>",'<li class="disabled"><a href="#page/1"><span class="fa fa-angle-double-left"></span></a></li>','<li class="disabled"><a href="#page/<% print( show_page ) %>"><% print( show_page - 1 ) %></a></li>',"<% } %>",'<li class="active">','<a href="#page/<% print( show_page ) %>"><% print( show_page ) %></a>',"</li>","<% if ( ( show_page ) < page_count ) { %>",'<li><a href="#page/<% print( show_page + 1 ) %>"><% print( show_page + 1 ) %></a></li>','<li><a href="#page/<% print( page_count ) %>"><span class="fa fa-angle-double-right"></span></a></li>',"<% } else { %>",'<li class="disabled"><a href="#page/<% print( show_page  ) %>"><% print( show_page + 1 ) %></a></li>','<li class="disabled"><a href="#page/<% print( page_count ) %>"><span class="fa fa-angle-double-right"></span></a></li>',"<% } %>","</ul>","<span>",' <%- libraries_shown %> libraries shown <a href="" data-toggle="tooltip" data-placement="top" title="currently <%- library_page_size %> per page" class="page_size_prompt">(change)</a>',"</span>","<span>"," <%- total_libraries_count %> total","</span>"].join(""))},templateNewLibraryInModal:function(){return i.template(['<div id="new_library_modal">',"<form>",'<input type="text" name="Name" value="" placeholder="Name" autofocus>','<input type="text" name="Description" value="" placeholder="Description">','<input type="text" name="Synopsis" value="" placeholder="Synopsis">',"</form>","</div>"].join(""))}});t.default={LibraryToolbarView:h}}).call(t,n(2),n(1),n(0))},function(e,t,n){"use strict";(function(e,i,r,a){function o(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=n(3),l=o(s),c=n(5),d=o(c),u=n(7),h=o(u),f=n(18),p=o(f),g=n(12),m=o(g);n(139);var _=e.View.extend({el:"#center",events:{"click #toolbtn_create_folder":"createFolderFromModal","click #toolbtn_bulk_import":"modalBulkImport","click #include_deleted_datasets_chk":"checkIncludeDeleted","click #toolbtn_bulk_delete":"deleteSelectedItems","click .toolbtn-show-locinfo":"showLocInfo","click .page_size_prompt":"showPageSizePrompt"},defaults:{can_add_library_item:!1,contains_file_or_folder:!1,chain_call_control:{total_number:0,failed_number:0},disabled_jstree_element:"folders"},modal:null,jstree:null,histories:null,select_genome:null,select_extension:null,list_extensions:[],auto:{id:"auto",text:"Auto-detect",description:"This system will try to detect the file type automatically. If your file is not detected properly as one of the known formats, it most likely means that it has some format problems (e.g., different number of columns on different rows). You can still coerce the system to set your data to the format you think it should be. You can also upload compressed files, which will automatically be decompressed."},list_genomes:[],initialize:function(e){this.options=i.defaults(e||{},this.defaults),this.fetchExtAndGenomes(),this.render()},render:function(e){this.options=i.extend(this.options,e);var t=this.templateToolBar(),n={id:this.options.id,is_admin:!1,is_anonym:!0,mutiple_add_dataset_options:!1};Galaxy.user&&(n.is_admin=Galaxy.user.isAdmin(),n.is_anonym=Galaxy.user.isAnonymous(),null===Galaxy.config.user_library_import_dir&&!1===Galaxy.config.allow_library_path_paste&&null===Galaxy.config.library_import_dir||(n.mutiple_add_dataset_options=!0)),this.$el.html(t(n))},renderPaginator:function(e){this.options=i.extend(this.options,e);var t=this.templatePaginator();r("body").find(".folder-paginator").html(t({id:this.options.id,show_page:parseInt(this.options.show_page),page_count:parseInt(this.options.page_count),total_items_count:this.options.total_items_count,items_shown:this.options.items_shown,folder_page_size:Galaxy.libraries.preferences.get("folder_page_size")}))},configureElements:function(e){this.options=i.extend(this.options,e),!0===this.options.can_add_library_item?r(".add-library-items").show():r(".add-library-items").hide(),!0===this.options.contains_file_or_folder&&Galaxy.user?Galaxy.user.isAnonymous()?(r(".dataset-manipulation").show(),r(".logged-dataset-manipulation").hide()):(r(".logged-dataset-manipulation").show(),r(".dataset-manipulation").show()):(r(".logged-dataset-manipulation").hide(),r(".dataset-manipulation").hide()),this.$el.find("[data-toggle]").tooltip()},createFolderFromModal:function(e){e.preventDefault(),e.stopPropagation();var t=this,n=this.templateNewFolderInModal();this.modal=Galaxy.modal,this.modal.show({closing_events:!0,title:(0,l.default)("Create New Folder"),body:n(),buttons:{Create:function(){t.create_new_folder_event()},Close:function(){Galaxy.modal.hide()}}})},create_new_folder_event:function(){var t=this.serialize_new_folder();if(this.validate_new_folder(t)){var n,i=new p.default.FolderAsModel,r=e.history.fragment.split("/");n=r.indexOf("page")>-1?r[r.length-3]:r[r.length-1],i.url=i.urlRoot+n,i.save(t,{success:function(e){Galaxy.modal.hide(),h.default.success("Folder created."),e.set({type:"folder"}),Galaxy.libraries.folderListView.collection.add(e)},error:function(e,t){Galaxy.modal.hide(),void 0!==t.responseJSON?h.default.error(t.responseJSON.err_msg):h.default.error("An error occurred.")}})}else h.default.error("Folder's name is missing.");return!1},serialize_new_folder:function(){return{name:r("input[name='Name']").val(),description:r("input[name='Description']").val()}},validate_new_folder:function(e){return""!==e.name},modalBulkImport:function(){if(0===this.findCheckedRows().length)h.default.info("You must select some datasets first.");else{var e=this;this.histories=new p.default.GalaxyHistories,this.histories.fetch().done(function(){var t=e.templateBulkImportInModal();e.modal=Galaxy.modal,e.modal.show({closing_events:!0,title:(0,l.default)("Import into History"),body:t({histories:e.histories.models}),buttons:{Import:function(){e.importAllIntoHistory()},Close:function(){Galaxy.modal.hide()}}})}).fail(function(e,t){void 0!==t.responseJSON?h.default.error(t.responseJSON.err_msg):h.default.error("An error occurred.")})}},importAllIntoHistory:function(){this.modal.disableButton("Import");var e=this.modal.$("input[name=history_name]").val(),t=this;if(""!==e)r.post(Galaxy.root+"api/histories",{name:e}).done(function(e){t.options.last_used_history_id=e.id,t.processImportToHistory(e.id,e.name)}).fail(function(e,t,n){h.default.error("An error occurred.")}).always(function(){t.modal.enableButton("Import")});else{var n=r("select[name=dataset_import_bulk] option:selected").val();this.options.last_used_history_id=n;var i=r("select[name=dataset_import_bulk] option:selected").text();this.processImportToHistory(n,i),this.modal.enableButton("Import")}},processImportToHistory:function(e,t){var n=[],i=[];this.findCheckedRows().each(function(){var e=r(this).closest("tr").data("id");"F"==e.substring(0,1)?i.push(e):n.push(e)});for(var o=[],s=n.length-1;s>=0;s--){var l=n[s],c=new p.default.HistoryItem;c.url=c.urlRoot+e+"/contents",c.content=l,c.source="library",o.push(c)}for(var s=i.length-1;s>=0;s--){var d=i[s],c=new p.default.HistoryItem;c.url=c.urlRoot+e+"/contents",c.content=d,c.source="library_folder",o.push(c)}this.initChainCallControl({length:o.length,action:"to_history",history_name:t}),a.getJSON(Galaxy.root+"history/set_as_current?id="+e),this.chainCallImportingIntoHistory(o,t)},updateProgress:function(){this.progress+=this.progressStep,r(".progress-bar-import").width(Math.round(this.progress)+"%");var e=Math.round(this.progress)+"% Complete";r(".completion_span").text(e)},download:function(e,t){var n=[],i=[];this.findCheckedRows().each(function(){var e=r(this).closest("tr").data("id");"F"==e.substring(0,1)?i.push(e):n.push(e)});var a=Galaxy.root+"api/libraries/datasets/download/"+t,o={ld_ids:n,folder_ids:i};this.processDownload(a,o,"get")},processDownload:function(e,t,n){if(e&&t){t="string"==typeof t?t:r.param(t);var i="";r.each(t.split("&"),function(){var e=this.split("=");i+='<input type="hidden" name="'+e[0]+'" value="'+e[1]+'" />'}),r('<form action="'+e+'" method="'+(n||"post")+'">'+i+"</form>").appendTo("body").submit().remove(),h.default.info("Your download will begin soon.")}else h.default.error("An error occurred.")},addFilesFromHistoryModal:function(){this.histories=new p.default.GalaxyHistories;var e=this;this.histories.fetch().done(function(){e.modal=Galaxy.modal;var t=e.templateAddFilesFromHistory();e.modal.show({closing_events:!0,title:(0,l.default)("Adding datasets from your history"),body:t({histories:e.histories.models}),buttons:{Add:function(){e.addAllDatasetsFromHistory()},Close:function(){Galaxy.modal.hide()}},closing_callback:function(){Galaxy.libraries.library_router.navigate("folders/"+e.id,{trigger:!0})}}),e.fetchAndDisplayHistoryContents(e.histories.models[0].id),r("#dataset_add_bulk").change(function(t){e.fetchAndDisplayHistoryContents(t.target.value)})}).fail(function(e,t){void 0!==t.responseJSON?h.default.error(t.responseJSON.err_msg):h.default.error("An error occurred.")})},importFilesFromPathModal:function(){var e=this;this.modal=Galaxy.modal;var t=this.templateImportPathModal();this.modal.show({closing_events:!0,title:(0,l.default)("Please enter paths to import"),body:t({}),buttons:{Import:function(){e.importFromPathsClicked(e)},Close:function(){Galaxy.modal.hide()}},closing_callback:function(){Galaxy.libraries.library_router.navigate("folders/"+e.id,{trigger:!0})}}),this.renderSelectBoxes()},fetchExtAndGenomes:function(){var e=this;d.default.get({url:Galaxy.root+"api/datatypes?extension_only=False",success:function(t){e.list_extensions=[];for(var n in t)e.list_extensions.push({id:t[n].extension,text:t[n].extension,description:t[n].description,description_url:t[n].description_url});e.list_extensions.sort(function(e,t){return e.id>t.id?1:e.id<t.id?-1:0}),e.list_extensions.unshift(e.auto)},cache:!0}),d.default.get({url:Galaxy.root+"api/genomes",success:function(t){e.list_genomes=[];for(var n in t)e.list_genomes.push({id:t[n][1],text:t[n][0]});e.list_genomes.sort(function(e,t){return e.id>t.id?1:e.id<t.id?-1:0})},cache:!0})},renderSelectBoxes:function(){var e=this;this.select_genome=new m.default.View({css:"library-genome-select",data:e.list_genomes,container:Galaxy.modal.$el.find("#library_genome_select"),value:"?"}),this.select_extension=new m.default.View({css:"library-extension-select",data:e.list_extensions,container:Galaxy.modal.$el.find("#library_extension_select"),value:"auto"})},importFilesFromGalaxyFolderModal:function(e){var t=this,n=this.templateBrowserModal();this.modal=Galaxy.modal,this.modal.show({closing_events:!0,title:(0,l.default)("Please select folders or files"),body:n({}),buttons:{Import:function(){t.importFromJstreePath(t,e)},Close:function(){Galaxy.modal.hide()}},closing_callback:function(){Galaxy.libraries.library_router.navigate("folders/"+t.id,{trigger:!0})}}),r(".libimport-select-all").bind("click",function(){r("#jstree_browser").jstree("check_all")}),r(".libimport-select-none").bind("click",function(){r("#jstree_browser").jstree("uncheck_all")}),this.renderSelectBoxes(),e.disabled_jstree_element="folders",this.renderJstree(e),r("input[type=radio]").change(function(n){"jstree-disable-folders"===n.target.value?(e.disabled_jstree_element="folders",t.renderJstree(e),r(".jstree-folders-message").hide(),r(".jstree-preserve-structure").hide(),r(".jstree-files-message").show()):"jstree-disable-files"===n.target.value&&(r(".jstree-files-message").hide(),r(".jstree-folders-message").show(),r(".jstree-preserve-structure").show(),e.disabled_jstree_element="files",t.renderJstree(e))})},renderJstree:function(e){this.options=i.extend(this.options,e);var t=e.source||"userdir",n=this.options.disabled_jstree_element;this.jstree=new p.default.Jstree,this.jstree.url=this.jstree.urlRoot+"?target="+t+"&format=jstree&disable="+n,this.jstree.fetch({success:function(e,t){r("#jstree_browser").jstree("destroy"),r("#jstree_browser").jstree({core:{data:e},plugins:["types","checkbox"],types:{folder:{icon:"jstree-folder"},file:{icon:"jstree-file"}},checkbox:{three_state:!1}})},error:function(e,t){void 0!==t.responseJSON?404001===t.responseJSON.err_code?h.default.warning(t.responseJSON.err_msg):h.default.error(t.responseJSON.err_msg):h.default.error("An error occurred.")}})},importFromPathsClicked:function(){var e=this.modal.$el.find(".preserve-checkbox").is(":checked"),t=this.modal.$el.find(".link-checkbox").is(":checked"),n=this.modal.$el.find(".spacetab-checkbox").is(":checked"),i=this.modal.$el.find(".posix-checkbox").is(":checked"),a=this.modal.$el.find(".tag-files").is(":checked"),o=this.select_extension.value(),s=this.select_genome.value(),l=r("textarea#import_paths").val(),c=[];if(l){this.modal.disableButton("Import"),l=l.split("\n");for(var d=l.length-1;d>=0;d--){var u=l[d].trim();0!==u.length&&c.push(u)}this.initChainCallControl({length:c.length,action:"adding_datasets"}),this.chainCallImportingFolders({paths:c,preserve_dirs:e,link_data:t,space_to_tab:n,to_posix_lines:i,source:"admin_path",file_type:o,tag_using_filenames:a,dbkey:s})}else h.default.info("Please enter a path relative to Galaxy root.")},initChainCallControl:function(e){var t;switch(e.action){case"adding_datasets":t=this.templateAddingDatasetsProgressBar(),this.modal.$el.find(".modal-body").html(t({folder_name:this.options.folder_name}));break;case"deleting_datasets":t=this.templateDeletingItemsProgressBar(),this.modal.$el.find(".modal-body").html(t());break;case"to_history":t=this.templateImportIntoHistoryProgressBar(),this.modal.$el.find(".modal-body").html(t({history_name:e.history_name}));break;default:Galaxy.emit.error("Wrong action specified.","datalibs")}this.progress=0,this.progressStep=100/e.length,this.options.chain_call_control.total_number=e.length,this.options.chain_call_control.failed_number=0},importFromJstreePath:function(e,t){var n=r("#jstree_browser").jstree().get_selected(!0),a=i.filter(n,function(e){return 0==e.state.disabled}),o=this.modal.$el.find(".preserve-checkbox").is(":checked"),s=this.modal.$el.find(".link-checkbox").is(":checked"),l=this.modal.$el.find(".spacetab-checkbox").is(":checked"),c=this.modal.$el.find(".posix-checkbox").is(":checked"),d=this.select_extension.value(),u=this.select_genome.value(),f=this.modal.$el.find(".tag-files").is(":checked"),p=a[0].type,g=[];if(a.length<1)h.default.info("Please select some items first.");else{this.modal.disableButton("Import");for(var m=a.length-1;m>=0;m--)void 0!==a[m].li_attr.full_path&&g.push(a[m].li_attr.full_path);if(this.initChainCallControl({length:g.length,action:"adding_datasets"}),"folder"===p){var _=t.source+"_folder";this.chainCallImportingFolders({paths:g,preserve_dirs:o,link_data:s,space_to_tab:l,to_posix_lines:c,source:_,file_type:d,dbkey:u,tag_using_filenames:f})}else if("file"===p){var _=t.source+"_file";this.chainCallImportingUserdirFiles({paths:g,file_type:d,dbkey:u,link_data:s,space_to_tab:l,to_posix_lines:c,source:_,tag_using_filenames:f})}}},fetchAndDisplayHistoryContents:function(e){var t=new p.default.HistoryContents({id:e}),n=this;t.fetch({success:function(t){var i=n.templateHistoryContents();n.histories.get(e).set({contents:t}),n.modal.$el.find("#selected_history_content").html(i({history_contents:t.models.reverse()})),n.modal.$el.find(".history-import-select-all").bind("click",function(){r("#selected_history_content [type=checkbox]").prop("checked",!0)}),n.modal.$el.find(".history-import-unselect-all").bind("click",function(){r("#selected_history_content [type=checkbox]").prop("checked",!1)})},error:function(e,t){void 0!==t.responseJSON?h.default.error(t.responseJSON.err_msg):h.default.error("An error occurred.")}})},addAllDatasetsFromHistory:function(){var e=this.modal.$el.find("#selected_history_content").find(":checked"),t=[],n=[],i=[];if(e.length<1)h.default.info("You must select some datasets first.");else{this.modal.disableButton("Add"),e.each(function(){var e=r(this).closest("li").data("id");if(e){var i=r(this).closest("li").data("name");t.push(e),n.push(i)}});for(var a=t.length-1;a>=0;a--){var o=t[a],s=new p.default.Item;s.url=Galaxy.root+"api/folders/"+this.options.id+"/contents","collection"===n[a]?s.set({from_hdca_id:o}):s.set({from_hda_id:o}),i.push(s)}this.initChainCallControl({length:i.length,action:"adding_datasets"}),this.chainCallAddingHdas(i)}},chainCallImportingIntoHistory:function(e,t){var n=this,i=e.pop();if(void 0===i)return 0===this.options.chain_call_control.failed_number?h.default.success("Selected datasets imported into history. Click this to start analyzing it.","",{onclick:function(){window.location=Galaxy.root}}):this.options.chain_call_control.failed_number===this.options.chain_call_control.total_number?h.default.error("There was an error and no datasets were imported into history."):this.options.chain_call_control.failed_number<this.options.chain_call_control.total_number&&h.default.warning("Some of the datasets could not be imported into history. Click this to see what was imported.","",{onclick:function(){window.location=Galaxy.root}}),Galaxy.modal.hide(),!0;r.when(i.save({content:i.content,source:i.source})).done(function(){n.updateProgress(),n.chainCallImportingIntoHistory(e,t)}).fail(function(){n.options.chain_call_control.failed_number+=1,n.updateProgress(),n.chainCallImportingIntoHistory(e,t)})},chainCallImportingUserdirFiles:function(e){var t=this,n=e.paths.pop();if(void 0===n)return 0===this.options.chain_call_control.failed_number?(h.default.success("Selected files imported into the current folder"),Galaxy.modal.hide()):h.default.error("An error occured."),!0;r.when(r.post(Galaxy.root+"api/libraries/datasets?encoded_folder_id="+t.id+"&source="+e.source+"&path="+n+"&file_type="+e.file_type+"&link_data="+e.link_data+"&space_to_tab="+e.space_to_tab+"&to_posix_lines="+e.to_posix_lines+"&dbkey="+e.dbkey+"&tag_using_filenames="+e.tag_using_filenames)).done(function(n){t.updateProgress(),t.chainCallImportingUserdirFiles(e)}).fail(function(){t.options.chain_call_control.failed_number+=1,t.updateProgress(),t.chainCallImportingUserdirFiles(e)})},chainCallImportingFolders:function(e){var t=this,n=e.paths.pop();if(void 0===n)return 0===this.options.chain_call_control.failed_number?(h.default.success("Selected folders and their contents imported into the current folder."),Galaxy.modal.hide()):h.default.error("An error occured."),!0;r.when(r.post(Galaxy.root+"api/libraries/datasets?encoded_folder_id="+t.id+"&source="+e.source+"&path="+n+"&preserve_dirs="+e.preserve_dirs+"&link_data="+e.link_data+"&to_posix_lines="+e.to_posix_lines+"&space_to_tab="+e.space_to_tab+"&file_type="+e.file_type+"&dbkey="+e.dbkey+"&tag_using_filenames="+e.tag_using_filenames)).done(function(n){t.updateProgress(),t.chainCallImportingFolders(e)}).fail(function(){t.options.chain_call_control.failed_number+=1,t.updateProgress(),t.chainCallImportingFolders(e)})},chainCallAddingHdas:function(e){var t=this;this.added_hdas=new p.default.Folder;var n=e.pop();if(void 0===n)return 0===this.options.chain_call_control.failed_number?h.default.success("Selected datasets from history added to the folder"):this.options.chain_call_control.failed_number===this.options.chain_call_control.total_number?h.default.error("There was an error and no datasets were added to the folder."):this.options.chain_call_control.failed_number<this.options.chain_call_control.total_number&&h.default.warning("Some of the datasets could not be added to the folder"),Galaxy.modal.hide(),this.added_hdas;r.when(n.save({from_hda_id:n.get("from_hda_id")})).done(function(n){Galaxy.libraries.folderListView.collection.add(n),t.updateProgress(),t.chainCallAddingHdas(e)}).fail(function(){t.options.chain_call_control.failed_number+=1,t.updateProgress(),t.chainCallAddingHdas(e)})},chainCallDeletingItems:function(e){var t=this;this.deleted_items=new p.default.Folder;var n=e.pop();if(void 0===n)return 0===this.options.chain_call_control.failed_number?h.default.success("Selected items were deleted."):this.options.chain_call_control.failed_number===this.options.chain_call_control.total_number?h.default.error("There was an error and no items were deleted. Please make sure you have sufficient permissions."):this.options.chain_call_control.failed_number<this.options.chain_call_control.total_number&&h.default.warning("Some of the items could not be deleted. Please make sure you have sufficient permissions."),Galaxy.modal.hide(),this.deleted_items;n.destroy().done(function(i){if(Galaxy.libraries.folderListView.collection.remove(n.id),t.updateProgress(),Galaxy.libraries.folderListView.options.include_deleted){var r=null;"folder"===i.type||"LibraryFolder"===i.model_class?r=new p.default.FolderAsModel(i):"file"===i.type||"LibraryDataset"===i.model_class?r=new p.default.Item(i):(Galaxy.emit.error("Unknown library item type found.","datalibs"),Galaxy.emit.error(i.type||i.model_class,"datalibs")),Galaxy.libraries.folderListView.collection.add(r)}t.chainCallDeletingItems(e)}).fail(function(){t.options.chain_call_control.failed_number+=1,t.updateProgress(),t.chainCallDeletingItems(e)})},checkIncludeDeleted:function(e){e.target.checked?Galaxy.libraries.folderListView.fetchFolder({include_deleted:!0}):Galaxy.libraries.folderListView.fetchFolder({include_deleted:!1})},deleteSelectedItems:function(){var e=[],t=[],n=this.findCheckedRows();if(0===n.length)h.default.info("You must select at least one item for deletion.");else{var i=this.templateDeletingItemsProgressBar();this.modal=Galaxy.modal,this.modal.show({closing_events:!0,title:(0,l.default)("Deleting selected items"),body:i({}),buttons:{Close:function(){Galaxy.modal.hide()}}}),this.options.chain_call_control.total_number=0,this.options.chain_call_control.failed_number=0,n.each(function(){var n=r(this).closest("tr").data("id");void 0!==n&&("F"==n.substring(0,1)?t.push(n):e.push(n))});var a=e.length+t.length;this.progressStep=100/a,this.progress=0;for(var o=[],s=e.length-1;s>=0;s--){var c=new p.default.Item({id:e[s]});o.push(c)}for(var s=t.length-1;s>=0;s--){var d=new p.default.FolderAsModel({id:t[s]});o.push(d)}this.options.chain_call_control.total_number=a,this.chainCallDeletingItems(o)}},showLocInfo:function(){var e=null,t=this;null!==Galaxy.libraries.libraryListView?(e=Galaxy.libraries.libraryListView.collection.get(this.options.parent_library_id),this.showLocInfoModal(e)):(e=new p.default.Library({id:this.options.parent_library_id}),e.fetch({success:function(){t.showLocInfoModal(e)},error:function(e,t){void 0!==t.responseJSON?h.default.error(t.responseJSON.err_msg):h.default.error("An error occurred.")}}))},showLocInfoModal:function(e){var t=this,n=this.templateLocInfoInModal();this.modal=Galaxy.modal,this.modal.show({closing_events:!0,title:(0,l.default)("Location Details"),body:n({library:e,options:t.options}),buttons:{Close:function(){Galaxy.modal.hide()}}})},showImportModal:function(e){switch(e.source){case"history":this.addFilesFromHistoryModal();break;case"importdir":this.importFilesFromGalaxyFolderModal({source:"importdir"});break;case"path":this.importFilesFromPathModal();break;case"userdir":this.importFilesFromGalaxyFolderModal({source:"userdir"});break;default:Galaxy.libraries.library_router.back(),h.default.error("Invalid import source.")}},showPageSizePrompt:function(e){e.preventDefault();var t=prompt("How many items per page do you want to see?",Galaxy.libraries.preferences.get("folder_page_size"));null!=t&&t==parseInt(t)&&(Galaxy.libraries.preferences.set({folder_page_size:parseInt(t)}),Galaxy.libraries.folderListView.render({id:this.options.id,show_page:1}))},findCheckedRows:function(){return r("#folder_list_body").find(":checked")},templateToolBar:function(){return i.template(['<div class="library_style_container">','<div id="library_toolbar">','<form class="form-inline" role="form">',"<span><strong>DATA LIBRARIES</strong></span>",'<span class="library-paginator folder-paginator"></span>','<div class="checkbox toolbar-item logged-dataset-manipulation" style="height: 20px; display:none;">',"<label>",'<input id="include_deleted_datasets_chk" type="checkbox">include deleted</input>',"</label>","</div>",'<button style="display:none;" data-toggle="tooltip" data-placement="top" title="Create New Folder" id="toolbtn_create_folder" class="btn btn-default primary-button add-library-items toolbar-item" type="button">','<span class="fa fa-plus"></span><span class="fa fa-folder"></span>',"</button>","<% if(mutiple_add_dataset_options) { %>",'<div class="btn-group add-library-items" style="display:none;">','<button title="Add Datasets to Current Folder" id="" type="button" class="primary-button dropdown-toggle" data-toggle="dropdown">','<span class="fa fa-plus"></span><span class="fa fa-file"></span><span class="caret"></span>',"</button>",'<ul class="dropdown-menu" role="menu">','<li><a href="#folders/<%= id %>/import/history"> from History</a></li>',"<% if(Galaxy.config.user_library_import_dir !== null) { %>",'<li><a href="#folders/<%= id %>/import/userdir"> from User Directory</a></li>',"<% } %>","<% if(Galaxy.config.allow_library_path_paste) { %>",'<li class="divider"></li>','<li class="dropdown-header">Admins only</li>',"<% if(Galaxy.config.library_import_dir !== null) { %>",'<li><a href="#folders/<%= id %>/import/importdir">from Import Directory</a></li>',"<% } %>","<% if(Galaxy.config.allow_library_path_paste) { %>",'<li><a href="#folders/<%= id %>/import/path">from Path</a></li>',"<% } %>","<% } %>","</ul>","</div>","<% } else { %>",'<a  data-placement="top" title="Add Datasets to Current Folder" style="display:none;" class="btn btn-default add-library-items" href="#folders/<%= id %>/import/history" role="button">','<span class="fa fa-plus"></span><span class="fa fa-file"></span>',"</a>","<% } %>",'<button data-toggle="tooltip" data-placement="top" title="Import selected datasets into history" id="toolbtn_bulk_import" class="primary-button dataset-manipulation" style="margin-left: 0.5em; display:none;" type="button">','<span class="fa fa-book"></span>',"&nbsp;to History","</button>",'<div class="btn-group dataset-manipulation" style="margin-left: 0.5em; display:none; ">','<button title="Download selected items as archive" type="button" class="primary-button dropdown-toggle" data-toggle="dropdown">','<span class="fa fa-download"></span> Download <span class="caret"></span>',"</button>",'<ul class="dropdown-menu" role="menu">','<li><a href="#/folders/<%= id %>/download/tgz">.tar.gz</a></li>','<li><a href="#/folders/<%= id %>/download/tbz">.tar.bz</a></li>','<li><a href="#/folders/<%= id %>/download/zip">.zip</a></li>',"</ul>","</div>",'<button data-toggle="tooltip" data-placement="top" title="Mark selected items deleted" id="toolbtn_bulk_delete" class="primary-button logged-dataset-manipulation" style="margin-left: 0.5em; display:none; " type="button">','<span class="fa fa-times"></span> Delete</button>','<button data-id="<%- id %>" data-toggle="tooltip" data-placement="top" title="Show location details" class="primary-button toolbtn-show-locinfo" style="margin-left: 0.5em;" type="button">','<span class="fa fa-info-circle"></span>',"&nbsp;Details","</button>",'<span class="help-button" data-toggle="tooltip" data-placement="top" title="See this screen annotated">','<a href="https://galaxyproject.org/data-libraries/screen/folder-contents/" target="_blank">','<button class="primary-button" type="button">','<span class="fa fa-question-circle"></span>',"&nbsp;Help","</button>","</a>","</span>","</div>","</form>",'<div id="folder_items_element">',"</div>",'<div class="folder-paginator paginator-bottom"></div>',"</div>"].join(""))},templateLocInfoInModal:function(){return i.template(["<div>",'<table class="grid table table-condensed">',"<thead>",'<th style="width: 25%;">library</th>',"<th></th>","</thead>","<tbody>","<tr>","<td>name</td>",'<td><%- library.get("name") %></td>',"</tr>",'<% if(library.get("description") !== "") { %>',"<tr>","<td>description</td>",'<td><%- library.get("description") %></td>',"</tr>","<% } %>",'<% if(library.get("synopsis") !== "") { %>',"<tr>","<td>synopsis</td>",'<td><%- library.get("synopsis") %></td>',"</tr>","<% } %>",'<% if(library.get("create_time_pretty") !== "") { %>',"<tr>","<td>created</td>",'<td><span title="<%- library.get("create_time") %>"><%- library.get("create_time_pretty") %></span></td>',"</tr>","<% } %>","<tr>","<td>id</td>",'<td><%- library.get("id") %></td>',"</tr>","</tbody>","</table>",'<table class="grid table table-condensed">',"<thead>",'<th style="width: 25%;">folder</th>',"<th></th>","</thead>","<tbody>","<tr>","<td>name</td>","<td><%- options.folder_name %></td>","</tr>",'<% if(options.folder_description !== "") { %>',"<tr>","<td>description</td>","<td><%- options.folder_description %></td>","</tr>","<% } %>","<tr>","<td>id</td>","<td><%- options.id %></td>","</tr>","</tbody>","</table>","</div>"].join(""))},templateNewFolderInModal:function(){return i.template(['<div id="new_folder_modal">',"<form>",'<input type="text" name="Name" value="" placeholder="Name" autofocus>','<input type="text" name="Description" value="" placeholder="Description">',"</form>","</div>"].join(""))},templateBulkImportInModal:function(){return i.template(["<div>",'<div class="library-modal-item">',"Select history: ",'<select id="dataset_import_bulk" name="dataset_import_bulk" style="width:50%; margin-bottom: 1em; " autofocus>',"<% _.each(histories, function(history) { %>",'<option value="<%= _.escape(history.get("id")) %>"><%= _.escape(history.get("name")) %></option>',"<% }); %>","</select>","</div>",'<div class="library-modal-item">',"or create new: ",'<input type="text" name="history_name" value="" placeholder="name of the new history" style="width:50%;">',"</input>","</div>","</div>"].join(""))},templateImportIntoHistoryProgressBar:function(){return i.template(['<div class="import_text">',"Importing selected items to history <b><%= _.escape(history_name) %></b>","</div>",'<div class="progress">','<div class="progress-bar progress-bar-import" role="progressbar" aria-valuenow="0" aria-valuemin="0" aria-valuemax="100" style="width: 00%;">','<span class="completion_span">0% Complete</span>',"</div>","</div>"].join(""))},templateAddingDatasetsProgressBar:function(){return i.template(['<div class="import_text">',"Adding selected datasets to library folder <b><%= _.escape(folder_name) %></b>","</div>",'<div class="progress">','<div class="progress-bar progress-bar-import" role="progressbar" aria-valuenow="0" aria-valuemin="0" aria-valuemax="100" style="width: 00%;">','<span class="completion_span">0% Complete</span>',"</div>","</div>"].join(""))},templateDeletingItemsProgressBar:function(){return i.template(['<div class="import_text">',"</div>",'<div class="progress">','<div class="progress-bar progress-bar-import" role="progressbar" aria-valuenow="0" aria-valuemin="0" aria-valuemax="100" style="width: 00%;">','<span class="completion_span">0% Complete</span>',"</div>","</div>"].join(""))},templateBrowserModal:function(){return i.template(['<div id="file_browser_modal">','<div class="alert alert-info jstree-files-message">All files you select will be imported into the current folder ignoring their folder structure.</div>','<div class="alert alert-info jstree-folders-message" style="display:none;">All files within the selected folders and their subfolders will be imported into the current folder.</div>','<div style="margin-bottom:1em;">','<label title="Switch to selecting files" class="radio-inline import-type-switch">','<input type="radio" name="jstree-radio" value="jstree-disable-folders" checked="checked"> Choose Files',"</label>",'<label title="Switch to selecting folders" class="radio-inline import-type-switch">','<input type="radio" name="jstree-radio" value="jstree-disable-files"> Choose Folders',"</label>","</div>",'<div style="margin-bottom:1em;">','<label class="checkbox-inline jstree-preserve-structure" style="display:none;">','<input class="preserve-checkbox" type="checkbox" value="preserve_directory_structure">',"Preserve directory structure","</label>",'<label class="checkbox-inline">','<input class="link-checkbox" type="checkbox" value="link_files">',"Link files instead of copying","</label>",'<label class="checkbox-inline">','<input class="posix-checkbox" type="checkbox" value="to_posix_lines" checked="checked">',"Convert line endings to POSIX","</label>",'<label class="checkbox-inline">','<input class="spacetab-checkbox" type="checkbox" value="space_to_tab">',"Convert spaces to tabs","</label>","</div>",'<button title="Select all files" type="button" class="button primary-button libimport-select-all">',"Select all","</button>",'<button title="Select no files" type="button" class="button primary-button libimport-select-none">',"Unselect all","</button>","<hr />",'<div id="jstree_browser">',"</div>","<hr />","<p>You can set extension type and genome for all imported datasets at once:</p>","<div>",'Type: <span id="library_extension_select" class="library-extension-select" />','Genome: <span id="library_genome_select" class="library-genome-select" />',"</div>","<br>","<div>",'<label class="checkbox-inline tag-files">',"Tag datasets based on file names",'<input class="tag-files" type="checkbox" value="tag_using_filenames">',"</label>","</div>","</div>"].join(""))},templateImportPathModal:function(){return i.template(['<div id="file_browser_modal">','<div class="alert alert-info jstree-folders-message">All files within the given folders and their subfolders will be imported into the current folder.</div>','<div style="margin-bottom: 0.5em;">','<label class="checkbox-inline">','<input class="preserve-checkbox" type="checkbox" value="preserve_directory_structure">',"Preserve directory structure","</label>",'<label class="checkbox-inline">','<input class="link-checkbox" type="checkbox" value="link_files">',"Link files instead of copying","</label>","<br>",'<label class="checkbox-inline">','<input class="posix-checkbox" type="checkbox" value="to_posix_lines" checked="checked">',"Convert line endings to POSIX","</label>",'<label class="checkbox-inline">','<input class="spacetab-checkbox" type="checkbox" value="space_to_tab">',"Convert spaces to tabs","</label>","</div>",'<textarea id="import_paths" class="form-control" rows="5" placeholder="Absolute paths (or paths relative to Galaxy root) separated by newline" autofocus></textarea>',"<hr />","<p>You can set extension type and genome for all imported datasets at once:</p>","<div>",'Type: <span id="library_extension_select" class="library-extension-select" />','Genome: <span id="library_genome_select" class="library-genome-select" />',"</div>","<div>",'<label class="checkbox-inline tag-files">',"Tag datasets based on file names",'<input class="tag-files" type="checkbox" value="tag_using_filenames">',"</label>","</div>","</div>"].join(""))},templateAddFilesFromHistory:function(){return i.template(['<div id="add_files_modal">',"<div>","1.&nbsp;Select history:&nbsp;",'<select id="dataset_add_bulk" name="dataset_add_bulk" style="width:66%; "> ',"<% _.each(histories, function(history) { %>",'<option value="<%= _.escape(history.get("id")) %>"><%= _.escape(history.get("name")) %></option>',"<% }); %>","</select>","</div>","<br/>",'<div id="selected_history_content">',"</div>","</div>"].join(""))},templateHistoryContents:function(){return i.template(["<p>2.&nbsp;Choose the datasets to import:</p>","<div>",'<button title="Select all datasets" type="button" class="button primary-button history-import-select-all">',"Select all","</button>",'<button title="Select all datasets" type="button" class="button primary-button 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Collection Tools">','<%= _.escape(history_item.get("hid")) %>: ','<%= item_name.length > 75 ? _.escape("...".concat(item_name.substr(-75))) : _.escape(item_name) %> (Dataset Collection of type <%= _.escape(collection_type) %> not supported.)',"</span>","</li>","<% } %>",'<% } else if (history_item.get("visible") === true && history_item.get("state") === "ok") { %>','<li data-id="<%= _.escape(history_item.get("id")) %>" data-name="<%= _.escape(history_item.get("type")) %>">','<label title="<%= _.escape(item_name) %>">','<input style="margin: 0;" type="checkbox"> <%= _.escape(history_item.get("hid")) %>: ','<%= item_name.length > 75 ? _.escape("...".concat(item_name.substr(-75))) : _.escape(item_name) %>',"</label>","</li>","<% } %>","<% } %>","<% }); %>","</ul>"].join(""))},templatePaginator:function(){return i.template(['<ul class="pagination pagination-sm">',"<% if ( ( show_page - 1 ) > 0 ) { %>","<% if ( ( show_page - 1 ) > page_count ) { %>",'<li><a href="#folders/<%= id 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page_count ) %>"><span class="fa fa-angle-double-right"></span></a></li>',"<% } else { %>",'<li class="disabled"><a href="#folders/<%= id %>/page/<% print( show_page  ) %>"><% print( show_page + 1 ) %></a></li>','<li class="disabled"><a href="#folders/<%= id %>/page/<% print( page_count ) %>"><span class="fa fa-angle-double-right"></span></a></li>',"<% } %>","</ul>","<span>",' <%- items_shown %> items shown <a href="" data-toggle="tooltip" data-placement="top" title="currently <%- folder_page_size %> per page" class="page_size_prompt">(change)</a>',"</span>","<span>"," <%- total_items_count %> total","</span>"].join(""))}});t.default={FolderToolbarView:_}}).call(t,n(2),n(1),n(0),n(0))},function(e,t,n){"use strict";(function(e,i,r){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=n(7),s=a(o),l=n(18),c=a(l),d=n(12),u=a(d),h=e.View.extend({el:"#center",model:null,options:{},events:{"click .toolbtn_save_permissions":"savePermissions"},initialize:function(e){this.options=i.extend(this.options,e),this.options.id&&this.fetchLibrary()},fetchLibrary:function(e){this.options=i.extend(this.options,e),this.model=new c.default.Library({id:this.options.id});var t=this;this.model.fetch({success:function(){t.options.show_permissions&&t.showPermissions()},error:function(e,t){void 0!==t.responseJSON?s.default.error(t.responseJSON.err_msg+" Click this to go back.","",{onclick:function(){Galaxy.libraries.library_router.back()}}):s.default.error("An error occurred. 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class="ui-widget" >','<input class="search-box-input" id="search_box" name="search" data-shedurl="<%= tool_shed.replace(/%2f/g, "/") %>" placeholder="Search repositories by name or id" size="60" type="text" />',"</span>","</div>",'<div style="clear: both; margin-top: 1em;">','<table class="grid">','<thead id="grid-table-header">',"<tr>",'<th style="width: 10%;">Owner</th>','<th style="width: 15%;">Name</th>',"<th>Synopsis</th>",'<th style="width: 10%;">Type</th>',"</tr>","</thead>",'<% _.each(category.get("repositories"), function(repository) { %>',"<tr>","<td><%= repository.owner %></td>","<td>",'<div style="float: left; margin-left: 1px;" class="menubutton split">','<a href="#/repository/s/<%= tool_shed %>/r/<%= repository.id %>"><%= repository.name %></a>',"</div>","</td>","<td><%= repository.description %></td>","<td><%= repository.type %></td>","</tr>","<% }); %>","</table>","</div>","</div>"].join(""))});t.default={Category:d}}).call(t,n(2),n(1),n(0))},function(e,t,n){"use 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e=this;r("#changeset").on("change",function(){e.options.current_changeset=r("#changeset").find("option:selected").text(),e.options.current_metadata=e.options.repository.metadata[e.options.current_changeset],e.checkInstalled(e.options.current_metadata),e.reDraw(e.options)}),r("#tool_panel_section_select").on("change",function(){e.tpsSelection()}),r("#install_repository").on("click",function(t){r("#repository_installation");t.preventDefault();var n={};n.repositories=JSON.stringify([[r("#install_repository").attr("data-tsrid"),r("#changeset").find("option:selected").val()]]),n.tool_shed_repository_ids=JSON.stringify([r("#install_repository").attr("data-tsrid")]),n.tool_shed_url=e.model.tool_shed_url,n.install_tool_dependencies=r("#install_tool_dependencies").val(),n.install_repository_dependencies=r("#install_repository_dependencies").val(),n.install_resolver_dependencies=r("#install_resolver_dependencies").val();e.panelSelect(n);n.tool_panel_section=JSON.stringify(e.panelSelect(n)),n.shed_tool_conf=r("select[name='shed_tool_conf']").find("option:selected").val(),n.changeset=r("#changeset").find("option:selected").val();var i=r("#repository_installation").attr("action");e.prepareInstall(n,i)}),r("#queue_install").on("click",function(t){e.options.current_changeset=r("#changeset").find("option:selected").text(),e.options.current_metadata=e.options.repository.metadata[e.options.current_changeset];var 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t=r(this).attr("data-guid"),n=(r(this).attr("data-clean"),r(this).attr("data-name")),i=r(this).attr("data-desc"),a=e.model.tool_shed_url,o=r("#repository_details").attr("data-tsrid"),s=r("#changeset").find("option:selected").val(),l=Galaxy.root+"api/tool_shed/tool_json",c={guid:t,tool_shed_url:a,tsr_id:o,changeset:s};r.get(l,c,function(e){e.cls="ui-portlet-plain";var t=new p.default(e);d.default.deepeach(e.inputs,function(e){e.type&&-1!=["data","data_collection"].indexOf(e.type)&&(e.type="hidden",e.info="Data input '"+e.name+"' ("+d.default.textify(e.extensions)+")")});var r=new h.default.View,a="<u>"+n+"</u> "+i;r.show({closing_events:!0,title:a,body:t.$el,buttons:{Close:function(){r.hide()}}})})})},checkInstalled:function(e){var t=this,n={name:e.name,owner:e.owner},i=!1;t.repoQueued(e);r.get(Galaxy.root+"api/tool_shed_repositories",n,function(n){for(var a=0;a<n.length;a++){var o=n[a],s=!o.deleted&&!o.uninstalled,l=o.changeset_revision==e.changeset_revision||o.installed_changeset_revision==e.changeset_revision;o.name==e.repository.name&&o.owner==e.repository.owner&&s&&l&&(i=!0),i?(r("#install_repository").prop("disabled",!0),r("#install_repository").val("This revision is already installed")):(r("#install_repository").prop("disabled",!1),r("#install_repository").val("Install this revision"))}t.repoQueued(e)||i?(r("#queue_install").hide(),r("#queue_install").val("This revision is already in the queue")):(r("#queue_install").show(),r("#queue_install").val("Install this revision later"))})},panelSelect:function(e){var t={};return r("#tool_panel_section_select").length?e.tool_panel_section_id=r("#tool_panel_section_select").find("option:selected").val():e.new_tool_panel_section=r("#new_tool_panel_section").val(),r(".tool_panel_section_picker").each(function(){var e=r(this).attr("name"),n=r(this).attr("data-toolguid");t[n]="tool_panel_section_id"===e?{tool_panel_section:r(this).find("option:selected").val(),action:"append"}:{tool_panel_section:r(this).val(),action:"create"}}),t},reDraw:function(e){this.$el.empty(),this.render(e)},repoQueued:function(e){var t=this;if(localStorage.repositories){var n,i=t.queueKey(e);return localStorage.repositories&&(n=JSON.parse(localStorage.repositories)),!(!n||!n.hasOwnProperty(i))}},queueKey:function(e){var t=this.model.tool_shed_url;return"/"==t.substr(-1)&&(t=t.substr(0,t.length-1)),t+"|"+e.repository_id+"|"+e.changeset_revision},tpsSelection:function(){new_tps=r("#tool_panel_section_select").find("option:selected").val(),r('.tool_panel_section_picker[default="active"]').each(function(){r(this).val(new_tps)})},prepareInstall:function(e,t){var n=this;r.post(t,e,function(e){var t=JSON.parse(e);n.doInstall(t)})},doInstall:function(t){var n=Galaxy.root+"admin_toolshed/install_repositories",i=t.repositories,a="status/r/"+i.join("|");r.post(n,t,function(e){console.log("Initializing repository installation succeeded")}),e.history.navigate(a,{trigger:!0,replace:!0})},templateRepoDetails:i.template(['<div class="unified-panel-header" id="panel_header" unselectable="on">','<div class="unified-panel-header-inner">Repository information for <strong><%= repository.name %></strong> from <strong><%= repository.owner %></strong></div>','<div class="unified-panel-header-inner" style="position: absolute; right: 5px; top: 0px;"><a href="#/queue">Repository Queue (<%= queue %>)</a></div>',"</div>",'<div class="unified-panel-body" id="repository_details" data-tsrid="<%= repository.id %>">','<form id="repository_installation" name="install_repository" method="post" action="<%= api_url %>">','<input type="hidden" id="repositories" name="<%= repository.id %>" value="ID" />','<input type="hidden" id="tool_shed_url" name="tool_shed_url" 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style="padding-left: 40px;">Name</th>',"<th>Description</th>","<th>Version</th>","<th><%= tps_template_global_select({tps: panel_section_dict, tps_select_options: tps_select_options}) %></tr>","</thead>",'<tbody id="tools_in_repo">',"<% _.each(current_metadata.tools, function(tool) { %>",'<tr id="libraryItem-<%= tool.clean %>" class="tool_row" style="display: table-row;" style="width: 15%">','<td style="padding-left: 40px;">','<div id="tool-<%= tool.clean %>" class="menubutton split popup" style="float: left;">','<a class="tool_form view-info" data-toggle="modal" data-target="toolform_<%= tool.clean %>" data-clean="<%= tool.clean %>" data-guid="<%= tool.guid %>" data-name="<%= tool.name %>" data-desc="<%= tool.description %>"><%= tool.name %></a>',"</div>","</td>","<td><%= tool.description %></td>",'<td style="width: 15%"><%= tool.version %></td>','<td style="width: 35%" id="tool_tps_<%= tool.clean %>">',"<%= tps_template_tool_select({tool: tool, tps: panel_section_dict, 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class="child_dependencies">',"<% _.each(repository_dependencies, function(dependency) { %>","<% dependency.repository_dependency_template = repository_dependency_template; %>","<%= repository_dependency_template(dependency) %>","<% }); %>","</ul>","<% } %>","</li>"].join("")),templateShedToolConf:i.template(['<div class="toolFormTitle">Shed tool configuration file:</div>','<div class="toolFormBody">','<div class="form-row">','<select name="shed_tool_conf">',"<% _.each(shed_tool_confs.options, function(conf) { %>",'<option value="<%= conf.value %>"><%= conf.label %></option>',"<% }); %>","</select>",'<div class="toolParamHelp" style="clear: both;">Select the file whose <b>tool_path</b> setting you want used for installing repositories.</div>',"</div>","</div>"].join("")),templateToolDependency:i.template(["<% if (has_repository_dependencies) { %>","<% _.each(repository_dependencies, function(dependency) { %>","<% if (dependency.includes_tool_dependencies) { %>","<% dependency.tool_dependency_template = tool_dependency_template %>","<%= tool_dependency_template(dependency) %>","<% } %>","<% }); %>","<% } %>"].join("")),templateGlobalSectionCreate:i.template(['<div id="tool_panel_section">','<div class="form-row" id="new_tps">','<input id="new_tool_panel_section" name="new_tool_panel_section" type="textfield" value="" size="40"/>','<input class="btn btn-primary" type="button" id="select_existing" value="Select existing" />','<div class="toolParamHelp" style="clear: both;">',"Add a new tool panel section to contain the installed tools (optional).","</div>","</div>","</div>"].join("")),templateGlobalSectionSelect:i.template(['<div id="tool_panel_section">','<div class="toolFormTitle">Tool Panel Section</div>','<div class="toolFormBody">','<div class="tab-pane" id="select_tps">','<select name="<%= name %>" id="<%= tps.id %>">',"<%= tps_select_options({sections: tps.sections}) %>","</select>",'<input class="btn btn-primary" type="button" id="create_new" value="Create new" />','<div class="toolParamHelp" style="clear: both;">',"Select an existing tool panel section to contain the installed tools (optional).","</div>","</div>","</div>","</div>"].join("")),templateToolSectionCreate:i.template(['<div id="new_tps_<%= tool.clean %>" data-clean="<%= tool.clean %>" class="form-row">','<input data-toolguid="<%= tool.guid %>" class="tool_panel_section_picker" size="40" name="new_tool_panel_section" id="new_tool_panel_section_<%= tool.clean %>" type="text">','<input id="per_tool_select_<%= tool.clean %>" class="btn btn-primary" data-toolguid="<%= tool.guid %>" value="Select existing" id="select_existing_<%= tool.clean %>" type="button">',"</div>"].join("")),templateToolSectionSelect:i.template(['<div id="select_tps_<%= tool.clean %>" data-clean="<%= tool.clean %>" class="tps_creator">','<select default="active" style="width: 30em;" data-toolguid="<%= tool.guid %>" class="tool_panel_section_picker" name="tool_panel_section_id" 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r=Object();r.install_tool_dependencies=t.install_tool_dependencies,r.install_repository_dependencies=t.install_repository_dependencies,r.install_resolver_dependencies=t.install_resolver_dependencies,r.tool_panel_section=t.tool_panel_section,r.shed_tool_conf=t.shed_tool_conf,r.repositories=JSON.stringify([[t.repository.id,t.changeset_revision]]),r.tool_shed_repository_ids=JSON.stringify([t.repository.id]),r.tool_shed_url=n.split("|")[0],r.changeset=t.changeset_revision;var a=Galaxy.root+"api/tool_shed_repositories/install?async=True";if(i("#queued_repository_"+t.repository.id).remove(),localStorage.repositories){void 0===n&&(n=u.default.queueKey(t));var o=JSON.parse(localStorage.repositories);o.hasOwnProperty(n)&&(delete o[n],localStorage.repositories=JSON.stringify(o))}i.post(a,r,function(t){var n=JSON.parse(t),r=n.repositories,a="status/r/"+r.join("|");i.post(Galaxy.root+"admin_toolshed/install_repositories",n,function(e){console.log("Initializing repository installation 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h.DIALOG_EMBED_PAGE:g=r(h.ITEM_PAGE);break;case h.DIALOG_EMBED_VISUALIZATION:g=r(h.ITEM_VISUALIZATION)}var m=new d.default({url_base:g.list_ajax_url,embedded:!0});Galaxy.modal.show({title:"Insert Link to "+g.singular,body:e("<div/>").append(m.$el).append(e("<div/>").append('<input id="make-importable" type="checkbox" checked/>').append("Make the selected "+g.plural.toLowerCase()+" accessible so that they can viewed by everyone.")),closing_events:!0,buttons:{Embed:function(){var t=!1;null!=e("#make-importable:checked").val()&&(t=!0),m.$("input[name=id]:checked").each(function(){var n=e(this).val(),i=e("label[for='"+n+"']:first").text();t&&a(g.controller,n,g.singular);var r=g.iclass+"-"+n,o=["<div id='",r,"' class='embedded-item ",g.singular.toLowerCase()," placeholder'>","<p class='title'>","Embedded Galaxy ",g.singular," '",i,"'","</p>","<p class='content'>","[Do not edit this block; Galaxy will fill it in with the annotated ",g.singular.toLowerCase()," when it is 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t=0;t<e.length;++t)WYMeditor.console[e[t]]=function(){}}}(),jQuery.extend(WYMeditor,{VERSION:"0.5-rc1",INSTANCES:[],STRINGS:[],SKINS:[],NAME:"name",INDEX:"{Wym_Index}",WYM_INDEX:"wym_index",BASE_PATH:"{Wym_Base_Path}",CSS_PATH:"{Wym_Css_Path}",WYM_PATH:"{Wym_Wym_Path}",SKINS_DEFAULT_PATH:"skins/",SKINS_DEFAULT_CSS:"skin.css",SKINS_DEFAULT_JS:"skin.js",LANG_DEFAULT_PATH:"lang/",IFRAME_BASE_PATH:"{Wym_Iframe_Base_Path}",IFRAME_DEFAULT:"iframe/default/",JQUERY_PATH:"{Wym_Jquery_Path}",DIRECTION:"{Wym_Direction}",LOGO:"{Wym_Logo}",TOOLS:"{Wym_Tools}",TOOLS_ITEMS:"{Wym_Tools_Items}",TOOL_NAME:"{Wym_Tool_Name}",TOOL_TITLE:"{Wym_Tool_Title}",TOOL_CLASS:"{Wym_Tool_Class}",CLASSES:"{Wym_Classes}",CLASSES_ITEMS:"{Wym_Classes_Items}",CLASS_NAME:"{Wym_Class_Name}",CLASS_TITLE:"{Wym_Class_Title}",CONTAINERS:"{Wym_Containers}",CONTAINERS_ITEMS:"{Wym_Containers_Items}",CONTAINER_NAME:"{Wym_Container_Name}",CONTAINER_TITLE:"{Wym_Containers_Title}",CONTAINER_CLASS:"{Wym_Container_Class}",HTML:"{Wym_Html}",IFRAME:"{Wym_Iframe}",STATUS:"{Wym_Status}",DIALOG_TITLE:"{Wym_Dialog_Title}",DIALOG_BODY:"{Wym_Dialog_Body}",STRING:"string",BODY:"body",DIV:"div",P:"p",H1:"h1",H2:"h2",H3:"h3",H4:"h4",H5:"h5",H6:"h6",PRE:"pre",BLOCKQUOTE:"blockquote",A:"a",BR:"br",IMG:"img",TABLE:"table",TD:"td",TH:"th",UL:"ul",OL:"ol",LI:"li",CLASS:"class",HREF:"href",SRC:"src",TITLE:"title",ALT:"alt",DIALOG_LINK:"Link",DIALOG_IMAGE:"Image",DIALOG_TABLE:"Table",DIALOG_PASTE:"Paste_From_Word",BOLD:"Bold",ITALIC:"Italic",CREATE_LINK:"CreateLink",INSERT_IMAGE:"InsertImage",INSERT_TABLE:"InsertTable",INSERT_HTML:"InsertHTML",PASTE:"Paste",INDENT:"Indent",OUTDENT:"Outdent",TOGGLE_HTML:"ToggleHtml",FORMAT_BLOCK:"FormatBlock",PREVIEW:"Preview",UNLINK:"Unlink",INSERT_UNORDEREDLIST:"InsertUnorderedList",INSERT_ORDEREDLIST:"InsertOrderedList",MAIN_CONTAINERS:new Array("p","h1","h2","h3","h4","h5","h6","pre","blockquote"),BLOCKS:new Array("address","blockquote","div","dl","fieldset","form","h1","h2","h3","h4","h5","h6","hr","noscript","ol","p","pre","table","ul","dd","dt","li","tbody","td","tfoot","th","thead","tr"),KEY:{BACKSPACE:8,ENTER:13,END:35,HOME:36,LEFT:37,UP:38,RIGHT:39,DOWN:40,CURSOR:new Array(37,38,39,40),DELETE:46},NODE:{ELEMENT:1,ATTRIBUTE:2,TEXT:3},editor:function(e,t){this._index=WYMeditor.INSTANCES.push(this)-1,this._element=e,this._options=t,this._html=jQuery(e).val(),this._options.html&&(this._html=this._options.html),this._options.basePath=this._options.basePath||this.computeBasePath(),this._options.skinPath=this._options.skinPath||this._options.basePath+WYMeditor.SKINS_DEFAULT_PATH+this._options.skin+"/",this._options.wymPath=this._options.wymPath||this.computeWymPath(),this._options.langPath=this._options.langPath||this._options.basePath+WYMeditor.LANG_DEFAULT_PATH,this._options.iframeBasePath=this._options.iframeBasePath||this._options.basePath+WYMeditor.IFRAME_DEFAULT,this._options.jQueryPath=this._options.jQueryPath||this.computeJqueryPath(),this.init()}}),jQuery.fn.wymeditor=function(e){return e=jQuery.extend({html:"",basePath:!1,skinPath:!1,wymPath:!1,iframeBasePath:!1,jQueryPath:!1,styles:!1,stylesheet:!1,skin:"default",initSkin:!0,loadSkin:!0,lang:"en",direction:"ltr",boxHtml:"<div class='wym_box'><div class='wym_area_top'>"+WYMeditor.TOOLS+"</div><div class='wym_area_left'></div><div class='wym_area_right'>"+WYMeditor.CONTAINERS+WYMeditor.CLASSES+"</div><div class='wym_area_main'>"+WYMeditor.HTML+WYMeditor.IFRAME+WYMeditor.STATUS+"</div><div class='wym_area_bottom'>"+WYMeditor.LOGO+"</div></div>",logoHtml:"<a class='wym_wymeditor_link' href='http://www.wymeditor.org/'>WYMeditor</a>",iframeHtml:"<div class='wym_iframe wym_section'><iframe src='/page/get_editor_iframe' onload='this.contentWindow.parent.WYMeditor.INSTANCES["+WYMeditor.INDEX+"].initIframe(this)'></iframe></div>",editorStyles:[],toolsHtml:"<div class='wym_tools wym_section'><h2>{Tools}</h2><ul>"+WYMeditor.TOOLS_ITEMS+"</ul></div>",toolsItemHtml:"<li class='"+WYMeditor.TOOL_CLASS+"'><a href='#' name='"+WYMeditor.TOOL_NAME+"' title='"+WYMeditor.TOOL_TITLE+"'>"+WYMeditor.TOOL_TITLE+"</a></li>",toolsItems:[{name:"Bold",title:"Strong",css:"wym_tools_strong"},{name:"Italic",title:"Emphasis",css:"wym_tools_emphasis"},{name:"Superscript",title:"Superscript",css:"wym_tools_superscript"},{name:"Subscript",title:"Subscript",css:"wym_tools_subscript"},{name:"InsertOrderedList",title:"Ordered_List",css:"wym_tools_ordered_list"},{name:"InsertUnorderedList",title:"Unordered_List",css:"wym_tools_unordered_list"},{name:"Indent",title:"Indent",css:"wym_tools_indent"},{name:"Outdent",title:"Outdent",css:"wym_tools_outdent"},{name:"Undo",title:"Undo",css:"wym_tools_undo"},{name:"Redo",title:"Redo",css:"wym_tools_redo"},{name:"CreateLink",title:"Link",css:"wym_tools_link"},{name:"Unlink",title:"Unlink",css:"wym_tools_unlink"},{name:"InsertImage",title:"Image",css:"wym_tools_image"},{name:"InsertTable",title:"Table",css:"wym_tools_table"},{name:"Paste",title:"Paste_From_Word",css:"wym_tools_paste"},{name:"ToggleHtml",title:"HTML",css:"wym_tools_html"},{name:"Preview",title:"Preview",css:"wym_tools_preview"}],containersHtml:"<div class='wym_containers wym_section'><h2>{Containers}</h2><ul>"+WYMeditor.CONTAINERS_ITEMS+"</ul></div>",containersItemHtml:"<li class='"+WYMeditor.CONTAINER_CLASS+"'><a href='#' name='"+WYMeditor.CONTAINER_NAME+"'>"+WYMeditor.CONTAINER_TITLE+"</a></li>",containersItems:[{name:"P",title:"Paragraph",css:"wym_containers_p"},{name:"H1",title:"Heading_1",css:"wym_containers_h1"},{name:"H2",title:"Heading_2",css:"wym_containers_h2"},{name:"H3",title:"Heading_3",css:"wym_containers_h3"},{name:"H4",title:"Heading_4",css:"wym_containers_h4"},{name:"H5",title:"Heading_5",css:"wym_containers_h5"},{name:"H6",title:"Heading_6",css:"wym_containers_h6"},{name:"PRE",title:"Preformatted",css:"wym_containers_pre"},{name:"BLOCKQUOTE",title:"Blockquote",css:"wym_containers_blockquote"},{name:"TH",title:"Table_Header",css:"wym_containers_th"}],classesHtml:"<div class='wym_classes wym_section'><h2>{Classes}</h2><ul>"+WYMeditor.CLASSES_ITEMS+"</ul></div>",classesItemHtml:"<li><a href='#' name='"+WYMeditor.CLASS_NAME+"'>"+WYMeditor.CLASS_TITLE+"</a></li>",classesItems:[],statusHtml:"<div class='wym_status wym_section'><h2>{Status}</h2></div>",htmlHtml:"<div class='wym_html wym_section'><h2>{Source_Code}</h2><textarea class='wym_html_val'></textarea></div>",boxSelector:".wym_box",toolsSelector:".wym_tools",toolsListSelector:" ul",containersSelector:".wym_containers",classesSelector:".wym_classes",htmlSelector:".wym_html",iframeSelector:".wym_iframe iframe",iframeBodySelector:".wym_iframe",statusSelector:".wym_status",toolSelector:".wym_tools a",containerSelector:".wym_containers a",classSelector:".wym_classes a",htmlValSelector:".wym_html_val",hrefSelector:".wym_href",srcSelector:".wym_src",titleSelector:".wym_title",altSelector:".wym_alt",textSelector:".wym_text",rowsSelector:".wym_rows",colsSelector:".wym_cols",captionSelector:".wym_caption",summarySelector:".wym_summary",submitSelector:".wym_submit",cancelSelector:".wym_cancel",previewSelector:"",dialogTypeSelector:".wym_dialog_type",dialogLinkSelector:".wym_dialog_link",dialogImageSelector:".wym_dialog_image",dialogTableSelector:".wym_dialog_table",dialogPasteSelector:".wym_dialog_paste",dialogPreviewSelector:".wym_dialog_preview",updateSelector:".wymupdate",updateEvent:"click",dialogFeatures:"menubar=no,titlebar=no,toolbar=no,resizable=no,width=560,height=300,top=0,left=0",dialogFeaturesPreview:"menubar=no,titlebar=no,toolbar=no,resizable=no,scrollbars=yes,width=560,height=300,top=0,left=0",dialogHtml:"<!DOCTYPE html PUBLIC '-//W3C//DTD XHTML 1.0 Strict//EN' 'http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd'><html dir='"+WYMeditor.DIRECTION+"'><head><link rel='stylesheet' type='text/css' media='screen' href='"+WYMeditor.CSS_PATH+"' /><title>"+WYMeditor.DIALOG_TITLE+"</title><script type='text/javascript' src='"+WYMeditor.JQUERY_PATH+"'><\/script><script type='text/javascript' src='"+WYMeditor.WYM_PATH+"'><\/script></head>"+WYMeditor.DIALOG_BODY+"</html>",dialogLinkHtml:"<body class='wym_dialog wym_dialog_link' onload='WYMeditor.INIT_DIALOG("+WYMeditor.INDEX+")'><form><fieldset><input type='hidden' class='wym_dialog_type' value='"+WYMeditor.DIALOG_LINK+"' /><legend>{Link}</legend><div class='row'><label>{URL}</label><input type='text' class='wym_href' value='' size='40' /></div><div class='row'><label>{Title}</label><input type='text' class='wym_title' value='' size='40' /></div><div class='row row-indent'><input class='wym_submit' type='button' value='{Submit}' /><input class='wym_cancel' type='button'value='{Cancel}' /></div></fieldset></form></body>",dialogImageHtml:"<body class='wym_dialog wym_dialog_image' onload='WYMeditor.INIT_DIALOG("+WYMeditor.INDEX+")'><form><fieldset><input type='hidden' class='wym_dialog_type' value='"+WYMeditor.DIALOG_IMAGE+"' /><legend>{Image}</legend><div class='row'><label>{URL}</label><input type='text' class='wym_src' value='' size='40' /></div><div class='row'><label>{Alternative_Text}</label><input type='text' class='wym_alt' value='' size='40' /></div><div class='row'><label>{Title}</label><input type='text' class='wym_title' value='' size='40' /></div><div class='row row-indent'><input class='wym_submit' type='button' value='{Submit}' /><input class='wym_cancel' type='button'value='{Cancel}' /></div></fieldset></form></body>",dialogTableHtml:"<body class='wym_dialog wym_dialog_table' onload='WYMeditor.INIT_DIALOG("+WYMeditor.INDEX+")'><form><fieldset><input type='hidden' class='wym_dialog_type' value='"+WYMeditor.DIALOG_TABLE+"' /><legend>{Table}</legend><div class='row'><label>{Caption}</label><input type='text' class='wym_caption' value='' size='40' /></div><div class='row'><label>{Summary}</label><input type='text' class='wym_summary' value='' size='40' /></div><div class='row'><label>{Number_Of_Rows}</label><input type='text' class='wym_rows' value='3' size='3' /></div><div class='row'><label>{Number_Of_Cols}</label><input type='text' class='wym_cols' value='2' size='3' /></div><div class='row row-indent'><input class='wym_submit' type='button' value='{Submit}' /><input class='wym_cancel' type='button'value='{Cancel}' /></div></fieldset></form></body>",dialogPasteHtml:"<body class='wym_dialog wym_dialog_paste' onload='WYMeditor.INIT_DIALOG("+WYMeditor.INDEX+")'><form><input type='hidden' class='wym_dialog_type' value='"+WYMeditor.DIALOG_PASTE+"' /><fieldset><legend>{Paste_From_Word}</legend><div class='row'><textarea class='wym_text' rows='10' cols='50'></textarea></div><div class='row'><input class='wym_submit' type='button' value='{Submit}' /><input class='wym_cancel' type='button'value='{Cancel}' /></div></fieldset></form></body>",dialogPreviewHtml:"<body class='wym_dialog wym_dialog_preview' onload='WYMeditor.INIT_DIALOG("+WYMeditor.INDEX+")'></body>",dialogStyles:[],stringDelimiterLeft:"{",stringDelimiterRight:"}",preInit:null,preBind:null,postInit:null,preInitDialog:null,postInitDialog:null},e),this.each(function(){new WYMeditor.editor(jQuery(this),e)})},jQuery.extend({wymeditors:function(e){return WYMeditor.INSTANCES[e]}}),WYMeditor.editor.prototype.init=function(){if(jQuery.browser.msie)var WymClass=new WYMeditor.WymClassExplorer(this);else if(jQuery.browser.mozilla)var WymClass=new WYMeditor.WymClassMozilla(this);else if(jQuery.browser.opera)var WymClass=new WYMeditor.WymClassOpera(this);else if(jQuery.browser.safari||jQuery.browser.chrome)var WymClass=new WYMeditor.WymClassSafari(this);if(WymClass){jQuery.isFunction(this._options.preInit)&&this._options.preInit(this);var SaxListener=new WYMeditor.XhtmlSaxListener;jQuery.extend(SaxListener,WymClass),this.parser=new WYMeditor.XhtmlParser(SaxListener),(this._options.styles||this._options.stylesheet)&&this.configureEditorUsingRawCss(),this.helper=new WYMeditor.XmlHelper;for(var prop in WymClass)this[prop]=WymClass[prop];this._box=jQuery(this._element).hide().after(this._options.boxHtml).next().addClass("wym_box_"+this._index),jQuery.isFunction(jQuery.fn.data)&&(jQuery.data(this._box.get(0),WYMeditor.WYM_INDEX,this._index),jQuery.data(this._element.get(0),WYMeditor.WYM_INDEX,this._index));var h=WYMeditor.Helper,iframeHtml=this._options.iframeHtml;iframeHtml=h.replaceAll(iframeHtml,WYMeditor.INDEX,this._index),iframeHtml=h.replaceAll(iframeHtml,WYMeditor.IFRAME_BASE_PATH,this._options.iframeBasePath);var boxHtml=jQuery(this._box).html();boxHtml=h.replaceAll(boxHtml,WYMeditor.LOGO,this._options.logoHtml),boxHtml=h.replaceAll(boxHtml,WYMeditor.TOOLS,this._options.toolsHtml),boxHtml=h.replaceAll(boxHtml,WYMeditor.CONTAINERS,this._options.containersHtml),boxHtml=h.replaceAll(boxHtml,WYMeditor.CLASSES,this._options.classesHtml),boxHtml=h.replaceAll(boxHtml,WYMeditor.HTML,this._options.htmlHtml),boxHtml=h.replaceAll(boxHtml,WYMeditor.IFRAME,iframeHtml),boxHtml=h.replaceAll(boxHtml,WYMeditor.STATUS,this._options.statusHtml);for(var aTools=eval(this._options.toolsItems),sTools="",i=0;i<aTools.length;i++){var oTool=aTools[i];if(oTool.name&&oTool.title)var sTool=this._options.toolsItemHtml;var sTool=h.replaceAll(sTool,WYMeditor.TOOL_NAME,oTool.name);sTool=h.replaceAll(sTool,WYMeditor.TOOL_TITLE,this._options.stringDelimiterLeft+oTool.title+this._options.stringDelimiterRight),sTool=h.replaceAll(sTool,WYMeditor.TOOL_CLASS,oTool.css),sTools+=sTool}boxHtml=h.replaceAll(boxHtml,WYMeditor.TOOLS_ITEMS,sTools);for(var aClasses=eval(this._options.classesItems),sClasses="",i=0;i<aClasses.length;i++){var oClass=aClasses[i];if(oClass.name&&oClass.title)var sClass=this._options.classesItemHtml;sClass=h.replaceAll(sClass,WYMeditor.CLASS_NAME,oClass.name),sClass=h.replaceAll(sClass,WYMeditor.CLASS_TITLE,oClass.title),sClasses+=sClass}boxHtml=h.replaceAll(boxHtml,WYMeditor.CLASSES_ITEMS,sClasses);for(var aContainers=eval(this._options.containersItems),sContainers="",i=0;i<aContainers.length;i++){var oContainer=aContainers[i];if(oContainer.name&&oContainer.title)var sContainer=this._options.containersItemHtml;sContainer=h.replaceAll(sContainer,WYMeditor.CONTAINER_NAME,oContainer.name),sContainer=h.replaceAll(sContainer,WYMeditor.CONTAINER_TITLE,this._options.stringDelimiterLeft+oContainer.title+this._options.stringDelimiterRight),sContainer=h.replaceAll(sContainer,WYMeditor.CONTAINER_CLASS,oContainer.css),sContainers+=sContainer}boxHtml=h.replaceAll(boxHtml,WYMeditor.CONTAINERS_ITEMS,sContainers),boxHtml=this.replaceStrings(boxHtml),jQuery(this._box).html(boxHtml),jQuery(this._box).find(this._options.htmlSelector).hide(),this.loadSkin()}},WYMeditor.editor.prototype.bindEvents=function(){var wym=this;jQuery(this._box).find(this._options.toolSelector).click(function(){return wym._iframe.contentWindow.focus(),wym.exec(jQuery(this).attr(WYMeditor.NAME)),!1}),jQuery(this._box).find(this._options.containerSelector).click(function(){return wym.container(jQuery(this).attr(WYMeditor.NAME)),!1}),jQuery(this._box).find(this._options.htmlValSelector).keyup(function(){jQuery(wym._doc.body).html(jQuery(this).val())}).focus(function(){jQuery(this).toggleClass("hasfocus")}).blur(function(){jQuery(this).toggleClass("hasfocus")}),jQuery(this._box).find(this._options.classSelector).click(function(){var aClasses=eval(wym._options.classesItems),sName=jQuery(this).attr(WYMeditor.NAME),oClass=WYMeditor.Helper.findByName(aClasses,sName);if(oClass){var jqexpr=oClass.expr;wym.toggleClass(sName,jqexpr)}return wym._iframe.contentWindow.focus(),!1}),jQuery(this._options.updateSelector).bind(this._options.updateEvent,function(){wym.update()})},WYMeditor.editor.prototype.ready=function(){return null!=this._doc},WYMeditor.editor.prototype.box=function(){return this._box},WYMeditor.editor.prototype.html=function(e){if("string"!=typeof e)return jQuery(this._doc.body).html();jQuery(this._doc.body).html(e)},WYMeditor.editor.prototype.xhtml=function(){return this.parser.parse(this.html())},WYMeditor.editor.prototype.exec=function(e){switch(e){case WYMeditor.CREATE_LINK:(this.container()||this._selected_image)&&this.dialog(WYMeditor.DIALOG_LINK);break;case WYMeditor.INSERT_IMAGE:this.dialog(WYMeditor.DIALOG_IMAGE);break;case WYMeditor.INSERT_TABLE:this.dialog(WYMeditor.DIALOG_TABLE);break;case WYMeditor.PASTE:this.dialog(WYMeditor.DIALOG_PASTE);break;case WYMeditor.TOGGLE_HTML:this.update(),this.toggleHtml(),jQuery(this._box).find(this._options.htmlSelector).is(":visible")||this.listen();break;case WYMeditor.PREVIEW:this.dialog(WYMeditor.PREVIEW,this._options.dialogFeaturesPreview);break;default:this._exec(e)}},WYMeditor.editor.prototype.container=function(e){if(!e)return this.selected();var t=null;if(e.toLowerCase()==WYMeditor.TH){switch(t=this.container(),t.tagName.toLowerCase()){case WYMeditor.TD:case WYMeditor.TH:break;default:var n=new Array(WYMeditor.TD,WYMeditor.TH);t=this.findUp(this.container(),n)}null!=t&&(e=t.tagName.toLowerCase()==WYMeditor.TD?WYMeditor.TH:WYMeditor.TD,this.switchTo(t,e),this.update())}else{var n=new Array(WYMeditor.P,WYMeditor.H1,WYMeditor.H2,WYMeditor.H3,WYMeditor.H4,WYMeditor.H5,WYMeditor.H6,WYMeditor.PRE,WYMeditor.BLOCKQUOTE);if(t=this.findUp(this.container(),n)){var i=null;if(e.toLowerCase()==WYMeditor.BLOCKQUOTE){var r=this.findUp(this.container(),WYMeditor.BLOCKQUOTE);if(null==r)i=this._doc.createElement(e),t.parentNode.insertBefore(i,t),i.appendChild(t),this.setFocusToNode(i.firstChild);else{var a=r.childNodes,o=a.length,s=null;o>0&&(s=a.item(0));for(var l=0;l<o;l++)r.parentNode.insertBefore(a.item(0),r);r.parentNode.removeChild(r),s&&this.setFocusToNode(s)}}else this.switchTo(t,e);this.update()}}},WYMeditor.editor.prototype.toggleClass=function(e,t){var n=this._selected_image?this._selected_image:jQuery(this.selected());n=jQuery(n).parentsOrSelf(t),jQuery(n).toggleClass(e),jQuery(n).attr(WYMeditor.CLASS)||jQuery(n).removeAttr(this._class)},WYMeditor.editor.prototype.findUp=function(e,t){if(e){var n=e.tagName.toLowerCase();if(typeof t==WYMeditor.STRING)for(;n!=t&&n!=WYMeditor.BODY;)e=e.parentNode,n=e.tagName.toLowerCase();else for(var i=!1;!i&&n!=WYMeditor.BODY;){for(var r=0;r<t.length;r++)if(n==t[r]){i=!0;break}i||(e=e.parentNode,n=e.tagName.toLowerCase())}return n!=WYMeditor.BODY?e:null}return null},WYMeditor.editor.prototype.switchTo=function(e,t){var n=this._doc.createElement(t),i=jQuery(e).html();e.parentNode.replaceChild(n,e),jQuery(n).html(i),this.setFocusToNode(n)},WYMeditor.editor.prototype.replaceStrings=function(sVal){if(!WYMeditor.STRINGS[this._options.lang])try{eval(jQuery.ajax({url:this._options.langPath+this._options.lang+".js",async:!1}).responseText)}catch(e){return WYMeditor.console.error("WYMeditor: error while parsing language file."),sVal}for(var key in WYMeditor.STRINGS[this._options.lang])sVal=WYMeditor.Helper.replaceAll(sVal,this._options.stringDelimiterLeft+key+this._options.stringDelimiterRight,WYMeditor.STRINGS[this._options.lang][key]);return sVal},WYMeditor.editor.prototype.encloseString=function(e){return this._options.stringDelimiterLeft+e+this._options.stringDelimiterRight},WYMeditor.editor.prototype.status=function(e){jQuery(this._box).find(this._options.statusSelector).html(e)},WYMeditor.editor.prototype.update=function(){var e=this.xhtml();jQuery(this._element).val(e),jQuery(this._box).find(this._options.htmlValSelector).not(".hasfocus").val(e)},WYMeditor.editor.prototype.dialog=function(e,t,n){var i=t||this._wym._options.dialogFeatures,r=window.open("","dialog",i);if(r){var a="";switch(e){case WYMeditor.DIALOG_LINK:a=this._options.dialogLinkHtml;break;case WYMeditor.DIALOG_IMAGE:a=this._options.dialogImageHtml;break;case WYMeditor.DIALOG_TABLE:a=this._options.dialogTableHtml;break;case WYMeditor.DIALOG_PASTE:a=this._options.dialogPasteHtml;break;case WYMeditor.PREVIEW:a=this._options.dialogPreviewHtml;break;default:a=n}var o=WYMeditor.Helper,s=this._options.dialogHtml;s=o.replaceAll(s,WYMeditor.BASE_PATH,this._options.basePath),s=o.replaceAll(s,WYMeditor.DIRECTION,this._options.direction),s=o.replaceAll(s,WYMeditor.CSS_PATH,this._options.skinPath+WYMeditor.SKINS_DEFAULT_CSS),s=o.replaceAll(s,WYMeditor.WYM_PATH,this._options.wymPath),s=o.replaceAll(s,WYMeditor.JQUERY_PATH,this._options.jQueryPath),s=o.replaceAll(s,WYMeditor.DIALOG_TITLE,this.encloseString(e)),s=o.replaceAll(s,WYMeditor.DIALOG_BODY,a),s=o.replaceAll(s,WYMeditor.INDEX,this._index),s=this.replaceStrings(s);var l=r.document;l.write(s),l.close()}},WYMeditor.editor.prototype.toggleHtml=function(){jQuery(this._box).find(this._options.htmlSelector).toggle()},WYMeditor.editor.prototype.uniqueStamp=function(){return"wym-"+(new Date).getTime()},WYMeditor.editor.prototype.paste=function(e){var t,n=this.selected(),i=e.split(this._newLine+this._newLine),r=new RegExp(this._newLine,"g");if(n&&n.tagName.toLowerCase()!=WYMeditor.BODY)for(x=i.length-1;x>=0;x--)t=i[x],t=t.replace(r,"<br />"),jQuery(n).after("<p>"+t+"</p>");else for(x=0;x<i.length;x++)t=i[x],t=t.replace(r,"<br />"),jQuery(this._doc.body).append("<p>"+t+"</p>")},WYMeditor.editor.prototype.insert=function(e){null!=this._iframe.contentWindow.getSelection().focusNode?this._exec(WYMeditor.INSERT_HTML,e):this.paste(e)},WYMeditor.editor.prototype.wrap=function(e,t){null!=this._iframe.contentWindow.getSelection().focusNode&&this._exec(WYMeditor.INSERT_HTML,e+this._iframe.contentWindow.getSelection().toString()+t)},WYMeditor.editor.prototype.unwrap=function(){null!=this._iframe.contentWindow.getSelection().focusNode&&this._exec(WYMeditor.INSERT_HTML,this._iframe.contentWindow.getSelection().toString())},WYMeditor.editor.prototype.addCssRules=function(e,t){var n=e.styleSheets[0];if(n)for(var i=0;i<t.length;i++){var r=t[i];r.name&&r.css&&this.addCssRule(n,r)}},WYMeditor.editor.prototype.computeBasePath=function(){return jQuery(jQuery.grep(jQuery("script"),function(e){return e.src&&e.src.match(/jquery\.wymeditor(\.pack|\.min|\.packed)?\.js(\?.*)?$/)})).attr("src").replace(/jquery\.wymeditor(\.pack|\.min|\.packed)?\.js(\?.*)?$/,"")},WYMeditor.editor.prototype.computeWymPath=function(){return jQuery(jQuery.grep(jQuery("script"),function(e){return e.src&&e.src.match(/jquery\.wymeditor(\.pack|\.min|\.packed)?\.js(\?.*)?$/)})).attr("src")},WYMeditor.editor.prototype.computeJqueryPath=function(){return jQuery(jQuery.grep(jQuery("script"),function(e){return e.src&&e.src.match(/jquery(-(.*)){0,1}(\.pack|\.min|\.packed)?\.js(\?.*)?$/)})).attr("src")},WYMeditor.editor.prototype.computeCssPath=function(){return jQuery(jQuery.grep(jQuery("link"),function(e){return e.href&&e.href.match(/wymeditor\/skins\/(.*)screen\.css(\?.*)?$/)})).attr("href")},WYMeditor.editor.prototype.configureEditorUsingRawCss=function(){var e=new WYMeditor.WymCssParser;this._options.stylesheet?e.parse(jQuery.ajax({url:this._options.stylesheet,async:!1}).responseText):e.parse(this._options.styles,!1),0==this._options.classesItems.length&&(this._options.classesItems=e.css_settings.classesItems),0==this._options.editorStyles.length&&(this._options.editorStyles=e.css_settings.editorStyles),0==this._options.dialogStyles.length&&(this._options.dialogStyles=e.css_settings.dialogStyles)},WYMeditor.editor.prototype.listen=function(){jQuery(this._doc.body).bind("mousedown",this.mousedown);for(var e=this._doc.body.getElementsByTagName("img"),t=0;t<e.length;t++)jQuery(e[t]).bind("mousedown",this.mousedown)},WYMeditor.editor.prototype.mousedown=function(e){WYMeditor.INSTANCES[this.ownerDocument.title]._selected_image=this.tagName.toLowerCase()==WYMeditor.IMG?this:null,e.stopPropagation()},WYMeditor.loadCss=function(e){var t=document.createElement("link");t.rel="stylesheet",t.href=e,jQuery("head").get(0).appendChild(t)},WYMeditor.editor.prototype.loadSkin=function(){if(this._options.loadSkin&&!WYMeditor.SKINS[this._options.skin]){var found=!1,rExp=new RegExp(this._options.skin+"/"+WYMeditor.SKINS_DEFAULT_CSS+"$");jQuery("link").each(function(){this.href.match(rExp)&&(found=!0)}),found||WYMeditor.loadCss(this._options.skinPath+WYMeditor.SKINS_DEFAULT_CSS)}jQuery(this._box).addClass("wym_skin_"+this._options.skin),this._options.initSkin&&!WYMeditor.SKINS[this._options.skin]&&eval(jQuery.ajax({url:this._options.skinPath+WYMeditor.SKINS_DEFAULT_JS,async:!1}).responseText),WYMeditor.SKINS[this._options.skin]&&WYMeditor.SKINS[this._options.skin].init&&WYMeditor.SKINS[this._options.skin].init(this)},WYMeditor.INIT_DIALOG=function(index){var wym=window.opener.WYMeditor.INSTANCES[index],doc=window.document,selected=wym.selected(),dialogType=jQuery(wym._options.dialogTypeSelector).val(),sStamp=wym.uniqueStamp();switch(dialogType){case WYMeditor.DIALOG_LINK:selected&&selected.tagName&&selected.tagName.toLowerCase!=WYMeditor.A&&(selected=jQuery(selected).parentsOrSelf(WYMeditor.A)),!selected&&wym._selected_image&&(selected=jQuery(wym._selected_image).parentsOrSelf(WYMeditor.A))}jQuery.isFunction(wym._options.preInitDialog)&&wym._options.preInitDialog(wym,window);var styles=doc.styleSheets[0],aCss=eval(wym._options.dialogStyles);wym.addCssRules(doc,aCss),selected&&(jQuery(wym._options.hrefSelector).val(jQuery(selected).attr(WYMeditor.HREF)),jQuery(wym._options.srcSelector).val(jQuery(selected).attr(WYMeditor.SRC)),jQuery(wym._options.titleSelector).val(jQuery(selected).attr(WYMeditor.TITLE)),jQuery(wym._options.altSelector).val(jQuery(selected).attr(WYMeditor.ALT))),wym._selected_image&&(jQuery(wym._options.dialogImageSelector+" "+wym._options.srcSelector).val(jQuery(wym._selected_image).attr(WYMeditor.SRC)),jQuery(wym._options.dialogImageSelector+" "+wym._options.titleSelector).val(jQuery(wym._selected_image).attr(WYMeditor.TITLE)),jQuery(wym._options.dialogImageSelector+" "+wym._options.altSelector).val(jQuery(wym._selected_image).attr(WYMeditor.ALT))),jQuery(wym._options.dialogLinkSelector+" "+wym._options.submitSelector).click(function(){var e=jQuery(wym._options.hrefSelector).val();e.length>0&&(wym._exec(WYMeditor.CREATE_LINK,sStamp),jQuery("a[href="+sStamp+"]",wym._doc.body).attr(WYMeditor.HREF,e).attr(WYMeditor.TITLE,jQuery(wym._options.titleSelector).val())),window.close()}),jQuery(wym._options.dialogImageSelector+" "+wym._options.submitSelector).click(function(){var e=jQuery(wym._options.srcSelector).val();e.length>0&&(wym._exec(WYMeditor.INSERT_IMAGE,sStamp),jQuery("img[src$="+sStamp+"]",wym._doc.body).attr(WYMeditor.SRC,e).attr(WYMeditor.TITLE,jQuery(wym._options.titleSelector).val()).attr(WYMeditor.ALT,jQuery(wym._options.altSelector).val())),window.close()}),jQuery(wym._options.dialogTableSelector+" "+wym._options.submitSelector).click(function(){var e=jQuery(wym._options.rowsSelector).val(),t=jQuery(wym._options.colsSelector).val();if(e>0&&t>0){var n=wym._doc.createElement(WYMeditor.TABLE),i=null,r=jQuery(wym._options.captionSelector).val(),a=n.createCaption();for(a.innerHTML=r,x=0;x<e;x++)for(i=n.insertRow(x),y=0;y<t;y++)i.insertCell(y);jQuery(n).attr("summary",jQuery(wym._options.summarySelector).val());var o=jQuery(wym.findUp(wym.container(),WYMeditor.MAIN_CONTAINERS)).get(0);o&&o.parentNode?jQuery(o).after(n):jQuery(wym._doc.body).append(n)}window.close()}),jQuery(wym._options.dialogPasteSelector+" "+wym._options.submitSelector).click(function(){var e=jQuery(wym._options.textSelector).val();wym.paste(e),window.close()}),jQuery(wym._options.dialogPreviewSelector+" "+wym._options.previewSelector).html(wym.xhtml()),jQuery(wym._options.cancelSelector).mousedown(function(){window.close()}),jQuery.isFunction(wym._options.postInitDialog)&&wym._options.postInitDialog(wym,window)},WYMeditor.XmlHelper=function(){return this._entitiesDiv=document.createElement("div"),this},WYMeditor.XmlHelper.prototype.tag=function(e,t,n){return t=t||!1,n=n||!1,"<"+e+(t?this.tagOptions(t):"")+(n?">":" />")},WYMeditor.XmlHelper.prototype.contentTag=function(e,t,n){return n=n||!1,"<"+e+(n?this.tagOptions(n):"")+">"+t+"</"+e+">"},WYMeditor.XmlHelper.prototype.cdataSection=function(e){return"<![CDATA["+e+"]]>"},WYMeditor.XmlHelper.prototype.escapeOnce=function(e){return this._fixDoubleEscape(this.escapeEntities(e))},WYMeditor.XmlHelper.prototype._fixDoubleEscape=function(e){return e.replace(/&amp;([a-z]+|(#\d+));/gi,"&$1;")},WYMeditor.XmlHelper.prototype.tagOptions=function(e){var t=this;t._formated_options="";for(var n in e){var i=e[n];"function"!=typeof i&&i.length>0&&(parseInt(n)==n&&"object"==typeof i&&(n=i.shift(),i=i.pop()),""!=n&&""!=i&&(t._formated_options+=" "+n+'="'+t.escapeOnce(i)+'"'))}return t._formated_options},WYMeditor.XmlHelper.prototype.escapeEntities=function(e,t){this._entitiesDiv.innerHTML=e,this._entitiesDiv.textContent=e;var n=this._entitiesDiv.innerHTML;return void 0===t&&(0!=t&&(n=n.replace('"',"&quot;")),1==t&&(n=n.replace('"',"&#039;"))),n},WYMeditor.XmlHelper.prototype.parseAttributes=function(e){var t=[],n=e.split(/((=\s*")(")("))|((=\s*\')(\')(\'))|((=\s*[^>\s]*))/g);if(n.toString()!=e)for(var i in n){var r=n[i];if("function"!=typeof r&&0!=r.length){var a=new RegExp("(\\w+)\\s*"+r);if(match=e.match(a)){var o=r.replace(/^[\s=]+/,""),s=o.charAt(0);s='"'==s?'"':"'"==s?"'":"",""!=s&&(o='"'==s?o.replace(/^"|"+$/g,""):o.replace(/^'|'+$/g,"")),e=e.replace(match[0],""),t.push([match[1],o])}}}return t},WYMeditor.XhtmlValidator={_attributes:{core:{except:["base","head","html","meta","param","script","style","title"],attributes:["class","id","style","title","accesskey","tabindex"]},language:{except:["base","br","hr","iframe","param","script"],attributes:{dir:["ltr","rtl"],0:"lang",1:"xml:lang"}},keyboard:{attributes:{accesskey:/^(\w){1}$/,tabindex:/^(\d)+$/}}},_events:{window:{only:["body"],attributes:["onload","onunload"]},form:{only:["form","input","textarea","select","a","label","button"],attributes:["onchange","onsubmit","onreset","onselect","onblur","onfocus"]},keyboard:{except:["base","bdo","br","frame","frameset","head","html","iframe","meta","param","script","style","title"],attributes:["onkeydown","onkeypress","onkeyup"]},mouse:{except:["base","bdo","br","head","html","meta","param","script","style","title"],attributes:["onclick","ondblclick","onmousedown","onmousemove","onmouseover","onmouseout","onmouseup"]}},_tags:{a:{attributes:{0:"charset",1:"coords",2:"href",3:"hreflang",4:"name",rel:/^(alternate|designates|stylesheet|start|next|prev|contents|index|glossary|copyright|chapter|section|subsection|appendix|help|bookmark| |shortcut|icon)+$/,rev:/^(alternate|designates|stylesheet|start|next|prev|contents|index|glossary|copyright|chapter|section|subsection|appendix|help|bookmark| 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)+$/i,rel:/^(alternate|appendix|bookmark|chapter|contents|copyright|glossary|help|home|index|next|prev|section|start|stylesheet|subsection| |shortcut|icon)+$/i,rev:/^(alternate|appendix|bookmark|chapter|contents|copyright|glossary|help|home|index|next|prev|section|start|stylesheet|subsection| |shortcut|icon)+$/i,3:"type"},inside:"head"},map:{attributes:["id","name"],required:["id"]},meta:{attributes:{0:"content","http-equiv":/^(content\-type|expires|refresh|set\-cookie)$/i,1:"name",2:"scheme"},required:["content"]},27:"noscript",object:{attributes:["archive","classid","codebase","codetype","data","declare","height","name","standby","type","usemap","width"]},28:"ol",optgroup:{attributes:{0:"label",disabled:/^(disabled)$/},required:["label"]},option:{attributes:{0:"label",disabled:/^(disabled)$/,selected:/^(selected)$/,1:"value"},inside:"select"},29:"p",param:{attributes:{0:"type",valuetype:/^(data|ref|object)$/,1:"valuetype",2:"value"},required:["name"]},30:"pre",q:{attributes:["cite"]},31:"samp",script:{attributes:{type:/^(text\/ecmascript|text\/javascript|text\/jscript|text\/vbscript|text\/vbs|text\/xml)$/,0:"charset",defer:/^(defer)$/,1:"src"},required:["type"]},select:{attributes:{disabled:/^(disabled)$/,multiple:/^(multiple)$/,0:"name",1:"size"},inside:"form"},32:"small",33:"span",34:"strong",style:{attributes:{0:"type",media:/^(screen|tty|tv|projection|handheld|print|braille|aural|all)$/},required:["type"]},35:"sub",36:"sup",table:{attributes:{0:"border",1:"cellpadding",2:"cellspacing",frame:/^(void|above|below|hsides|lhs|rhs|vsides|box|border)$/,rules:/^(none|groups|rows|cols|all)$/,3:"summary",4:"width"}},tbody:{attributes:{align:/^(right|left|center|justify)$/,0:"char",1:"charoff",valign:/^(top|middle|bottom|baseline)$/}},td:{attributes:{0:"abbr",align:/^(left|right|center|justify|char)$/,1:"axis",2:"char",3:"charoff",colspan:/^(\d)+$/,4:"headers",rowspan:/^(\d)+$/,scope:/^(col|colgroup|row|rowgroup)$/,valign:/^(top|middle|bottom|baseline)$/}},textarea:{attributes:["cols","rows","disabled","name","readonly"],required:["cols","rows"],inside:"form"},tfoot:{attributes:{align:/^(right|left|center|justify)$/,0:"char",1:"charoff",valign:/^(top|middle|bottom)$/,2:"baseline"}},th:{attributes:{0:"abbr",align:/^(left|right|center|justify|char)$/,1:"axis",2:"char",3:"charoff",colspan:/^(\d)+$/,4:"headers",rowspan:/^(\d)+$/,scope:/^(col|colgroup|row|rowgroup)$/,valign:/^(top|middle|bottom|baseline)$/}},thead:{attributes:{align:/^(right|left|center|justify)$/,0:"char",1:"charoff",valign:/^(top|middle|bottom|baseline)$/}},37:"title",tr:{attributes:{align:/^(right|left|center|justify|char)$/,0:"char",1:"charoff",valign:/^(top|middle|bottom|baseline)$/}},38:"tt",39:"ul",40:"var"},skiped_attributes:[],skiped_attribute_values:[],getValidTagAttributes:function(e,t){var n={},i=this.getPossibleTagAttributes(e);for(var r in t){var a=t[r],o=WYMeditor.Helper;o.contains(this.skiped_attributes,r)||o.contains(this.skiped_attribute_values,a)||"function"!=typeof a&&o.contains(i,r)&&(this.doesAttributeNeedsValidation(e,r)?this.validateAttribute(e,r,a)&&(n[r]=a):n[r]=a)}return n},getUniqueAttributesAndEventsForTag:function(e){var t=[];if(this._tags[e]&&this._tags[e].attributes)for(k in this._tags[e].attributes)t.push(parseInt(k)==k?this._tags[e].attributes[k]:k);return t},getDefaultAttributesAndEventsForTags:function(){var e=[];for(var t in this._events)e.push(this._events[t]);for(var t in this._attributes)e.push(this._attributes[t]);return e},isValidTag:function(e){if(this._tags[e])return!0;for(var t in this._tags)if(this._tags[t]==e)return!0;return!1},getDefaultAttributesAndEventsForTag:function(e){var t=[];if(this.isValidTag(e)){var n=this.getDefaultAttributesAndEventsForTags();for(var i in n){var r=n[i];if("object"==typeof r){var a=WYMeditor.Helper;if(r.except&&a.contains(r.except,e)||r.only&&!a.contains(r.only,e))continue;var o=r.attributes?r.attributes:r.events;for(var s in o)t.push("string"!=typeof o[s]?s:o[s])}}}return t},doesAttributeNeedsValidation:function(e,t){return this._tags[e]&&(this._tags[e].attributes&&this._tags[e].attributes[t]||this._tags[e].required&&WYMeditor.Helper.contains(this._tags[e].required,t))},validateAttribute:function(e,t,n){return!(this._tags[e]&&this._tags[e].attributes&&this._tags[e].attributes[t]&&n.length>0&&!n.match(this._tags[e].attributes[t])||this._tags[e]&&this._tags[e].required&&WYMeditor.Helper.contains(this._tags[e].required,t)&&0==n.length)&&void 0!==this._tags[e]},getPossibleTagAttributes:function(e){return this._possible_tag_attributes||(this._possible_tag_attributes={}),this._possible_tag_attributes[e]||(this._possible_tag_attributes[e]=this.getUniqueAttributesAndEventsForTag(e).concat(this.getDefaultAttributesAndEventsForTag(e))),this._possible_tag_attributes[e]}},WYMeditor.ParallelRegex=function(e){return this._case=e,this._patterns=[],this._labels=[],this._regex=null,this},WYMeditor.ParallelRegex.prototype.addPattern=function(e,t){t=t||!0;var n=this._patterns.length;this._patterns[n]=e,this._labels[n]=t,this._regex=null},WYMeditor.ParallelRegex.prototype.match=function(e){if(0==this._patterns.length)return[!1,""];var t=e.match(this._getCompoundedRegex());if(!t)return[!1,""];for(var n=t[0],i=1;i<t.length;i++)if(t[i])return[this._labels[i-1],n];return[!0,t[0]]},WYMeditor.ParallelRegex.prototype._getCompoundedRegex=function(){if(null==this._regex){for(var e=0,t=this._patterns.length;e<t;e++)this._patterns[e]="("+this._untokenizeRegex(this._tokenizeRegex(this._patterns[e]).replace(/([\/\(\)])/g,"\\$1"))+")";this._regex=new RegExp(this._patterns.join("|"),this._getPerlMatchingFlags())}return this._regex},WYMeditor.ParallelRegex.prototype._tokenizeRegex=function(e){return e.replace(/\(\?(i|m|s|x|U)\)/,"~~~~~~Tk1$1~~~~~~").replace(/\(\?(\-[i|m|s|x|U])\)/,"~~~~~~Tk2$1~~~~~~").replace(/\(\?\=(.*)\)/,"~~~~~~Tk3$1~~~~~~").replace(/\(\?\!(.*)\)/,"~~~~~~Tk4$1~~~~~~").replace(/\(\?\<\=(.*)\)/,"~~~~~~Tk5$1~~~~~~").replace(/\(\?\<\!(.*)\)/,"~~~~~~Tk6$1~~~~~~").replace(/\(\?\:(.*)\)/,"~~~~~~Tk7$1~~~~~~")},WYMeditor.ParallelRegex.prototype._untokenizeRegex=function(e){return e.replace(/~~~~~~Tk1(.{1})~~~~~~/,"(?$1)").replace(/~~~~~~Tk2(.{2})~~~~~~/,"(?$1)").replace(/~~~~~~Tk3(.*)~~~~~~/,"(?=$1)").replace(/~~~~~~Tk4(.*)~~~~~~/,"(?!$1)").replace(/~~~~~~Tk5(.*)~~~~~~/,"(?<=$1)").replace(/~~~~~~Tk6(.*)~~~~~~/,"(?<!$1)").replace(/~~~~~~Tk7(.*)~~~~~~/,"(?:$1)")},WYMeditor.ParallelRegex.prototype._getPerlMatchingFlags=function(){return this._case?"m":"mi"},WYMeditor.StateStack=function(e){return this._stack=[e],this},WYMeditor.StateStack.prototype.getCurrent=function(){return this._stack[this._stack.length-1]},WYMeditor.StateStack.prototype.enter=function(e){this._stack.push(e)},WYMeditor.StateStack.prototype.leave=function(){return 1!=this._stack.length&&(this._stack.pop(),!0)},WYMeditor.LEXER_ENTER=1,WYMeditor.LEXER_MATCHED=2,WYMeditor.LEXER_UNMATCHED=3,WYMeditor.LEXER_EXIT=4,WYMeditor.LEXER_SPECIAL=5,WYMeditor.Lexer=function(e,t,n){return t=t||"accept",this._case=n||!1,this._regexes={},this._parser=e,this._mode=new WYMeditor.StateStack(t),this._mode_handlers={},this._mode_handlers[t]=t,this},WYMeditor.Lexer.prototype.addPattern=function(e,t){var t=t||"accept";void 0===this._regexes[t]&&(this._regexes[t]=new WYMeditor.ParallelRegex(this._case)),this._regexes[t].addPattern(e),void 0===this._mode_handlers[t]&&(this._mode_handlers[t]=t)},WYMeditor.Lexer.prototype.addEntryPattern=function(e,t,n){void 0===this._regexes[t]&&(this._regexes[t]=new WYMeditor.ParallelRegex(this._case)),this._regexes[t].addPattern(e,n),void 0===this._mode_handlers[n]&&(this._mode_handlers[n]=n)},WYMeditor.Lexer.prototype.addExitPattern=function(e,t){void 0===this._regexes[t]&&(this._regexes[t]=new WYMeditor.ParallelRegex(this._case)),this._regexes[t].addPattern(e,"__exit"),void 0===this._mode_handlers[t]&&(this._mode_handlers[t]=t)},WYMeditor.Lexer.prototype.addSpecialPattern=function(e,t,n){void 0===this._regexes[t]&&(this._regexes[t]=new WYMeditor.ParallelRegex(this._case)),this._regexes[t].addPattern(e,"_"+n),void 0===this._mode_handlers[n]&&(this._mode_handlers[n]=n)},WYMeditor.Lexer.prototype.mapHandler=function(e,t){this._mode_handlers[e]=t},WYMeditor.Lexer.prototype.parse=function(e){if(void 0===this._parser)return!1;for(var t,n=e.length;"object"==typeof(t=this._reduce(e));){var e=t[0],i=t[1],r=t[2],a=t[3];if(!this._dispatchTokens(i,r,a))return!1;if(""==e)return!0;if(e.length==n)return!1;n=e.length}return!!t&&this._invokeParser(e,WYMeditor.LEXER_UNMATCHED)},WYMeditor.Lexer.prototype._dispatchTokens=function(e,t,n){return n=n||!1,!!this._invokeParser(e,WYMeditor.LEXER_UNMATCHED)&&("boolean"==typeof n?this._invokeParser(t,WYMeditor.LEXER_MATCHED):this._isModeEnd(n)?!!this._invokeParser(t,WYMeditor.LEXER_EXIT)&&this._mode.leave():this._isSpecialMode(n)?(this._mode.enter(this._decodeSpecial(n)),!!this._invokeParser(t,WYMeditor.LEXER_SPECIAL)&&this._mode.leave()):(this._mode.enter(n),this._invokeParser(t,WYMeditor.LEXER_ENTER)))},WYMeditor.Lexer.prototype._isModeEnd=function(e){return"__exit"===e},WYMeditor.Lexer.prototype._isSpecialMode=function(e){return"_"==e.substring(0,1)},WYMeditor.Lexer.prototype._decodeSpecial=function(e){return e.substring(1)},WYMeditor.Lexer.prototype._invokeParser=function(content,is_match){if(!/ +/.test(content)&&(""===content||0==content))return!0;var current=this._mode.getCurrent(),handler=this._mode_handlers[current],result;return eval("result = this._parser."+handler+"(content, is_match);"),result},WYMeditor.Lexer.prototype._reduce=function(e){var t=this._regexes[this._mode.getCurrent()].match(e),n=t[1],i=t[0];if(i){var r=e.indexOf(n),a=e.substr(0,r);return e=e.substring(r+n.length),[e,a,n,i]}return!0},WYMeditor.XhtmlLexer=function(e){return jQuery.extend(this,new WYMeditor.Lexer(e,"Text")),this.mapHandler("Text","Text"),this.addTokens(),this.init(),this},WYMeditor.XhtmlLexer.prototype.init=function(){},WYMeditor.XhtmlLexer.prototype.addTokens=function(){this.addCommentTokens("Text"),this.addScriptTokens("Text"),this.addCssTokens("Text"),this.addTagTokens("Text")},WYMeditor.XhtmlLexer.prototype.addCommentTokens=function(e){this.addEntryPattern("\x3c!--",e,"Comment"),this.addExitPattern("--\x3e","Comment")},WYMeditor.XhtmlLexer.prototype.addScriptTokens=function(e){this.addEntryPattern("<script",e,"Script"),this.addExitPattern("<\/script>","Script")},WYMeditor.XhtmlLexer.prototype.addCssTokens=function(e){this.addEntryPattern("<style",e,"Css"),this.addExitPattern("</style>","Css")},WYMeditor.XhtmlLexer.prototype.addTagTokens=function(e){this.addSpecialPattern("<\\s*[a-z0-9:-]+\\s*>",e,"OpeningTag"),this.addEntryPattern("<[a-z0-9:-]+[\\/ \\>]+",e,"OpeningTag"),this.addInTagDeclarationTokens("OpeningTag"),this.addSpecialPattern("</\\s*[a-z0-9:-]+\\s*>",e,"ClosingTag")},WYMeditor.XhtmlLexer.prototype.addInTagDeclarationTokens=function(e){this.addSpecialPattern("\\s+",e,"Ignore"),this.addAttributeTokens(e),this.addExitPattern("/>",e),this.addExitPattern(">",e)},WYMeditor.XhtmlLexer.prototype.addAttributeTokens=function(e){this.addSpecialPattern("\\s*[a-z-_0-9]*:?[a-z-_0-9]+\\s*(?==)\\s*",e,"TagAttributes"),this.addEntryPattern('=\\s*"',e,"DoubleQuotedAttribute"),this.addPattern('\\\\"',"DoubleQuotedAttribute"),this.addExitPattern('"',"DoubleQuotedAttribute"),this.addEntryPattern("=\\s*'",e,"SingleQuotedAttribute"),this.addPattern("\\\\'","SingleQuotedAttribute"),this.addExitPattern("'","SingleQuotedAttribute"),this.addSpecialPattern("=\\s*[^>\\s]*",e,"UnquotedAttribute")},WYMeditor.XhtmlParser=function(e,t){var t=t||"Text";return this._Lexer=new WYMeditor.XhtmlLexer(this),this._Listener=e,this._mode=t,this._matches=[],this._last_match="",this._current_match="",this},WYMeditor.XhtmlParser.prototype.parse=function(e){return this._Lexer.parse(this.beforeParsing(e)),this.afterParsing(this._Listener.getResult())},WYMeditor.XhtmlParser.prototype.beforeParsing=function(e){return(e.match(/class="MsoNormal"/)||e.match(/ns = "urn:schemas-microsoft-com/))&&this._Listener.avoidStylingTagsAndAttributes(),this._Listener.beforeParsing(e)},WYMeditor.XhtmlParser.prototype.afterParsing=function(e){return this._Listener._avoiding_tags_implicitly&&this._Listener.allowStylingTagsAndAttributes(),this._Listener.afterParsing(e)},WYMeditor.XhtmlParser.prototype.Ignore=function(e,t){return!0},WYMeditor.XhtmlParser.prototype.Text=function(e){return this._Listener.addContent(e),!0},WYMeditor.XhtmlParser.prototype.Comment=function(e,t){return this._addNonTagBlock(e,t,"addComment")},WYMeditor.XhtmlParser.prototype.Script=function(e,t){return this._addNonTagBlock(e,t,"addScript")},WYMeditor.XhtmlParser.prototype.Css=function(e,t){return this._addNonTagBlock(e,t,"addCss")},WYMeditor.XhtmlParser.prototype._addNonTagBlock=function(e,t,n){switch(t){case WYMeditor.LEXER_ENTER:this._non_tag=e;break;case WYMeditor.LEXER_UNMATCHED:this._non_tag+=e;break;case WYMeditor.LEXER_EXIT:switch(n){case"addComment":this._Listener.addComment(this._non_tag+e);break;case"addScript":this._Listener.addScript(this._non_tag+e);break;case"addCss":this._Listener.addCss(this._non_tag+e)}}return!0},WYMeditor.XhtmlParser.prototype.OpeningTag=function(e,t){switch(t){case WYMeditor.LEXER_ENTER:this._tag=this.normalizeTag(e),this._tag_attributes={};break;case WYMeditor.LEXER_SPECIAL:this._callOpenTagListener(this.normalizeTag(e));break;case WYMeditor.LEXER_EXIT:this._callOpenTagListener(this._tag,this._tag_attributes)}return!0},WYMeditor.XhtmlParser.prototype.ClosingTag=function(e,t){return this._callCloseTagListener(this.normalizeTag(e)),!0},WYMeditor.XhtmlParser.prototype._callOpenTagListener=function(e,t){var t=t||{};this.autoCloseUnclosedBeforeNewOpening(e),this._Listener.isBlockTag(e)?(this._Listener._tag_stack.push(e),this._Listener.fixNestingBeforeOpeningBlockTag(e,t),this._Listener.openBlockTag(e,t),this._increaseOpenTagCounter(e)):this._Listener.isInlineTag(e)?this._Listener.inlineTag(e,t):(this._Listener.openUnknownTag(e,t),this._increaseOpenTagCounter(e)),this._Listener.last_tag=e,this._Listener.last_tag_opened=!0,this._Listener.last_tag_attributes=t},WYMeditor.XhtmlParser.prototype._callCloseTagListener=function(e){if(this._decreaseOpenTagCounter(e))if(this.autoCloseUnclosedBeforeTagClosing(e),this._Listener.isBlockTag(e)){var t=this._Listener._tag_stack.pop();if(0==t)return;t!=e&&(e=t),this._Listener.closeBlockTag(e)}else this._Listener.closeUnknownTag(e);else this._Listener.closeUnopenedTag(e);this._Listener.last_tag=e,this._Listener.last_tag_opened=!1},WYMeditor.XhtmlParser.prototype._increaseOpenTagCounter=function(e){this._Listener._open_tags[e]=this._Listener._open_tags[e]||0,this._Listener._open_tags[e]++},WYMeditor.XhtmlParser.prototype._decreaseOpenTagCounter=function(e){return!!this._Listener._open_tags[e]&&(this._Listener._open_tags[e]--,0==this._Listener._open_tags[e]&&(this._Listener._open_tags[e]=void 0),!0)},WYMeditor.XhtmlParser.prototype.autoCloseUnclosedBeforeNewOpening=function(e){this._autoCloseUnclosed(e,!1)},WYMeditor.XhtmlParser.prototype.autoCloseUnclosedBeforeTagClosing=function(e){this._autoCloseUnclosed(e,!0)},WYMeditor.XhtmlParser.prototype._autoCloseUnclosed=function(e,t){var t=t||!1;if(this._Listener._open_tags)for(var n in this._Listener._open_tags){var i=this._Listener._open_tags[n];i>0&&this._Listener.shouldCloseTagAutomatically(n,e,t)&&this._callCloseTagListener(n,!0)}},WYMeditor.XhtmlParser.prototype.getTagReplacements=function(){return this._Listener.getTagReplacements()},WYMeditor.XhtmlParser.prototype.normalizeTag=function(e){e=e.replace(/^([\s<\/>]*)|([\s<\/>]*)$/gm,"").toLowerCase();var t=this._Listener.getTagReplacements();return t[e]?t[e]:e},WYMeditor.XhtmlParser.prototype.TagAttributes=function(e,t){return WYMeditor.LEXER_SPECIAL==t&&(this._current_attribute=e),!0},WYMeditor.XhtmlParser.prototype.DoubleQuotedAttribute=function(e,t){return WYMeditor.LEXER_UNMATCHED==t&&(this._tag_attributes[this._current_attribute]=e),!0},WYMeditor.XhtmlParser.prototype.SingleQuotedAttribute=function(e,t){return WYMeditor.LEXER_UNMATCHED==t&&(this._tag_attributes[this._current_attribute]=e),!0},WYMeditor.XhtmlParser.prototype.UnquotedAttribute=function(e,t){return this._tag_attributes[this._current_attribute]=e.replace(/^=/,""),!0},WYMeditor.XhtmlSaxListener=function(){return this.output="",this.helper=new WYMeditor.XmlHelper,this._open_tags={},this.validator=WYMeditor.XhtmlValidator,this._tag_stack=[],this.avoided_tags=[],this.entities={"&nbsp;":"&#160;","&iexcl;":"&#161;","&cent;":"&#162;","&pound;":"&#163;","&curren;":"&#164;","&yen;":"&#165;","&brvbar;":"&#166;","&sect;":"&#167;","&uml;":"&#168;","&copy;":"&#169;","&ordf;":"&#170;","&laquo;":"&#171;","&not;":"&#172;","&shy;":"&#173;","&reg;":"&#174;","&macr;":"&#175;","&deg;":"&#176;","&plusmn;":"&#177;","&sup2;":"&#178;","&sup3;":"&#179;","&acute;":"&#180;","&micro;":"&#181;","&para;":"&#182;","&middot;":"&#183;","&cedil;":"&#184;","&sup1;":"&#185;","&ordm;":"&#186;","&raquo;":"&#187;","&frac14;":"&#188;","&frac12;":"&#189;","&frac34;":"&#190;","&iquest;":"&#191;","&Agrave;":"&#192;","&Aacute;":"&#193;","&Acirc;":"&#194;","&Atilde;":"&#195;","&Auml;":"&#196;","&Aring;":"&#197;","&AElig;":"&#198;","&Ccedil;":"&#199;","&Egrave;":"&#200;","&Eacute;":"&#201;","&Ecirc;":"&#202;","&Euml;":"&#203;","&Igrave;":"&#204;","&Iacute;":"&#205;","&Icirc;":"&#206;","&Iuml;":"&#207;","&ETH;":"&#208;","&Ntilde;":"&#209;","&Ograve;":"&#210;","&Oacute;":"&#211;","&Ocirc;":"&#212;","&Otilde;":"&#213;","&Ouml;":"&#214;","&times;":"&#215;","&Oslash;":"&#216;","&Ugrave;":"&#217;","&Uacute;":"&#218;","&Ucirc;":"&#219;","&Uuml;":"&#220;","&Yacute;":"&#221;","&THORN;":"&#222;","&szlig;":"&#223;","&agrave;":"&#224;","&aacute;":"&#225;","&acirc;":"&#226;","&atilde;":"&#227;","&auml;":"&#228;","&aring;":"&#229;","&aelig;":"&#230;","&ccedil;":"&#231;","&egrave;":"&#232;","&eacute;":"&#233;","&ecirc;":"&#234;","&euml;":"&#235;","&igrave;":"&#236;","&iacute;":"&#237;","&icirc;":"&#238;","&iuml;":"&#239;","&eth;":"&#240;","&ntilde;":"&#241;","&ograve;":"&#242;","&oacute;":"&#243;","&ocirc;":"&#244;","&otilde;":"&#245;","&ouml;":"&#246;","&divide;":"&#247;","&oslash;":"&#248;","&ugrave;":"&#249;","&uacute;":"&#250;","&ucirc;":"&#251;","&uuml;":"&#252;","&yacute;":"&#253;","&thorn;":"&#254;","&yuml;":"&#255;","&OElig;":"&#338;","&oelig;":"&#339;","&Scaron;":"&#352;","&scaron;":"&#353;","&Yuml;":"&#376;","&fnof;":"&#402;","&circ;":"&#710;","&tilde;":"&#732;","&Alpha;":"&#913;","&Beta;":"&#914;","&Gamma;":"&#915;","&Delta;":"&#916;","&Epsilon;":"&#917;","&Zeta;":"&#918;","&Eta;":"&#919;","&Theta;":"&#920;","&Iota;":"&#921;","&Kappa;":"&#922;","&Lambda;":"&#923;","&Mu;":"&#924;","&Nu;":"&#925;","&Xi;":"&#926;","&Omicron;":"&#927;","&Pi;":"&#928;","&Rho;":"&#929;","&Sigma;":"&#931;","&Tau;":"&#932;","&Upsilon;":"&#933;","&Phi;":"&#934;","&Chi;":"&#935;","&Psi;":"&#936;","&Omega;":"&#937;","&alpha;":"&#945;","&beta;":"&#946;","&gamma;":"&#947;","&delta;":"&#948;","&epsilon;":"&#949;","&zeta;":"&#950;","&eta;":"&#951;","&theta;":"&#952;","&iota;":"&#953;","&kappa;":"&#954;","&lambda;":"&#955;","&mu;":"&#956;","&nu;":"&#957;","&xi;":"&#958;","&omicron;":"&#959;","&pi;":"&#960;","&rho;":"&#961;","&sigmaf;":"&#962;","&sigma;":"&#963;","&tau;":"&#964;","&upsilon;":"&#965;","&phi;":"&#966;","&chi;":"&#967;","&psi;":"&#968;","&omega;":"&#969;","&thetasym;":"&#977;","&upsih;":"&#978;","&piv;":"&#982;","&ensp;":"&#8194;","&emsp;":"&#8195;","&thinsp;":"&#8201;","&zwnj;":"&#8204;","&zwj;":"&#8205;","&lrm;":"&#8206;","&rlm;":"&#8207;","&ndash;":"&#8211;","&mdash;":"&#8212;","&lsquo;":"&#8216;","&rsquo;":"&#8217;","&sbquo;":"&#8218;","&ldquo;":"&#8220;","&rdquo;":"&#8221;","&bdquo;":"&#8222;","&dagger;":"&#8224;","&Dagger;":"&#8225;","&bull;":"&#8226;","&hellip;":"&#8230;","&permil;":"&#8240;","&prime;":"&#8242;","&Prime;":"&#8243;","&lsaquo;":"&#8249;","&rsaquo;":"&#8250;","&oline;":"&#8254;","&frasl;":"&#8260;","&euro;":"&#8364;","&image;":"&#8465;","&weierp;":"&#8472;","&real;":"&#8476;","&trade;":"&#8482;","&alefsym;":"&#8501;","&larr;":"&#8592;","&uarr;":"&#8593;","&rarr;":"&#8594;","&darr;":"&#8595;","&harr;":"&#8596;","&crarr;":"&#8629;","&lArr;":"&#8656;","&uArr;":"&#8657;","&rArr;":"&#8658;","&dArr;":"&#8659;","&hArr;":"&#8660;","&forall;":"&#8704;","&part;":"&#8706;","&exist;":"&#8707;","&empty;":"&#8709;","&nabla;":"&#8711;","&isin;":"&#8712;","&notin;":"&#8713;","&ni;":"&#8715;","&prod;":"&#8719;","&sum;":"&#8721;","&minus;":"&#8722;","&lowast;":"&#8727;","&radic;":"&#8730;","&prop;":"&#8733;","&infin;":"&#8734;","&ang;":"&#8736;","&and;":"&#8743;","&or;":"&#8744;","&cap;":"&#8745;","&cup;":"&#8746;","&int;":"&#8747;","&there4;":"&#8756;","&sim;":"&#8764;","&cong;":"&#8773;","&asymp;":"&#8776;","&ne;":"&#8800;","&equiv;":"&#8801;","&le;":"&#8804;","&ge;":"&#8805;","&sub;":"&#8834;","&sup;":"&#8835;","&nsub;":"&#8836;","&sube;":"&#8838;","&supe;":"&#8839;","&oplus;":"&#8853;","&otimes;":"&#8855;","&perp;":"&#8869;","&sdot;":"&#8901;","&lceil;":"&#8968;","&rceil;":"&#8969;","&lfloor;":"&#8970;","&rfloor;":"&#8971;","&lang;":"&#9001;","&rang;":"&#9002;","&loz;":"&#9674;","&spades;":"&#9824;","&clubs;":"&#9827;","&hearts;":"&#9829;","&diams;":"&#9830;"},this.block_tags=["a","abbr","acronym","address","area","b","base","bdo","big","blockquote","body","button","caption","cite","code","col","colgroup","dd","del","div","dfn","dl","dt","em","fieldset","form","head","h1","h2","h3","h4","h5","h6","html","i","ins","kbd","label","legend","li","map","noscript","object","ol","optgroup","option","p","param","pre","q","samp","script","select","small","span","strong","style","sub","sup","table","tbody","td","textarea","tfoot","th","thead","title","tr","tt","ul","var","extends"],this.inline_tags=["br","hr","img","input"],this},WYMeditor.XhtmlSaxListener.prototype.shouldCloseTagAutomatically=function(e,t,n){var n=n||!1;return!("td"!=e||!(n&&"tr"==t||!n&&"td"==t))||!("option"!=e||!(n&&"select"==t||!n&&"option"==t))},WYMeditor.XhtmlSaxListener.prototype.beforeParsing=function(e){return this.output="",e},WYMeditor.XhtmlSaxListener.prototype.afterParsing=function(e){return e=this.replaceNamedEntities(e),e=this.joinRepeatedEntities(e),e=this.removeEmptyTags(e),e=this.removeBrInPre(e)},WYMeditor.XhtmlSaxListener.prototype.replaceNamedEntities=function(e){for(var t in this.entities)e=e.replace(new RegExp(t,"g"),this.entities[t]);return e},WYMeditor.XhtmlSaxListener.prototype.joinRepeatedEntities=function(e){var t="em|strong|sub|sup|acronym|pre|del|address";return e.replace(new RegExp("</("+t+")><\\1>",""),"").replace(new RegExp("(s*<("+t+")>s*){2}(.*)(s*</\\2>s*){2}",""),"<$2>$3<$2>")},WYMeditor.XhtmlSaxListener.prototype.removeEmptyTags=function(e){return e.replace(new RegExp("<("+this.block_tags.join("|").replace(/\|td/,"").replace(/\|p/,"").replace(/\|th/,"")+")>(<br />|&#160;|&nbsp;|\\s)*</\\1>","g"),"")},WYMeditor.XhtmlSaxListener.prototype.removeBrInPre=function(e){var t=e.match(new RegExp("<pre[^>]*>(.*?)</pre>","gmi"));if(t)for(var n=0;n<t.length;n++)e=e.replace(t[n],t[n].replace(new RegExp("<br />","g"),String.fromCharCode(13,10)));return e},WYMeditor.XhtmlSaxListener.prototype.getResult=function(){return this.output},WYMeditor.XhtmlSaxListener.prototype.getTagReplacements=function(){return{b:"strong",i:"em"}},WYMeditor.XhtmlSaxListener.prototype.addContent=function(e){this.output+=e},WYMeditor.XhtmlSaxListener.prototype.addComment=function(e){this.remove_comments&&(this.output+=e)},WYMeditor.XhtmlSaxListener.prototype.addScript=function(e){this.remove_scripts||(this.output+=e)},WYMeditor.XhtmlSaxListener.prototype.addCss=function(e){this.remove_embeded_styles||(this.output+=e)},WYMeditor.XhtmlSaxListener.prototype.openBlockTag=function(e,t){this.output+=this.helper.tag(e,this.validator.getValidTagAttributes(e,t),!0)},WYMeditor.XhtmlSaxListener.prototype.inlineTag=function(e,t){this.output+=this.helper.tag(e,this.validator.getValidTagAttributes(e,t))},WYMeditor.XhtmlSaxListener.prototype.openUnknownTag=function(e,t){},WYMeditor.XhtmlSaxListener.prototype.closeBlockTag=function(e){this.output=this.output.replace(/<br \/>$/,"")+this._getClosingTagContent("before",e)+"</"+e+">"+this._getClosingTagContent("after",e)},WYMeditor.XhtmlSaxListener.prototype.closeUnknownTag=function(e){},WYMeditor.XhtmlSaxListener.prototype.closeUnopenedTag=function(e){this.output+="</"+e+">"},WYMeditor.XhtmlSaxListener.prototype.avoidStylingTagsAndAttributes=function(){this.avoided_tags=["div","span"],this.validator.skiped_attributes=["style"],this.validator.skiped_attribute_values=["MsoNormal","main1"],this._avoiding_tags_implicitly=!0},WYMeditor.XhtmlSaxListener.prototype.allowStylingTagsAndAttributes=function(){this.avoided_tags=[],this.validator.skiped_attributes=[],this.validator.skiped_attribute_values=[],this._avoiding_tags_implicitly=!1},WYMeditor.XhtmlSaxListener.prototype.isBlockTag=function(e){return!WYMeditor.Helper.contains(this.avoided_tags,e)&&WYMeditor.Helper.contains(this.block_tags,e)},WYMeditor.XhtmlSaxListener.prototype.isInlineTag=function(e){return!WYMeditor.Helper.contains(this.avoided_tags,e)&&WYMeditor.Helper.contains(this.inline_tags,e)},WYMeditor.XhtmlSaxListener.prototype.insertContentAfterClosingTag=function(e,t){this._insertContentWhenClosingTag("after",e,t)},WYMeditor.XhtmlSaxListener.prototype.insertContentBeforeClosingTag=function(e,t){this._insertContentWhenClosingTag("before",e,t)},WYMeditor.XhtmlSaxListener.prototype.fixNestingBeforeOpeningBlockTag=function(e,t){"li"==e||"ul"!=e&&"ol"!=e||!this.last_tag||this.last_tag_opened||"li"!=this.last_tag||(this.output=this.output.replace(/<\/li>$/,""),this.insertContentAfterClosingTag(e,"</li>"))},WYMeditor.XhtmlSaxListener.prototype._insertContentWhenClosingTag=function(e,t,n){this["_insert_"+e+"_closing"]||(this["_insert_"+e+"_closing"]=[]),this["_insert_"+e+"_closing"][t]||(this["_insert_"+e+"_closing"][t]=[]),this["_insert_"+e+"_closing"][t].push(n)},WYMeditor.XhtmlSaxListener.prototype._getClosingTagContent=function(e,t){return this["_insert_"+e+"_closing"]&&this["_insert_"+e+"_closing"][t]&&this["_insert_"+e+"_closing"][t].length>0?this["_insert_"+e+"_closing"][t].pop():""},WYMeditor.WymCssLexer=function(e,t){var t=void 0===t||t;return jQuery.extend(this,new WYMeditor.Lexer(e,t?"Ignore":"WymCss")),this.mapHandler("WymCss","Ignore"),1==t&&(this.addEntryPattern("/\\*[<\\s]*WYMeditor[>\\s]*\\*/","Ignore","WymCss"),this.addExitPattern("/\\*[</\\s]*WYMeditor[>\\s]*\\*/","WymCss")),this.addSpecialPattern("[\\sa-z1-6]*\\.[a-z-_0-9]+","WymCss","WymCssStyleDeclaration"),this.addEntryPattern("/\\*","WymCss","WymCssComment"),this.addExitPattern("\\*/","WymCssComment"),this.addEntryPattern("{","WymCss","WymCssStyle"),this.addExitPattern("}","WymCssStyle"),this.addEntryPattern("/\\*","WymCssStyle","WymCssFeedbackStyle"),this.addExitPattern("\\*/","WymCssFeedbackStyle"),this},WYMeditor.WymCssParser=function(){return this._in_style=!1,this._has_title=!1,this.only_wym_blocks=!0,this.css_settings={classesItems:[],editorStyles:[],dialogStyles:[]},this},WYMeditor.WymCssParser.prototype.parse=function(e,t){var t=void 0===t?this.only_wym_blocks:t;this._Lexer=new WYMeditor.WymCssLexer(this,t),this._Lexer.parse(e)},WYMeditor.WymCssParser.prototype.Ignore=function(e,t){return!0},WYMeditor.WymCssParser.prototype.WymCssComment=function(e,t){return!e.match(/end[a-z0-9\s]*wym[a-z0-9\s]*/im)&&(t==WYMeditor.LEXER_UNMATCHED&&(this._in_style?this._current_item[this._current_element]&&(this._current_item[this._current_element].expressions?this._current_item[this._current_element].expressions.push(e):this._current_item[this._current_element].expressions=[e]):(this._has_title=!0,this._current_item={title:WYMeditor.Helper.trim(e)}),this._in_style=!0),!0)},WYMeditor.WymCssParser.prototype.WymCssStyle=function(e,t){return t==WYMeditor.LEXER_UNMATCHED?""!=(e=WYMeditor.Helper.trim(e))&&(this._current_item[this._current_element].style=e):t==WYMeditor.LEXER_EXIT&&(this._in_style=!1,this._has_title=!1,this.addStyleSetting(this._current_item)),!0},WYMeditor.WymCssParser.prototype.WymCssFeedbackStyle=function(e,t){return t==WYMeditor.LEXER_UNMATCHED&&(this._current_item[this._current_element].feedback_style=e.replace(/^([\s\/\*]*)|([\s\/\*]*)$/gm,"")),!0},WYMeditor.WymCssParser.prototype.WymCssStyleDeclaration=function(e){e=e.replace(/^([\s\.]*)|([\s\.*]*)$/gm,"");var t="";if(e.indexOf(".")>0){var n=e.split(".");this._current_element=n[1];var t=n[0]}else this._current_element=e;return this._has_title||(this._current_item={title:(t?t.toUpperCase()+": ":"")+this._current_element},this._has_title=!0),this._current_item[this._current_element]||(this._current_item[this._current_element]={name:this._current_element}),t&&(this._current_item[this._current_element].tags?this._current_item[this._current_element].tags.push(t):this._current_item[this._current_element].tags=[t]),!0},WYMeditor.WymCssParser.prototype.addStyleSetting=function(e){for(var t in e){var n=e[t];"object"==typeof n&&"title"!=t&&(this.css_settings.classesItems.push({name:WYMeditor.Helper.trim(n.name),title:e.title,expr:WYMeditor.Helper.trim((n.expressions||n.tags).join(", "))}),n.feedback_style&&this.css_settings.editorStyles.push({name:"."+WYMeditor.Helper.trim(n.name),css:n.feedback_style}),n.style&&this.css_settings.dialogStyles.push({name:"."+WYMeditor.Helper.trim(n.name),css:n.style}))}},jQuery.fn.isPhantomNode=function(){return 3==this[0].nodeType&&!/[^\t\n\r ]/.test(this[0].data)},WYMeditor.isPhantomNode=function(e){return 3==e.nodeType&&!/[^\t\n\r ]/.test(e.data)},WYMeditor.isPhantomString=function(e){return!/[^\t\n\r ]/.test(e)},jQuery.fn.parentsOrSelf=function(e){var t=this;return 3==t[0].nodeType&&(t=t.parents().slice(0,1)),1==t.filter(e).size()?t:t.parents(e).slice(0,1)},WYMeditor.Helper={replaceAll:function(e,t,n){var i=new RegExp(t,"g");return e.replace(i,n)},insertAt:function(e,t,n){return e.substr(0,n)+t+e.substring(n)},trim:function(e){return e.replace(/^(\s*)|(\s*)$/gm,"")},contains:function(e,t){for(var n=0;n<e.length;n++)if(e[n]===t)return!0;return!1},indexOf:function(e,t){for(var n=-1,i=0;i<e.length;i++)if(e[i]==t){n=i;break}return n},findByName:function(e,t){for(var n=0;n<e.length;n++){var i=e[n];if(i.name==t)return i}return null}},WYMeditor.WymClassExplorer=function(e){this._wym=e,this._class="className",this._newLine="\r\n"},WYMeditor.WymClassExplorer.prototype.initIframe=function(iframe){this._iframe=iframe,this._doc=iframe.contentWindow.document;var styles=this._doc.styleSheets[0],aCss=eval(this._options.editorStyles);this.addCssRules(this._doc,aCss),this._doc.title=this._wym._index,jQuery("html",this._doc).attr("dir",this._options.direction),jQuery(this._doc.body).html(this._wym._html);var wym=this;this._doc.body.onfocus=function(){wym._doc.designMode="on",wym._doc=iframe.contentWindow.document},this._doc.onbeforedeactivate=function(){wym.saveCaret()},this._doc.onkeyup=function(){wym.saveCaret(),wym.keyup()},this._doc.onclick=function(){wym.saveCaret()},this._doc.body.onbeforepaste=function(){wym._iframe.contentWindow.event.returnValue=!1},this._doc.body.onpaste=function(){wym._iframe.contentWindow.event.returnValue=!1,wym.paste(window.clipboardData.getData("Text"))},this._initialized&&(jQuery.isFunction(this._options.preBind)&&this._options.preBind(this),this._wym.bindEvents(),jQuery.isFunction(this._options.postInit)&&this._options.postInit(this),this.listen()),this._initialized=!0,this._doc.designMode="on";try{this._doc=iframe.contentWindow.document}catch(e){}},WYMeditor.WymClassExplorer.prototype._exec=function(e,t){switch(e){case WYMeditor.INDENT:case WYMeditor.OUTDENT:var n=this.findUp(this.container(),WYMeditor.LI);if(n){var i=n.parentNode.parentNode;(n.parentNode.childNodes.length>1||i.tagName.toLowerCase()==WYMeditor.OL||i.tagName.toLowerCase()==WYMeditor.UL)&&this._doc.execCommand(e)}break;default:t?this._doc.execCommand(e,!1,t):this._doc.execCommand(e)}this.listen()},WYMeditor.WymClassExplorer.prototype.selected=function(){var e=this._iframe.contentWindow.document.caretPos;if(null!=e&&void 0!=e.parentElement)return e.parentElement()},WYMeditor.WymClassExplorer.prototype.saveCaret=function(){this._doc.caretPos=this._doc.selection.createRange()},WYMeditor.WymClassExplorer.prototype.addCssRule=function(e,t){e.addRule(t.name,t.css)},WYMeditor.WymClassExplorer.prototype.insert=function(e){var t=this._doc.selection.createRange();if(jQuery(t.parentElement()).parents(this._options.iframeBodySelector).is("*"))try{t.pasteHTML(e)}catch(e){}else this.paste(e)},WYMeditor.WymClassExplorer.prototype.wrap=function(e,t){var n=this._doc.selection.createRange();if(jQuery(n.parentElement()).parents(this._options.iframeBodySelector).is("*"))try{n.pasteHTML(e+n.text+t)}catch(e){}},WYMeditor.WymClassExplorer.prototype.unwrap=function(){var e=this._doc.selection.createRange();if(jQuery(e.parentElement()).parents(this._options.iframeBodySelector).is("*"))try{var t=e.text;this._exec("Cut"),e.pasteHTML(t)}catch(e){}},WYMeditor.WymClassExplorer.prototype.keyup=function(){this._selected_image=null},WYMeditor.WymClassExplorer.prototype.setFocusToNode=function(e){var t=this._doc.selection.createRange();t.moveToElementText(e),t.collapse(!1),t.move("character",-1),t.select(),e.focus()},WYMeditor.WymClassMozilla=function(e){this._wym=e,this._class="class",this._newLine="\n"},WYMeditor.WymClassMozilla.prototype.initIframe=function(iframe){this._iframe=iframe,this._doc=iframe.contentDocument;var styles=this._doc.styleSheets[0],aCss=eval(this._options.editorStyles);this.addCssRules(this._doc,aCss),this._doc.title=this._wym._index,jQuery("html",this._doc).attr("dir",this._options.direction),this.html(this._wym._html),this.enableDesignMode(),jQuery.isFunction(this._options.preBind)&&this._options.preBind(this),this._wym.bindEvents(),jQuery(this._doc).bind("keydown",this.keydown),jQuery(this._doc).bind("keyup",this.keyup),jQuery(this._doc).bind("focus",this.enableDesignMode),jQuery.isFunction(this._options.postInit)&&this._options.postInit(this),this.listen()},WYMeditor.WymClassMozilla.prototype.html=function(e){if("string"!=typeof e)return jQuery(this._doc.body).html();try{this._doc.designMode="off"}catch(e){}e=e.replace(/<em(\b[^>]*)>/gi,"<i$1>").replace(/<\/em>/gi,"</i>").replace(/<strong(\b[^>]*)>/gi,"<b$1>").replace(/<\/strong>/gi,"</b>"),jQuery(this._doc.body).html(e),this.enableDesignMode()},WYMeditor.WymClassMozilla.prototype._exec=function(e,t){if(!this.selected())return!1;switch(e){case WYMeditor.INDENT:case WYMeditor.OUTDENT:var n=this.selected(),i=this._iframe.contentWindow.getSelection(),r=i.anchorNode;if("#text"==r.nodeName&&(r=r.parentNode),n=this.findUp(n,WYMeditor.BLOCKS),r=this.findUp(r,WYMeditor.BLOCKS),n&&n==r&&n.tagName.toLowerCase()==WYMeditor.LI){var a=n.parentNode.parentNode;(n.parentNode.childNodes.length>1||a.tagName.toLowerCase()==WYMeditor.OL||a.tagName.toLowerCase()==WYMeditor.UL)&&this._doc.execCommand(e,"",null)}break;default:t?this._doc.execCommand(e,"",t):this._doc.execCommand(e,"",null)}this.selected().tagName.toLowerCase()==WYMeditor.BODY&&this._exec(WYMeditor.FORMAT_BLOCK,WYMeditor.P),this.listen()},WYMeditor.WymClassMozilla.prototype.selected=function(){var e=this._iframe.contentWindow.getSelection(),t=e.focusNode;return t?"#text"==t.nodeName?t.parentNode:t:null},WYMeditor.WymClassMozilla.prototype.addCssRule=function(e,t){e.insertRule(t.name+" {"+t.css+"}",e.cssRules.length)},WYMeditor.WymClassMozilla.prototype.keydown=function(e){var t=WYMeditor.INSTANCES[this.title],n=null;if(e.keyCode===WYMeditor.KEY.ENTER&&(n=t.selected())){var i=$(n),r=(i.parent(),i.parents(".embedded-item"));if(r.size()){var a=$("<p/>");return i.hasClass("title")?r.before(a):i.hasClass("content")&&r.after(a),t.setFocusToNode(a.get(0)),!1}}if(e.ctrlKey){if(66==e.keyCode)return t._exec(WYMeditor.BOLD),!1;if(73==e.keyCode)return t._exec(WYMeditor.ITALIC),!1}else 13==e.keyCode&&(e.shiftKey||(n=t.selected())&&n.tagName.toLowerCase()==WYMeditor.PRE&&(e.preventDefault(),t.insert("<p></p>")))},WYMeditor.WymClassMozilla.prototype.keyup=function(e){var t=WYMeditor.INSTANCES[this.title];t._selected_image=null;var n=null;if(13!=e.keyCode||e.shiftKey){if(8!=e.keyCode&&17!=e.keyCode&&46!=e.keyCode&&224!=e.keyCode&&!e.metaKey&&!e.ctrlKey){n=t.selected();var i=n.tagName.toLowerCase();"strong"!=i&&"b"!=i&&"em"!=i&&"i"!=i&&"sub"!=i&&"sup"!=i&&"a"!=i||(i=n.parentNode.tagName.toLowerCase()),i==WYMeditor.BODY&&t._exec(WYMeditor.FORMAT_BLOCK,WYMeditor.P)}}else jQuery(t._doc.body).children(WYMeditor.BR).remove()},WYMeditor.WymClassMozilla.prototype.enableDesignMode=function(){if("off"==this.designMode)try{this.designMode="on",this.execCommand("styleWithCSS","",!1)}catch(e){}},WYMeditor.WymClassMozilla.prototype.setFocusToNode=function(e){var t=document.createRange();t.selectNode(e);var n=this._iframe.contentWindow.getSelection();n.addRange(t),n.collapse(e,e.childNodes.length),this._iframe.contentWindow.focus()},WYMeditor.WymClassMozilla.prototype.openBlockTag=function(e,t){var t=this.validator.getValidTagAttributes(e,t);if("span"==e&&t.style){var n=this.getTagForStyle(t.style);if(!n)return;this._tag_stack.pop();var e=n;this._tag_stack.push(n),t.style=""}this.output+=this.helper.tag(e,t,!0)},WYMeditor.WymClassMozilla.prototype.getTagForStyle=function(e){return/bold/.test(e)?"strong":/italic/.test(e)?"em":/sub/.test(e)?"sub":!!/sub/.test(e)&&"super"},WYMeditor.WymClassOpera=function(e){this._wym=e,this._class="class",this._newLine="\r\n"},WYMeditor.WymClassOpera.prototype.initIframe=function(iframe){this._iframe=iframe,this._doc=iframe.contentWindow.document;var styles=this._doc.styleSheets[0],aCss=eval(this._options.editorStyles);this.addCssRules(this._doc,aCss),this._doc.title=this._wym._index,jQuery("html",this._doc).attr("dir",this._options.direction),this._doc.designMode="on",this.html(this._wym._html),jQuery.isFunction(this._options.preBind)&&this._options.preBind(this),this._wym.bindEvents(),jQuery(this._doc).bind("keydown",this.keydown),jQuery(this._doc).bind("keyup",this.keyup),jQuery.isFunction(this._options.postInit)&&this._options.postInit(this),this.listen()},WYMeditor.WymClassOpera.prototype._exec=function(e,t){t?this._doc.execCommand(e,!1,t):this._doc.execCommand(e),this.listen()},WYMeditor.WymClassOpera.prototype.selected=function(){var e=this._iframe.contentWindow.getSelection(),t=e.focusNode;return t?"#text"==t.nodeName?t.parentNode:t:null},WYMeditor.WymClassOpera.prototype.addCssRule=function(e,t){e.insertRule(t.name+" {"+t.css+"}",e.cssRules.length)},WYMeditor.WymClassOpera.prototype.keydown=function(e){var t=WYMeditor.INSTANCES[this.title],n=t._iframe.contentWindow.getSelection();startNode=n.getRangeAt(0).startContainer,jQuery(startNode).parentsOrSelf(WYMeditor.MAIN_CONTAINERS.join(","))[0]||jQuery(startNode).parentsOrSelf("li")||e.keyCode==WYMeditor.KEY.ENTER||e.keyCode==WYMeditor.KEY.LEFT||e.keyCode==WYMeditor.KEY.UP||e.keyCode==WYMeditor.KEY.RIGHT||e.keyCode==WYMeditor.KEY.DOWN||e.keyCode==WYMeditor.KEY.BACKSPACE||e.keyCode==WYMeditor.KEY.DELETE||t._exec(WYMeditor.FORMAT_BLOCK,WYMeditor.P)},WYMeditor.WymClassOpera.prototype.keyup=function(e){WYMeditor.INSTANCES[this.title]._selected_image=null},WYMeditor.WymClassOpera.prototype.setFocusToNode=function(e){},WYMeditor.WymClassSafari=function(e){this._wym=e,this._class="class",this._newLine="\n"},WYMeditor.WymClassSafari.prototype.initIframe=function(iframe){this._iframe=iframe,this._doc=iframe.contentDocument;var styles=this._doc.styleSheets[0],aCss=eval(this._options.editorStyles);this.addCssRules(this._doc,aCss),this._doc.title=this._wym._index,jQuery("html",this._doc).attr("dir",this._options.direction),this._doc.designMode="on",this.html(this._wym._html),jQuery.isFunction(this._options.preBind)&&this._options.preBind(this),this._wym.bindEvents(),jQuery(this._doc).bind("keydown",this.keydown),jQuery(this._doc).bind("keyup",this.keyup),jQuery.isFunction(this._options.postInit)&&this._options.postInit(this),this.listen()},WYMeditor.WymClassSafari.prototype._exec=function(e,t){if(!this.selected())return!1;switch(e){case WYMeditor.INDENT:case WYMeditor.OUTDENT:var n=this.selected(),i=this._iframe.contentWindow.getSelection(),r=i.anchorNode;if("#text"==r.nodeName&&(r=r.parentNode),n=this.findUp(n,WYMeditor.BLOCKS),r=this.findUp(r,WYMeditor.BLOCKS),n&&n==r&&n.tagName.toLowerCase()==WYMeditor.LI){var a=n.parentNode.parentNode;(n.parentNode.childNodes.length>1||a.tagName.toLowerCase()==WYMeditor.OL||a.tagName.toLowerCase()==WYMeditor.UL)&&this._doc.execCommand(e,"",null)}break;case WYMeditor.INSERT_ORDEREDLIST:case WYMeditor.INSERT_UNORDEREDLIST:this._doc.execCommand(e,"",null);var n=this.selected(),o=this.findUp(n,WYMeditor.MAIN_CONTAINERS);o&&jQuery(o).replaceWith(jQuery(o).html());break;default:t?this._doc.execCommand(e,"",t):this._doc.execCommand(e,"",null)}var o=this.selected();o&&o.tagName.toLowerCase()==WYMeditor.BODY&&this._exec(WYMeditor.FORMAT_BLOCK,WYMeditor.P),this.listen()},WYMeditor.WymClassSafari.prototype.selected=function(){var e=this._iframe.contentWindow.getSelection(),t=e.focusNode;return t?"#text"==t.nodeName?t.parentNode:t:null},WYMeditor.WymClassSafari.prototype.addCssRule=function(e,t){e.insertRule(t.name+" {"+t.css+"}",e.cssRules.length)},WYMeditor.WymClassSafari.prototype.keydown=function(e){var t=WYMeditor.INSTANCES[this.title];if(e.keyCode===WYMeditor.KEY.ENTER){var n=t.selected();if(n){var i=$(n),r=(i.parent(),i.parents(".embedded-item"));if(r.size()){var a=$("<p/>");return i.hasClass("title")?r.before(a):i.hasClass("content")&&r.after(a),t.setFocusToNode(a.get(0)),!1}}}if(e.ctrlKey){if(66==e.keyCode)return t._exec(WYMeditor.BOLD),!1;if(73==e.keyCode)return t._exec(WYMeditor.ITALIC),!1}},WYMeditor.WymClassSafari.prototype.keyup=function(e){var t=WYMeditor.INSTANCES[this.title];t._selected_image=null;var n=null;if(13!=e.keyCode||e.shiftKey||(jQuery(t._doc.body).children(WYMeditor.BR).remove(),(n=t.selected())&&n.tagName.toLowerCase()==WYMeditor.PRE&&t._exec(WYMeditor.FORMAT_BLOCK,WYMeditor.P)),13==e.keyCode&&e.shiftKey&&t._exec("InsertLineBreak"),8!=e.keyCode&&17!=e.keyCode&&46!=e.keyCode&&224!=e.keyCode&&!e.metaKey&&!e.ctrlKey){n=t.selected();var i=n.tagName.toLowerCase();"strong"!=i&&"b"!=i&&"em"!=i&&"i"!=i&&"sub"!=i&&"sup"!=i&&"a"!=i&&"span"!=i||(i=n.parentNode.tagName.toLowerCase()),i!=WYMeditor.BODY&&i!=WYMeditor.DIV||t._exec(WYMeditor.FORMAT_BLOCK,WYMeditor.P)}},WYMeditor.WymClassSafari.prototype.setFocusToNode=function(e){var t=this._iframe.contentDocument.createRange();t.selectNode(e);var n=this._iframe.contentWindow.getSelection();n.addRange(t),n.collapse(e,e.childNodes.length),this._iframe.contentWindow.focus()},WYMeditor.WymClassSafari.prototype.openBlockTag=function(e,t){var t=this.validator.getValidTagAttributes(e,t);if("span"==e&&t.style){var n=this.getTagForStyle(t.style);if(!n)return;this._tag_stack.pop();var e=n;this._tag_stack.push(n),t.style="","string"==typeof t.class&&(t.class=t.class.replace(/apple-style-span/gi,""))}this.output+=this.helper.tag(e,t,!0)},WYMeditor.WymClassSafari.prototype.getTagForStyle=function(e){return/bold/.test(e)?"strong":/italic/.test(e)?"em":/sub/.test(e)?"sub":!!/super/.test(e)&&"sup"},window.WYMeditor=WYMeditor}).call(exports,__webpack_require__(0),__webpack_require__(0))},function(e,t,n){"use strict";(function(e,i,r,a){function o(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=n(336),l=o(s),c=n(338),d=o(c),u=n(339),h=o(u),f=n(17),p=o(f),g=n(4),m=o(g),_=n(3);o(_);n(73);window.JobDAG=l.default;var 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t={source:e.source,target:e.target};r.links.push(t)}),r},render:function(e){this.debug(this+".render:",e);var t=this;t.$el.html(["<header></header>",'<nav class="controls"></nav>','<figure class="graph"></figure>',"<footer></footer>"].join(""));var n=t.$graph();return t.component.eachVertex(function(e){t._liMap[e.name].render(0).$el.appendTo(n).data(t._VERTEX_NAME_DATA_KEY,e.name)}),t.renderGraph(),this},$graph:function(){return this.$(".graph")},renderGraph:function(e){function t(){n._updateLayout(),n.$graph().css("transform",["scale(",n.zoomLevel,",",n.zoomLevel,")"].join("")).width(n.layout.svg.width).height(n.layout.svg.height),n.renderSVG(),n.component.eachVertex(function(e){var t=n._liMap[e.name],i=n.layout.nodeMap[e.name];t.$el.css({top:i.y,left:i.x})})}this.debug(this+".renderGraph:",e);var n=this;return this.$el.is(":visible")?t():i.delay(t,0),this},_updateLayout:function(){this.debug(this+"._updateLayout:");var 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n=this,i=n.layout,r=d3.select(this.$graph().get(0)).select("svg");r.empty()&&(r=d3.select(this.$graph().get(0)).append("svg")),r.attr("width",i.svg.width).attr("height",i.svg.height);var a=r.selectAll(".connection").data(i.links);return a.enter().append("path").attr("class","connection").attr("id",function(e){return[e.source,e.target].join(n._LINK_ID_SEP)}).on("mouseover",e).on("mouseout",t),a.attr("d",function(e){return n._connectionPath(e)}),r.node()},_connectionPath:function(e){var t=(e.x2-e.x1)/this.layout.svg.width*this.layout.linkHeight;return["M",e.x1,",",e.y1," ","C",e.x1+0,",",e.y1-t," ",e.x2-0,",",e.y2-t," ",e.x2,",",e.y2].join("")},events:{"mouseover .graph > .list-item":function(e){this.highlightConnected(e.currentTarget,!0)},"mouseout  .graph > .list-item":function(e){this.highlightConnected(e.currentTarget,!1)}},highlightConnected:function(e,t){this.debug("highlightConnected",e,t),t=void 0===t||t;var n=this,i=n.component,o=t?r.prototype.addClass:r.prototype.removeClass,s=t?"connection highlighted":"connection",l=o.call(a(e),"highlighted"),c=l.data(n._VERTEX_NAME_DATA_KEY);i.edges({target:c}).forEach(function(e){var t=e.source,i=n._liMap[t];o.call(i.$el,"highlighted"),n.$("#"+t+n._LINK_ID_SEP+c).attr("class",s)}),i.vertices[c].eachEdge(function(e){var t=e.target,i=n._liMap[t];o.call(i.$el,"highlighted"),n.$("#"+c+n._LINK_ID_SEP+t).attr("class",s)})},zoom:function(e){return this.zoomLevel=Math.min(1,Math.max(this._MIN_ZOOM_LEVEL,e)),this.renderGraph()},toString:function(){return"HistoryStructureComponent("+this.model.id+")"}}),y=v.extend({className:v.prototype.className+" vertical",layoutDefaults:i.extend(i.clone(v.prototype.layoutDefaults),{linkAdjX:0,linkAdjY:4}),_updateLayout:function(){this.debug(this+"._updateLayout:");var e=this,t=e.layout;t.linkWidth=t.linkSpacing*i.size(t.nodeMap),t.svg.width=t.linkWidth+t.jobWidth,t.svg.height=0;var n=t.linkWidth,r=0;return i.each(t.nodeMap,function(i,a){i.x=n,i.y=r;var o=e._liMap[a];r+=o.$el.height()+t.jobSpacing}),t.linkHeight=t.svg.height=Math.max(t.svg.height,r),t.links.forEach(function(e){var n=t.nodeMap[e.source],i=t.nodeMap[e.target];e.x1=n.x+t.linkAdjX,e.y1=n.y+t.linkAdjY,e.x2=i.x+t.linkAdjX,e.y2=i.y+t.linkAdjY}),this.debug(JSON.stringify(t,null,"  ")),t},_connectionPath:function(e){var t=(e.y2-e.y1)/this.layout.svg.height*this.layout.linkWidth;return["M",e.x1,",",e.y1," ","C",e.x1-t,",",e.y1+0," ",e.x2-t,",",e.y2-0," 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e.componentViews=e.dag.weakComponentGraphArray().map(function(t){return e._createComponent(t)}),e.componentViews},_createComponent:function(e){return this.log(this+"._createComponent:",e),new(0,this._layoutToComponentClass[this.layout])({model:this.model,component:e})},render:function(e){this.log(this+".render:",e);var t=this;return t.$el.addClass("clear").html(['<div class="controls"></div>','<div class="components"></div>'].join("")),t.componentViews.forEach(function(e){e.render().$el.appendTo(t.$components())}),t},$components:function(){return this.$(".components")},changeLayout:function(e){if(!(e in this._layoutToComponentClass))throw new Error(this+": unknown layout: "+e);return this.layout=e,this._createComponents(),this.render()},toString:function(){return"HistoryStructureView("+this.model.id+")"}});t.default=b}).call(t,n(2),n(1),n(0),n(0))},function(e,t,n){"use strict";(function(e){function i(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var r=n(337),a=i(r),o=n(65),s=i(o),l=a.default.Graph,c=function(t){t=t||{};var n=this;n.filters=[],n._jobsData=[],n._historyContentsMap={},n._toolMap={},n._outputIdToJobMap={},n.noInputJobs=[],n.noOutputJobs=[],n.filteredSetMetadata=[],n.filteredErroredJobs=[],n.dataKeys=["jobs","historyContents","tools"],l.call(n,!0,e.pick(t,n.dataKeys),e.omit(t,n.dataKeys))};c.prototype=new a.default.Graph,c.prototype.constructor=c,(0,s.default)(c),c.prototype.init=function(t){t=t||{};var n=this;return n.options=e.defaults(t,{excludeSetMetadata:!1}),n.filters=n._initFilters(),l.prototype.init.call(n,t),n},c.prototype._initFilters=function(){var t=this,n=[];return t.options.excludeSetMetadata&&(t.filteredSetMetadata=[],n.push(function(e){return"__SET_METADATA__"!==e.job.tool_id||(t.filteredSetMetadata.push(e.job.id),!1)})),t.options.excludeErroredJobs&&(t.filteredErroredJobs=[],n.push(function(e){return"error"!==e.job.state||(t.filteredErroredJobs.push(e.job.id),!1)})),e.isArray(t.options.filters)&&(n=n.concat(t.options.filters)),t.debug("filters len:",n.length),n},c.prototype.read=function(t){var n=this;return e.has(t,"historyContents")&&e.has(t,"jobs")&&e.has(t,"tools")?(n.preprocessHistoryContents(t.historyContents||[]).preprocessTools(t.tools||{}).preprocessJobs(t.jobs||[]),n.createGraph(n._filterJobs()),n):l.prototype.read.call(this,t)},c.prototype.preprocessHistoryContents=function(t){this.info("processing history");var n=this;return n._historyContentsMap={},t.forEach(function(t,i){n._historyContentsMap[t.id]=e.clone(t)}),n},c.prototype.preprocessTools=function(t){this.info("processing tools");var n=this;return n._toolMap={},e.each(t,function(t,i){n._toolMap[i]=e.clone(t)}),n},c.prototype.preprocessJobs=function(t){this.info("processing jobs");var n=this;return n._outputIdToJobMap={},n._jobsData=n.sort(t).map(function(t){return n.preprocessJob(e.clone(t))}),n},c.prototype.sort=function(e){function t(e,t){return e.create_time>t.create_time?1:e.create_time<t.create_time?-1:0}return e.sort(t)},c.prototype.preprocessJob=function(t,n){var i=this,r={job:t};return r.inputs=i._processInputs(t),0===e.size(r.inputs)&&i.noInputJobs.push(t.id),r.outputs=i._processOutputs(t),0===e.size(r.outputs)&&i.noOutputJobs.push(t.id),r.tool=i._toolMap[t.tool_id],r},c.prototype._processInputs=function(t){var n=this,i=t.inputs,r={};return e.each(i,function(t,i){t=e.clone(n._validateInputOutput(t)),t.name=i,t.content=n._historyContentsMap[t.id],r[t.id]=t}),r},c.prototype._validateInputOutput=function(e){if(!e.id)throw new Error("No id on job input/output: ",JSON.stringify(e));if(!e.src||"hda"!==e.src)throw new Error("Bad src on job input/output: ",JSON.stringify(e));return e},c.prototype._processOutputs=function(t){var n=this,i=t.outputs,r={};return e.each(i,function(i,a){i=e.clone(n._validateInputOutput(i)),i.name=a,i.content=n._historyContentsMap[i.id],r[i.id]=i,n._outputIdToJobMap[i.id]=t.id}),r},c.prototype._filterJobs=function(){var e=this;return e._jobsData.filter(function(t,n){return e._filterJob(t,n)})},c.prototype._filterJob=function(e,t){for(var n=this,i=0;i<n.filters.length;i++)if(!n.filters[i].call(n,e))return n.debug("\t job",e.job.id," has been filtered out by function:\n",n.filters[i]),!1;return!0},c.prototype.createGraph=function(t){var n=this;return n.debug("connections:"),e.each(t,function(e){var t=e.job.id;n.debug("\t",t,e),n.createVertex(t,e)}),e.each(t,function(t){var i=t.job.id;e.each(t.inputs,function(e,t){var r=n._outputIdToJobMap[t];if(!r){r=n.createJobLessVertex(t).name}n.createEdge(r,i,n.directed,{dataset:t})})}),n.debug("final graph: 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n(e,n){var a=this;i.processFns.edge&&i.processFns.edge.call(i,a,n,t),t.discovered[e.name]||(t.discovered[e.name]=!0,t.edges.push({source:a.name,target:e.name}),r.push(e))}t=t||{discovered:{},edges:[]};var i=this,r=[];for(t.discovered[e.name]=!0,r.push(e);r.length;){var a=r.shift();i.processFns.vertexEarly&&i.processFns.vertexEarly.call(i,a,t),i.graph.eachAdjacent(a,n),i.processFns.vertexLate&&i.processFns.vertexLate.call(i,a,t)}return t};var h=function(e,t){var n=this;return d.call(this,e,t),n};h.prototype=new d,h.prototype.constructor=h,h.prototype._search=function(e,t){function n(e,n){var a=this;r.processFns.edge&&r.processFns.edge.call(r,a,n,t),t.discovered[e.name]||(t.edges.push({source:a.name,target:e.name}),i(e))}function 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r=e.nodes[n.source].name,a=e.nodes[n.target].name;t.createEdge(r,a,t.directed)}),t},s.prototype.readVerticesAndEdges=function(e){if(!e||!e.hasOwnProperty("vertices"))return this;var t=this;return e.vertices.forEach(function(e){t.createVertex(e.name,e.data)}),(e.edges||[]).forEach(function(e,n){t.createEdge(e.source,e.target,t.directed)}),t},s.prototype.createVertex=function(e,t){return this.vertices[e]?this.vertices[e]:this.vertices[e]=new o(e,t)},s.prototype.createEdge=function(e,t,n,i){var r=e===t;if(!this.allowReflexiveEdges&&r)return null;var o=this.vertices[e],s=this.vertices[t];if(!o||!s)return null;var l=this,c=new a(e,t,i);return o.edges[t]=c,o.degree+=1,l.numEdges+=1,r||n||l.createEdge(t,e,!0),c},s.prototype.edges=function(e){return Array.prototype.concat.apply([],this.eachVertex(function(t){return t.eachEdge(e)}))},s.prototype.eachVertex=function(e){return r(this.vertices,e)},s.prototype.adjacent=function(e){var t=this;return r(e.edges,function(e){return t.vertices[e.target]})},s.prototype.eachAdjacent=function(e,t){var n=this;return r(e.edges,function(i){var r=n.vertices[i.target];return t.call(e,r,i)})},s.prototype.print=function(){var e=this;return console.log("Graph has "+Object.keys(e.vertices).length+" vertices"),e.eachVertex(function(e){console.log(e.toString()),e.eachEdge(function(e){console.log("\t "+e)})}),e},s.prototype.toDOT=function(){var e=this,t=[];return t.push("graph bler {"),e.edges(function(e){t.push("\t"+e.from+" -- "+e.to+";")}),t.push("}"),t.join("\n")},s.prototype.toNodesAndLinks=function(){var e=this,t={};return{nodes:e.eachVertex(function(e,n,i){return t[e.name]=i,e.toJSON()}),links:e.edges(function(e){var n=e.toJSON();return n.source=t[e.source],n.target=t[e.target],n})}},s.prototype.toVerticesAndEdges=function(){var e=this;return{vertices:e.eachVertex(function(e,t){return e.toJSON()}),edges:e.edges(function(e){return e.toJSON()})}},s.prototype.breadthFirstSearch=function(e,t){return new u(this).search(e)},s.prototype.breadthFirstSearchTree=function(e,t){return new u(this).searchTree(e)},s.prototype.depthFirstSearch=function(e,t){return new h(this).search(e)},s.prototype.depthFirstSearchTree=function(e,t){return new h(this).searchTree(e)},s.prototype.weakComponents=function(){var e,t=this,n=this,i=[];for(t.directed&&(n=new s(!1,t.toNodesAndLinks())),e=Object.keys(n.vertices);e.length;){var r=n.vertices[e.shift()];i.push(function(i){var r=new h(n)._search(i);return e=e.filter(function(e){return!(e in r.discovered)}),{vertices:Object.keys(r.discovered).map(function(e){return t.vertices[e].toJSON()}),edges:r.edges.map(function(e){var n=void 0!==t.vertices[e.target].edges[e.source];if(t.directed&&n){var i=e.source;e.source=e.target,e.target=i}return e})}}(r))}return i},s.prototype.weakComponentGraph=function(){var e=this.weakComponents();return new s(this.directed,{vertices:e.reduce(function(e,t){return e.concat(t.vertices)},[]),edges:e.reduce(function(e,t){return e.concat(t.edges)},[])})},s.prototype.weakComponentGraphArray=function(){var e=this;return this.weakComponents().map(function(t){return new s(e.directed,t)})},t.default={Vertex:o,Edge:a,BreadthFirstSearch:u,DepthFirstSearch:h,Graph:s,randGraph:l}},function(e,t,n){"use strict";(function(e,i){function r(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=n(16),o=r(a),s=n(8),l=r(s),c=n(31),d=r(c),u=n(4),h=r(u),f=n(3),p=(r(f),h.default.SearchableModelMixin),g=e.Model.extend(h.default.LoggableMixin).extend(h.default.mixin(p,{_logNamespace:"jobs",defaults:{model_class:"Job",tool_id:null,exit_code:null,inputs:{},outputs:{},params:{},create_time:null,update_time:null,state:l.default.NEW},parse:function(e,t){return e.params=this.parseParams(e.params),e},parseParams:function(e){var t={};return i.each(e,function(e,n){t[n]=JSON.parse(e)}),t},initialize:function(e,t){this.debug(this+"(Job).initialize",e,t),this.set("params",this.parseParams(this.get("params")),{silent:!0}),this.outputCollection=e.outputCollection||new o.default.HistoryContents([]),this._setUpListeners()},_setUpListeners:function(){this.on("change:state",function(e,t){this.log(this+" has changed state:",e,t),this.inReadyState()&&this.trigger("state:ready",e,t,this.previous("state"))})},inReadyState:function(){return i.contains(l.default.READY_STATES,this.get("state"))},hasDetails:function(){return!i.isEmpty(this.get("outputs"))},urlRoot:Galaxy.root+"api/jobs",toString:function(){return["Job(",this.get("id"),":",this.get("tool_id"),")"].join("")}})),m=e.Collection.extend(h.default.LoggableMixin).extend({_logNamespace:"jobs",model:g,urlRoot:Galaxy.root+"api/jobs",url:function(){return this.urlRoot},intialize:function(e,t){console.debug(e,t)},ids:function(){return this.map(function(e){return e.get("id")})},notReady:function(){return this.filter(function(e){return!e.inReadyState()})},haveDetails:function(){return this.all(function(e){return e.hasDetails()})},queueDetailFetching:function(){var e=this,t=new d.default.AjaxQueue(this.map(function(e){return function(){return e.fetch({silent:!0})}}));return t.done(function(){e.trigger("details-loaded")}),t},matches:function(e){return this.filter(function(t){return t.matches(e)})},toString:function(){return["JobCollection(",this.length,")"].join("")}},{fromHistory:function(e){console.debug(this);var t=this,n=new t([]);return n.fetch({data:{history_id:e}}).done(function(){window.queue=n.queueDetailFetching()}),n}});t.default={Job:g,JobCollection:m}}).call(t,n(2),n(1))},function(e,t,n){"use strict";(function(e){function i(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var r=n(20),a=i(r),o=n(340),s=i(o),l=n(4),c=i(l),d=n(3),u=i(d),h=a.default.FoldoutListItemView,f=h.extend({className:h.prototype.className+" job",id:function(){return["job",this.model.get("id")].join("-")},foldoutPanelClass:s.default.DatasetList,initialize:function(e){e.logger&&(this.logger=this.model.logger=e.logger),this.log(this+".initialize:",e),h.prototype.initialize.call(this,e),this.tool=e.tool||{},this.jobData=e.jobData||{},this.linkTarget=e.linkTarget||"_blank"},_swapNewRender:function(e){return h.prototype._swapNewRender.call(this,e),this.model.has("state")&&this.$el.addClass("state-"+this.model.get("state")),this.$el},_getFoldoutPanelOptions:function(){var t=h.prototype._getFoldoutPanelOptions.call(this);return e.extend(t,{collection:this.model.outputCollection,selecting:!1})},_labelParamMap:function(){var t=this.model.get("params"),n={};return 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class="details"></div>',"</div>"]),c.default.wrapTemplate(['<div class="title-bar clear" tabindex="0">','<div class="title">','<span class="name"><%- view.tool.name %></span>',"</div>",'<div class="subtitle">','<span class="description"><%- view.tool.description %></span','<span class="create-time">'," ",(0,u.default)("Created"),": <%= new Date( job.create_time ).toString() %>, ","</span","</div>","</div>"],"job")),n=c.default.wrapTemplate(['<div class="subtitle">','<span class="description"><%- view.tool.description %></span',"</div>"],"job"),i=c.default.wrapTemplate(['<div class="details">','<div class="params">',"<% _.each( view._labelInputMap(), function( input, label ){ %>",'<div class="input" data-input-name="<%- input.name %>" data-input-id="<%- input.id %>">','<label class="prompt"><%- label %></label>','<span class="value"><%- input.content.name %></span>',"</div>","<% }) %>","<% _.each( view._labelParamMap(), function( param, label ){ %>",'<div class="param" data-input-name="<%- param.name %>">','<label class="prompt"><%- label %></label>','<span class="value"><%- param %></span>',"</div>","<% }) %>","</div>","</div>"],"job");return e.extend({},h.prototype.templates,{titleBar:t,subtitle:n,details:i})}(),t.default={JobListItemView:f}}).call(t,n(1))},function(e,t,n){"use strict";function i(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var r=n(38),a=i(r),o=n(17),s=i(o),l=n(4),c=(i(l),n(3)),d=i(c),u=a.default.ListPanel,h=u.extend({_logNamespace:"dataset",viewClass:s.default.DatasetListItemView,className:u.prototype.className+" dataset-list",noneFoundMsg:(0,d.default)("No matching datasets found"),initialize:function(e){u.prototype.initialize.call(this,e)},toString:function(){return"DatasetList("+this.collection+")"}});t.default={DatasetList:h}},function(e,t,n){"use strict";(function(e,i,r){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=n(3),s=a(o),l=n(29),c=a(l),d=n(71),u=a(d),h=n(70),f=a(h),p=n(55),g=a(p),m=n(36),_=a(m),v=n(4),y=a(v),b=n(31),w=a(b);n(342),n(39);var x=e.View.extend(y.default.LoggableMixin).extend({_logNamespace:"history",tagName:"div",className:"history-column flex-column flex-row-container",id:function(){return this.model?"history-column-"+this.model.get("id"):""},initialize:function(e){e=e||{},this.purgeAllowed=!i.isUndefined(e.purgeAllowed)&&e.purgeAllowed,this.panel=e.panel||this.createPanel(e),this.setUpListeners()},createPanel:function(e){return new u.default.HistoryViewEdit(i.defaults(e,{model:this.model,purgeAllowed:this.purgeAllowed,dragItems:!0,$scrollContainer:function(){return this.$el}}))},setUpListeners:function(){var e=this;this.once("rendered",function(){e.trigger("rendered:initial",e)}),this.setUpPanelListeners()},setUpPanelListeners:function(){var e=this;this.listenTo(this.panel,{rendered:function(){e.trigger("rendered",e)},"view:expanded 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class="delete-history">',(0,s.default)("Delete"),"</a></li>","<% } else /* if is deleted */ { %>",'<li><a href="javascript:void(0);" class="undelete-history">',(0,s.default)("Undelete"),"</a></li>","<% } %>","<% if( data.view.purgeAllowed ){ %>",'<li><a href="javascript:void(0);" class="purge-history">',(0,s.default)("Purge"),"</a></li>","<% } %>","</ul>","</div>","<% } %>","</div>"].join(""),{variable:"data"}),toString:function(){return"HistoryViewColumn("+(this.panel?this.panel:"")+")"}}),k=e.View.extend(y.default.LoggableMixin).extend({_logNamespace:"history",className:"multi-panel-history",initialize:function(e){e=e||{},this.log(this+".init",e),this.$el.addClass(this.className),this.options={columnWidth:312,borderWidth:1,columnGap:8,headerHeight:29,footerHeight:0,controlsHeight:20},this.perPage=e.perPage||10,this.hdaQueue=new w.default.NamedAjaxQueue([],!1),this.collection=null,this.columnMap={},this.columnOptions=e.columnOptions||{},this.historySearch=null,this.datasetSearch=null,this.setCollection(e.histories),this.setUpListeners()},setUpListeners:function(){var e=this;this.on("end-of-scroll",function(){e.collection.fetchMore()})},setCollection:function(e){return this.stopListening(this.collection),this.collection=e||new c.default.HistoryCollection,this.setUpCollectionListeners(),this.createColumns(),this.hdaQueue.clear(),this.trigger("new-collection",this),this},addModels:function(e,t,n){n=n||{};var r=this;return e=i.isArray(e)?e:[e],e.forEach(function(e){r.addColumn(e,!1)}),this},setUpCollectionListeners:function(){var e=this;e.listenTo(e.collection,{error:e.errorHandler,add:e.addModels,"all-fetched":e._postFetchAll,"new-current":e.addAsCurrentColumn,"set-as-current":e.setCurrentHistory,"change:deleted change:purged":e.handleDeletedHistory,sort:function(){e.renderColumns(0)}})},_postFetchAll:function(e){if(this.$(".histories-loading-indicator").remove(),!this.historySearch){var t=this.$(".outer-middle");t.scrollLeft(t.scrollLeft()+24)}},setCurrentHistory:function(e){this.log("setCurrentHistory:",e);var t=i.findWhere(this.columnMap,{currentHistory:!0});t&&(t.currentHistory=!1,t.$el.height(""));var n=this.columnMap[this.collection.currentHistoryId];return n.currentHistory=!0,this.collection.sort(),this._recalcFirstColumnHeight(),n},handleDeletedHistory:function(e){if(e.get("deleted")||e.get("purged")){this.log("handleDeletedHistory",this.collection.includeDeleted,e);var t=this,n=t.columnMap[e.id];if(!n)return;n.model.id===this.collection.currentHistoryId||t.collection.includeDeleted||t.removeColumn(n)}},errorHandler:function(e,t,n){if(!t||0!==t.status||0!==t.readyState){if(this.error(e,t,n),i.isString(e)&&i.isString(t)){var r=e,a=t;return _.default.errorModal(r,a,n)}return 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this.setCurrentHistory(e),r.once("rendered",function(){i.queueHdaFetch(r)}),r},removeColumn:function(e,t){if(t=void 0===t||t,this.log("removeColumn",e),e){var n=this,i=this.options.columnWidth+this.options.columnGap;e.$el.fadeOut("fast",function(){t&&(r(this).remove(),n.$(".middle").width(n.$(".middle").width()-i),n.checkColumnsInView(),n._recalcFirstColumnHeight()),n.stopListening(e.panel),n.stopListening(e),delete n.columnMap[e.model.id],e.remove()})}},setUpColumnListeners:function(e){var t=this;t.listenTo(e,{"in-view":t.queueHdaFetch}),t.listenTo(e.panel,{"view:draggable:dragstart":function(e,n,i,r){t._dropData=JSON.parse(e.dataTransfer.getData("text")),t.currentColumnDropTargetOn()},"view:draggable:dragend":function(e,n,i,r){t._dropData=null,t.currentColumnDropTargetOff()},"droptarget:drop":function(e,n,i){var r=t._dropData.filter(function(e){return i.model.contents.isCopyable(e)});t._dropData=null;var a=new w.default.NamedAjaxQueue;0!==i.model.contents.currentPage&&a.add({name:"fetch-front-page",fn:function(){return i.model.contents.fetchPage(0)}}),r.reverse().forEach(function(e){a.add({name:"copy-"+e.id,fn:function(){return i.model.contents.copy(e)}})}),a.start(),a.done(function(e){i.model.fetch()})}})},columnMapLength:function(){return Object.keys(this.columnMap).length},sortedFilteredColumns:function(e){return(e=e||this.filters)&&e.length?this.sortedColumns().filter(function(t,n){return t.currentHistory||i.every(e.map(function(e){return e.call(t)}))}):this.sortedColumns()},sortedColumns:function(){var e=this;return this.collection.map(function(t,n){return e.columnMap[t.id]})},render:function(e){e=void 0!==e?e:this.fxSpeed;var t=this;return t.log(t+".render"),t.$el.html(t.mainTemplate(t)),t.renderColumns(e),t.setUpBehaviors(),t.trigger("rendered",t),t},renderColumns:function(e){e=i.isNumber(e)?e:this.fxSpeed;var t=this,n=t.sortedFilteredColumns(),r=t.$(".middle").empty();return t._addColumns(n,e),t.collection.allFetched||r.append(t.loadingIndicatorTemplate(t)),t.trigger("columns-rendered",n,t),t.datasetSearch&&n.length<=1||(t.checkColumnsInView(),t._recalcFirstColumnHeight()),n},_addColumns:function(e,t){t=i.isNumber(t)?t:this.fxSpeed;var n=this.$(".middle"),r=n.children(".history-column").length;n.width(this._calcMiddleWidth(e.length+r)),e.forEach(function(e,i){e.delegateEvents().render(t).$el.appendTo(n)})},_calcMiddleWidth:function(e){return e*(this.options.columnWidth+this.options.columnGap)+this.options.columnGap+16},queueHdaFetch:function(e){var t=e.model.contents;if(0===t.length&&e.model.contentsShown()){var n={silent:!0},r=i.values(t.storage.allExpanded()).join();r&&(n.details=r),this.hdaQueue.add({name:e.model.id,fn:function(){return t.fetchCurrentPage(n).done(function(){e.panel.renderItems()}).done(function(){f.default.FETCH_STATE_ON_ADD||t.jobStateSummariesCollection.fetch()})}}),this.hdaQueue.running||this.hdaQueue.start()}},queueHdaFetchDetails:function(e){var t=e.model.contents;!(0===t.length&&e.model.contentsShown())&&t.haveDetails()||(this.hdaQueue.add({name:e.model.id,fn:function(){return t.progressivelyFetchDetails().done(function(){e.panel._renderEmptyMessage()})}}),this.hdaQueue.running||this.hdaQueue.start())},renderInfo:function(e){return this.$(".header .header-info").text(e)},events:{"click .done.btn":"close","click .create-new.btn":"create","click #include-deleted":"_clickToggleDeletedHistories","click .order .set-order":"_chooseOrder","click #toggle-deleted":"_clickToggleDeletedDatasets","click #toggle-hidden":"_clickToggleHiddenDatasets"},close:function(e){window.location=Galaxy.root},_clickToggleDeletedHistories:function(e){this.toggleDeletedHistories(r(e.currentTarget).is(":checked")),this.toggleOptionsPopover()},toggleDeletedHistories:function(e){window.location=e?Galaxy.root+"history/view_multiple?include_deleted_histories=True":Galaxy.root+"history/view_multiple"},_clickToggleDeletedDatasets:function(e){this.toggleDeletedDatasets(r(e.currentTarget).is(":checked")),this.toggleOptionsPopover()},toggleDeletedDatasets:function(e){e=void 0!==e&&e,this.sortedFilteredColumns().forEach(function(t,n){i.delay(function(){t.panel.toggleShowDeleted(e,!1)},200*n)})},_clickToggleHiddenDatasets:function(e){this.toggleHiddenDatasets(r(e.currentTarget).is(":checked")),this.toggleOptionsPopover()},toggleHiddenDatasets:function(e){e=void 0!==e&&e,this.sortedFilteredColumns().forEach(function(t,n){i.delay(function(){t.panel.toggleShowHidden(e,!1)},200*n)})},_chooseOrder:function(e){var t=this,n=t.collection,i=r(e.currentTarget).data("order");t.$(".current-order").text(t.orderDescriptions[i]),t.toggleOptionsPopover(),n.setOrder(i);var a=n.slice(0,1);n.fetchFirst().done(function(){n.unshift(a,{silent:!0}),t.createColumns(),t.hdaQueue.clear(),t.render()}),t.once("columns-rendered",t._scrollLeft)},_scrollLeft:function(e){e=i.isNumber(e)?e:0,this.$(".outer-middle").scrollLeft(e)},setUpBehaviors:function(){var e=this;e._moreOptionsPopover(),e.$("#search-histories").searchInput({name:"search-histories",placeholder:(0,s.default)("search histories"),onfirstsearch:function(t){e.$("#search-histories").searchInput("toggle-loading"),e.renderInfo((0,s.default)("loading all histories for search")),e.collection.fetchAll().done(function(){e.$("#search-histories").searchInput("toggle-loading"),e.renderInfo("")})},onsearch:function(t){e.historySearch=t,e.filters=[function(){return this.model.matchesAll(e.historySearch)}],e.renderColumns(0)},onclear:function(t){e.historySearch=null,e.filters=[],e.renderColumns(0)}}),e.$("#search-datasets").searchInput({name:"search-datasets",placeholder:(0,s.default)("search all datasets"),onfirstsearch:function(t){e.hdaQueue.clear(),e.$("#search-datasets").searchInput("toggle-loading"),e.datasetSearch=t,e.sortedFilteredColumns().forEach(function(n){n.panel.searchItems(t),e.queueHdaFetchDetails(n)}),e.hdaQueue.progress(function(t){e.renderInfo([(0,s.default)("searching"),t.curr+1,(0,s.default)("of"),t.total].join(" "))}),e.hdaQueue.deferred.done(function(){e.renderInfo(""),e.$("#search-datasets").searchInput("toggle-loading")})},onsearch:function(t){e.datasetSearch=t,e.sortedFilteredColumns().forEach(function(e){e.panel.searchItems(t)})},onclear:function(t){e.datasetSearch=null,e.sortedFilteredColumns().forEach(function(e){e.panel.clearSearch()})}}),r(window).resize(function(){e._recalcFirstColumnHeight()});var t=i.debounce(function(){var t=e._viewport();e.checkColumnsInView(t),e.checkForEndOfScroll(t)},100);this.$(".middle").parent().scroll(t)},_moreOptionsPopover:function(){return this.$(".open-more-options.btn").popover({container:".header",placement:"bottom",html:!0,content:r(this.optionsPopoverTemplate(this))})},toggleOptionsPopover:function(e){this.$(".open-more-options.btn").popover("toggle")},_recalcFirstColumnHeight:function(){var e=this.$(".history-column").first(),t=this.$(".middle").height(),n=e.find(".panel-controls").height();e.height(t).find(".inner").height(t-n)},_viewport:function(){var e=this.$(".middle").parent(),t=e.offset().left;return{left:t,right:t+e.width()}},columnsInView:function(e){var t=e||this._viewport();return this.sortedFilteredColumns().filter(function(e){return e.currentHistory||e.inView(t.left,t.right)})},checkColumnsInView:function(){this.columnsInView().forEach(function(e){e.trigger("in-view",e)})},checkForEndOfScroll:function(e){e=e||this._viewport();var t=this.$(".middle");t.parent().scrollLeft()+e.right>=t.width()-16&&this.trigger("end-of-scroll")},currentColumnDropTargetOn:function(){var e=this.columnMap[this.collection.currentHistoryId];e&&(e.panel.dataDropped=function(e){},e.panel.dropTargetOn())},currentColumnDropTargetOff:function(){var e=this.columnMap[this.collection.currentHistoryId];e&&(e.panel.dataDropped=u.default.HistoryViewEdit.prototype.dataDrop,e.panel.dropTarget=!1,e.panel.$(".history-drop-target").remove())},toString:function(){return"MultiPanelColumns("+(this.columns?this.columns.length:0)+")"},mainTemplate:i.template(['<div class="header flex-column-container">','<div class="control-column control-column-left flex-column">','<button class="done btn btn-default" tabindex="1">',(0,s.default)("Done"),"</button>",'<div id="search-histories" class="search-control"></div>','<div id="search-datasets" class="search-control"></div>','<a class="open-more-options btn btn-default" tabindex="3">','<span class="fa fa-ellipsis-h"></span>',"</a>","</div>",'<div class="control-column control-column-center flex-column">','<div class="header-info">',"</div>","</div>",'<div class="control-column control-column-right flex-column">','<button class="create-new btn btn-default" tabindex="4">',(0,s.default)("Create new"),"</button> ","</div>","</div>",'<div class="outer-middle flex-row flex-row-container">','<div class="middle flex-column-container flex-row"></div>',"</div>",'<div class="footer flex-column-container"></div>'].join(""),{variable:"view"}),loadingIndicatorTemplate:i.template(['<div class="histories-loading-indicator">','<span class="fa fa-spin fa-spinner"></span>',(0,s.default)("Loading histories"),"...","</div>"].join(""),{variable:"view"}),orderDescriptions:{update_time:(0,s.default)("most recent first"),"update_time-asc":(0,s.default)("least recent first"),name:(0,s.default)("name, a to z"),"name-dsc":(0,s.default)("name, z to a"),size:(0,s.default)("size, large to 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" checked" : "" %>>',(0,s.default)("Include deleted histories"),"</label></div>","<hr />",'<div class="checkbox"><label><input id="toggle-deleted" type="checkbox">',(0,s.default)("Include deleted datasets"),"</label></div>",'<div class="checkbox"><label><input id="toggle-hidden" type="checkbox">',(0,s.default)("Include hidden datasets"),"</label></div>","</div>"].join(""),{variable:"view"})});t.default={MultiPanelColumns:k}}).call(t,n(2),n(1),n(0))},function(e,t,n){"use strict";function i(e,t){return this.currModeIndex=0,this._init(e,t)}var r=n(0),a=function(e){return e&&e.__esModule?e:{default:e}}(r),o=a.default;i.prototype.DATA_KEY="mode-button",i.prototype.defaults={switchModesOnClick:!0},i.prototype._init=function(e,t){if(t=t||{},this.$element=o(e),this.options=o.extend(!0,{},this.defaults,t),!t.modes)throw new Error('ModeButton requires a "modes" array');var n=this;return 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e?this.options.modes[this._getModeIndex(e)]:this.currentMode()},i.prototype.hasMode=function(e){try{return!!this.getMode(e)}catch(e){}return!1},i.prototype.setMode=function(e){return this._setModeByIndex(this._getModeIndex(e))},i.prototype.reset=function(){return this.currModeIndex=0,this.options.initialMode&&(this.currModeIndex=this._getModeIndex(this.options.initialMode)),this._setModeByIndex(this.currModeIndex)},i.prototype.callModeFn=function(e){var t=this.getMode(e).onclick;if(t&&o.type("function"===t))return t.call(this.$element.get(0))},o.fn.modeButton=function(e){if(!this.length)return this;if("object"===o.type(e))return this.map(function(){var t=o(this);return t.data("mode-button",new i(t,e)),this});var t=o(this[0]),n=t.data("mode-button");if(!n)throw new Error("modeButton needs an options object or string name of a function");if(n&&"string"===o.type(e)){var r=e;if(n&&"function"===o.type(n[r]))return n[r].apply(n,o.makeArray(arguments).slice(1))}return n}},function(e,t,n){"use 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class="contents-container"/>').append([t.render(0).$el,e('<div class="additional-info"/>').text(t.model.get("annotation")||"")])},events:i.extend(i.clone(h.prototype.events),{"click .contents-container":function(t){t.stopPropagation(),e(t.currentTarget).find(".list-item .title-bar").click()},"click .icon-btn":function(t){t.stopPropagation();var n=e(t.currentTarget);n.length&&"dropdown"===n.attr("data-toggle")&&n.dropdown("toggle")}}),_clickSectionLink:function(t){var n=e(t.currentTarget).parent().parent().data("section");this.openSection(n)},toString:function(){return"AnnotatedHistoryView("+(this.model?this.model.get("name"):"")+")"}});t.default={AnnotatedHistoryView:f}}).call(t,n(0),n(1))},function(e,t,n){"use strict";(function(e,i,r,a){function o(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=n(5),l=o(s),c=n(345),d=o(c),u=n(346),h=o(u),f=n(47),p=o(f);e.ajaxSettings.traditional=!0,t.default=i.View.extend({grid:null,initialize:function(e){this.grid=new d.default,this.dict_format=e.dict_format,this.title=e.title;var t=this;if(window.add_tag_to_grid_filter=function(e,n){var i=e+(void 0!==n&&""!==n?":"+n:"");r("#advanced-search").is(":visible")||(r("#standard-search").slideToggle("fast"),r("#advanced-search").slideToggle("fast")),t.add_filter_condition("tags",i)},this.dict_format)if(this.setElement("<div/>"),e.url_base&&!e.items){var n=e.url_data||{};a.each(e.filters,function(e,t){n["f-"+t]=e}),r.ajax({url:e.url_base+"?"+r.param(n),success:function(n){n.embedded=e.embedded,n.filters=e.filters||{},t.init_grid(n)}})}else this.init_grid(e);else this.setElement("#grid-container"),this.init_grid(e);e.use_panels&&r("#center").css({padding:"10px",overflow:"auto"})},handle_refresh:function(e){e&&r.inArray("history",e)>-1&&window.top.Galaxy&&window.top.Galaxy.currHistoryPanel&&window.top.Galaxy.currHistoryPanel.loadCurrentHistory()},init_grid:function(e){this.grid.set(e);var t=this.grid.attributes;this.allow_title_display&&t.title&&l.default.setWindowTitle(t.title),this.handle_refresh(t.refresh_frames);var n=this.grid.get("url_base");if(n=n.replace(/^.*\/\/[^\/]+/,""),this.grid.set("url_base",n),this.$el.html(h.default.grid(t)),this.$el.find("#grid-table-header").html(h.default.header(t)),this.$el.find("#grid-table-body").html(h.default.body(t)),this.$el.find("#grid-table-footer").html(h.default.footer(t)),t.message){this.$el.find("#grid-message").html(h.default.message(t));var i=this;t.use_hide_message&&setTimeout(function(){i.$el.find("#grid-message").html("")},5e3)}this.init_grid_elements(),this.init_grid_controls(),window.init_refresh_on_change&&window.init_refresh_on_change()},init_grid_controls:function(){var e=this;this.$el.find(".operation-button").each(function(){r(this).off(),r(this).click(function(){return e.submit_operation(this),!1})}),this.$el.find("input[type=text]").each(function(){r(this).off(),r(this).click(function(){r(this).select()}).keyup(function(){r(this).css("font-style","normal")})}),this.$el.find(".sort-link").each(function(){r(this).off(),r(this).click(function(){return e.set_sort_condition(r(this).attr("sort_key")),!1})}),this.$el.find(".text-filter-form").each(function(){r(this).off(),r(this).submit(function(){var t=r(this).attr("column_key"),n=r("#input-"+t+"-filter"),i=n.val();return n.val(""),e.add_filter_condition(t,i),!1})}),this.$el.find(".text-filter-val > a").each(function(){r(this).off(),r(this).click(function(){return 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e=this.grid.attributes,t=this;this.$el.find(".page-link > a").each(function(){r(this).click(function(){return t.set_page(r(this).attr("page_num")),!1})}),this.$el.find(".use-target").each(function(){r(this).click(function(){return t.execute({href:r(this).attr("href"),target:r(this).attr("target")}),!1})}),0!==e.items.length&&a.each(e.items,function(n,i){var r=t.$("#grid-"+n.encode_id+"-popup").off(),o=new p.default(r);a.each(e.operations,function(e){t._add_operation(o,e,n)})})},_add_operation:function(e,t,n){var i=this,a=n.operation_config[t.label];a.allowed&&t.allow_popup&&e.addItem({html:t.label,href:a.url_args,target:a.target,confirmation_text:t.confirm,func:function(e){e.preventDefault();var a=r(e.target).html();t.onclick?t.onclick(n.encode_id):i.execute(this.findItemByHtml(a))}})},add_filter_condition:function(e,t){if(""===t)return!1;this.grid.add_filter(e,t,!0);var n=r(h.default.filter_element(e,t)),i=this;n.click(function(){r(this).remove(),i.remove_filter_condition(e,t)}),this.$el.find("#"+e+"-filtering-criteria").append(n),this.go_page_one(),this.execute()},remove_filter_condition:function(e,t){this.grid.remove_filter(e,t),this.go_page_one(),this.execute()},set_sort_condition:function(e){var t=this.grid.get("sort_key"),n=e;-1!==t.indexOf(e)&&"-"!==t.substring(0,1)&&(n="-"+e),this.$el.find(".sort-arrow").remove();var i="-"==n.substring(0,1)?"&uarr;":"&darr;",a=r("<span>"+i+"</span>").addClass("sort-arrow");this.$el.find("#"+e+"-header").append(a),this.grid.set("sort_key",n),this.go_page_one(),this.execute()},set_categorical_filter:function(e,t){var n=this.grid.get("categorical_filters")[e],i=this.grid.get("filters")[e],a=this;this.$el.find("."+e+"-filter").each(function(){var o=r.trim(r(this).text()),s=n[o],l=s[e];if(l==t)r(this).empty(),r(this).addClass("current-filter"),r(this).append(o);else if(l==i){r(this).empty();var c=r('<a 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o=[];this.$el.find("input[name=id]:checked").each(function(){o.push(r(this).val())});var s={operation:n,id:o,confirmation_text:t};return"top"!=i.target&&"center"!=i.target||(s=a.extend(s,{href:i.href,target:i.target})),this.execute(s),!0},check_all_items:function(){var e=this.$(".grid-row-select-checkbox"),t=this.$("#check_all").prop("checked");a.each(e,function(e){r(e).prop("checked",t)}),this.init_grid_elements()},go_page_one:function(){var e=this.grid.get("cur_page");null!==e&&void 0!==e&&"all"!==e&&this.grid.set("cur_page",1)},execute:function(e){var t=null,n=null,i=null,a=null,o=null;if(e&&(n=e.href,i=e.operation,t=e.id,a=e.confirmation_text,o=e.target,void 0!==n&&-1!=n.indexOf("operation="))){var s=n.split("?");if(s.length>1)for(var l=s[1],c=l.split("&"),d=0;d<c.length;d++)-1!=c[d].indexOf("operation")?(i=c[d].split("=")[1],i=i.replace(/\+/g," ")):-1!=c[d].indexOf("id")&&(t=c[d].split("=")[1])}return i&&t?!(a&&""!==a&&"None"!=a&&"null"!=a&&!confirm(a))&&(i=i.toLowerCase(),this.grid.set({operation:i,item_ids:t}),"top"==o?window.top.location=n+"?"+r.param(this.grid.get_url_data()):"center"==o?r("#galaxy_main").attr("src",n+"?"+r.param(this.grid.get_url_data())):this.grid.can_async_op(i)||this.dict_format?this.update_grid():this.go_to(o,n),!1):n?(this.go_to(o,n),!1):(this.grid.get("async")||this.dict_format?this.update_grid():this.go_to(o,n),!1)},go_to:function(e,t){var n=this.grid.get("async");this.grid.set("async",!1);var i=this.$el.find("#advanced-search").is(":visible");switch(this.grid.set("advanced_search",i),t||(t=this.grid.get("url_base")+"?"+r.param(this.grid.get_url_data())),this.grid.set({operation:void 0,item_ids:void 0,async:n}),e){case"center":r("#galaxy_main").attr("src",t);break;case"top":window.top.location=t;break;default:window.location=t}},update_grid:function(){var e=this.grid.get("operation")?"POST":"GET";this.$el.find(".loading-elt-overlay").show();var t=this;r.ajax({type:e,url:t.grid.get("url_base"),data:t.grid.get_url_data(),error:function(){alert("Grid refresh failed")},success:function(e){var n=t.grid.get("embedded"),i=t.grid.get("insert"),a=t.$el.find("#advanced-search").is(":visible"),o=t.dict_format?e:r.parseJSON(e);o.embedded=n,o.insert=i,o.advanced_search=a,t.init_grid(o),t.$el.find(".loading-elt-overlay").hide()},complete:function(){t.grid.set({operation:void 0,item_ids:void 0})}})}})}).call(t,n(0),n(2),n(0),n(1))},function(e,t,n){"use strict";(function(e,n,i){Object.defineProperty(t,"__esModule",{value:!0}),t.default=e.Model.extend({defaults:{url_base:"",async:!1,async_ops:[],categorical_filters:[],filters:{},sort_key:null,show_item_checkboxes:!1,advanced_search:!1,cur_page:1,num_pages:1,operation:void 0,item_ids:void 0},can_async_op:function(e){return-1!==n.indexOf(this.attributes.async_ops,e)},add_filter:function(e,t,n){if(n){var i,r=this.attributes.filters[e];if(null===r||void 0===r)i=t;else if("string"==typeof 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e=this.active_node;this.clear_active_node(),this.activate_node(e)}},clear_active_node:function(){this.active_node&&(this.active_node.make_inactive(),this.active_node=null),document.activeElement.blur(),this.app.showAttributes()},activate_node:function(e){this.active_node!=e&&(this.check_changes_in_active_form(),this.clear_active_node(),this.app.showForm(e.config_form,e),e.make_active(),this.active_node=e)},node_changed:function(e,t){this.has_changes=!0,this.active_node==e&&t&&(this.check_changes_in_active_form(),this.app.showForm(e.config_form,e)),this.app.showWorkflowParameters()},layout:function(){this.check_changes_in_active_form(),this.has_changes=!0;var t={},n={};e.each(this.nodes,function(e,i){void 0===t[e]&&(t[e]=0),void 0===n[e]&&(n[e]=[])}),e.each(this.nodes,function(i,r){e.each(r.input_terminals,function(i,a){e.each(a.connectors,function(e,i){var a=i.handle1.node;t[r.id]+=1,n[a.id].push(r.id)})})});for(var i=[];;){var r=[];for(var a in t)0===t[a]&&r.push(a);if(0===r.length)break;i.push(r);for(var o in r){var s=r[o];delete t[s];for(var l in n[s])t[n[s][l]]-=1}}if(!t.length){var c=this.nodes,d=80;e.each(i,function(t,n){n.sort(function(t,n){return e(c[t].element).position().top-e(c[n].element).position().top});var i=0,r=30;e.each(n,function(t,n){var a=c[n],o=e(a.element);e(o).css({top:r,left:d}),i=Math.max(i,e(o).width()),r+=e(o).height()+30}),d+=i+80}),e.each(c,function(e,t){t.redraw()})}},bounds_for_all_nodes:function(){var t,n=1/0,i=-1/0,r=1/0,a=-1/0;return e.each(this.nodes,function(o,s){var l=e(s.element);t=l.position(),n=Math.min(n,t.left),i=Math.max(i,t.left+l.width()),r=Math.min(r,t.top),a=Math.max(a,t.top+l.width())}),{xmin:n,xmax:i,ymin:r,ymax:a}},fit_canvas_to_nodes:function(){function t(e,t){return Math.ceil(e/t)*t}function n(e,t){if(e<t||e>3*t){return-(e-(Math.ceil(e%t/t)+1)*t)}return 0}var i=this.bounds_for_all_nodes(),r=this.canvas_container.position(),a=this.canvas_container.parent(),o=n(i.xmin,100),s=n(i.ymin,100);o=Math.max(o,r.left),s=Math.max(s,r.top);var l=r.left-o,c=r.top-s,d=t(i.xmax+100,100)+o,u=t(i.ymax+100,100)+s;d=Math.max(d,-l+a.width()),u=Math.max(u,-c+a.height()),this.canvas_container.css({left:l,top:c,width:d,height:u}),this.canvas_container.children().each(function(){var t=e(this).position();e(this).css("left",t.left+o),e(this).css("top",t.top+s)})}}),t.default=i}).call(t,n(0))},function(e,t,n){"use strict";(function(e){function n(e,t,n){this.app=e,this.cv=t,this.cc=this.cv.find("#canvas-container"),this.overview=n,this.oc=n.find("#overview-canvas"),this.ov=n.find("#overview-viewport"),this.init_drag(),this.init_copy_paste()}function i(e){this.panel=e}Object.defineProperty(t,"__esModule",{value:!0}),e.extend(n.prototype,{init_drag:function(){var t=this,n=function(e,n){e=Math.min(e,t.cv.width()/2),e=Math.max(e,-t.cc.width()+t.cv.width()/2),n=Math.min(n,t.cv.height()/2),n=Math.max(n,-t.cc.height()+t.cv.height()/2),t.cc.css({left:e,top:n}),t.cv.css({"background-position-x":e,"background-position-y":n}),t.update_viewport_overlay()};this.cc.each(function(){this.scroll_panel=new i(this)});var r,a;this.cv.bind("click",function(){document.activeElement.blur()}).bind("dragstart",function(){var n=e(this).offset(),i=t.cc.position();a=i.top-n.top,r=i.left-n.left}).bind("drag",function(e,t){n(t.offsetX+r,t.offsetY+a)}).bind("dragend",function(){t.app.workflow.fit_canvas_to_nodes(),t.draw_overview()}),this.overview.click(function(e){if(t.overview.hasClass("blockaclick"))t.overview.removeClass("blockaclick");else{var i=t.cc.width(),r=t.cc.height(),a=t.oc.width(),o=t.oc.height(),s=e.pageX-t.oc.offset().left-t.ov.width()/2,l=e.pageY-t.oc.offset().top-t.ov.height()/2;n(-s/a*i,-l/o*r),t.app.workflow.fit_canvas_to_nodes(),t.draw_overview()}}),this.ov.bind("drag",function(e,i){var r=t.cc.width(),a=t.cc.height(),o=t.oc.width(),s=t.oc.height(),l=i.offsetX-t.overview.offset().left,c=i.offsetY-t.overview.offset().top;n(-l/o*r,-c/s*a)}).bind("dragend",function(){t.overview.addClass("blockaclick"),t.app.workflow.fit_canvas_to_nodes(),t.draw_overview()}),e("#overview-border").bind("drag",function(n,i){var r=e(this).offsetParent(),a=r.offset(),o=Math.max(r.width()-(i.offsetX-a.left),r.height()-(i.offsetY-a.top));e(this).css({width:o,height:o}),t.draw_overview()}),e("#overview-border div").bind("drag",function(){})},init_copy_paste:function(){var e=this;document.addEventListener("copy",function(t){""===window.getSelection().toString()&&(e.app.workflow.active_node&&"subworkflow"!==e.app.workflow.active_node.type&&t.clipboardData.setData("application/json",JSON.stringify({nodeId:e.app.workflow.active_node.id})),t.preventDefault())}),document.addEventListener("paste",function(t){if(document.activeElement&&"textarea"!==document.activeElement.type&&"text"!==document.activeElement.type){var n;try{n=JSON.parse(t.clipboardData.getData("application/json")).nodeId}catch(e){}n&&e.app.workflow.nodes.hasOwnProperty(n)&&e.app.workflow.nodes[n].clone(),t.preventDefault()}})},update_viewport_overlay:function(){var e=this.cc,t=this.cv,n=this.oc,i=this.ov,r=e.width(),a=e.height(),o=n.width(),s=n.height(),l=e.position();i.css({left:-l.left/r*o,top:-l.top/a*s,width:t.width()/r*o-2,height:t.height()/a*s-2})},draw_overview:function(){var t,n,i,r,a=e("#overview-canvas"),o=a.parent().parent().width(),s=a.get(0).getContext("2d"),l=e("#canvas-container").width(),c=e("#canvas-container").height(),d=this.cv.width(),u=this.cv.height();l<d&&c<u?(i=l/d*o,r=(o-i)/2,t=c/u*o,n=(o-t)/2):l<c?(n=0,t=o,i=Math.ceil(t*l/c),r=(o-i)/2):(i=o,r=0,t=Math.ceil(i*c/l),n=(o-t)/2),a.parent().css({left:r,top:n,width:i,height:t}),a.attr("width",i),a.attr("height",t),e.each(this.app.workflow.nodes,function(n,r){s.fillStyle="#D2C099",s.strokeStyle="#D8B365",s.lineWidth=1;var a=e(r.element),o=a.position(),d=o.left/l*i,u=o.top/c*t,h=a.width()/l*i,f=a.height()/c*t;r.errors?(s.fillStyle="#FFCCCC",s.strokeStyle="#AA6666"):void 0!==r.workflow_outputs&&r.workflow_outputs.length>0&&(s.fillStyle="#E8A92D",s.strokeStyle="#E8A92D"),s.fillRect(d,u,h,f),s.strokeRect(d,u,h,f)}),this.update_viewport_overlay()}}),e.extend(i.prototype,{test:function(t,n){var i=this;clearTimeout(this.timeout);var r=t.pageX,a=t.pageY,o=e(this.panel),s=o.position(),l=o.width(),c=o.height(),d=o.parent(),u=d.width(),h=d.height(),f=d.offset(),p=f.left,g=f.top,m=p+d.width(),_=g+d.height(),v=-(l-u/2),y=-(c-h/2),b=u/2,w=h/2,x=!1,k=0;r-5<p?s.left<b&&(k=Math.min(23,b-s.left),o.css("left",s.left+k),x=!0):r+5>m?s.left>v&&(k=Math.min(23,s.left-v),o.css("left",s.left-k),x=!0):a-5<g?s.top<w&&(k=Math.min(23,w-s.top),o.css("top",s.top+k),x=!0):a+5>_&&s.top>y&&(k=Math.min(23,s.top-v),o.css("top",s.top-k+"px"),x=!0),x&&(n(),this.timeout=setTimeout(function(){i.test(t,n)},50))},stop:function(){clearTimeout(this.timeout)}}),t.default=n}).call(t,n(0))},function(e,t,n){"use strict";(function(e,i,r){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=n(5),s=a(o),l=n(306),c=a(l),d=e.Model.extend({initialize:function(e,t){this.app=e,this.element=t.element,this.input_terminals={},this.output_terminals={},this.errors={},this.workflow_outputs=[]},getWorkflowOutput:function(e){return i.findWhere(this.workflow_outputs,{output_name:e})},isWorkflowOutput:function(e){return void 0!==this.getWorkflowOutput(e)},removeWorkflowOutput:function(e){for(;this.isWorkflowOutput(e);)this.workflow_outputs.splice(this.getWorkflowOutput(e),1)},addWorkflowOutput:function(e,t){if(!this.isWorkflowOutput(e)){var n={output_name:e};return t&&(n.label=t),this.workflow_outputs.push(n),!0}return!1},labelWorkflowOutput:function(e,t){var n=!1,i=null;if(this.isWorkflowOutput(e)){var r=this.getWorkflowOutput(e);i=r.label,r.label=t,n=i!=t}else n=this.addWorkflowOutput(e,t);return n&&(this.app.workflow.updateOutputLabel(i,t),this.markChanged(),this.nodeView.redrawWorkflowOutputs()),n},connectedOutputTerminals:function(){return this._connectedTerminals(this.output_terminals)},_connectedTerminals:function(e){var t=[];return r.each(e,function(e,n){n.connectors.length>0&&t.push(n)}),t},hasConnectedOutputTerminals:function(){var e=this.output_terminals;for(var t in e)if(e[t].connectors.length>0)return!0;return!1},connectedMappedInputTerminals:function(){return this._connectedMappedTerminals(this.input_terminals)},hasConnectedMappedInputTerminals:function(){var e=this.input_terminals;for(var t in e){var n=e[t];if(n.connectors.length>0&&n.isMappedOver())return!0}return!1},_connectedMappedTerminals:function(e){var t=[];return r.each(e,function(e,n){n.mapOver().isCollection&&n.connectors.length>0&&t.push(n)}),t},mappedInputTerminals:function(){return this._mappedTerminals(this.input_terminals)},_mappedTerminals:function(e){var t=[];return r.each(e,function(e,n){n.mapOver().isCollection&&t.push(n)}),t},hasMappedOverInputTerminals:function(){var e=!1;return i.each(this.input_terminals,function(t){t.mapOver().isCollection&&(e=!0)}),e},redraw:function(){r.each(this.input_terminals,function(e,t){t.redraw()}),r.each(this.output_terminals,function(e,t){t.redraw()})},clone:function(){var e=this,t={name:this.name,label:this.label,annotation:this.annotation,post_job_actions:this.post_job_actions},n=this.app.workflow.create_node(this.type,this.name,this.content_id);s.default.request({type:"POST",url:Galaxy.root+"api/workflows/build_module",data:{type:this.type,tool_id:this.content_id,inputs:this.tool_state},success:function(i){var r=Object.assign({},i,t);n.init_field_data(r),n.update_field_data(r),e.app.workflow.activate_node(n)}})},destroy:function(){r.each(this.input_terminals,function(e,t){t.destroy()}),r.each(this.output_terminals,function(e,t){t.destroy()}),this.app.workflow.remove_node(this),r(this.element).remove()},make_active:function(){r(this.element).addClass("toolForm-active")},make_inactive:function(){var e=this.element.get(0);!function(t){t.removeChild(e),t.appendChild(e)}(e.parentNode),r(e).removeClass("toolForm-active")},init_field_data:function(e){e.type&&(this.type=e.type),this.name=e.name,this.config_form=e.config_form,this.tool_version=this.config_form&&this.config_form.version,this.tool_state=e.tool_state,this.errors=e.errors,this.tooltip=e.tooltip?e.tooltip:"",this.annotation=e.annotation,this.post_job_actions=e.post_job_actions?e.post_job_actions:{},this.label=e.label,this.uuid=e.uuid,this.workflow_outputs=e.workflow_outputs?e.workflow_outputs:[];var t=this,n=new c.default({el:this.element[0],node:t});t.nodeView=n,r.each(e.data_inputs,function(e,t){n.addDataInput(t)}),e.data_inputs.length>0&&e.data_outputs.length>0&&n.addRule(),r.each(e.data_outputs,function(e,t){n.addDataOutput(t)}),n.render(),this.app.workflow.node_changed(this,!0)},update_field_data:function(e){var t=this,n=t.nodeView,a=[];if(r.each(n.outputViews,function(t,n){var r=n.output.name,o=e.data_outputs,s=!1;i.each(o,function(e){e.name==r&&(s=!0)}),!1===s&&a.push(r)}),i.each(a,function(e){i.each(n.outputViews[e].terminalElement.terminal.connectors,function(e){e&&e.destroy()}),n.outputViews[e].remove(),delete n.outputViews[e],delete t.output_terminals[e]}),r.each(t.workflow_outputs,function(e,n){n&&!t.output_terminals[n.output_name]&&t.workflow_outputs.splice(e,1)}),r.each(e.data_outputs,function(e,i){n.outputViews[i.name]?(t.output_terminals[i.name].datatypes=i.extensions,t.output_terminals[i.name].destroyInvalidConnections()):n.addDataOutput(i)}),this.tool_state=e.tool_state,this.config_form=e.config_form,this.tool_version=this.config_form&&this.config_form.version,this.errors=e.errors,this.annotation=e.annotation,this.label=e.label,"post_job_actions"in e){var o=e.post_job_actions;this.post_job_actions=o||{}}t.nodeView.renderToolErrors();var s=n.$("div.inputs"),l=n.newInputsDiv(),c={};i.each(e.data_inputs,function(e){var n=t.nodeView.addDataInput(e,l);c[e.name]=n}),i.each(i.difference(i.values(n.terminalViews),i.values(c)),function(e){e.el.terminal.destroy()}),n.terminalViews=c,t.nodeView.render(),1==e.data_outputs.length&&"collection_type"in e.data_outputs[0]&&n.updateDataOutput(e.data_outputs[0]),s.replaceWith(l),"workflow_outputs"in e&&(this.workflow_outputs=e.workflow_outputs?e.workflow_outputs:[]),this.markChanged(),this.redraw()},error:function(e){var t=r(this.element).find(".toolFormBody");t.find("div").remove();var n="<div style='color: red; text-style: italic;'>"+e+"</div>";this.config_form=n,t.html(n),this.app.workflow.node_changed(this)},markChanged:function(){this.app.workflow.node_changed(this)}});t.default=d}).call(t,n(2),n(1),n(0))},function(e,t,n){"use strict";(function(e,i){function r(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=n(1),o=function(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}(a),s=n(307),l=r(s),c=n(309),d=r(c);t.default=e.View.extend({initialize:function(e){this.node=e.node,this.output_width=Math.max(150,this.$el.width()),this.tool_body=this.$el.find(".toolFormBody"),this.tool_body.find("div").remove(),this.newInputsDiv().appendTo(this.tool_body),this.terminalViews={},this.outputViews={}},render:function(){this.renderToolLabel(),this.renderToolErrors(),this.$el.css("width",Math.min(250,Math.max(this.$el.width(),this.output_width)))},renderToolLabel:function(){this.$(".nodeTitle").text(this.node.label||this.node.name)},renderToolErrors:function(){this.node.errors?this.$el.addClass("tool-node-error"):this.$el.removeClass("tool-node-error")},newInputsDiv:function(){return i("<div/>").addClass("inputs")},updateMaxWidth:function(e){this.output_width=Math.max(this.output_width,e)},addRule:function(){this.tool_body.append(i("<div/>").addClass("rule"))},addDataInput:function(e,t){var n=!0;t||(t=this.$(".inputs"),n=!1);var i=this.terminalViews[e.name],r="dataset_collection"==e.input_type?l.default.InputCollectionTerminalView:l.default.InputTerminalView;if(!i||i instanceof r||(i.el.terminal.destroy(),i=null),i){var a=i.el.terminal;a.update(e),a.destroyInvalidConnections()}else i=new r({node:this.node,input:e});this.terminalViews[e.name]=i;var o=i.el,s=new d.default.DataInputView({terminalElement:o,input:e,nodeView:this,skipResize:n}),c=s.$el;return t.append(c.prepend(i.terminalElements())),i},addDataOutput:function(e){var t=e.collection?l.default.OutputCollectionTerminalView:l.default.OutputTerminalView,n=new t({node:this.node,output:e}),i=new d.default.DataOutputView({output:e,terminalElement:n.el,nodeView:this});this.outputViews[e.name]=i,this.tool_body.append(i.$el.append(n.terminalElements()))},redrawWorkflowOutputs:function(){o.each(this.outputViews,function(e){e.redrawWorkflowOutput()})},updateDataOutput:function(e){this.node.output_terminals[e.name].update(e)}})}).call(t,n(2),n(0))},function(e,t,n){"use strict";(function(e,i,r){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=n(308),s=a(o),l=n(137),c=a(l);window.workflow_globals=window.workflow_globals||{};var d=e.View.extend({tagName:"div",className:"fa-icon-button fa fa-folder-o",initialize:function(e){this.$el.tooltip({delay:500,title:"Run tool in parallel over collection"}),this.model.bind("change",i.bind(this.render,this))},render:function(){this.model.mapOver.isCollection?this.$el.show():this.$el.hide()}}),u=d.extend({events:{click:"onClick",mouseenter:"onMouseEnter",mouseleave:"onMouseLeave"},onMouseEnter:function(e){var t=this.model;!t.terminal.connected()&&t.mapOver.isCollection&&this.$el.css("color","red")},onMouseLeave:function(e){this.$el.css("color","black")},onClick:function(e){var t=this.model;!t.terminal.connected()&&t.mapOver.isCollection&&t.terminal.resetMapping()}}),h=e.View.extend({setupMappingView:function(e){var t=new this.terminalMappingClass({terminal:e}),n=new this.terminalMappingViewClass({model:t});n.render(),e.terminalMappingView=n,this.terminalMappingView=n},terminalElements:function(){return this.terminalMappingView?[this.terminalMappingView.el,this.el]:[this.el]}}),f=h.extend({className:"terminal input-terminal",initialize:function(e){var t=e.node,n=e.input,i=n.name,r=this.terminalForInput(n);r.multiple||this.setupMappingView(r),this.el.terminal=r,r.node=t,r.name=i,t.input_terminals[i]=r},events:{dropinit:"onDropInit",dropstart:"onDropStart",dropend:"onDropEnd",drop:"onDrop",hover:"onHover"},onDropInit:function(e,t){var n=this.el.terminal;return r(t.drag).hasClass("output-terminal")&&n.canAccept(t.drag.terminal)},onDropStart:function(e,t){t.proxy.terminal&&(t.proxy.terminal.connectors[0].inner_color="#BBFFBB")},onDropEnd:function(e,t){t.proxy.terminal&&(t.proxy.terminal.connectors[0].inner_color="#FFFFFF")},onDrop:function(e,t){var n=this.el.terminal;new c.default(t.drag.terminal,n).redraw()},onHover:function(){var e=this.el,t=e.terminal;if(t.connectors.length>0){var n=r("<div class='callout'></div>").css({display:"none"}).appendTo("body").append(r("<div class='button'></div>").append(r("<div/>").addClass("fa-icon-button fa fa-times").click(function(){r.each(t.connectors,function(e,t){t&&t.destroy()}),n.remove()}))).bind("mouseleave",function(){r(this).remove()});n.css({top:r(e).offset().top-2,left:r(e).offset().left-n.width(),"padding-right":r(e).width()}).show()}}}),p=f.extend({terminalMappingClass:s.default.TerminalMapping,terminalMappingViewClass:u,terminalForInput:function(e){return new s.default.InputTerminal({element:this.el,input:e})}}),g=f.extend({terminalMappingClass:s.default.TerminalMapping,terminalMappingViewClass:u,terminalForInput:function(e){return new s.default.InputCollectionTerminal({element:this.el,input:e})}}),m=h.extend({className:"terminal output-terminal",initialize:function(e){var t=e.node,n=e.output,i=n.name,r=this.terminalForOutput(n);this.setupMappingView(r),this.el.terminal=r,r.node=t,r.name=i,t.output_terminals[i]=r},events:{drag:"onDrag",dragstart:"onDragStart",dragend:"onDragEnd"},onDrag:function(e,t){var n=function(){var e=r(t.proxy).offsetParent().offset(),n=t.offsetX-e.left,i=t.offsetY-e.top;r(t.proxy).css({left:n,top:i}),t.proxy.terminal.redraw(),window.workflow_globals.canvas_manager.update_viewport_overlay()};n(),r("#canvas-container").get(0).scroll_panel.test(e,n)},onDragStart:function(e,t){r(t.available).addClass("input-terminal-active"),window.workflow_globals.workflow.check_changes_in_active_form();var n=r('<div class="drag-terminal" style="position: absolute;"></div>').appendTo("#canvas-container").get(0);n.terminal=new s.default.OutputTerminal({element:n});var i=new c.default;return i.dragging=!0,i.connect(this.el.terminal,n.terminal),n},onDragEnd:function(e,t){var n=t.proxy.terminal.connectors[0];n&&n.destroy(),r(t.proxy).remove(),r(t.available).removeClass("input-terminal-active"),r("#canvas-container").get(0).scroll_panel.stop()}}),_=m.extend({terminalMappingClass:s.default.TerminalMapping,terminalMappingViewClass:d,terminalForOutput:function(e){var t=e.extensions;return new s.default.OutputTerminal({element:this.el,datatypes:t})}}),v=m.extend({terminalMappingClass:s.default.TerminalMapping,terminalMappingViewClass:d,terminalForOutput:function(e){var t=e.collection_type,n=e.collection_type_source;return new s.default.OutputCollectionTerminal({element:this.el,collection_type:t,collection_type_source:n,datatypes:e.extensions})}});t.default={InputTerminalView:p,OutputTerminalView:_,InputCollectionTerminalView:g,OutputCollectionTerminalView:v}}).call(t,n(2),n(1),n(0))},function(e,t,n){"use strict";(function(e,n,i){function r(e){this.collectionType=e,this.isCollection=!0,this.rank=e.split(":").length}Object.defineProperty(t,"__esModule",{value:!0}),window.workflow_globals=window.workflow_globals||{};var a={isCollection:!1,canMatch:function(){return!1},canMapOver:function(){return!1},toString:function(){return"NullCollectionType[]"},append:function(e){return e},equal:function(e){return e===this}},o={isCollection:!0,canMatch:function(e){return a!==e},canMapOver:function(){return!1},toString:function(){return"AnyCollectionType[]"},append:function(){throw"Cannot append to ANY_COLLECTION_TYPE_DESCRIPTION"},equal:function(e){return e===this}};e.extend(r.prototype,{append:function(e){return e===a?this:e===o?e:new r(this.collectionType+":"+e.collectionType)},canMatch:function(e){return e!==a&&(e===o||e.collectionType==this.collectionType)},canMapOver:function(e){if(e===a)return!1;if(e===o)return!1;if(this.rank<=e.rank)return!1;var t=e.collectionType;return this._endsWith(this.collectionType,t)},effectiveMapOver:function(e){var t=e.collectionType;return new r(this.collectionType.substring(0,this.collectionType.length-t.length-1))},equal:function(e){return e.collectionType==this.collectionType},toString:function(){return"CollectionType["+this.collectionType+"]"},_endsWith:function(e,t){return-1!==e.indexOf(t,e.length-t.length)}});var s=n.Model.extend({initialize:function(e){this.mapOver=e.mapOver||a,this.terminal=e.terminal,this.terminal.terminalMapping=this},disableMapOver:function(){this.setMapOver(a)},setMapOver:function(e){this.mapOver=e,this.trigger("change")}}),l=n.Model.extend({initialize:function(e){this.element=e.element,this.connectors=[]},connect:function(e){this.connectors.push(e),this.node&&this.node.markChanged()},disconnect:function(t){this.connectors.splice(e.inArray(t,this.connectors),1),this.node&&(this.node.markChanged(),this.resetMappingIfNeeded())},redraw:function(){e.each(this.connectors,function(e,t){t.redraw()})},destroy:function(){e.each(this.connectors.slice(),function(e,t){t.destroy()})},destroyInvalidConnections:function(){i.each(this.connectors,function(e){e&&e.destroyIfInvalid()})},setMapOver:function(e){this.multiple||this.mapOver().equal(e)||(this.terminalMapping.setMapOver(e),i.each(this.node.output_terminals,function(t){t.setMapOver(e)}))},mapOver:function(){return this.terminalMapping?this.terminalMapping.mapOver:a},isMappedOver:function(){return this.terminalMapping&&this.terminalMapping.mapOver.isCollection},resetMapping:function(){this.terminalMapping.disableMapOver()},resetMappingIfNeeded:function(){}}),c=l.extend({initialize:function(e){l.prototype.initialize.call(this,e),this.datatypes=e.datatypes},resetMappingIfNeeded:function(){this.node.hasConnectedOutputTerminals()||this.node.hasConnectedMappedInputTerminals()||i.each(this.node.mappedInputTerminals(),function(e){e.resetMappingIfNeeded()}),!this.node.hasMappedOverInputTerminals()&&this.resetMapping()},resetMapping:function(){this.terminalMapping.disableMapOver(),i.each(this.connectors,function(e){var t=e.handle2;t&&(t.resetMappingIfNeeded(),e.destroyIfInvalid())})}}),d=l.extend({initialize:function(e){l.prototype.initialize.call(this,e),this.update(e.input)},canAccept:function(e){return!this._inputFilled()&&this.attachable(e)},resetMappingIfNeeded:function(){this.mapOver().isCollection&&((this.node.hasConnectedMappedInputTerminals()||!this.node.hasConnectedOutputTerminals())&&this.resetMapping())},resetMapping:function(){this.terminalMapping.disableMapOver(),this.node.hasMappedOverInputTerminals()||i.each(this.node.output_terminals,function(e){e.resetMapping()})},connected:function(){return 0!==this.connectors.length},_inputFilled:function(){return!!this.connected()&&(!this.multiple||!!this._collectionAttached())},_collectionAttached:function(){if(this.connected()){var e=this.connectors[0].handle1;return!!e&&!!(e.isCollection||e.isMappedOver()||e.datatypes.indexOf("input_collection")>0)}return!1},_mappingConstraints:function(){if(!this.node)return[];var e=this.mapOver();if(e.isCollection)return[e];var t=[];return this.node.hasConnectedOutputTerminals()?t.push(i.first(i.values(this.node.output_terminals)).mapOver()):i.each(this.node.connectedMappedInputTerminals(),function(e){t.push(e.mapOver())}),t},_producesAcceptableDatatype:function(e){for(var t in this.datatypes){var n=this.datatypes[t];if("input"==n)return!0;var i=[];if(i=i.concat(e.datatypes),e.node.post_job_actions)for(var r in e.node.post_job_actions){var a=e.node.post_job_actions[r];"ChangeDatatypeAction"!=a.action_type||""!==a.output_name&&a.output_name!=e.name||!a.action_arguments||i.push(a.action_arguments.newtype)}for(var o in i){var s=i[o];if("input"==s||"_sniff_"==s||"input_collection"==s||window.workflow_globals.app.isSubType(i[o],n))return!0}}return!1},_otherCollectionType:function(e){var t=a;e.isCollection&&(t=e.collectionType);var n=e.mapOver();return n.isCollection&&(t=n.append(t)),t}}),u=d.extend({update:function(e){this.datatypes=e.extensions,this.multiple=e.multiple,this.collection=!1},connect:function(e){d.prototype.connect.call(this,e);var t=e.handle1;if(t){var n=this._otherCollectionType(t);n.isCollection&&this.setMapOver(n)}},attachable:function(e){var t=this._otherCollectionType(e),n=this.mapOver();if(t.isCollection){if(this.multiple)return!(this.connected()&&!this._collectionAttached())&&(1==t.rank&&this._producesAcceptableDatatype(e));if(n.isCollection&&n.canMatch(t))return this._producesAcceptableDatatype(e);return!!this._mappingConstraints().every(i.bind(t.canMatch,t))&&this._producesAcceptableDatatype(e)}return!n.isCollection&&this._producesAcceptableDatatype(e)}}),h=d.extend({update:function(e){this.multiple=!1,this.collection=!0,this.datatypes=e.extensions;var t=[];e.collection_types?i.each(e.collection_types,function(e){t.push(new r(e))}):t.push(o),this.collectionTypes=t},connect:function(e){d.prototype.connect.call(this,e);var t=e.handle1;if(t){var n=this._effectiveMapOver(t);this.setMapOver(n)}},_effectiveMapOver:function(e){var t=this.collectionTypes,n=this._otherCollectionType(e);if(!i.some(t,function(e){return e.canMatch(n)}))for(var r in t){var o=t[r];if(n.canMapOver(o)){var s=n.effectiveMapOver(o);if(s!=a)return s}}return a},_effectiveCollectionTypes:function(){var e=this.mapOver();return i.map(this.collectionTypes,function(t){return e.append(t)})},attachable:function(e){var t=this._otherCollectionType(e);if(t.isCollection){var n=this._effectiveCollectionTypes(),r=this.mapOver();if(i.some(n,function(e){return e.canMatch(t)}))return this._producesAcceptableDatatype(e);if(r.isCollection)return!1;if(i.some(this.collectionTypes,function(e){return t.canMapOver(e)})){var a=this._effectiveMapOver(e);if(!a.isCollection)return!1;if(this._mappingConstraints().every(a.canMatch))return this._producesAcceptableDatatype(e)}}return!1}}),f=l.extend({initialize:function(e){if(l.prototype.initialize.call(this,e),this.datatypes=e.datatypes,e.collection_type)this.collectionType=new r(e.collection_type);else{e.collection_type_source||console.log("Warning: No collection type or collection type source defined."),this.collectionType=o}this.isCollection=!0},update:function(e){var t;if(e.collection_type)t=new r(e.collection_type);else{e.collection_type_source||console.log("Warning: No collection type or collection type source defined."),t=o}t.collectionType!=this.collectionType.collectionType&&i.each(this.connectors,function(e){e.destroy()}),this.collectionType=t}});t.default={InputTerminal:u,OutputTerminal:c,InputCollectionTerminal:h,OutputCollectionTerminal:f,TerminalMapping:s,CollectionTypeDescription:r,NULL_COLLECTION_TYPE_DESCRIPTION:a,ANY_COLLECTION_TYPE_DESCRIPTION:o}}).call(t,n(0),n(2),n(1))},function(e,t,n){"use strict";(function(e,n){Object.defineProperty(t,"__esModule",{value:!0}),window.workflow_globals=window.workflow_globals||{};var i=e.View.extend({className:"form-row dataRow input-data-row",initialize:function(e){this.input=e.input,this.nodeView=e.nodeView,this.terminalElement=e.terminalElement,this.$el.attr("name",this.input.name).html(this.input.label),e.skipResize||(this.$el.css({position:"absolute",left:-1e3,top:-1e3,display:"none"}),n("body").append(this.el),this.nodeView.updateMaxWidth(this.$el.outerWidth()),this.$el.css({position:"",left:"",top:"",display:""}),this.$el.remove())}}),r=e.View.extend({className:"form-row dataRow",initialize:function(e){this.output=e.output,this.terminalElement=e.terminalElement,this.nodeView=e.nodeView;var t=this.output,i=t.name,r=this.nodeView.node;if(t.extensions.indexOf("input")>=0||t.extensions.indexOf("input_collection")>=0||(i=i+" ("+t.extensions.join(", ")+")"),this.$el.html(i),this.calloutView=null,["tool","subworkflow"].indexOf(r.type)>=0){var o=new a({label:i,output:t,node:r});this.calloutView=o,this.$el.append(o.el),this.$el.hover(function(){o.hoverImage()},function(){o.resetImage()})}this.$el.css({position:"absolute",left:-1e3,top:-1e3,display:"none"}),n("body").append(this.el),this.nodeView.updateMaxWidth(this.$el.outerWidth()+17),this.$el.css({position:"",left:"",top:"",display:""}).detach()},redrawWorkflowOutput:function(){this.calloutView&&this.calloutView.resetImage()}}),a=e.View.extend({tagName:"div",initialize:function(e){this.label=e.label,this.node=e.node,this.output=e.output;var t=this,i=this.node;this.$el.attr("class","callout "+this.label).css({display:"none"}).append(n("<div class='buttons'></div>").append(n("<img/>").attr("src",Galaxy.root+"static/images/fugue/asterisk-small-outline.png").click(function(){var e=t.output.name;i.isWorkflowOutput(e)?(i.removeWorkflowOutput(e),t.$("img").attr("src",Galaxy.root+"static/images/fugue/asterisk-small-outline.png")):(i.addWorkflowOutput(e),t.$("img").attr("src",Galaxy.root+"static/images/fugue/asterisk-small.png")),window.workflow_globals.workflow.has_changes=!0,window.workflow_globals.canvas_manager.draw_overview()}))).tooltip({delay:500,title:"Mark dataset as a workflow output. 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Annotations are available when a workflow is viewed."}),t.inputs.unshift({type:"text",name:"__label",label:"Label",value:i.label,help:(0,d.default)("Add a step label."),fixed:!0,onchange:function(t){var r=!1;for(var a in n.nodes){var o=n.nodes[a];if(o.label&&o.label==t&&o.id!=i.id){r=!0;break}}var s=e.data.match("__label");e.element_list[s].model.set("error_text",r&&"Duplicate label. Please fix this before saving the workflow."),e.trigger("change")}})}function o(e,t,n,i){var r=i.node.post_job_actions;t=t||[],t.push(e);for(var a in e.inputs){var s=e.inputs[a];if(s.action){if(s.name="pja__"+n+"__"+s.action,s.pja_arg&&(s.name+="__"+s.pja_arg),s.payload)for(var l in s.payload)s.payload[s.name+"__"+l]=s.payload[l],delete s.payload[l];var c=r[s.action+n];if(c){for(var d in t)t[d].expanded=!0;s.pja_arg?s.value=c.action_arguments&&c.action_arguments[s.pja_arg]||s.value:s.value="true"}}s.inputs&&o(s,t.slice(0),n,i)}}function s(e,t){var n=[],i=[],r=t.datatypes,a=t.node,s=t.workflow;for(var l in r)n.push({0:r[l],1:r[l]});for(l in a.input_terminals)i.push(a.input_terminals[l].name);n.sort(function(e,t){return e.label>t.label?1:e.label<t.label?-1:0}),n.unshift({0:"Sequences",1:"Sequences"}),n.unshift({0:"Roadmaps",1:"Roadmaps"}),n.unshift({0:"Leave unchanged",1:"__empty__"});var c,u={title:"Configure Output: '"+e+"'",type:"section",flat:!0,inputs:[{label:"Label",type:"text",value:(c=a.getWorkflowOutput(e))&&c.label||"",help:"This will provide a short name to describe the output - this must be unique across workflows.",onchange:function(t){s.attemptUpdateOutputLabel(a,e,t)}},{action:"RenameDatasetAction",pja_arg:"newname",label:"Rename dataset",type:"text",value:"",ignore:"",help:'This action will rename the output dataset. Click <a href="https://galaxyproject.org/learn/advanced-workflow/variables/">here</a> for more information. Valid inputs are: <strong>'+i.join(", ")+"</strong>."},{action:"ChangeDatatypeAction",pja_arg:"newtype",label:"Change datatype",type:"select",ignore:"__empty__",value:"__empty__",options:n,help:"This action will change the datatype of the output to the indicated value."},{action:"TagDatasetAction",pja_arg:"tags",label:"Add Tags",type:"text",value:"",ignore:"",help:"This action will set tags for the dataset."},{action:"RemoveTagDatasetAction",pja_arg:"tags",label:"Remove Tags",type:"text",value:"",ignore:"",help:"This action will remove tags for the dataset."},{title:(0,d.default)("Assign columns"),type:"section",flat:!0,inputs:[{action:"ColumnSetAction",pja_arg:"chromCol",label:"Chrom column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"startCol",label:"Start column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"endCol",label:"End column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"strandCol",label:"Strand column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"nameCol",label:"Name column",type:"integer",value:"",ignore:""}],help:"This action will set column assignments in the output dataset. Blank fields are ignored."}]};return o(u,[],e,t),u}function l(e){var t=e.model.attributes,n=t.inputs,i=t.node,r=i.post_job_actions,a=i.output_terminals&&Object.keys(i.output_terminals)[0];if(a){n.push({name:"pja__"+a+"__EmailAction",label:"Email notification",type:"boolean",value:String(Boolean(r["EmailAction"+a])),ignore:"false",help:(0,d.default)("An email notification will be sent when the job has completed."),payload:{host:window.location.host}}),n.push({name:"pja__"+a+"__DeleteIntermediatesAction",label:"Output cleanup",type:"boolean",value:String(Boolean(r["DeleteIntermediatesAction"+a])),ignore:"false",help:"Upon completion of this step, delete non-starred outputs from completed workflow steps if they are no longer required as inputs."});for(var o in i.output_terminals)n.push(s(o,t))}}Object.defineProperty(t,"__esModule",{value:!0});var c=n(3),d=r(c),u=n(5),h=r(u),f=n(13),p=r(f),g=n(81),m=r(g),_=e.View.extend({initialize:function(e){var t=this,n=e.node;this.form=new p.default(h.default.merge(e,{onchange:function(){h.default.request({type:"POST",url:Galaxy.root+"api/workflows/build_module",data:{id:n.id,type:n.type,content_id:n.content_id,inputs:t.form.data.create()},success:function(e){n.update_field_data(e)}})}})),a(this.form),this.form.render()}}),v=e.View.extend({initialize:function(e){var t=this,n=e.node;this.form=new m.default(h.default.merge(e,{text_enable:"Set in Advance",text_disable:"Set at Runtime",narrow:!0,initial_errors:!0,cls:"ui-portlet-narrow",initialmodel:function(e,n){t._customize(n),e.resolve()},buildmodel:function(e,t){t.model.get("postchange")(e,t)},postchange:function(e,r){var a=r.model.attributes,o={tool_id:a.id,tool_version:a.version,type:"tool",inputs:i.extend(!0,{},r.data.create())};Galaxy.emit.debug("tool-form-workflow::postchange()","Sending current state.",o),h.default.request({type:"POST",url:Galaxy.root+"api/workflows/build_module",data:o,success:function(i){r.model.set(i.config_form),t._customize(r),r.update(i.config_form),r.errors(i.config_form),n.update_field_data(i),Galaxy.emit.debug("tool-form-workflow::postchange()","Received new model.",i),e.resolve()},error:function(t){Galaxy.emit.debug("tool-form-workflow::postchange()","Refresh request failed.",t),e.reject()}})}}))},_customize:function(e){var t=e.model.attributes;h.default.deepeach(t.inputs,function(e){e.type&&(-1!=["data","data_collection"].indexOf(e.type)?(e.type="hidden",e.info="Data input '"+e.name+"' ("+h.default.textify(e.extensions)+")",e.value={__class__:"RuntimeValue"}):e.fixed||(e.collapsible_value={__class__:"RuntimeValue"},e.is_workflow=e.options&&0===e.options.length||-1!=["integer","float"].indexOf(e.type)))}),h.default.deepeach(t.inputs,function(e){"conditional"===e.type&&(e.test_param.collapsible_value=void 0)}),l(e),a(e)}});t.default={Default:_,Tool:v}}).call(t,n(2),n(0))},function(e,t,n){"use strict";(function(e,i){function r(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=n(3),s=a(o),l=n(1),c=r(l),d=n(312),u=r(d),h=n(24),f=a(h),p=n(5),g=a(p),m=n(46),_=a(m),v=n(44),y=a(v);n(77);var b=e.Model.extend({is_visible:function(e,t){var n=e.getBoundingClientRect(),r=i("svg")[0].getBoundingClientRect();return!(n.right<0||n.left>r.right||n.bottom<0||n.top>r.bottom)}}),w={drawTicks:function(e,t,n,i,r){var a=e.append("g").selectAll("g").data(t).enter().append("g").selectAll("g").data(n).enter().append("g").attr("class","tick").attr("transform",function(e){return"rotate("+(180*e.angle/Math.PI-90)+")translate("+e.radius+",0)"}),o=[],s=[],l=function(e){return e.angle>Math.PI?"end":null};return r?(o=[0,0,0,-4],s=[4,0,"",".35em"],l=null):(o=[1,0,4,0],s=[0,4,".35em",""]),a.append("line").attr("x1",o[0]).attr("y1",o[1]).attr("x2",o[2]).attr("y1",o[3]).style("stroke","#000"),a.append("text").attr("x",s[0]).attr("y",s[1]).attr("dx",s[2]).attr("dy",s[3]).attr("text-anchor",l).attr("transform",i).text(function(e){return e.label})},formatNum:function(e,t){if(void 0===t&&(t=2),null===e)return null;var n=null;if(Math.abs(e)<1)n=e.toPrecision(t);else{var i=Math.round(e.toPrecision(t));e=Math.abs(e),e<1e3?n=i:e<1e6?n=Math.round((i/1e3).toPrecision(3)).toFixed(0)+"K":e<1e9&&(n=Math.round((i/1e6).toPrecision(3)).toFixed(0)+"M")}return n}},x=e.Model.extend({}),k=e.View.extend({className:"circster",initialize:function(e){this.genome=e.genome,this.label_arc_height=50,this.scale=1,this.circular_views=null,this.chords_views=null,this.model.get("drawables").on("add",this.add_track,this),this.model.get("drawables").on("remove",this.remove_track,this);var t=this.model.get("config");t.get("arc_dataset_height").on("change:value",this.update_track_bounds,this),t.get("track_gap").on("change:value",this.update_track_bounds,this)},get_circular_tracks:function(){return this.model.get("drawables").filter(function(e){return"DiagonalHeatmapTrack"!==e.get("track_type")})},get_chord_tracks:function(){return this.model.get("drawables").filter(function(e){return"DiagonalHeatmapTrack"===e.get("track_type")})},get_tracks_bounds:function(){var e=this.get_circular_tracks(),t=this.model.get("config").get_value("arc_dataset_height"),n=this.model.get("config").get_value("track_gap"),i=Math.min(this.$el.width(),this.$el.height())-20,r=i/2-e.length*(t+n)+n-this.label_arc_height,a=u.range(r,i/2,t+n);return c.map(a,function(e){return[e,e+t]})},render:function(){var e=this,t=e.$el.width(),n=e.$el.height(),i=this.get_circular_tracks(),r=this.get_chord_tracks(),a=e.model.get("config").get_value("total_gap"),o=this.get_tracks_bounds(),s=u.select(e.$el[0]).append("svg").attr("width",t).attr("height",n).attr("pointer-events","all").append("svg:g").call(u.behavior.zoom().on("zoom",function(){var t=d.event.scale;s.attr("transform","translate("+d.event.translate+") scale("+t+")"),e.scale!==t&&(e.zoom_drag_timeout&&clearTimeout(e.zoom_drag_timeout),e.zoom_drag_timeout=setTimeout(function(){},400))})).attr("transform","translate("+t/2+","+n/2+")").append("svg:g").attr("class","tracks");this.circular_views=i.map(function(t,n){var i=new T({el:s.append("g")[0],track:t,radius_bounds:o[n],genome:e.genome,total_gap:a});return i.render(),i}),this.chords_views=r.map(function(t){var n=new E({el:s.append("g")[0],track:t,radius_bounds:o[0],genome:e.genome,total_gap:a});return n.render(),n});var l=this.circular_views[this.circular_views.length-1].radius_bounds[1],c=[l,l+this.label_arc_height];this.label_track_view=new C({el:s.append("g")[0],track:new x,radius_bounds:c,genome:e.genome,total_gap:a}),this.label_track_view.render()},add_track:function(e){var t=this.model.get("config").get_value("total_gap");if("DiagonalHeatmapTrack"===e.get("track_type")){var n=this.circular_views[0].radius_bounds,i=new E({el:u.select("g.tracks").append("g")[0],track:e,radius_bounds:n,genome:this.genome,total_gap:t});i.render(),this.chords_views.push(i)}else{var r=this.get_tracks_bounds();c.each(this.circular_views,function(e,t){e.update_radius_bounds(r[t])}),c.each(this.chords_views,function(e){e.update_radius_bounds(r[0])});var a=this.circular_views.length,o=new T({el:u.select("g.tracks").append("g")[0],track:e,radius_bounds:r[a],genome:this.genome,total_gap:t});o.render(),this.circular_views.push(o)}},remove_track:function(e,t,n){var i=this.circular_views[n.index];this.circular_views.splice(n.index,1),i.$el.remove();var r=this.get_tracks_bounds();c.each(this.circular_views,function(e,t){e.update_radius_bounds(r[t])})},update_track_bounds:function(){var e=this.get_tracks_bounds();c.each(this.circular_views,function(t,n){t.update_radius_bounds(e[n])}),c.each(this.chords_views,function(t){t.update_radius_bounds(e[0])})}}),M=e.View.extend({tagName:"g",initialize:function(e){this.bg_stroke="#ddd",this.loading_bg_fill="#ffc",this.bg_fill="#ddd",this.total_gap=e.total_gap,this.track=e.track,this.radius_bounds=e.radius_bounds,this.genome=e.genome,this.chroms_layout=this._chroms_layout(),this.data_bounds=[],this.scale=1,this.parent_elt=u.select(this.$el[0])},get_fill_color:function(){var e=this.track.get("config").get_value("block_color");return e||(e=this.track.get("config").get_value("color")),e},render:function(){var e=this.parent_elt,t=this.chroms_layout,n=u.svg.arc().innerRadius(this.radius_bounds[0]).outerRadius(this.radius_bounds[1]),r=e.selectAll("g").data(t).enter().append("svg:g"),a=r.append("path").attr("d",n).attr("class","chrom-background").style("stroke",this.bg_stroke).style("fill",this.loading_bg_fill);a.append("title").text(function(e){return e.data.chrom});var o=this,s=o.track.get("data_manager"),l=!s||s.data_is_ready();i.when(l).then(function(){i.when(o._render_data(e)).then(function(){a.style("fill",o.bg_fill),o.render_labels()})})},render_labels:function(){},update_radius_bounds:function(e){this.radius_bounds=e;var t=u.svg.arc().innerRadius(this.radius_bounds[0]).outerRadius(this.radius_bounds[1]);this.parent_elt.selectAll("g>path.chrom-background").transition().duration(1e3).attr("d",t),this._transition_chrom_data(),this._transition_labels()},update_scale:function(e){var t=this.scale;if(this.scale=e,!(e<=t)){var n=this,r=new b;return this.parent_elt.selectAll("path.chrom-data").filter(function(e,t){return r.is_visible(this)}).each(function(t,r){var a,o=u.select(this),s=o.attr("chrom"),l=n.genome.get_chrom_region(s),d=n.track.get("data_manager");d.can_get_more_detailed_data(l)&&(a=n.track.get("data_manager").get_more_detailed_data(l,"Coverage",0,e),i.when(a).then(function(e){o.remove(),n._update_data_bounds();var t=c.find(n.chroms_layout,function(e){return e.data.chrom===s}),i=n.get_fill_color();n._render_chrom_data(n.parent_elt,t,e).style("stroke",i).style("fill",i)}))}),n}},_transition_chrom_data:function(){var e=this.track,t=this.chroms_layout,n=this.parent_elt.selectAll("g>path.chrom-data");if(n[0].length>0){var r=this;i.when(e.get("data_manager").get_genome_wide_data(this.genome)).then(function(i){var a=c.reject(c.map(i,function(e,n){var i=null,a=r._get_path_function(t[n],e);return a&&(i=a(e.data)),i}),function(e){return null===e}),o=e.get("config").get_value("color");n.each(function(e,t){u.select(this).transition().duration(1e3).style("stroke",o).style("fill",o).attr("d",a[t])})})}},_transition_labels:function(){},_update_data_bounds:function(e){this.data_bounds=e||this.get_data_bounds(this.track.get("data_manager").get_genome_wide_data(this.genome)),this._transition_chrom_data()},_render_data:function(e){var t=this,n=this.chroms_layout,r=this.track,a=i.Deferred();return i.when(r.get("data_manager").get_genome_wide_data(this.genome)).then(function(i){t.data_bounds=t.get_data_bounds(i),r.get("config").set_value("min_value",t.data_bounds[0],{silent:!0}),r.get("config").set_value("max_value",t.data_bounds[1],{silent:!0});var o=c.zip(n,i);c.each(o,function(n){var i=n[0],r=n[1];return t._render_chrom_data(e,i,r)});var s=t.get_fill_color();t.parent_elt.selectAll("path.chrom-data").style("stroke",s).style("fill",s),a.resolve(e)}),a},_render_chrom_data:function(e,t,n){},_get_path_function:function(e,t){},_chroms_layout:function(){var e=this.genome.get_chroms_info(),t=u.layout.pie().value(function(e){return e.len}).sort(null),n=t(e),i=2*Math.PI*this.total_gap/e.length;return c.map(n,function(e,t){var n=e.endAngle-i;return e.endAngle=n>e.startAngle?n:e.startAngle,e})}}),C=M.extend({initialize:function(e){M.prototype.initialize.call(this,e),this.innerRadius=this.radius_bounds[0],this.radius_bounds[0]=this.radius_bounds[1],this.bg_stroke="#fff",this.bg_fill="#fff",this.min_arc_len=.05},_render_data:function(e){var t=this,n=e.selectAll("g");n.selectAll("path").attr("id",function(e){return"label-"+e.data.chrom}),n.append("svg:text").filter(function(e){return e.endAngle-e.startAngle>t.min_arc_len}).attr("text-anchor","middle").append("svg:textPath").attr("class","chrom-label").attr("xlink:href",function(e){return"#label-"+e.data.chrom}).attr("startOffset","25%").text(function(e){return e.data.chrom});var i=function(e){var n=(e.endAngle-e.startAngle)/e.value,i=u.range(0,e.value,25e6).map(function(i,r){return{radius:t.innerRadius,angle:i*n+e.startAngle,label:0===r?0:r%3?null:t.formatNum(i)}});return i.length<4&&(i[i.length-1].label=t.formatNum(Math.round((i[i.length-1].angle-e.startAngle)/n))),i},r=function(e){return e.angle>Math.PI?"rotate(180)translate(-16)":null},a=c.filter(this.chroms_layout,function(e){return e.endAngle-e.startAngle>t.min_arc_len});this.drawTicks(this.parent_elt,a,i,r)}});c.extend(C.prototype,w);var S=M.extend({initialize:function(e){M.prototype.initialize.call(this,e);var t=this.track.get("config");t.get("min_value").on("change:value",this._update_min_max,this),t.get("max_value").on("change:value",this._update_min_max,this),t.get("color").on("change:value",this._transition_chrom_data,this)},_update_min_max:function(){var e=this.track.get("config"),t=[e.get_value("min_value"),e.get_value("max_value")];this._update_data_bounds(t),this.parent_elt.selectAll(".min_max").text(function(e,n){return t[n]})},_quantile:function(e,t){return e.sort(u.ascending),u.quantile(e,t)},_render_chrom_data:function(e,t,n){var i=this._get_path_function(t,n);return i?e.datum(n.data).append("path").attr("class","chrom-data").attr("chrom",t.data.chrom).attr("d",i):null},_get_path_function:function(e,t){if("string"==typeof t||!t.data||0===t.data.length)return null;var n=u.scale.linear().domain(this.data_bounds).range(this.radius_bounds).clamp(!0),i=u.scale.linear().domain([0,t.data.length]).range([e.startAngle,e.endAngle]),r=u.svg.line.radial().interpolate("linear").radius(function(e){return n(e[1])}).angle(function(e,t){return i(t)});return u.svg.area.radial().interpolate(r.interpolate()).innerRadius(n(0)).outerRadius(r.radius()).angle(r.angle())},render_labels:function(){var e=this,t=function(){return"rotate(90)"},n=this.drawTicks(this.parent_elt,[this.chroms_layout[0]],this._data_bounds_ticks_fn(),t,!0).classed("min_max",!0);c.each(n,function(t){i(t).click(function(){new _.default.ConfigSettingCollectionView({collection:e.track.get("config")}).render_in_modal("Configure Track")})})},_transition_labels:function(){if(0!==this.data_bounds.length){var e=this,t=c.filter(this.chroms_layout,function(e){return e.endAngle-e.startAngle>.08}),n=c.filter(t,function(e,t){return t%3==0}),i=c.flatten(c.map(n,function(t){return e._data_bounds_ticks_fn()(t)}));this.parent_elt.selectAll("g.tick").data(i).transition().attr("transform",function(e){return"rotate("+(180*e.angle/Math.PI-90)+")translate("+e.radius+",0)"})}},_data_bounds_ticks_fn:function(){var e=this;return function(t){return[{radius:e.radius_bounds[0],angle:t.startAngle,label:e.formatNum(e.data_bounds[0])},{radius:e.radius_bounds[1],angle:t.startAngle,label:e.formatNum(e.data_bounds[1])}]}},get_data_bounds:function(e){}});c.extend(S.prototype,w);var T=S.extend({get_data_bounds:function(e){var t=c.flatten(c.map(e,function(e){return e?c.map(e.data,function(e){return parseInt(e[1],10)||0}):0}));return[c.min(t),this._quantile(t,.98)||c.max(t)]}}),E=M.extend({render:function(){var e=this;i.when(e.track.get("data_manager").data_is_ready()).then(function(){i.when(e.track.get("data_manager").get_genome_wide_data(e.genome)).then(function(t){var n=[],i=e.genome.get_chroms_info();c.each(t,function(t,r){var a=i[r].chrom,o=c.map(t.data,function(t){var n=e._get_region_angle(a,t[1]),i=e._get_region_angle(t[3],t[4]);return{source:{startAngle:n,endAngle:n+.01},target:{startAngle:i,endAngle:i+.01}}});n=n.concat(o)}),e.parent_elt.append("g").attr("class","chord").selectAll("path").data(n).enter().append("path").style("fill",e.get_fill_color()).attr("d",u.svg.chord().radius(e.radius_bounds[0])).style("opacity",1)})})},update_radius_bounds:function(e){this.radius_bounds=e,this.parent_elt.selectAll("path").transition().attr("d",u.svg.chord().radius(this.radius_bounds[0]))},_get_region_angle:function(e,t){var n=c.find(this.chroms_layout,function(t){return t.data.chrom===e});return n.endAngle-(n.endAngle-n.startAngle)*(n.data.len-t)/n.data.len}}),j=e.View.extend({initialize:function(){g.default.cssLoadFile("static/style/circster.css");var e=new f.default.Genome(window.galaxy_config.app.genome),t=new f.default.GenomeVisualization(window.galaxy_config.app.viz_config);t.get("config").add([{key:"arc_dataset_height",label:"Arc Dataset 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b.default.LibraryDatasetView({id:t,show_version:!1,show_permissions:!1})}),this.library_router.on("route:dataset_version",function(e,t,n){Galaxy.libraries.datasetView&&Galaxy.libraries.datasetView.$el.unbind("click"),Galaxy.libraries.datasetView=new b.default.LibraryDatasetView({id:t,ldda_id:n,show_version:!0})}),this.library_router.on("route:dataset_permissions",function(e,t){Galaxy.libraries.datasetView&&Galaxy.libraries.datasetView.$el.unbind("click"),Galaxy.libraries.datasetView=new b.default.LibraryDatasetView({id:t,show_permissions:!0})}),this.library_router.on("route:library_permissions",function(e){Galaxy.libraries.libraryView&&Galaxy.libraries.libraryView.$el.unbind("click"),Galaxy.libraries.libraryView=new x.default.LibraryView({id:e,show_permissions:!0})}),this.library_router.on("route:folder_permissions",function(e){Galaxy.libraries.folderView&&Galaxy.libraries.folderView.$el.unbind("click"),Galaxy.libraries.folderView=new M.default.FolderView({id:e,show_permissions:!0})}),this.library_router.on("route:import_datasets",function(e,t){Galaxy.libraries.folderToolbarView&&Galaxy.libraries.folderListView?Galaxy.libraries.folderToolbarView.showImportModal({source:t}):(Galaxy.libraries.folderToolbarView=new v.default.FolderToolbarView({id:e}),Galaxy.libraries.folderListView=new h.default.FolderListView({id:e}),Galaxy.libraries.folderToolbarView.showImportModal({source:t}))}),e.history.start({pushState:!1})}});t.default={GalaxyApp:T}}).call(t,n(2),n(0))},function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var i=function(e,t){return function(n,i){return n.get("type")===i.get("type")?n.has(e)||i.has(e)?n.has(e)?i.has(e)?n.get(e).toLowerCase()>i.get(e).toLowerCase()?"asc"===t?1:-1:i.get(e).toLowerCase()>n.get(e).toLowerCase()?"asc"===t?-1:1:0:-1:1:0:"folder"===n.get("type")?-1:1}},r=function(e,t){return function(n,i){return n.get(e).toLowerCase()>i.get(e).toLowerCase()?"asc"===t?1:-1:i.get(e).toLowerCase()>n.get(e).toLowerCase()?"asc"===t?-1:1:0}};t.default={generateFolderComparator:i,generateLibraryComparator:r}},function(e,t,n){"use strict";(function(e,i,r){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=n(7),s=a(o),l=n(18),c=a(l),d=n(318),u=a(d),h=e.View.extend({el:"#folder_items_element",progress:0,progressStep:1,folderContainer:null,current_sort_order:"asc",current_sort_key:"name",events:{"click #select-all-checkboxes":"selectAll","click .dataset_row":"selectClickedRow","click .folder_row":"selectClickedRow","click .sort-folder-name":"sortColumnClicked","click .sort-folder-file_ext":"sortColumnClicked","click .sort-folder-description":"sortColumnClicked","click .sort-folder-state":"sortColumnClicked"},collection:null,defaults:{include_deleted:!1,page_count:null,show_page:null},initialize:function(e){this.options=i.defaults(this.options||{},this.defaults,e),this.modal=null,this.rowViews={},this.collection=new c.default.Folder,this.listenTo(this.collection,"add",this.renderOne),this.listenTo(this.collection,"remove",this.removeOne),this.listenTo(this.collection,"sort",this.rePaint),this.listenTo(this.collection,"reset",this.rePaint),this.fetchFolder()},fetchFolder:function(e){var e=e||{};this.options.include_deleted=e.include_deleted;var t=this;this.folderContainer=new c.default.FolderContainer({id:this.options.id}),this.folderContainer.url=this.folderContainer.attributes.urlRoot+this.options.id+"/contents",this.options.include_deleted&&(this.folderContainer.url=this.folderContainer.url+"?include_deleted=true"),this.folderContainer.fetch({success:function(e){t.folder_container=e,t.render()},error:function(e,t){void 0!==t.responseJSON?s.default.error(t.responseJSON.err_msg+" Click this to go back.","",{onclick:function(){Galaxy.libraries.library_router.back()}}):s.default.error("An error occurred. Click this to go back.","",{onclick:function(){Galaxy.libraries.library_router.back()}})}})},render:function(e){this.options=i.extend(this.options,e);var t=this.templateFolder();r(".tooltip").hide();var n,a=this.folderContainer.attributes.metadata.full_path;if(n=1===a.length?0:a[a.length-2][0],this.$el.html(t({path:this.folderContainer.attributes.metadata.full_path,parent_library_id:this.folderContainer.attributes.metadata.parent_library_id,id:this.options.id,upper_folder_id:n,order:this.current_sort_order})),this.options.dataset_id){var o=i.findWhere(self.rowViews,{id:this.options.dataset_id});o?o.showDatasetDetails():s.default.error("Requested dataset not found. Showing folder instead.")}else(null===this.options.show_page||this.options.show_page<1)&&(this.options.show_page=1),this.paginate();r("#center [data-toggle]").tooltip(),r("#center").css("overflow","auto")},paginate:function(e){this.options=i.extend(this.options,e),(null===this.options.show_page||this.options.show_page<1)&&(this.options.show_page=1),this.options.total_items_count=this.folder_container.get("folder").models.length,this.options.page_count=Math.ceil(this.options.total_items_count/Galaxy.libraries.preferences.get("folder_page_size"));var t=Galaxy.libraries.preferences.get("folder_page_size")*(this.options.show_page-1),n=null;n=this.folder_container.get("folder").models.slice(t,t+Galaxy.libraries.preferences.get("folder_page_size")),this.options.items_shown=n.length,Galaxy.libraries.preferences.get("folder_page_size")*this.options.show_page>this.options.total_items_count+Galaxy.libraries.preferences.get("folder_page_size")&&(n=[]),Galaxy.libraries.folderToolbarView.renderPaginator(this.options),this.collection.reset(n)},rePaint:function(e){this.options=i.extend(this.options,e),this.removeAllRows(),this.renderAll(),this.checkEmptiness()},addAll:function(e){i.each(e,function(e){Galaxy.libraries.folderListView.collection.add(e,{current_sort_order:!1})}),r("#center [data-toggle]").tooltip(),this.checkEmptiness(),this.postRender()},postRender:function(){var e=this.folderContainer.attributes.metadata;e.contains_file_or_folder=void 0!==this.collection.findWhere({type:"file"})||void 0!==this.collection.findWhere({type:"folder"}),Galaxy.libraries.folderToolbarView.configureElements(e)},renderAll:function(){var e=this;i.each(this.collection.models.reverse(),function(t){e.renderOne(t)}),this.postRender()},renderOne:function(e){this.options.contains_file_or_folder=!0,e.set("folder_id",this.id);var t=new u.default.FolderRowView({model:e});this.rowViews[e.get("id")]=t,this.$el.find("#first_folder_item").after(t.el)},removeOne:function(e){this.$el.find("tr").filter(function(){return r(this).data("id")&&r(this).data("id")===e.id}).remove()},removeAllRows:function(){r(".library-row").remove()},checkEmptiness:function(){0===this.$el.find(".dataset_row").length&&0===this.$el.find(".folder_row").length?this.$el.find(".empty-folder-message").show():this.$el.find(".empty-folder-message").hide()},sortColumnClicked:function(e){e.preventDefault(),this.current_sort_order="asc"===this.current_sort_order?"desc":"asc",this.current_sort_key=e.currentTarget.className.replace("sort-folder-",""),this.collection.sortFolder(this.current_sort_key,this.current_sort_order),this.renderSortIcon()},selectAll:function(e){var t=e.target.checked,n=this;r(":checkbox","#folder_list_body").each(function(){this.checked=t;var e=r(this).closest("tr");t?n.makeDarkRow(e):n.makeWhiteRow(e)})},selectClickedRow:function(e){var t,n,i="";t=r(e.target).closest("tr"),"input"===e.target.localName?(i=e.target,n="input"):"td"===e.target.localName&&(i=t.find(":checkbox")[0],n="td"),i.checked?"td"===n?(i.checked="",this.makeWhiteRow(t)):"input"===n&&this.makeDarkRow(t):"td"===n?(i.checked="selected",this.makeDarkRow(t)):"input"===n&&this.makeWhiteRow(t)},makeDarkRow:function(e){e.removeClass("light").addClass("dark"),e.find("a").removeClass("light").addClass("dark"),e.find(".fa-file-o").removeClass("fa-file-o").addClass("fa-file"),e.find(".fa-folder-o").removeClass("fa-folder-o").addClass("fa-folder")},makeWhiteRow:function(e){e.removeClass("dark").addClass("light"),e.find("a").removeClass("dark").addClass("light"),e.find(".fa-file").removeClass("fa-file").addClass("fa-file-o"),e.find(".fa-folder").removeClass("fa-folder").addClass("fa-folder-o")},renderSortIcon:function(){"asc"===this.current_sort_order?(r('[class*="sort-icon"]').removeClass("fa-sort-alpha-desc").removeClass("fa-sort-alpha-asc"),r(".sort-icon-"+this.current_sort_key).addClass("fa-sort-alpha-asc")):r(".sort-icon-"+this.current_sort_key).addClass("fa-sort-alpha-desc")},templateFolder:function(){return i.template(['<ol class="breadcrumb">','<li><a title="Return to the list of libraries" href="#">Libraries</a></li>',"<% _.each(path, function(path_item) { %>","<% if (path_item[0] != id) { %>",'<li><a title="Return to this folder" href="#/folders/<%- path_item[0] %>"><%- path_item[1] %></a> </li> ',"<% } else { %>",'<li class="active"><span title="You are in this folder"><%- path_item[1] %></span></li>',"<% } %>","<% }); %>","</ol>",'<table data-library-id="<%- parent_library_id  %>" class="grid table table-condensed">',"<thead>",'<th class="button_heading"></th>','<th style="text-align: center; width: 20px; " title="Check to select all datasets"><input id="select-all-checkboxes" style="margin: 0;" type="checkbox"></th>','<th><a class="sort-folder-name" title="Click to reverse order" href="#">name</a> <span title="Sorted alphabetically" class="sort-icon-name fa fa-sort-alpha-<%- order %>"></span></th>','<th style="width:20%;"><a class="sort-folder-description" title="Click to reverse order" href="#">description</a> <span title="Sorted alphabetically" class="sort-icon-description fa"></span></th>','<th style="width:5%;"><a class="sort-folder-file_ext" title="Click to reverse order" href="#">data type</a> <span title="Sorted alphabetically" class="sort-icon-file_ext fa"></span></th>','<th style="width:10%;">size</th>','<th style="width:160px;">time updated (UTC)</th>','<th style="width:5%;"><a class="sort-folder-state" title="Click to reverse order" href="#">state</a> <span title="Sorted alphabetically" class="sort-icon-state fa"></span></th>','<th style="width:150px;"></th> ',"</thead>",'<tbody id="folder_list_body">','<tr id="first_folder_item">',"<td>",'<a href="#<% if (upper_folder_id !== 0){ print("folders/" + upper_folder_id)} %>" title="Go to parent folder" class="btn_open_folder btn btn-default btn-xs">..<a>',"</td>","<td></td>","<td></td>","<td></td>","<td></td>","<td></td>","<td></td>","<td></td>","<td></td>","</tr>","</tbody>","</table>",'<div class="empty-folder-message" style="display:none;">',"This folder is either empty or you do not have proper access permissions to see the contents. If you expected something to show up",' please consult the <a href="https://galaxyproject.org/data-libraries/#permissions" target="_blank">library security wikipage</a>',' or visit the <a href="https://biostar.usegalaxy.org/" target="_blank">Galaxy support site</a>.',"</div>"].join(""))}});t.default={FolderListView:h}}).call(t,n(2),n(1),n(0))},function(e,t,n){"use strict";(function(e,i,r){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=n(7),s=a(o),l=n(18),c=a(l),d=n(138),u=a(d),h=e.View.extend({events:{"click .undelete_dataset_btn":"undeleteDataset","click .undelete_folder_btn":"undeleteFolder","click .edit_folder_btn":"startModifications","click .cancel_folder_btn":"cancelModifications","click .save_folder_btn":"saveModifications"},defaults:{type:null,visibility_config:{edit_folder_btn:!1,save_folder_btn:!1,cancel_folder_btn:!1,permission_folder_btn:!1},edit_mode:!1},initialize:function(e){this.options=i.defaults(e||{},this.defaults),this.render(this.options)},render:function(e){this.options=i.extend(this.options,e);var t=this.options.model,n=null;return"folder"===t.get("type")||"LibraryFolder"===t.get("model_class")?(this.options.type="folder",this.prepareButtons(t),n=t.get("deleted")?this.templateRowDeletedFolder():this.templateRowFolder()):"file"===t.get("type")||"LibraryDatasetDatasetAssociation"===t.get("model_class")||"LibraryDataset"===t.get("model_class")?(this.options.type="file",n=t.get("deleted")?this.templateRowDeletedFile():this.templateRowFile()):(Galaxy.emit.error("Unknown library item type found."),Galaxy.emit.error(t.get("type")||t.get("model_class"))),this.setElement(n({content_item:t,edit_mode:this.options.edit_mode,button_config:this.options.visibility_config})),this.$el.show(),this},prepareButtons:function(e){var t=this.options.visibility_config;!1===this.options.edit_mode?(t.save_folder_btn=!1,t.cancel_folder_btn=!1,!0===e.get("deleted")?(t.edit_folder_btn=!1,t.permission_folder_btn=!1):!1===e.get("deleted")&&(t.save_folder_btn=!1,t.cancel_folder_btn=!1,!0===e.get("can_modify")&&(t.edit_folder_btn=!0),!0===e.get("can_manage")&&(t.permission_folder_btn=!0))):!0===this.options.edit_mode&&(t.edit_folder_btn=!1,t.permission_folder_btn=!1,t.save_folder_btn=!0,t.cancel_folder_btn=!0),this.options.visibility_config=t},showDatasetDetails:function(){Galaxy.libraries.datasetView=new u.default.LibraryDatasetView({id:this.id})},undeleteDataset:function(e){r(".tooltip").hide();var t=this,n=r(e.target).closest("tr").data("id"),i=Galaxy.libraries.folderListView.collection.get(n);i.url=i.urlRoot+i.id+"?undelete=true",i.destroy({success:function(e,i){Galaxy.libraries.folderListView.collection.remove(n);var r=new c.default.Item(i);Galaxy.libraries.folderListView.collection.add(r),Galaxy.libraries.folderListView.collection.sortFolder("name","asc"),s.default.success("Dataset undeleted. Click this to see it.","",{onclick:function(){var e=t.model.get("folder_id");window.location=Galaxy.root+"library/list#folders/"+e+"/datasets/"+t.id}})},error:function(e,t){void 0!==t.responseJSON?s.default.error("Dataset was not undeleted. "+t.responseJSON.err_msg):s.default.error("An error occured! Dataset was not undeleted. Please try again.")}})},undeleteFolder:function(e){r(".tooltip").hide();var t=r(e.target).closest("tr").data("id"),n=Galaxy.libraries.folderListView.collection.get(t);n.url=n.urlRoot+n.id+"?undelete=true",n.destroy({success:function(e,n){Galaxy.libraries.folderListView.collection.remove(t);var i=new c.default.FolderAsModel(n);Galaxy.libraries.folderListView.collection.add(i),Galaxy.libraries.folderListView.collection.sortFolder("name","asc"),s.default.success("Folder undeleted.")},error:function(e,t){void 0!==t.responseJSON?s.default.error("Folder was not undeleted. "+t.responseJSON.err_msg):s.default.error("An error occured! Folder was not undeleted. Please try again.")}})},startModifications:function(){this.options.edit_mode=!0,this.repaint()},cancelModifications:function(){this.options.edit_mode=!1,this.repaint()},saveModifications:function(){var e=Galaxy.libraries.folderListView.collection.get(this.$el.data("id")),t=!1,n=this.$el.find(".input_folder_name").val();if(void 0!==n&&n!==e.get("name")){if(!(n.length>2))return void s.default.warning("Folder name has to be at least 3 characters long.");e.set("name",n),t=!0}var i=this.$el.find(".input_folder_description").val();if(void 0!==i&&i!==e.get("description")&&(e.set("description",i),t=!0),t){var r=this;e.save(null,{patch:!0,success:function(e){r.options.edit_mode=!1,r.repaint(e),s.default.success("Changes to folder saved.")},error:function(e,t){void 0!==t.responseJSON?s.default.error(t.responseJSON.err_msg):s.default.error("An error occured while attempting to update the folder.")}})}else this.options.edit_mode=!1,this.repaint(e),s.default.info("Nothing has changed.")},repaint:function(){r(".tooltip").hide();var e=this.$el;this.render(),e.replaceWith(this.$el),this.$el.find("[data-toggle]").tooltip()},templateRowFolder:function(){return i.template(['<tr class="folder_row light library-row" data-id="<%- content_item.id %>">',"<td>",'<span title="Folder" class="fa fa-folder-o"/>',"</td>",'<td style="text-align: center; "><input style="margin: 0;" type="checkbox"></td>',"<% if(!edit_mode) { %>","<td>",'<a href="#folders/<%- content_item.id %>"><%- content_item.get("name") %></a>',"</td>","<td>",'<%- content_item.get("description") %>',"</td>","<% } else if(edit_mode){ %>",'<td><textarea rows="4" class="form-control input_folder_name" placeholder="name" ><%- content_item.get("name") %></textarea></td>','<td><textarea rows="4" class="form-control input_folder_description" placeholder="description" ><%- content_item.get("description") %></textarea></td>',"<% } %>","<td>folder</td>","<td></td>","<td>",'<%= _.escape(content_item.get("update_time")) %>',"</td>","<td></td>","<td>","<% if(edit_mode) { %>",'<button data-toggle="tooltip" data-placement="top" title="Save changes" class="primary-button btn-xs save_folder_btn" type="button" style="<% if(button_config.save_folder_btn === false) { print("display:none;") } %>">','<span class="fa fa-floppy-o"/> Save',"</button>",'<button data-toggle="tooltip" data-placement="top" title="Discard changes" class="primary-button btn-xs cancel_folder_btn" type="button" style="<% if(button_config.cancel_folder_btn === false) { print("display:none;") } %>">','<span class="fa fa-times"/> Cancel',"</button>","<% } else if (!edit_mode){%>",'<button data-toggle="tooltip" data-placement="top" title="Modify \'<%- content_item.get("name") %>\'" class="primary-button btn-xs edit_folder_btn" type="button" style="<% if(button_config.edit_folder_btn === false) { print("display:none;") } %>">','<span class="fa fa-pencil"/> Edit',"</button>",'<a href="#/folders/<%- content_item.id %>/permissions">','<button data-toggle="tooltip" data-placement="top" class="primary-button btn-xs permission_folder_btn" title="Permissions of \'<%- content_item.get("name") %>\'" style="<% if(button_config.permission_folder_btn === false) { print("display:none;") } %>">','<span class="fa fa-group"/> Manage',"</button>","</a>","<% } %>","</td>","</tr>"].join(""))},templateRowFile:function(){return i.template(['<tr class="dataset_row light library-row" data-id="<%- content_item.id %>">',"<td>",'<span title="Dataset" class="fa fa-file-o"/>',"</td>",'<td style="text-align: center; ">','<input style="margin: 0;" type="checkbox">',"</td>","<td>",'<a href="#folders/<%- content_item.get("folder_id") %>/datasets/<%- content_item.id %>" class="library-dataset">','<%- content_item.get("name") %>',"<a>","</td>",'<td><%- content_item.get("message") %></td>','<td><%= _.escape(content_item.get("file_ext")) %></td>','<td><%= _.escape(content_item.get("file_size")) %></td>','<td><%= _.escape(content_item.get("update_time")) %></td>',"<td>",'<% if ( content_item.get("state") !== "ok" ) { %>','<%= _.escape(content_item.get("state")) %>',"<% } %>","</td>","<td>",'<% if (content_item.get("is_unrestricted")) { %>','<span data-toggle="tooltip" data-placement="top" title="Unrestricted dataset" style="color:grey;" class="fa fa-globe fa-lg"/>',"<% } %>",'<% if (content_item.get("is_private")) { %>','<span data-toggle="tooltip" data-placement="top" title="Private dataset" style="color:grey;" class="fa fa-key fa-lg"/>',"<% } %>",'<% if ((content_item.get("is_unrestricted") === false) && (content_item.get("is_private") === false)) { %>','<span data-toggle="tooltip" data-placement="top" title="Restricted dataset" style="color:grey;" class="fa fa-shield fa-lg"/>',"<% } %>",'<% if (content_item.get("can_manage")) { %>','<a href="#folders/<%- content_item.get("folder_id") %>/datasets/<%- content_item.id %>/permissions">','<button data-toggle="tooltip" data-placement="top" class="primary-button btn-xs permissions-dataset-btn" title="Permissions of \'<%- content_item.get("name") %>\'">','<span class="fa fa-group"/> Manage',"</button>","</a>","<% } %>","</td>","</tr>"].join(""))},templateRowDeletedFile:function(){return i.template(['<tr class="active deleted_dataset library-row" data-id="<%- content_item.id %>">',"<td>",'<span title="Dataset" class="fa fa-file-o"/>',"</td>","<td></td>",'<td style="color:grey;">','<%- content_item.get("name") %>',"</td>","<td>",'<%- content_item.get("message") %>',"</td>","<td>",'<%= _.escape(content_item.get("file_ext")) %>',"</td>","<td>",'<%= _.escape(content_item.get("file_size")) %>',"</td>","<td>",'<%= _.escape(content_item.get("update_time")) %>',"</td>","<td>",'<% if ( content_item.get("state") !== "ok" ) { %>','<%= _.escape(content_item.get("state")) %>',"<% } %>","</td>","<td>",'<span data-toggle="tooltip" data-placement="top" title="Marked deleted" style="color:grey;" class="fa fa-ban fa-lg"/>','<button data-toggle="tooltip" data-placement="top" title="Undelete \'<%- content_item.get("name") %>\'" class="primary-button btn-xs undelete_dataset_btn" type="button" style="margin-left:1em;">','<span class="fa fa-unlock"/> Undelete',"</button>","</td>","</tr>"].join(""))},templateRowDeletedFolder:function(){return i.template(['<tr class="active deleted_folder light library-row" data-id="<%- content_item.id %>">',"<td>",'<span title="Folder" class="fa fa-folder-o"/>',"</td>","<td></td>",'<td style="color:grey;">','<%- content_item.get("name") %>',"</td>","<td>",'<%- content_item.get("description") %>',"</td>","<td>","folder","</td>","<td></td>","<td>",'<%= _.escape(content_item.get("update_time")) %>',"</td>","<td></td>","<td>",'<span data-toggle="tooltip" data-placement="top" title="Marked deleted" style="color:grey;" class="fa fa-ban fa-lg"/>','<button data-toggle="tooltip" data-placement="top" title="Undelete \'<%- content_item.get("name") %>\'" class="primary-button btn-xs undelete_folder_btn" type="button" style="margin-left:1em;">','<span class="fa fa-unlock"/> Undelete',"</button>","</td>","</tr>"].join(""))}});t.default={FolderRowView:h}}).call(t,n(2),n(1),n(0))},function(e,t,n){"use strict";(function(e,i){function r(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=n(7),o=r(a),s=n(18),l=r(s),c=n(320),d=r(c),u=n(1),h=r(u),f=e.View.extend({el:"#libraries_element",events:{"click .sort-libraries-link":"sort_clicked"},defaults:{page_count:null,show_page:null,all_fetched:!1},initialize:function(e){this.options=h.default.defaults(this.options||{},e,this.defaults);var t=this;this.modal=null,this.collection=new l.default.Libraries,this.collection.url=this.collection.urlRoot+"?deleted=false",this.collection.fetch({success:function(){t.render()},error:function(e,t){void 0!==t.responseJSON?o.default.error(t.responseJSON.err_msg):o.default.error("An error occurred.")}})},render:function(e){this.options=h.default.extend(this.options,e),this.setElement("#libraries_element");var t=this.templateLibraryList(),n=null,r=null,a=function(e){return!0===e.get("public")};if(i(".tooltip").hide(),void 0!==e&&(r=void 0!==e.models?e.models:null),null!==this.collection&&null===r)this.sortLibraries(),n=Galaxy.libraries.preferences.get("with_deleted")?this.collection.models:this.collection.where({deleted:!1}),Galaxy.libraries.preferences.get("without_restricted")&&(n=h.default.filter(n,a));else if(null!==r){if(Galaxy.libraries.preferences.get("with_deleted"))n=r;else{var o=function(e){return!1===e.get("deleted")};n=h.default.filter(r,o)}Galaxy.libraries.preferences.get("without_restricted")&&(n=h.default.filter(n,a))}else n=[];(null===this.options.show_page||this.options.show_page<1)&&(this.options.show_page=1),this.options.total_libraries_count=n.length;var s=Galaxy.libraries.preferences.get("library_page_size")*(this.options.show_page-1);this.options.page_count=Math.ceil(this.options.total_libraries_count/Galaxy.libraries.preferences.get("library_page_size")),this.options.total_libraries_count>0&&s<this.options.total_libraries_count?(n=n.slice(s,s+Galaxy.libraries.preferences.get("library_page_size")),this.options.libraries_shown=n.length,Galaxy.libraries.preferences.get("library_page_size")*this.options.show_page>this.options.total_libraries_count+Galaxy.libraries.preferences.get("library_page_size")&&(n=[]),this.$el.html(t({length:1,order:Galaxy.libraries.preferences.get("sort_order"),search_term:Galaxy.libraries.libraryToolbarView.options.search_term})),Galaxy.libraries.libraryToolbarView.renderPaginator(this.options),this.renderRows(n)):(this.$el.html(t({length:0,order:Galaxy.libraries.preferences.get("sort_order"),search_term:Galaxy.libraries.libraryToolbarView.options.search_term})),Galaxy.libraries.libraryToolbarView.renderPaginator(this.options)),i("#center [data-toggle]").tooltip(),i("#center").css("overflow","auto")},fetchDeleted:function(){if(this.options.all_fetched)this.render();else{var e=this;this.collection.url=this.collection.urlRoot+"?deleted=true",this.collection.fetch({remove:!1,success:function(){e.options.all_fetched=!0,e.render()},error:function(e,t){void 0!==t.responseJSON?o.default.error(t.responseJSON.err_msg):o.default.error("An error occurred.")}})}},renderRows:function(e){for(var t=0;t<e.length;t++){var n=e[t];this.renderOne({library:n})}},renderOne:function(e){var t=e.library,n=new d.default.LibraryRowView(t);this.$el.find("#library_list_body").append(n.el)},sort_clicked:function(){"asc"===Galaxy.libraries.preferences.get("sort_order")?Galaxy.libraries.preferences.set({sort_order:"desc"}):Galaxy.libraries.preferences.set({sort_order:"asc"}),this.render()},sortLibraries:function(){"name"===Galaxy.libraries.preferences.get("sort_by")&&("asc"===Galaxy.libraries.preferences.get("sort_order")?this.collection.sortLibraries("name","asc"):"desc"===Galaxy.libraries.preferences.get("sort_order")&&this.collection.sortLibraries("name","desc"))},searchLibraries:function(e){if(""!==i.trim(e)){var t=null;t=this.collection.search(e),this.options.searching=!0,this.render({models:t,show_page:1})}else this.options.searching=!1,this.render()},templateLibraryList:function(){return h.default.template(['<div class="library_container table-responsive">',"<% if(length === 0) { %>","<% if(search_term.length > 0) { %>","<div>","There are no libraries matching your search. Try different keyword.","</div>","<% } else{ %>","<div>","There are no libraries visible to you here. If you expected some to show up please consult the",' <a href="https://galaxyproject.org/data-libraries/#permissions" target="_blank">library security wikipage</a>',' or visit the <a href="https://biostar.usegalaxy.org/" target="_blank">Galaxy support site</a>.',"</div>","<% }%>","<% } else{ %>",'<table class="grid table table-condensed">',"<thead>",'<th style="width:30%;">','<a class="sort-libraries-link" title="Click to reverse order" href="#">',"name","</a>",'<span title="Sorted alphabetically" class="fa fa-sort-alpha-<%- order %>"/>',"</th>",'<th style="width:22%;">description</th>','<th style="width:22%;">synopsis</th> ','<th style="width:26%;"></th>',"</thead>",'<tbody id="library_list_body">',"</tbody>","</table>","<% }%>","</div>"].join(""))}});t.default={LibraryListView:f}}).call(t,n(2),n(0))},function(e,t,n){"use strict";(function(e,i,r){Object.defineProperty(t,"__esModule",{value:!0});var a=n(7),o=function(e){return e&&e.__esModule?e:{default:e}}(a),s=e.View.extend({events:{"click .edit_library_btn":"edit_button_clicked","click .cancel_library_btn":"cancel_library_modification","click .save_library_btn":"save_library_modification","click .delete_library_btn":"delete_library","click .undelete_library_btn":"undelete_library"},edit_mode:!1,element_visibility_config:{upload_library_btn:!1,edit_library_btn:!1,permission_library_btn:!1,save_library_btn:!1,cancel_library_btn:!1,delete_library_btn:!1,undelete_library_btn:!1},initialize:function(e){this.render(e)},render:function(e){void 0===e&&(e=Galaxy.libraries.libraryListView.collection.get(this.$el.data("id"))),this.prepareButtons(e);var t=this.templateRow();return this.setElement(t({library:e,button_config:this.element_visibility_config,edit_mode:this.edit_mode})),this.$el.show(),this},repaint:function(e){i(".tooltip").hide();var t=this.$el;this.render(),t.replaceWith(this.$el),this.$el.find("[data-toggle]").tooltip()},prepareButtons:function(e){var t=this.element_visibility_config;!1===this.edit_mode?(t.save_library_btn=!1,t.cancel_library_btn=!1,t.delete_library_btn=!1,!0===e.get("deleted")?(t.undelete_library_btn=!0,t.upload_library_btn=!1,t.edit_library_btn=!1,t.permission_library_btn=!1):!1===e.get("deleted")&&(t.save_library_btn=!1,t.cancel_library_btn=!1,t.undelete_library_btn=!1,!0===e.get("can_user_add")&&(t.upload_library_btn=!0),!0===e.get("can_user_modify")&&(t.edit_library_btn=!0),!0===e.get("can_user_manage")&&(t.permission_library_btn=!0))):!0===this.edit_mode&&(t.upload_library_btn=!1,t.edit_library_btn=!1,t.permission_library_btn=!1,t.save_library_btn=!0,t.cancel_library_btn=!0,t.delete_library_btn=!0,t.undelete_library_btn=!1),this.element_visibility_config=t},edit_button_clicked:function(){this.edit_mode=!0,this.repaint()},cancel_library_modification:function(){this.edit_mode=!1,this.repaint()},save_library_modification:function(){var e=Galaxy.libraries.libraryListView.collection.get(this.$el.data("id")),t=!1,n=this.$el.find(".input_library_name").val();if(void 0!==n&&n!==e.get("name")){if(!(n.length>2))return void o.default.warning("Library name has to be at least 3 characters long.");e.set("name",n),t=!0}var i=this.$el.find(".input_library_description").val();void 0!==i&&i!==e.get("description")&&(e.set("description",i),t=!0);var r=this.$el.find(".input_library_synopsis").val();if(void 0!==r&&r!==e.get("synopsis")&&(e.set("synopsis",r),t=!0),t){var a=this;e.save(null,{patch:!0,success:function(e){a.edit_mode=!1,a.repaint(e),o.default.success("Changes to library saved.")},error:function(e,t){void 0!==t.responseJSON?o.default.error(t.responseJSON.err_msg):o.default.error("An error occured while attempting to update the library.")}})}else this.edit_mode=!1,this.repaint(e),o.default.info("Nothing has changed.")},delete_library:function(){var e=Galaxy.libraries.libraryListView.collection.get(this.$el.data("id")),t=this;e.destroy({success:function(e){e.set("deleted",!0),Galaxy.libraries.libraryListView.collection.add(e),t.edit_mode=!1,!1===Galaxy.libraries.preferences.get("with_deleted")?(i(".tooltip").hide(),t.repaint(e),t.$el.remove()):!0===Galaxy.libraries.preferences.get("with_deleted")&&t.repaint(e),o.default.success("Library has been marked deleted.")},error:function(e,t){void 0!==t.responseJSON?o.default.error(t.responseJSON.err_msg):o.default.error("An error occured during deleting the library.")}})},undelete_library:function(){var e=Galaxy.libraries.libraryListView.collection.get(this.$el.data("id")),t=this;e.url=e.urlRoot+e.id+"?undelete=true",e.destroy({success:function(e){e.set("deleted",!1),Galaxy.libraries.libraryListView.collection.add(e),t.edit_mode=!1,t.repaint(e),o.default.success("Library has been undeleted.")},error:function(e,t){void 0!==t.responseJSON?o.default.error(t.responseJSON.err_msg):o.default.error("An error occured while undeleting the library.")}})},templateRow:function(){return r.template(['<tr class="<% if(library.get("deleted") === true) { print("active") } %>" style="display:none;" data-id="<%- library.get("id") %>">',"<% if(!edit_mode) { %>",'<% if(library.get("deleted")) { %>','<td style="color:grey;"><%- library.get("name") %></td>',"<% } else { %>",'<td><a href="#folders/<%- library.get("root_folder_id") %>"><%- library.get("name") %></a></td>',"<% } %>",'<% if(library.get("description")) { %>','<% if( (library.get("description")).length> 80 ) { %>','<td data-toggle="tooltip" data-placement="bottom" title="<%= _.escape(library.get("description")) %>"><%= _.escape(library.get("description")).substring(0, 80) + "..." %></td>',"<% } else { %>",'<td><%= _.escape(library.get("description"))%></td>',"<% } %>","<% } else { %>","<td></td>","<% } %>",'<% if(library.get("synopsis")) { %>','<% if( (library.get("synopsis")).length> 120 ) { %>','<td data-toggle="tooltip" data-placement="bottom" title="<%= _.escape(library.get("synopsis")) %>"><%= _.escape(library.get("synopsis")).substring(0, 120) + "..." %></td>',"<% } else { %>",'<td><%= _.escape(library.get("synopsis"))%></td>',"<% } %>","<% } else { %>","<td></td>","<% } %>","<% } else if(edit_mode){ %>",'<td><textarea rows="4" class="form-control input_library_name" placeholder="name" ><%- library.get("name") %></textarea></td>','<td><textarea rows="4" class="form-control input_library_description" placeholder="description" ><%- library.get("description") %></textarea></td>','<td><textarea rows="4" class="form-control input_library_synopsis" placeholder="synopsis" ><%- library.get("synopsis") %></textarea></td>',"<% } %>",'<td class="right-center">','<% if( (library.get("public")) && (library.get("deleted") === false) ) { %>','<span data-toggle="tooltip" data-placement="top" title="Unrestricted library" style="color:grey;" class="fa fa-globe fa-lg"> </span>',"<% }%>",'<button data-toggle="tooltip" data-placement="top" title="Modify \'<%- library.get("name") %>\'" class="primary-button btn-xs edit_library_btn" type="button" style="<% if(button_config.edit_library_btn === false) { print("display:none;") } %>"><span class="fa fa-pencil"></span> Edit</button>','<a href="#library/<%- library.get("id") %>/permissions"><button data-toggle="tooltip" data-placement="top" title="Permissions of \'<%- library.get("name") %>\'" class="primary-button btn-xs permission_library_btn" type="button" style="<% if(button_config.permission_library_btn === false) { print("display:none;") } %>"><span class="fa fa-group"></span> Manage</button></a>','<button data-toggle="tooltip" data-placement="top" title="Save changes" class="primary-button btn-xs save_library_btn" type="button" style="<% if(button_config.save_library_btn === false) { print("display:none;") } %>"><span class="fa fa-floppy-o"></span> Save</button>','<button data-toggle="tooltip" data-placement="top" title="Discard changes" class="primary-button btn-xs cancel_library_btn" type="button" style="<% if(button_config.cancel_library_btn === false) { print("display:none;") } %>"><span class="fa fa-times"></span> Cancel</button>','<button data-toggle="tooltip" data-placement="top" title="Delete \'<%- library.get("name") %>\'" class="primary-button btn-xs delete_library_btn" type="button" style="<% if(button_config.delete_library_btn === false) { print("display:none;") } %>"><span class="fa fa-trash-o"></span> Delete</button>','<span data-toggle="tooltip" data-placement="top" title="Marked deleted" style="color:grey; <% if(button_config.undelete_library_btn === false) { print("display:none;") } %>" class="fa fa-ban fa-lg"></span>','<button data-toggle="tooltip" data-placement="top" title="Undelete \'<%- library.get("name") %>\' " class="primary-button btn-xs undelete_library_btn" type="button" style="<% if(button_config.undelete_library_btn === false) { print("display:none;") } %>"><span class="fa fa-unlock"></span> Undelete</button>',"</td>","</tr>"].join(""))}});t.default={LibraryRowView:s}}).call(t,n(2),n(0),n(1))},function(e,t,n){"use strict";(function(e,i,r){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=n(3),s=a(o),l=n(7),c=a(l),d=n(18),u=a(d),h=e.View.extend({el:"#center",defaults:{search_term:""},events:{"click #create_new_library_btn":"createLibraryFromModal","click #include_deleted_chk":"includeDeletedChecked","click #exclude_restricted_chk":"excludeRestrictedChecked","click .page_size_prompt":"showPageSizePrompt","keyup .library-search-input":"searchLibraries"},initialize:function(e){this.options=i.defaults(this.options||{},e,this.defaults),this.render()},render:function(){var e=this.templateToolBar(),t=!1,n=!0;Galaxy.user&&(t=Galaxy.user.isAdmin(),n=Galaxy.user.isAnonymous()),this.$el.html(e({admin_user:t,anon_user:n})),t&&(this.$el.find("#include_deleted_chk")[0].checked=Galaxy.libraries.preferences.get("with_deleted"),this.$el.find("#exclude_restricted_chk")[0].checked=Galaxy.libraries.preferences.get("without_restricted"))},renderPaginator:function(e){this.options=i.extend(this.options,e);var t=this.templatePaginator();this.$el.find("#library_paginator").html(t({show_page:parseInt(this.options.show_page),page_count:parseInt(this.options.page_count),total_libraries_count:this.options.total_libraries_count,libraries_shown:this.options.libraries_shown,library_page_size:Galaxy.libraries.preferences.get("library_page_size")}))},createLibraryFromModal:function(e){e.preventDefault(),e.stopPropagation();var t=this;this.modal=Galaxy.modal,this.modal.show({closing_events:!0,title:(0,s.default)("Create New Library"),body:this.templateNewLibraryInModal(),buttons:{Create:function(){t.createNewLibrary()},Close:function(){t.modal.hide()}}})},createNewLibrary:function(){var e=this.serializeNewLibrary();if(this.validateNewLibrary(e)){var t=new u.default.Library,n=this;t.save(e,{success:function(e){Galaxy.libraries.libraryListView.collection.add(e),n.modal.hide(),n.clearLibraryModal(),Galaxy.libraries.libraryListView.render(),c.default.success("Library created.")},error:function(e,t){void 0!==t.responseJSON?c.default.error(t.responseJSON.err_msg):c.default.error("An error occured.")}})}else c.default.error("Library's name is missing.");return!1},showPageSizePrompt:function(e){e.preventDefault();var t=prompt("How many libraries per page do you want to see?",Galaxy.libraries.preferences.get("library_page_size"));null!=t&&t==parseInt(t)&&(Galaxy.libraries.preferences.set({library_page_size:parseInt(t)}),Galaxy.libraries.libraryListView.render({show_page:1}))},clearLibraryModal:function(){r("input[name='Name']").val(""),r("input[name='Description']").val(""),r("input[name='Synopsis']").val("")},serializeNewLibrary:function(){return{name:r("input[name='Name']").val(),description:r("input[name='Description']").val(),synopsis:r("input[name='Synopsis']").val()}},validateNewLibrary:function(e){return""!==e.name},includeDeletedChecked:function(e){e.target.checked?(Galaxy.libraries.preferences.set({with_deleted:!0}),Galaxy.libraries.libraryListView.fetchDeleted()):(Galaxy.libraries.preferences.set({with_deleted:!1}),Galaxy.libraries.libraryListView.render())},excludeRestrictedChecked:function(e){e.target.checked?Galaxy.libraries.preferences.set({without_restricted:!0}):Galaxy.libraries.preferences.set({without_restricted:!1}),Galaxy.libraries.libraryListView.render()},searchLibraries:function(e){var t=r(".library-search-input").val();this.options.search_term=t,Galaxy.libraries.libraryListView.searchLibraries(t)},templateToolBar:function(){return i.template(['<div class="library_style_container">','<div id="toolbar_form">','<div id="library_toolbar">','<form class="form-inline" role="form">','<span><strong><a href="#" title="Go to first page">DATA LIBRARIES</a></strong></span>','<span id="library_paginator" class="library-paginator">',"</span>",'<div class="form-group toolbar-item">','<input type="text" class="form-control library-search-input" placeholder="Search" size="30">',"</div>","<% if(admin_user === true) { %>",'<div class="checkbox toolbar-item" style="height: 20px;">',"<label>",'<input id="include_deleted_chk" type="checkbox">',"include deleted ","</input>","</label>","<label>",'<input id="exclude_restricted_chk" type="checkbox">',"exclude restricted","</input>","</label>","</div>",'<span class="toolbar-item" data-toggle="tooltip" data-placement="top" title="Create New Library">','<button id="create_new_library_btn" class="primary-button btn-xs" type="button"><span class="fa fa-plus"></span> New Library</button>',"</span>","<% } %>",'<span class="help-button" data-toggle="tooltip" data-placement="top" title="See this screen annotated">','<a href="https://galaxyproject.org/data-libraries/screen/list-of-libraries/" target="_blank">','<button class="primary-button" type="button"><span class="fa fa-question-circle"></span> Help</button>',"</a>","</span>","</form>","</div>","</div>",'<div id="libraries_element">',"</div>","</div>"].join(""))},templatePaginator:function(){return i.template(['<ul class="pagination pagination-sm">',"<% if ( ( show_page - 1 ) > 0 ) { %>","<% if ( ( show_page - 1 ) > page_count ) { %>",'<li><a href="#page/1"><span class="fa fa-angle-double-left"></span></a></li>','<li class="disabled"><a href="#page/<% print( show_page ) %>"><% print( show_page - 1 ) %></a></li>',"<% } else { %>",'<li><a href="#page/1"><span class="fa fa-angle-double-left"></span></a></li>','<li><a href="#page/<% print( show_page - 1 ) %>"><% print( show_page - 1 ) %></a></li>',"<% } %>","<% } else { %>",'<li class="disabled"><a href="#page/1"><span class="fa fa-angle-double-left"></span></a></li>','<li class="disabled"><a href="#page/<% print( show_page ) %>"><% print( show_page - 1 ) %></a></li>',"<% } %>",'<li class="active">','<a href="#page/<% print( show_page ) %>"><% print( show_page ) %></a>',"</li>","<% if ( ( show_page ) < page_count ) { %>",'<li><a href="#page/<% print( show_page + 1 ) %>"><% print( show_page + 1 ) %></a></li>','<li><a href="#page/<% print( page_count ) %>"><span class="fa fa-angle-double-right"></span></a></li>',"<% } else { %>",'<li class="disabled"><a href="#page/<% print( show_page  ) %>"><% print( show_page + 1 ) %></a></li>','<li class="disabled"><a href="#page/<% print( page_count ) %>"><span class="fa fa-angle-double-right"></span></a></li>',"<% } %>","</ul>","<span>",' <%- libraries_shown %> libraries shown <a href="" data-toggle="tooltip" data-placement="top" title="currently <%- library_page_size %> per page" class="page_size_prompt">(change)</a>',"</span>","<span>"," <%- total_libraries_count %> total","</span>"].join(""))},templateNewLibraryInModal:function(){return i.template(['<div id="new_library_modal">',"<form>",'<input type="text" name="Name" value="" placeholder="Name" autofocus>','<input type="text" name="Description" value="" placeholder="Description">','<input type="text" name="Synopsis" value="" placeholder="Synopsis">',"</form>","</div>"].join(""))}});t.default={LibraryToolbarView:h}}).call(t,n(2),n(1),n(0))},function(e,t,n){"use strict";(function(e,i,r,a){function o(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=n(3),l=o(s),c=n(5),d=o(c),u=n(7),h=o(u),f=n(18),p=o(f),g=n(12),m=o(g),_=n(28),v=o(_),y=n(73),b=o(y),w=n(74),x=o(w),k=n(20),M=o(k);n(139);var C=e.View.extend({el:"#center",events:{"click .toolbtn-create-folder":"createFolderFromModal","click .toolbtn-bulk-import":"importToHistoryModal","click .include-deleted-datasets-chk":"checkIncludeDeleted","click .toolbtn-bulk-delete":"deleteSelectedItems","click .toolbtn-show-locinfo":"showLocInfo","click .page-size-prompt":"showPageSizePrompt","click .toolbtn-collection-import":"showCollectionSelect"},defaults:{can_add_library_item:!1,contains_file_or_folder:!1,chain_call_control:{total_number:0,failed_number:0},disabled_jstree_element:"folders"},modal:null,jstree:null,histories:null,select_genome:null,select_extension:null,list_extensions:[],auto:{id:"auto",text:"Auto-detect",description:"This system will try to detect the file type automatically. If your file is not detected properly as one of the known formats, it most likely means that it has some format problems (e.g., different number of columns on different rows). You can still coerce the system to set your data to the format you think it should be. You can also upload compressed files, which will automatically be decompressed."},list_genomes:[],initialize:function(e){this.options=i.defaults(e||{},this.defaults),this.fetchExtAndGenomes(),this.render()},render:function(e){this.options=i.extend(this.options,e);var t=this.templateToolBar(),n={id:this.options.id,is_admin:!1,is_anonym:!0,mutiple_add_dataset_options:!1};Galaxy.user&&(n.is_admin=Galaxy.user.isAdmin(),n.is_anonym=Galaxy.user.isAnonymous(),null===Galaxy.config.user_library_import_dir&&!1===Galaxy.config.allow_library_path_paste&&null===Galaxy.config.library_import_dir||(n.mutiple_add_dataset_options=!0)),this.$el.html(t(n))},renderPaginator:function(e){this.options=i.extend(this.options,e);var t=this.templatePaginator();r("body").find(".folder-paginator").html(t({id:this.options.id,show_page:parseInt(this.options.show_page),page_count:parseInt(this.options.page_count),total_items_count:this.options.total_items_count,items_shown:this.options.items_shown,folder_page_size:Galaxy.libraries.preferences.get("folder_page_size")}))},configureElements:function(e){this.options=i.extend(this.options,e),!0===this.options.can_add_library_item?r(".add-library-items").show():r(".add-library-items").hide(),!0===this.options.contains_file_or_folder&&Galaxy.user?Galaxy.user.isAnonymous()?(r(".dataset-manipulation").show(),r(".logged-dataset-manipulation").hide()):(r(".logged-dataset-manipulation").show(),r(".dataset-manipulation").show()):(r(".logged-dataset-manipulation").hide(),r(".dataset-manipulation").hide()),this.$el.find("[data-toggle]").tooltip()},createFolderFromModal:function(e){var t=this;e.preventDefault(),e.stopPropagation();var n=this.templateNewFolderInModal();this.modal=Galaxy.modal,this.modal.show({closing_events:!0,title:(0,l.default)("Create New Folder"),body:n(),buttons:{Create:function(){t.createNewFolderEvent()},Close:function(){Galaxy.modal.hide()}}})},createNewFolderEvent:function(){var t=this.serializeNewFolder();if(this.validateNewFolder(t)){var n,i=new p.default.FolderAsModel,r=e.history.fragment.split("/");n=r.indexOf("page")>-1?r[r.length-3]:r[r.length-1],i.url=i.urlRoot+n,i.save(t,{success:function(e){Galaxy.modal.hide(),h.default.success("Folder created."),e.set({type:"folder"}),Galaxy.libraries.folderListView.collection.add(e)},error:function(e,t){Galaxy.modal.hide(),void 0!==t.responseJSON?h.default.error(t.responseJSON.err_msg):h.default.error("An error occurred.")}})}else h.default.error("Folder's name is missing.");return!1},serializeNewFolder:function(){return{name:r("input[name='Name']").val(),description:r("input[name='Description']").val()}},validateNewFolder:function(e){return""!==e.name},importToHistoryModal:function(e){var t=this;e.preventDefault();var n=this.findCheckedRows(),i=this.templateImportIntoHistoryModal();if(0===n.length)h.default.info("You must select some datasets first.");else{this.fetchUserHistories().done(function(){t.modal=Galaxy.modal,t.modal.show({closing_events:!0,title:(0,l.default)("Import into History"),body:i({histories:t.histories.models}),buttons:{Import:function(){t.importAllIntoHistory()},Close:function(){Galaxy.modal.hide()}}})}).fail(function(e,t){void 0!==t.responseJSON?h.default.error(t.responseJSON.err_msg):h.default.error("An error occurred.")})}},fetchUserHistories:function(){return this.histories=new p.default.GalaxyHistories,this.histories.fetch()},importAllIntoHistory:function(){var e=this;this.modal.disableButton("Import");var t=this.modal.$("input[name=history_name]").val();if(""!==t)this.createNewHistory(t).done(function(t){e.processImportToHistory(t.id,t.name)}).fail(function(e,t,n){h.default.error("An error occurred.")}).always(function(){e.modal.enableButton("Import")});else{var n=r("select[name=import_to_history] option:selected").val(),i=r("select[name=import_to_history] option:selected").text();this.processImportToHistory(n,i),this.modal.enableButton("Import")}},createNewHistory:function(e){return r.post(Galaxy.root+"api/histories",{name:e})},processImportToHistory:function(e,t){for(var n=this.findCheckedItems(),i=[],r=n.dataset_ids.length-1;r>=0;r--){var o=n.dataset_ids[r],s=new p.default.HistoryItem;s.url=s.urlRoot+e+"/contents",s.content=o,s.source="library",i.push(s)}for(var l=n.folder_ids.length-1;l>=0;l--){var c=n.folder_ids[l],s=new p.default.HistoryItem;s.url=s.urlRoot+e+"/contents",s.content=c,s.source="library_folder",i.push(s)}this.initChainCallControl({length:i.length,action:"to_history",history_name:t}),a.getJSON(Galaxy.root+"history/set_as_current?id="+e),this.chainCallImportingIntoHistory(i,t)},updateProgress:function(){this.progress+=this.progressStep,r(".progress-bar-import").width(Math.round(this.progress)+"%");var e=Math.round(this.progress)+"% Complete";r(".completion_span").text(e)},download:function(e){var t=this.findCheckedItems(),n=Galaxy.root+"api/libraries/datasets/download/"+e,i={ld_ids:t.dataset_ids,folder_ids:t.folder_ids};this.processDownload(n,i,"get")},processDownload:function(e,t,n){if(e&&t){t="string"==typeof t?t:r.param(t);var i="";r.each(t.split("&"),function(){var e=this.split("=");i+='<input type="hidden" name="'+e[0]+'" value="'+e[1]+'" />'}),r('<form action="'+e+'" method="'+(n||"post")+'">'+i+"</form>").appendTo("body").submit().remove(),h.default.info("Your download will begin soon.")}else h.default.error("An error occurred.")},addFilesFromHistoryModal:function(){var e=this;this.histories=new p.default.GalaxyHistories,this.histories.fetch().done(function(){e.modal=Galaxy.modal;var t=e.templateAddFilesFromHistory();e.modal.show({closing_events:!0,title:(0,l.default)("Adding datasets from your history"),body:t({histories:e.histories.models}),buttons:{Add:function(){e.addAllDatasetsFromHistory()},Close:function(){Galaxy.modal.hide()}},closing_callback:function(){Galaxy.libraries.library_router.navigate("folders/"+e.id,{trigger:!0})}}),e.fetchAndDisplayHistoryContents(e.histories.models[0].id),r("#dataset_add_bulk").change(function(t){e.fetchAndDisplayHistoryContents(t.target.value)})}).fail(function(e,t){void 0!==t.responseJSON?h.default.error(t.responseJSON.err_msg):h.default.error("An error occurred.")})},importFilesFromPathModal:function(){var e=this;this.modal=Galaxy.modal;var t=this.templateImportPathModal();this.modal.show({closing_events:!0,title:(0,l.default)("Please enter paths to import"),body:t({}),buttons:{Import:function(){e.importFromPathsClicked(e)},Close:function(){Galaxy.modal.hide()}},closing_callback:function(){Galaxy.libraries.library_router.navigate("folders/"+e.id,{trigger:!0})}}),this.renderSelectBoxes()},fetchExtAndGenomes:function(){var e=this;d.default.get({url:Galaxy.root+"api/datatypes?extension_only=False",success:function(t){e.list_extensions=[];for(var n in t)e.list_extensions.push({id:t[n].extension,text:t[n].extension,description:t[n].description,description_url:t[n].description_url});e.list_extensions.sort(function(e,t){return e.id>t.id?1:e.id<t.id?-1:0}),e.list_extensions.unshift(e.auto)},cache:!0}),d.default.get({url:Galaxy.root+"api/genomes",success:function(t){e.list_genomes=[];for(var n in t)e.list_genomes.push({id:t[n][1],text:t[n][0]});e.list_genomes.sort(function(e,t){return e.id>t.id?1:e.id<t.id?-1:0})},cache:!0})},renderSelectBoxes:function(){this.select_genome=new m.default.View({css:"library-genome-select",data:this.list_genomes,container:Galaxy.modal.$el.find("#library_genome_select"),value:"?"}),this.select_extension=new m.default.View({css:"library-extension-select",data:this.list_extensions,container:Galaxy.modal.$el.find("#library_extension_select"),value:"auto"})},importFilesFromGalaxyFolderModal:function(e){var t=this,n=this.templateBrowserModal();this.modal=Galaxy.modal,this.modal.show({closing_events:!0,title:(0,l.default)("Please select folders or files"),body:n({}),buttons:{Import:function(){t.importFromJstreePath(t,e)},Close:function(){Galaxy.modal.hide()}},closing_callback:function(){Galaxy.libraries.library_router.navigate("folders/"+t.id,{trigger:!0})}}),r(".libimport-select-all").bind("click",function(){r("#jstree_browser").jstree("check_all")}),r(".libimport-select-none").bind("click",function(){r("#jstree_browser").jstree("uncheck_all")}),this.renderSelectBoxes(),e.disabled_jstree_element="folders",this.renderJstree(e),r("input[type=radio]").change(function(n){"jstree-disable-folders"===n.target.value?(e.disabled_jstree_element="folders",t.renderJstree(e),r(".jstree-folders-message").hide(),r(".jstree-preserve-structure").hide(),r(".jstree-files-message").show()):"jstree-disable-files"===n.target.value&&(r(".jstree-files-message").hide(),r(".jstree-folders-message").show(),r(".jstree-preserve-structure").show(),e.disabled_jstree_element="files",t.renderJstree(e))})},renderJstree:function(e){this.options=i.extend(this.options,e);var t=e.source||"userdir",n=this.options.disabled_jstree_element;this.jstree=new p.default.Jstree,this.jstree.url=this.jstree.urlRoot+"?target="+t+"&format=jstree&disable="+n,this.jstree.fetch({success:function(e,t){r("#jstree_browser").jstree("destroy"),r("#jstree_browser").jstree({core:{data:e},plugins:["types","checkbox"],types:{folder:{icon:"jstree-folder"},file:{icon:"jstree-file"}},checkbox:{three_state:!1}})},error:function(e,t){void 0!==t.responseJSON?404001===t.responseJSON.err_code?h.default.warning(t.responseJSON.err_msg):h.default.error(t.responseJSON.err_msg):h.default.error("An error occurred.")}})},importFromPathsClicked:function(){var e=this.modal.$el.find(".preserve-checkbox").is(":checked"),t=this.modal.$el.find(".link-checkbox").is(":checked"),n=this.modal.$el.find(".spacetab-checkbox").is(":checked"),i=this.modal.$el.find(".posix-checkbox").is(":checked"),a=this.modal.$el.find(".tag-files").is(":checked"),o=this.select_extension.value(),s=this.select_genome.value(),l=r("textarea#import_paths").val(),c=[];if(l){this.modal.disableButton("Import"),l=l.split("\n");for(var d=l.length-1;d>=0;d--){var u=l[d].trim();0!==u.length&&c.push(u)}this.initChainCallControl({length:c.length,action:"adding_datasets"}),this.chainCallImportingFolders({paths:c,preserve_dirs:e,link_data:t,space_to_tab:n,to_posix_lines:i,source:"admin_path",file_type:o,tag_using_filenames:a,dbkey:s})}else h.default.info("Please enter a path relative to Galaxy root.")},initChainCallControl:function(e){var t;switch(e.action){case"adding_datasets":t=this.templateAddingDatasetsProgressBar(),this.modal.$el.find(".modal-body").html(t({folder_name:this.options.folder_name}));break;case"deleting_datasets":t=this.templateDeletingItemsProgressBar(),this.modal.$el.find(".modal-body").html(t());break;case"to_history":t=this.templateImportIntoHistoryProgressBar(),this.modal.$el.find(".modal-body").html(t({history_name:e.history_name}));break;default:Galaxy.emit.error("Wrong action specified.","datalibs")}this.progress=0,this.progressStep=100/e.length,this.options.chain_call_control.total_number=e.length,this.options.chain_call_control.failed_number=0},importFromJstreePath:function(e,t){var n=r("#jstree_browser").jstree().get_selected(!0),a=i.filter(n,function(e){return 0==e.state.disabled}),o=this.modal.$el.find(".preserve-checkbox").is(":checked"),s=this.modal.$el.find(".link-checkbox").is(":checked"),l=this.modal.$el.find(".spacetab-checkbox").is(":checked"),c=this.modal.$el.find(".posix-checkbox").is(":checked"),d=this.select_extension.value(),u=this.select_genome.value(),f=this.modal.$el.find(".tag-files").is(":checked"),p=a[0].type,g=[];if(a.length<1)h.default.info("Please select some items first.");else{this.modal.disableButton("Import");for(var m=a.length-1;m>=0;m--)void 0!==a[m].li_attr.full_path&&g.push(a[m].li_attr.full_path);if(this.initChainCallControl({length:g.length,action:"adding_datasets"}),"folder"===p){var _=t.source+"_folder";this.chainCallImportingFolders({paths:g,preserve_dirs:o,link_data:s,space_to_tab:l,to_posix_lines:c,source:_,file_type:d,dbkey:u,tag_using_filenames:f})}else if("file"===p){var _=t.source+"_file";this.chainCallImportingUserdirFiles({paths:g,file_type:d,dbkey:u,link_data:s,space_to_tab:l,to_posix_lines:c,source:_,tag_using_filenames:f})}}},fetchAndDisplayHistoryContents:function(e){var t=this;new p.default.HistoryContents({id:e}).fetch({success:function(n){var i=t.templateHistoryContents();t.histories.get(e).set({contents:n}),t.modal.$el.find(".library_selected_history_content").html(i({history_contents:n.models.reverse()})),t.modal.$el.find(".history-import-select-all").bind("click",function(){r(".library_selected_history_content [type=checkbox]").prop("checked",!0)}),t.modal.$el.find(".history-import-unselect-all").bind("click",function(){r(".library_selected_history_content [type=checkbox]").prop("checked",!1)})},error:function(e,t){void 0!==t.responseJSON?h.default.error(t.responseJSON.err_msg):h.default.error("An error occurred.")}})},addAllDatasetsFromHistory:function(){var e=this.modal.$el.find(".library_selected_history_content").find(":checked"),t=[],n=[],i=[];if(e.length<1)h.default.info("You must select some datasets first.");else{this.modal.disableButton("Add"),e.each(function(){var e=r(this).closest("li").data("id");if(e){var i=r(this).closest("li").data("name");t.push(e),n.push(i)}});for(var a=t.length-1;a>=0;a--){var o=t[a],s=new p.default.Item;s.url=Galaxy.root+"api/folders/"+this.options.id+"/contents","collection"===n[a]?s.set({from_hdca_id:o}):s.set({from_hda_id:o}),i.push(s)}this.initChainCallControl({length:i.length,action:"adding_datasets"}),this.chainCallAddingHdas(i)}},chainCallImportingIntoHistory:function(e,t){var n=this,i=e.pop();if(void 0===i)return 0===this.options.chain_call_control.failed_number?h.default.success("Selected datasets imported into history. Click this to start analyzing it.","",{onclick:function(){window.location=Galaxy.root}}):this.options.chain_call_control.failed_number===this.options.chain_call_control.total_number?h.default.error("There was an error and no datasets were imported into history."):this.options.chain_call_control.failed_number<this.options.chain_call_control.total_number&&h.default.warning("Some of the datasets could not be imported into history. Click this to see what was imported.","",{onclick:function(){window.location=Galaxy.root}}),Galaxy.modal.hide(),!0;r.when(i.save({content:i.content,source:i.source})).done(function(){n.updateProgress(),n.chainCallImportingIntoHistory(e,t)}).fail(function(){n.options.chain_call_control.failed_number+=1,n.updateProgress(),n.chainCallImportingIntoHistory(e,t)})},chainCallImportingUserdirFiles:function(e){var t=this,n=e.paths.pop();if(void 0===n)return 0===this.options.chain_call_control.failed_number?(h.default.success("Selected files imported into the current folder"),Galaxy.modal.hide()):h.default.error("An error occured."),!0;r.when(r.post(Galaxy.root+"api/libraries/datasets?encoded_folder_id="+this.id+"&source="+e.source+"&path="+n+"&file_type="+e.file_type+"&link_data="+e.link_data+"&space_to_tab="+e.space_to_tab+"&to_posix_lines="+e.to_posix_lines+"&dbkey="+e.dbkey+"&tag_using_filenames="+e.tag_using_filenames)).done(function(n){t.updateProgress(),t.chainCallImportingUserdirFiles(e)}).fail(function(){t.options.chain_call_control.failed_number+=1,t.updateProgress(),t.chainCallImportingUserdirFiles(e)})},chainCallImportingFolders:function(e){var t=this,n=e.paths.pop();if(void 0===n)return 0===this.options.chain_call_control.failed_number?(h.default.success("Selected folders and their contents imported into the current folder."),Galaxy.modal.hide()):h.default.error("An error occured."),!0;r.when(r.post(Galaxy.root+"api/libraries/datasets?encoded_folder_id="+this.id+"&source="+e.source+"&path="+n+"&preserve_dirs="+e.preserve_dirs+"&link_data="+e.link_data+"&to_posix_lines="+e.to_posix_lines+"&space_to_tab="+e.space_to_tab+"&file_type="+e.file_type+"&dbkey="+e.dbkey+"&tag_using_filenames="+e.tag_using_filenames)).done(function(n){t.updateProgress(),t.chainCallImportingFolders(e)}).fail(function(){t.options.chain_call_control.failed_number+=1,t.updateProgress(),t.chainCallImportingFolders(e)})},chainCallAddingHdas:function(e){var t=this;this.added_hdas=new p.default.Folder;var n=e.pop();if(void 0===n)return 0===this.options.chain_call_control.failed_number?h.default.success("Selected datasets from history added to the folder"):this.options.chain_call_control.failed_number===this.options.chain_call_control.total_number?h.default.error("There was an error and no datasets were added to the folder."):this.options.chain_call_control.failed_number<this.options.chain_call_control.total_number&&h.default.warning("Some of the datasets could not be added to the folder"),Galaxy.modal.hide(),this.added_hdas;r.when(n.save({from_hda_id:n.get("from_hda_id")})).done(function(n){Galaxy.libraries.folderListView.collection.add(n),t.updateProgress(),t.chainCallAddingHdas(e)}).fail(function(){t.options.chain_call_control.failed_number+=1,t.updateProgress(),t.chainCallAddingHdas(e)})},chainCallDeletingItems:function(e){var t=this;this.deleted_items=new p.default.Folder;var n=e.pop();if(void 0===n)return 0===this.options.chain_call_control.failed_number?h.default.success("Selected items were deleted."):this.options.chain_call_control.failed_number===this.options.chain_call_control.total_number?h.default.error("There was an error and no items were deleted. Please make sure you have sufficient permissions."):this.options.chain_call_control.failed_number<this.options.chain_call_control.total_number&&h.default.warning("Some of the items could not be deleted. Please make sure you have sufficient permissions."),Galaxy.modal.hide(),this.deleted_items;n.destroy().done(function(i){if(Galaxy.libraries.folderListView.collection.remove(n.id),t.updateProgress(),Galaxy.libraries.folderListView.options.include_deleted){var r=null;"folder"===i.type||"LibraryFolder"===i.model_class?r=new p.default.FolderAsModel(i):"file"===i.type||"LibraryDataset"===i.model_class?r=new p.default.Item(i):(Galaxy.emit.error("Unknown library item type found.","datalibs"),Galaxy.emit.error(i.type||i.model_class,"datalibs")),Galaxy.libraries.folderListView.collection.add(r)}t.chainCallDeletingItems(e)}).fail(function(){t.options.chain_call_control.failed_number+=1,t.updateProgress(),t.chainCallDeletingItems(e)})},checkIncludeDeleted:function(e){e.target.checked?Galaxy.libraries.folderListView.fetchFolder({include_deleted:!0}):Galaxy.libraries.folderListView.fetchFolder({include_deleted:!1})},deleteSelectedItems:function(){var e=[],t=[],n=this.findCheckedRows();if(0===n.length)h.default.info("You must select at least one item for deletion.");else{var i=this.templateDeletingItemsProgressBar();this.modal=Galaxy.modal,this.modal.show({closing_events:!0,title:(0,l.default)("Deleting selected items"),body:i({}),buttons:{Close:function(){Galaxy.modal.hide()}}}),this.options.chain_call_control.total_number=0,this.options.chain_call_control.failed_number=0,n.each(function(){var n=r(this).closest("tr").data("id");void 0!==n&&("F"==n.substring(0,1)?t.push(n):e.push(n))});var a=e.length+t.length;this.progressStep=100/a,this.progress=0;for(var o=[],s=e.length-1;s>=0;s--){var c=new p.default.Item({id:e[s]});o.push(c)}for(var d=t.length-1;d>=0;d--){var u=new p.default.FolderAsModel({id:t[d]});o.push(u)}this.options.chain_call_control.total_number=a,this.chainCallDeletingItems(o)}},showLocInfo:function(){var e=this,t=null;null!==Galaxy.libraries.libraryListView?(t=Galaxy.libraries.libraryListView.collection.get(this.options.parent_library_id),this.showLocInfoModal(t)):(t=new p.default.Library({id:this.options.parent_library_id}),t.fetch({success:function(){e.showLocInfoModal(t)},error:function(e,t){void 0!==t.responseJSON?h.default.error(t.responseJSON.err_msg):h.default.error("An error occurred.")}}))},showLocInfoModal:function(e){var t=this.templateLocInfoInModal();this.modal=Galaxy.modal,this.modal.show({closing_events:!0,title:(0,l.default)("Location Details"),body:t({library:e,options:this.options}),buttons:{Close:function(){Galaxy.modal.hide()}}})},showImportModal:function(e){switch(e.source){case"history":this.addFilesFromHistoryModal();break;case"importdir":this.importFilesFromGalaxyFolderModal({source:"importdir"});break;case"path":this.importFilesFromPathModal();break;case"userdir":this.importFilesFromGalaxyFolderModal({source:"userdir"});break;default:Galaxy.libraries.library_router.back(),h.default.error("Invalid import source.")}},showPageSizePrompt:function(e){e.preventDefault();var t=prompt("How many items per page do you want to see?",Galaxy.libraries.preferences.get("folder_page_size"));null!=t&&t==parseInt(t)&&(Galaxy.libraries.preferences.set({folder_page_size:parseInt(t)}),Galaxy.libraries.folderListView.render({id:this.options.id,show_page:1}))},findCheckedRows:function(){return r("#folder_list_body").find(":checked")},findCheckedItems:function(){var e=[],t=[];return this.findCheckedRows().each(function(){var n=r(this).closest("tr").data("id");"F"==n.substring(0,1)?e.push(n):t.push(n)}),{folder_ids:e,dataset_ids:t}},showCollectionSelect:function(e){var t=this;e.preventDefault();var n=this.findCheckedItems(),i=this.templateCollectionSelectModal();this.modal=Galaxy.modal,this.modal.show({closing_events:!0,title:"Create History Collection from Datasets",body:i({selected_datasets:n.dataset_ids.length}),buttons:{Continue:function(){t.showColectionBuilder(n.dataset_ids)},Close:function(){Galaxy.modal.hide()}}}),this.prepareCollectionTypeSelect(),this.prepareHistoryTypeSelect()},prepareCollectionTypeSelect:function(){var e=this;this.collectionType="list",this.select_collection_type=new m.default.View({css:"library-collection-type-select",container:this.modal.$el.find(".library-collection-type-select"),data:[{id:"list",text:"List"},{id:"paired",text:"Paired"},{id:"list:paired",text:"List of Pairs"}],value:"list",onchange:function(t){e.updateCollectionType(t)}})},prepareHistoryTypeSelect:function(){var e=this;this.fetchUserHistories().done(function(){for(var t=[],n=e.histories.length-1;n>=0;n--)t.unshift({id:e.histories.models[n].id,text:e.histories.models[n].get("name")});e.select_collection_history=new m.default.View({css:"library-collection-history-select",container:e.modal.$el.find(".library-collection-history-select"),data:t,value:t[0].id})})},updateCollectionType:function(e){this.collectionType=e},showColectionBuilder:function(t){var n=this,i=[],r=this.modal.$('input[type="radio"]:checked').val();if("selection"===r)for(var a=t.length-1;a>=0;a--){var o={},s=Galaxy.libraries.folderListView.folder_container.get("folder").get(t[a]);o.id=t[a],o.name=s.get("name"),o.deleted=s.get("deleted"),o.state=s.get("state"),i.push(o)}else"folder"===r&&(i=new e.Collection(Galaxy.libraries.folderListView.folder_container.get("folder").where({type:"file"})).toJSON());var l=this.modal.$("input[name=history_name]").val();if(""!==l)this.createNewHistory(l).done(function(e){h.default.success("History created"),n.collectionImport(i,e.id,e.name)}).fail(function(e,t,n){h.default.error("An error occurred.")});else{var c=this.select_collection_history.value(),d=this.select_collection_history.text();this.collectionImport(i,c,d)}},collectionImport:function(e,t,n){var i=this,r="Creating Collection in "+n,a=void 0,o=void 0;if("list"===this.collectionType)a=v.default.ListCollectionCreator,o=function(e,n,r){return e=e.map(function(e){return{id:e.id,name:e.name,src:"ldda"}}),i.createHDCA(e,i.collectionType,n,r,t)},v.default.collectionCreatorModal(e,{creationFn:o,title:r,defaultHideSourceItems:!0},a);else if("paired"===this.collectionType)a=b.default.PairCollectionCreator,o=function(e,n,r){return e=[{name:"forward",src:"ldda",id:e[0].id},{name:"reverse",src:"ldda",id:e[1].id}],i.createHDCA(e,i.collectionType,n,r,t)},v.default.collectionCreatorModal(e,{creationFn:o,title:r,defaultHideSourceItems:!0},a);else if("list:paired"===this.collectionType){var s=e.map(function(e){return{id:e.id,name:e.name,src:"ldda"}});x.default.pairedCollectionCreatorModal(s,{historyId:t,title:r,defaultHideSourceItems:!0})}},createHDCA:function(e,t,n,i,r,a){return new M.default.HistoryDatasetCollection({history_content_type:"dataset_collection",collection_type:t,history_id:r,name:n,hide_source_items:i||!1,element_identifiers:e}).save(a)},templateToolBar:function(){return i.template(['<div class="library_style_container">','<div id="library_toolbar">','<form class="form-inline" role="form">',"<span><strong>DATA LIBRARIES</strong></span>",'<span class="library-paginator folder-paginator"></span>','<div class="checkbox toolbar-item logged-dataset-manipulation" style="height: 20px; 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i=t.model.tool_shed.replace(/%2f/g,"/"),a=Galaxy.root+"api/tool_shed/search",o={term:e.term,tool_shed_url:i};r.post(a,o,function(e){var t=c.default.shedParser(e);n(t)})},minLength:3,select:function(n,i){var r=i.item.value,a="repository/s/"+t.model.tool_shed+"/r/"+r;e.history.navigate(a,{trigger:!0,replace:!0})}})},reDraw:function(e){this.$el.empty(),this.initialize(e)},templateCategoryContents:i.template(['<style type="text/css">',".ui-autocomplete { background-color: #fff; }","li.ui-menu-item { list-style-type: none; }","</style>",'<div class="unified-panel-header" id="panel_header" unselectable="on">','<div class="unified-panel-header-inner">Repositories in <%= category.get("name") %></div>','<div class="unified-panel-header-inner" style="position: absolute; right: 5px; top: 0px;"><a href="#/queue">Repository Queue (<%= queue %>)</a></div>',"</div>",'<div class="unified-panel-body" id="list_repositories">','<div id="standard-search" style="height: 2em; margin: 1em;">','<span class="ui-widget" >','<input class="search-box-input" id="search_box" name="search" data-shedurl="<%= tool_shed.replace(/%2f/g, "/") %>" placeholder="Search repositories by name or id" size="60" type="text" />',"</span>","</div>",'<div style="clear: both; margin-top: 1em;">','<table class="grid">','<thead id="grid-table-header">',"<tr>",'<th style="width: 10%;">Owner</th>','<th style="width: 15%;">Name</th>',"<th>Synopsis</th>",'<th style="width: 10%;">Type</th>',"</tr>","</thead>",'<% _.each(category.get("repositories"), function(repository) { %>',"<tr>","<td><%= repository.owner %></td>","<td>",'<div style="float: left; margin-left: 1px;" class="menubutton split">','<a href="#/repository/s/<%= tool_shed %>/r/<%= repository.id %>"><%= repository.name %></a>',"</div>","</td>","<td><%= repository.description %></td>","<td><%= repository.type %></td>","</tr>","<% }); %>","</table>","</div>","</div>"].join(""))});t.default={Category:d}}).call(t,n(2),n(1),n(0))},function(e,t,n){"use strict";(function(e,i,r){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=n(34),s=a(o),l=n(139),c=(a(l),n(5)),d=a(c),u=n(9),h=a(u),f=n(13),p=a(f),g=n(35),m=a(g),_=e.View.extend({el:"#center",initialize:function(e){this.options=i.defaults(this.options||{},this.defaults),this.model=new s.default.RepositoryCollection,this.listenTo(this.model,"sync",this.render);var t=e.tool_shed.replace(/\//g,"%2f");this.model.url+="?tool_shed_url="+t+"&repository_id="+e.repository_id,this.model.tool_shed_url=e.tool_shed.replace(/%2f/g,"/"),this.model.tool_shed=t,this.model.category=e.repository_id,this.model.fetch()},render:function(e){var t=this.templateRepoDetails,n=this.model.models[0];this.options={repository:n.get("repository"),tool_shed:this.model.tool_shed,queue:m.default.queueLength()};var a=Object.keys(this.options.repository.metadata).sort(function(e,t){return parseInt(e.split(":")[0]-t.split(":")[0])}),o={},s=this.options.repository.metadata;a.forEach(function(e){o[e]=s[e]}),this.options.repository.metadata=o,this.options.current_changeset=this.options.current_changeset||a[a.length-1],this.options.current_metadata=this.options.repository.metadata[this.options.current_changeset],this.options.current_metadata.tool_shed_url=this.model.tool_shed_url,this.options.tools=this.options.current_metadata.tools,this.options.repository_dependencies_template=this.templateRepoDependencies,this.options.repository_dependency_template=this.templateRepoDependency,this.options.tps_template_global_select=this.templateGlobalSectionSelect,this.options.tps_template_tool_select=this.templateToolSectionSelect,this.options.tps_select_options=this.templatePanelSelectOptions,this.options.tool_dependencies=n.get("tool_dependencies"),this.options.shed_tool_conf=this.templateShedToolConf({shed_tool_confs:n.get("shed_conf")}),this.options.panel_section_dict=n.get("panel_section_dict"),this.options.api_url=Galaxy.root+"api/tool_shed_repositories/install?async=True",this.options=i.extend(this.options,e),this.$el.html(t(this.options)),this.checkInstalled(this.options.current_metadata),this.bindEvents(),r("#center").css("overflow","auto")},bindEvents:function(){var e=this;r("#changeset").on("change",function(){e.options.current_changeset=r("#changeset").find("option:selected").text(),e.options.current_metadata=e.options.repository.metadata[e.options.current_changeset],e.checkInstalled(e.options.current_metadata),e.reDraw(e.options)}),r("#tool_panel_section_select").on("change",function(){e.tpsSelection()}),r("#install_repository").on("click",function(t){r("#repository_installation");t.preventDefault();var n={};n.repositories=JSON.stringify([[r("#install_repository").attr("data-tsrid"),r("#changeset").find("option:selected").val()]]),n.tool_shed_repository_ids=JSON.stringify([r("#install_repository").attr("data-tsrid")]),n.tool_shed_url=e.model.tool_shed_url,n.install_tool_dependencies=r("#install_tool_dependencies").val(),n.install_repository_dependencies=r("#install_repository_dependencies").val(),n.install_resolver_dependencies=r("#install_resolver_dependencies").val();e.panelSelect(n);n.tool_panel_section=JSON.stringify(e.panelSelect(n)),n.shed_tool_conf=r("select[name='shed_tool_conf']").find("option:selected").val(),n.changeset=r("#changeset").find("option:selected").val();var i=r("#repository_installation").attr("action");e.prepareInstall(n,i)}),r("#queue_install").on("click",function(t){e.options.current_changeset=r("#changeset").find("option:selected").text(),e.options.current_metadata=e.options.repository.metadata[e.options.current_changeset];var n=(e.options.current_changeset,{});i.each(Object.keys(e.options.current_metadata),function(t){n[t]||(n[t]=e.options.current_metadata[t])}),n.install_tool_dependencies=r("#install_tool_dependencies").val(),n.install_repository_dependencies=r("#install_repository_dependencies").val(),n.install_resolver_dependencies=r("#install_resolver_dependencies").val(),n.tool_panel_section=JSON.stringify(e.panelSelect({})),n.shed_tool_conf=r("select[name='shed_tool_conf']").find("option:selected").val(),n.tool_shed_url=e.model.tool_shed_url,"/"==n.tool_shed_url.substr(-1)&&(n.tool_shed_url=n.tool_shed_url.substr(0,n.tool_shed_url.length-1)),m.default.addToQueue(n),e.checkInstalled(n)}),r(".tool_panel_section_picker").on("change",function(){r(this).find("option:selected").val()==r("#tool_panel_section_select").find("option:selected").val()?r(this).attr("default","active"):r(this).removeAttr("default")}),r(function(){r("#repository_dependencies").jstree()}),r(".tool_form").on("click",function(){var t=r(this).attr("data-guid"),n=(r(this).attr("data-clean"),r(this).attr("data-name")),i=r(this).attr("data-desc"),a=e.model.tool_shed_url,o=r("#repository_details").attr("data-tsrid"),s=r("#changeset").find("option:selected").val(),l=Galaxy.root+"api/tool_shed/tool_json",c={guid:t,tool_shed_url:a,tsr_id:o,changeset:s};r.get(l,c,function(e){e.cls="ui-portlet-plain";var t=new p.default(e);d.default.deepeach(e.inputs,function(e){e.type&&-1!=["data","data_collection"].indexOf(e.type)&&(e.type="hidden",e.info="Data input '"+e.name+"' ("+d.default.textify(e.extensions)+")")});var r=new h.default.View,a="<u>"+n+"</u> "+i;r.show({closing_events:!0,title:a,body:t.$el,buttons:{Close:function(){r.hide()}}})})})},checkInstalled:function(e){var t=this,n={name:e.name,owner:e.owner},i=!1;t.repoQueued(e);r.get(Galaxy.root+"api/tool_shed_repositories",n,function(n){for(var a=0;a<n.length;a++){var o=n[a],s=!o.deleted&&!o.uninstalled,l=o.changeset_revision==e.changeset_revision||o.installed_changeset_revision==e.changeset_revision;o.name==e.repository.name&&o.owner==e.repository.owner&&s&&l&&(i=!0),i?(r("#install_repository").prop("disabled",!0),r("#install_repository").val("This revision is already installed")):(r("#install_repository").prop("disabled",!1),r("#install_repository").val("Install this revision"))}t.repoQueued(e)||i?(r("#queue_install").hide(),r("#queue_install").val("This revision is already in the queue")):(r("#queue_install").show(),r("#queue_install").val("Install this revision later"))})},panelSelect:function(e){var t={};return r("#tool_panel_section_select").length?e.tool_panel_section_id=r("#tool_panel_section_select").find("option:selected").val():e.new_tool_panel_section=r("#new_tool_panel_section").val(),r(".tool_panel_section_picker").each(function(){var e=r(this).attr("name"),n=r(this).attr("data-toolguid");t[n]="tool_panel_section_id"===e?{tool_panel_section:r(this).find("option:selected").val(),action:"append"}:{tool_panel_section:r(this).val(),action:"create"}}),t},reDraw:function(e){this.$el.empty(),this.render(e)},repoQueued:function(e){var t=this;if(localStorage.repositories){var n,i=t.queueKey(e);return localStorage.repositories&&(n=JSON.parse(localStorage.repositories)),!(!n||!n.hasOwnProperty(i))}},queueKey:function(e){var t=this.model.tool_shed_url;return"/"==t.substr(-1)&&(t=t.substr(0,t.length-1)),t+"|"+e.repository_id+"|"+e.changeset_revision},tpsSelection:function(){new_tps=r("#tool_panel_section_select").find("option:selected").val(),r('.tool_panel_section_picker[default="active"]').each(function(){r(this).val(new_tps)})},prepareInstall:function(e,t){var n=this;r.post(t,e,function(e){var t=JSON.parse(e);n.doInstall(t)})},doInstall:function(t){var n=Galaxy.root+"admin_toolshed/install_repositories",i=t.repositories,a="status/r/"+i.join("|");r.post(n,t,function(e){console.log("Initializing repository installation succeeded")}),e.history.navigate(a,{trigger:!0,replace:!0})},templateRepoDetails:i.template(['<div class="unified-panel-header" id="panel_header" unselectable="on">','<div class="unified-panel-header-inner">Repository information for <strong><%= repository.name %></strong> from <strong><%= repository.owner %></strong></div>','<div class="unified-panel-header-inner" style="position: absolute; right: 5px; top: 0px;"><a href="#/queue">Repository Queue (<%= queue %>)</a></div>',"</div>",'<div class="unified-panel-body" id="repository_details" data-tsrid="<%= repository.id %>">','<form id="repository_installation" name="install_repository" method="post" action="<%= api_url %>">','<input type="hidden" id="repositories" name="<%= repository.id %>" value="ID" />','<input type="hidden" id="tool_shed_url" name="tool_shed_url" value="<%= tool_shed %>" />','<div class="toolForm">','<div class="toolFormTitle">Changeset</div>','<div class="toolFormBody changeset">','<select id="changeset" name="changeset" style="margin: 5px;">',"<% _.each(Object.keys(repository.metadata), function(changeset) { %>",'<% if (changeset == current_changeset) { var selected = "selected "; } else { var selected = ""; } %>','<option <%= selected %>value="<%= changeset.split(":")[1] %>"><%= changeset %></option>',"<% }); %>","</select>",'<input class="btn btn-primary preview-button" data-tsrid="<%= current_metadata.repository.id %>" type="submit" id="install_repository" name="install_repository" value="Install this revision now" />','<input class="btn btn-primary preview-button" type="button" id="queue_install" name="queue_install" value="Install this revision later" />','<div class="toolParamHelp" style="clear: both;">Please select a revision and review the settings below before installing.</div>',"</div>","</div>","<%= shed_tool_conf %>","<% if (current_metadata.has_repository_dependencies) { %>",'<div class="toolFormTitle">Repository dependencies for <strong id="current_changeset"><%= current_changeset %></strong></div>','<div class="toolFormBody">','<p id="install_repository_dependencies_checkbox">','<input type="checkbox" checked id="install_repository_dependencies" />','<label for="install_repository_dependencies">Install repository dependencies</label>',"</p>","<% current_metadata.repository_dependency_template = repository_dependency_template; %>",'<div class="tables container-table" id="repository_dependencies">','<div class="expandLink">','<a class="toggle_folder" data_target="repository_dependencies_table">',"Repository dependencies &ndash; <em>installation of these additional repositories is required</em>","</a>","</div>","<%= repository_dependencies_template(current_metadata) %>","</div>","</div>","<% } %>","<% if (current_metadata.includes_tool_dependencies) { %>",'<div class="toolFormTitle">Tool dependencies</div>','<div class="toolFormBody">','<p id="install_resolver_dependencies_checkbox">','<input type="checkbox" checked id="install_resolver_dependencies" />','<label for="install_resolver_dependencies">Install resolver dependencies</label>',"</p>",'<p id="install_tool_dependencies_checkbox">','<input type="checkbox" checked id="install_tool_dependencies" />','<label for="install_tool_dependencies">Install tool dependencies</label>',"</p>",'<div class="tables container-table" id="tool_dependencies">','<div class="expandLink">','<a class="toggle_folder" data_target="tool_dependencies_table">',"Tool dependencies &ndash; <em>repository tools require handling of these dependencies</em>","</a>","</div>",'<table class="tables container-table" id="tool_dependencies_table" border="0" cellpadding="2" cellspacing="2" width="100%">',"<thead>",'<tr style="display: table-row;" class="datasetRow" parent="0" id="libraryItem-rt-f9cad7b01a472135">','<th style="padding-left: 40px;">Name</th>',"<th>Version</th>","<th>Type</th>","</tr>","</thead>",'<tbody id="tool_deps">',"<% _.each(tool_dependencies[current_changeset], function(dependency) { %>",'<tr class="datasetRow tool_dependency_row" style="display: table-row;">','<td style="padding-left: 40px;">',"<%= dependency.name %></td>","<td><%= dependency.version %></td>","<td><%= dependency.type %></td>","</tr>","<% }); %>","</tbody>","</table>","</div>","</div>","<% } %>","<% if (current_metadata.includes_tools_for_display_in_tool_panel) { %>",'<div class="toolFormTitle">Tools &ndash; <em>click the name to preview the tool and use the pop-up menu to inspect all metadata</em></div>','<div class="toolFormBody">','<div class="tables container-table" id="tools_toggle">','<table class="tables container-table" id="valid_tools" border="0" cellpadding="2" cellspacing="2" width="100%">',"<thead>",'<tr style="display: table-row;" class="datasetRow" parent="0" id="libraryItem-rt-f9cad7b01a472135">','<th style="padding-left: 40px;">Name</th>',"<th>Description</th>","<th>Version</th>","<th><%= tps_template_global_select({tps: panel_section_dict, tps_select_options: tps_select_options}) %></tr>","</thead>",'<tbody id="tools_in_repo">',"<% _.each(current_metadata.tools, function(tool) { %>",'<tr id="libraryItem-<%= tool.clean %>" class="tool_row" style="display: table-row;" style="width: 15%">','<td style="padding-left: 40px;">','<div id="tool-<%= tool.clean %>" class="menubutton split popup" style="float: left;">','<a class="tool_form view-info" data-toggle="modal" data-target="toolform_<%= tool.clean %>" data-clean="<%= tool.clean %>" data-guid="<%= tool.guid %>" data-name="<%= tool.name %>" data-desc="<%= tool.description %>"><%= tool.name %></a>',"</div>","</td>","<td><%= tool.description %></td>",'<td style="width: 15%"><%= tool.version %></td>','<td style="width: 35%" id="tool_tps_<%= tool.clean %>">',"<%= tps_template_tool_select({tool: tool, tps: panel_section_dict, tps_select_options: tps_select_options}) %>","</td>","</tr>","<% }); %>","</tbody>","</table>","</div>","</div>","<% } %>","</form>","</div>"].join("")),templateRepoDependencies:i.template(['<div class="toolFormTitle">Repository Dependencies</div>','<div class="toolFormBody tables container-table" id="repository_dependencies">',"<ul>","<li>Repository installation requires the following","<% if (has_repository_dependencies) { %>","<% _.each(repository_dependencies, function(dependency) { %>","<% dependency.repository_dependency_template = repository_dependency_template; %>","<%= repository_dependency_template(dependency) %>","<% }); %>","<% } %>","</li>","</ul>","</div>"].join("")),templateRepoDependency:i.template(['<li id="metadata_<%= id %>" class="datasetRow repository_dependency_row">',"Repository <b><%= repository.name %></b> revision <b><%= changeset_revision %></b> owned by <b><%= repository.owner %></b>","<% if (has_repository_dependencies) { %>",'<ul class="child_dependencies">',"<% _.each(repository_dependencies, function(dependency) { %>","<% dependency.repository_dependency_template = repository_dependency_template; %>","<%= repository_dependency_template(dependency) %>","<% }); %>","</ul>","<% } %>","</li>"].join("")),templateShedToolConf:i.template(['<div class="toolFormTitle">Shed tool configuration file:</div>','<div class="toolFormBody">','<div class="form-row">','<select name="shed_tool_conf">',"<% _.each(shed_tool_confs.options, function(conf) { %>",'<option value="<%= conf.value %>"><%= conf.label %></option>',"<% }); %>","</select>",'<div class="toolParamHelp" style="clear: both;">Select the file whose <b>tool_path</b> setting you want used for installing repositories.</div>',"</div>","</div>"].join("")),templateToolDependency:i.template(["<% if (has_repository_dependencies) { %>","<% _.each(repository_dependencies, function(dependency) { %>","<% if (dependency.includes_tool_dependencies) { %>","<% dependency.tool_dependency_template = tool_dependency_template %>","<%= tool_dependency_template(dependency) %>","<% } %>","<% }); %>","<% } %>"].join("")),templateGlobalSectionCreate:i.template(['<div id="tool_panel_section">','<div class="form-row" id="new_tps">','<input id="new_tool_panel_section" name="new_tool_panel_section" type="textfield" value="" size="40"/>','<input class="btn btn-primary" type="button" id="select_existing" value="Select existing" />','<div class="toolParamHelp" style="clear: both;">',"Add a new tool panel section to contain the installed tools (optional).","</div>","</div>","</div>"].join("")),templateGlobalSectionSelect:i.template(['<div id="tool_panel_section">','<div class="toolFormTitle">Tool Panel Section</div>','<div class="toolFormBody">','<div class="tab-pane" id="select_tps">','<select name="<%= name %>" id="<%= tps.id %>">',"<%= tps_select_options({sections: tps.sections}) %>","</select>",'<input class="btn btn-primary" type="button" id="create_new" value="Create new" />','<div class="toolParamHelp" style="clear: both;">',"Select an existing tool panel section to contain the installed tools (optional).","</div>","</div>","</div>","</div>"].join("")),templateToolSectionCreate:i.template(['<div id="new_tps_<%= tool.clean %>" data-clean="<%= tool.clean %>" class="form-row">','<input data-toolguid="<%= tool.guid %>" class="tool_panel_section_picker" size="40" name="new_tool_panel_section" id="new_tool_panel_section_<%= tool.clean %>" type="text">','<input id="per_tool_select_<%= tool.clean %>" class="btn btn-primary" data-toolguid="<%= tool.guid %>" value="Select existing" id="select_existing_<%= tool.clean %>" type="button">',"</div>"].join("")),templateToolSectionSelect:i.template(['<div id="select_tps_<%= tool.clean %>" data-clean="<%= tool.clean %>" class="tps_creator">','<select default="active" style="width: 30em;" data-toolguid="<%= tool.guid %>" class="tool_panel_section_picker" name="tool_panel_section_id" id="tool_panel_section_select_<%= tool.clean %>">',"<%= tps_select_options({sections: tps.sections}) %>","</select>",'<input id="per_tool_create_<%= tool.clean %>" data-clean="<%= tool.clean %>" class="btn btn-primary create-tps-button" data-toolguid="<%= tool.guid %>" value="Create new" id="create_new_<%= tool.clean %>" type="button">','<div style="clear: both;" class="toolParamHelp"></div>',"</div>"].join("")),templatePanelSelectOptions:i.template(["<% _.each(sections, function(section) { %>",'<option value="<%= section.id %>"><%= section.name %></option>',"<% }); %>"].join(""))});t.default={RepoDetails:_}}).call(t,n(2),n(1),n(0))},function(e,t,n){"use strict";(function(e,i,r){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=n(3),s=a(o),l=n(34),c=a(l),d=n(35),u=a(d),h=e.View.extend({el:"#center",defaults:[{}],initialize:function(e){var t=this;this.model=new c.default.RepoQueue,this.listenTo(this.model,"sync",this.render),this.model.fetch(),t.render()},render:function(e){var t=this,n=t.templateRepoQueue,r=t.model.models;t.$el.html(n({title:(0,s.default)("Repository Installation Queue"),repositories:r,queue:u.default.queueLength()})),i("#center").css("overflow","auto"),t.bindEvents()},bindEvents:function(){var t=this;i(".install_one").on("click",function(){var e=t.loadFromQueue(i(this).attr("data-repokey"));t.installFromQueue(e,i(this).attr("data-repokey"))}),i(".remove_one").on("click",function(){var e=i(this).attr("data-repokey"),t=JSON.parse(localStorage.repositories);if(t.hasOwnProperty(e)){var n=t[e].repository.id;delete t[e],i("#queued_repository_"+n).remove()}localStorage.repositories=JSON.stringify(t)}),i("#clear_queue").on("click",function(){localStorage.repositories="{}"}),i("#from_workflow").on("click",function(){e.history.navigate("workflows",{trigger:!0,replace:!0})})},installFromQueue:function(t,n){var r=Object();r.install_tool_dependencies=t.install_tool_dependencies,r.install_repository_dependencies=t.install_repository_dependencies,r.install_resolver_dependencies=t.install_resolver_dependencies,r.tool_panel_section=t.tool_panel_section,r.shed_tool_conf=t.shed_tool_conf,r.repositories=JSON.stringify([[t.repository.id,t.changeset_revision]]),r.tool_shed_repository_ids=JSON.stringify([t.repository.id]),r.tool_shed_url=n.split("|")[0],r.changeset=t.changeset_revision;var a=Galaxy.root+"api/tool_shed_repositories/install?async=True";if(i("#queued_repository_"+t.repository.id).remove(),localStorage.repositories){void 0===n&&(n=u.default.queueKey(t));var o=JSON.parse(localStorage.repositories);o.hasOwnProperty(n)&&(delete o[n],localStorage.repositories=JSON.stringify(o))}i.post(a,r,function(t){var n=JSON.parse(t),r=n.repositories,a="status/r/"+r.join("|");i.post(Galaxy.root+"admin_toolshed/install_repositories",n,function(e){console.log("Initializing repository installation succeeded")}),e.history.navigate(a,{trigger:!0,replace:!0})})},loadFromQueue:function(e){var t=JSON.parse(localStorage.repositories);if(t.hasOwnProperty(e))return t[e]},reDraw:function(e){this.$el.empty(),this.initialize(e),this.model.fetch(),this.render(e)},templateRepoQueue:r.template(['<div class="unified-panel-header" id="panel_header" unselectable="on">','<div class="unified-panel-header-inner"><%= title %></div>','<div class="unified-panel-header-inner" style="position: absolute; right: 5px; top: 0px;"><a href="#/queue">Repository Queue (<%= queue %>)</a></div>',"</div>",'<div class="tab-pane" id="panel_header" id="repository_queue">','<table id="queued_repositories" class="grid" border="0" cellpadding="2" cellspacing="2" width="100%">','<thead id="grid-table-header">',"<tr>",'<th class="datasetRow">Name</th>','<th class="datasetRow">Owner</th>','<th class="datasetRow">Revision</th>','<th class="datasetRow">ToolShed</th>','<th class="datasetRow">Install</th>','<th 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h.DIALOG_EMBED_PAGE:g=r(h.ITEM_PAGE);break;case h.DIALOG_EMBED_VISUALIZATION:g=r(h.ITEM_VISUALIZATION)}var m=new d.default({url_base:g.list_ajax_url,embedded:!0});Galaxy.modal.show({title:"Insert Link to "+g.singular,body:e("<div/>").append(m.$el).append(e("<div/>").append('<input id="make-importable" type="checkbox" checked/>').append("Make the selected "+g.plural.toLowerCase()+" accessible so that they can viewed by everyone.")),closing_events:!0,buttons:{Embed:function(){var t=!1;null!=e("#make-importable:checked").val()&&(t=!0),m.$("input[name=id]:checked").each(function(){var n=e(this).val(),i=e("label[for='"+n+"']:first").text();t&&a(g.controller,n,g.singular);var r=g.iclass+"-"+n,o=["<div id='",r,"' class='embedded-item ",g.singular.toLowerCase()," placeholder'>","<p class='title'>","Embedded Galaxy ",g.singular," '",i,"'","</p>","<p class='content'>","[Do not edit this block; Galaxy will fill it in with the annotated ",g.singular.toLowerCase()," when it is 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t=0;t<e.length;++t)WYMeditor.console[e[t]]=function(){}}}(),jQuery.extend(WYMeditor,{VERSION:"0.5-rc1",INSTANCES:[],STRINGS:[],SKINS:[],NAME:"name",INDEX:"{Wym_Index}",WYM_INDEX:"wym_index",BASE_PATH:"{Wym_Base_Path}",CSS_PATH:"{Wym_Css_Path}",WYM_PATH:"{Wym_Wym_Path}",SKINS_DEFAULT_PATH:"skins/",SKINS_DEFAULT_CSS:"skin.css",SKINS_DEFAULT_JS:"skin.js",LANG_DEFAULT_PATH:"lang/",IFRAME_BASE_PATH:"{Wym_Iframe_Base_Path}",IFRAME_DEFAULT:"iframe/default/",JQUERY_PATH:"{Wym_Jquery_Path}",DIRECTION:"{Wym_Direction}",LOGO:"{Wym_Logo}",TOOLS:"{Wym_Tools}",TOOLS_ITEMS:"{Wym_Tools_Items}",TOOL_NAME:"{Wym_Tool_Name}",TOOL_TITLE:"{Wym_Tool_Title}",TOOL_CLASS:"{Wym_Tool_Class}",CLASSES:"{Wym_Classes}",CLASSES_ITEMS:"{Wym_Classes_Items}",CLASS_NAME:"{Wym_Class_Name}",CLASS_TITLE:"{Wym_Class_Title}",CONTAINERS:"{Wym_Containers}",CONTAINERS_ITEMS:"{Wym_Containers_Items}",CONTAINER_NAME:"{Wym_Container_Name}",CONTAINER_TITLE:"{Wym_Containers_Title}",CONTAINER_CLASS:"{Wym_Container_Class}",HTML:"{Wym_Html}",IFRAME:"{Wym_Iframe}",STATUS:"{Wym_Status}",DIALOG_TITLE:"{Wym_Dialog_Title}",DIALOG_BODY:"{Wym_Dialog_Body}",STRING:"string",BODY:"body",DIV:"div",P:"p",H1:"h1",H2:"h2",H3:"h3",H4:"h4",H5:"h5",H6:"h6",PRE:"pre",BLOCKQUOTE:"blockquote",A:"a",BR:"br",IMG:"img",TABLE:"table",TD:"td",TH:"th",UL:"ul",OL:"ol",LI:"li",CLASS:"class",HREF:"href",SRC:"src",TITLE:"title",ALT:"alt",DIALOG_LINK:"Link",DIALOG_IMAGE:"Image",DIALOG_TABLE:"Table",DIALOG_PASTE:"Paste_From_Word",BOLD:"Bold",ITALIC:"Italic",CREATE_LINK:"CreateLink",INSERT_IMAGE:"InsertImage",INSERT_TABLE:"InsertTable",INSERT_HTML:"InsertHTML",PASTE:"Paste",INDENT:"Indent",OUTDENT:"Outdent",TOGGLE_HTML:"ToggleHtml",FORMAT_BLOCK:"FormatBlock",PREVIEW:"Preview",UNLINK:"Unlink",INSERT_UNORDEREDLIST:"InsertUnorderedList",INSERT_ORDEREDLIST:"InsertOrderedList",MAIN_CONTAINERS:new Array("p","h1","h2","h3","h4","h5","h6","pre","blockquote"),BLOCKS:new Array("address","blockquote","div","dl","fieldset","form","h1","h2","h3","h4","h5","h6","hr","noscript","ol","p","pre","table","ul","dd","dt","li","tbody","td","tfoot","th","thead","tr"),KEY:{BACKSPACE:8,ENTER:13,END:35,HOME:36,LEFT:37,UP:38,RIGHT:39,DOWN:40,CURSOR:new Array(37,38,39,40),DELETE:46},NODE:{ELEMENT:1,ATTRIBUTE:2,TEXT:3},editor:function(e,t){this._index=WYMeditor.INSTANCES.push(this)-1,this._element=e,this._options=t,this._html=jQuery(e).val(),this._options.html&&(this._html=this._options.html),this._options.basePath=this._options.basePath||this.computeBasePath(),this._options.skinPath=this._options.skinPath||this._options.basePath+WYMeditor.SKINS_DEFAULT_PATH+this._options.skin+"/",this._options.wymPath=this._options.wymPath||this.computeWymPath(),this._options.langPath=this._options.langPath||this._options.basePath+WYMeditor.LANG_DEFAULT_PATH,this._options.iframeBasePath=this._options.iframeBasePath||this._options.basePath+WYMeditor.IFRAME_DEFAULT,this._options.jQueryPath=this._options.jQueryPath||this.computeJqueryPath(),this.init()}}),jQuery.fn.wymeditor=function(e){return e=jQuery.extend({html:"",basePath:!1,skinPath:!1,wymPath:!1,iframeBasePath:!1,jQueryPath:!1,styles:!1,stylesheet:!1,skin:"default",initSkin:!0,loadSkin:!0,lang:"en",direction:"ltr",boxHtml:"<div class='wym_box'><div class='wym_area_top'>"+WYMeditor.TOOLS+"</div><div class='wym_area_left'></div><div class='wym_area_right'>"+WYMeditor.CONTAINERS+WYMeditor.CLASSES+"</div><div class='wym_area_main'>"+WYMeditor.HTML+WYMeditor.IFRAME+WYMeditor.STATUS+"</div><div class='wym_area_bottom'>"+WYMeditor.LOGO+"</div></div>",logoHtml:"<a class='wym_wymeditor_link' href='http://www.wymeditor.org/'>WYMeditor</a>",iframeHtml:"<div class='wym_iframe wym_section'><iframe src='/page/get_editor_iframe' onload='this.contentWindow.parent.WYMeditor.INSTANCES["+WYMeditor.INDEX+"].initIframe(this)'></iframe></div>",editorStyles:[],toolsHtml:"<div class='wym_tools wym_section'><h2>{Tools}</h2><ul>"+WYMeditor.TOOLS_ITEMS+"</ul></div>",toolsItemHtml:"<li class='"+WYMeditor.TOOL_CLASS+"'><a href='#' name='"+WYMeditor.TOOL_NAME+"' title='"+WYMeditor.TOOL_TITLE+"'>"+WYMeditor.TOOL_TITLE+"</a></li>",toolsItems:[{name:"Bold",title:"Strong",css:"wym_tools_strong"},{name:"Italic",title:"Emphasis",css:"wym_tools_emphasis"},{name:"Superscript",title:"Superscript",css:"wym_tools_superscript"},{name:"Subscript",title:"Subscript",css:"wym_tools_subscript"},{name:"InsertOrderedList",title:"Ordered_List",css:"wym_tools_ordered_list"},{name:"InsertUnorderedList",title:"Unordered_List",css:"wym_tools_unordered_list"},{name:"Indent",title:"Indent",css:"wym_tools_indent"},{name:"Outdent",title:"Outdent",css:"wym_tools_outdent"},{name:"Undo",title:"Undo",css:"wym_tools_undo"},{name:"Redo",title:"Redo",css:"wym_tools_redo"},{name:"CreateLink",title:"Link",css:"wym_tools_link"},{name:"Unlink",title:"Unlink",css:"wym_tools_unlink"},{name:"InsertImage",title:"Image",css:"wym_tools_image"},{name:"InsertTable",title:"Table",css:"wym_tools_table"},{name:"Paste",title:"Paste_From_Word",css:"wym_tools_paste"},{name:"ToggleHtml",title:"HTML",css:"wym_tools_html"},{name:"Preview",title:"Preview",css:"wym_tools_preview"}],containersHtml:"<div class='wym_containers wym_section'><h2>{Containers}</h2><ul>"+WYMeditor.CONTAINERS_ITEMS+"</ul></div>",containersItemHtml:"<li class='"+WYMeditor.CONTAINER_CLASS+"'><a href='#' name='"+WYMeditor.CONTAINER_NAME+"'>"+WYMeditor.CONTAINER_TITLE+"</a></li>",containersItems:[{name:"P",title:"Paragraph",css:"wym_containers_p"},{name:"H1",title:"Heading_1",css:"wym_containers_h1"},{name:"H2",title:"Heading_2",css:"wym_containers_h2"},{name:"H3",title:"Heading_3",css:"wym_containers_h3"},{name:"H4",title:"Heading_4",css:"wym_containers_h4"},{name:"H5",title:"Heading_5",css:"wym_containers_h5"},{name:"H6",title:"Heading_6",css:"wym_containers_h6"},{name:"PRE",title:"Preformatted",css:"wym_containers_pre"},{name:"BLOCKQUOTE",title:"Blockquote",css:"wym_containers_blockquote"},{name:"TH",title:"Table_Header",css:"wym_containers_th"}],classesHtml:"<div class='wym_classes wym_section'><h2>{Classes}</h2><ul>"+WYMeditor.CLASSES_ITEMS+"</ul></div>",classesItemHtml:"<li><a href='#' name='"+WYMeditor.CLASS_NAME+"'>"+WYMeditor.CLASS_TITLE+"</a></li>",classesItems:[],statusHtml:"<div class='wym_status wym_section'><h2>{Status}</h2></div>",htmlHtml:"<div class='wym_html wym_section'><h2>{Source_Code}</h2><textarea class='wym_html_val'></textarea></div>",boxSelector:".wym_box",toolsSelector:".wym_tools",toolsListSelector:" ul",containersSelector:".wym_containers",classesSelector:".wym_classes",htmlSelector:".wym_html",iframeSelector:".wym_iframe iframe",iframeBodySelector:".wym_iframe",statusSelector:".wym_status",toolSelector:".wym_tools a",containerSelector:".wym_containers a",classSelector:".wym_classes a",htmlValSelector:".wym_html_val",hrefSelector:".wym_href",srcSelector:".wym_src",titleSelector:".wym_title",altSelector:".wym_alt",textSelector:".wym_text",rowsSelector:".wym_rows",colsSelector:".wym_cols",captionSelector:".wym_caption",summarySelector:".wym_summary",submitSelector:".wym_submit",cancelSelector:".wym_cancel",previewSelector:"",dialogTypeSelector:".wym_dialog_type",dialogLinkSelector:".wym_dialog_link",dialogImageSelector:".wym_dialog_image",dialogTableSelector:".wym_dialog_table",dialogPasteSelector:".wym_dialog_paste",dialogPreviewSelector:".wym_dialog_preview",updateSelector:".wymupdate",updateEvent:"click",dialogFeatures:"menubar=no,titlebar=no,toolbar=no,resizable=no,width=560,height=300,top=0,left=0",dialogFeaturesPreview:"menubar=no,titlebar=no,toolbar=no,resizable=no,scrollbars=yes,width=560,height=300,top=0,left=0",dialogHtml:"<!DOCTYPE html PUBLIC '-//W3C//DTD XHTML 1.0 Strict//EN' 'http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd'><html dir='"+WYMeditor.DIRECTION+"'><head><link rel='stylesheet' type='text/css' media='screen' href='"+WYMeditor.CSS_PATH+"' /><title>"+WYMeditor.DIALOG_TITLE+"</title><script type='text/javascript' src='"+WYMeditor.JQUERY_PATH+"'><\/script><script type='text/javascript' src='"+WYMeditor.WYM_PATH+"'><\/script></head>"+WYMeditor.DIALOG_BODY+"</html>",dialogLinkHtml:"<body class='wym_dialog wym_dialog_link' onload='WYMeditor.INIT_DIALOG("+WYMeditor.INDEX+")'><form><fieldset><input type='hidden' class='wym_dialog_type' value='"+WYMeditor.DIALOG_LINK+"' /><legend>{Link}</legend><div class='row'><label>{URL}</label><input type='text' class='wym_href' value='' size='40' /></div><div class='row'><label>{Title}</label><input type='text' class='wym_title' value='' size='40' /></div><div class='row row-indent'><input class='wym_submit' type='button' value='{Submit}' /><input class='wym_cancel' type='button'value='{Cancel}' /></div></fieldset></form></body>",dialogImageHtml:"<body class='wym_dialog wym_dialog_image' onload='WYMeditor.INIT_DIALOG("+WYMeditor.INDEX+")'><form><fieldset><input type='hidden' class='wym_dialog_type' value='"+WYMeditor.DIALOG_IMAGE+"' /><legend>{Image}</legend><div class='row'><label>{URL}</label><input type='text' class='wym_src' value='' size='40' /></div><div class='row'><label>{Alternative_Text}</label><input type='text' class='wym_alt' value='' size='40' /></div><div class='row'><label>{Title}</label><input type='text' class='wym_title' value='' size='40' /></div><div class='row row-indent'><input class='wym_submit' type='button' value='{Submit}' /><input class='wym_cancel' type='button'value='{Cancel}' /></div></fieldset></form></body>",dialogTableHtml:"<body class='wym_dialog wym_dialog_table' onload='WYMeditor.INIT_DIALOG("+WYMeditor.INDEX+")'><form><fieldset><input type='hidden' class='wym_dialog_type' value='"+WYMeditor.DIALOG_TABLE+"' /><legend>{Table}</legend><div class='row'><label>{Caption}</label><input type='text' class='wym_caption' value='' size='40' /></div><div class='row'><label>{Summary}</label><input type='text' class='wym_summary' value='' size='40' /></div><div class='row'><label>{Number_Of_Rows}</label><input type='text' class='wym_rows' value='3' size='3' /></div><div class='row'><label>{Number_Of_Cols}</label><input type='text' class='wym_cols' value='2' size='3' /></div><div class='row row-indent'><input class='wym_submit' type='button' value='{Submit}' /><input class='wym_cancel' type='button'value='{Cancel}' /></div></fieldset></form></body>",dialogPasteHtml:"<body class='wym_dialog wym_dialog_paste' onload='WYMeditor.INIT_DIALOG("+WYMeditor.INDEX+")'><form><input type='hidden' class='wym_dialog_type' value='"+WYMeditor.DIALOG_PASTE+"' /><fieldset><legend>{Paste_From_Word}</legend><div class='row'><textarea class='wym_text' rows='10' cols='50'></textarea></div><div class='row'><input class='wym_submit' type='button' value='{Submit}' /><input class='wym_cancel' type='button'value='{Cancel}' /></div></fieldset></form></body>",dialogPreviewHtml:"<body class='wym_dialog wym_dialog_preview' onload='WYMeditor.INIT_DIALOG("+WYMeditor.INDEX+")'></body>",dialogStyles:[],stringDelimiterLeft:"{",stringDelimiterRight:"}",preInit:null,preBind:null,postInit:null,preInitDialog:null,postInitDialog:null},e),this.each(function(){new WYMeditor.editor(jQuery(this),e)})},jQuery.extend({wymeditors:function(e){return WYMeditor.INSTANCES[e]}}),WYMeditor.editor.prototype.init=function(){if(jQuery.browser.msie)var WymClass=new WYMeditor.WymClassExplorer(this);else if(jQuery.browser.mozilla)var WymClass=new WYMeditor.WymClassMozilla(this);else if(jQuery.browser.opera)var WymClass=new WYMeditor.WymClassOpera(this);else if(jQuery.browser.safari||jQuery.browser.chrome)var WymClass=new WYMeditor.WymClassSafari(this);if(WymClass){jQuery.isFunction(this._options.preInit)&&this._options.preInit(this);var SaxListener=new WYMeditor.XhtmlSaxListener;jQuery.extend(SaxListener,WymClass),this.parser=new WYMeditor.XhtmlParser(SaxListener),(this._options.styles||this._options.stylesheet)&&this.configureEditorUsingRawCss(),this.helper=new WYMeditor.XmlHelper;for(var prop in WymClass)this[prop]=WymClass[prop];this._box=jQuery(this._element).hide().after(this._options.boxHtml).next().addClass("wym_box_"+this._index),jQuery.isFunction(jQuery.fn.data)&&(jQuery.data(this._box.get(0),WYMeditor.WYM_INDEX,this._index),jQuery.data(this._element.get(0),WYMeditor.WYM_INDEX,this._index));var h=WYMeditor.Helper,iframeHtml=this._options.iframeHtml;iframeHtml=h.replaceAll(iframeHtml,WYMeditor.INDEX,this._index),iframeHtml=h.replaceAll(iframeHtml,WYMeditor.IFRAME_BASE_PATH,this._options.iframeBasePath);var boxHtml=jQuery(this._box).html();boxHtml=h.replaceAll(boxHtml,WYMeditor.LOGO,this._options.logoHtml),boxHtml=h.replaceAll(boxHtml,WYMeditor.TOOLS,this._options.toolsHtml),boxHtml=h.replaceAll(boxHtml,WYMeditor.CONTAINERS,this._options.containersHtml),boxHtml=h.replaceAll(boxHtml,WYMeditor.CLASSES,this._options.classesHtml),boxHtml=h.replaceAll(boxHtml,WYMeditor.HTML,this._options.htmlHtml),boxHtml=h.replaceAll(boxHtml,WYMeditor.IFRAME,iframeHtml),boxHtml=h.replaceAll(boxHtml,WYMeditor.STATUS,this._options.statusHtml);for(var aTools=eval(this._options.toolsItems),sTools="",i=0;i<aTools.length;i++){var oTool=aTools[i];if(oTool.name&&oTool.title)var sTool=this._options.toolsItemHtml;var sTool=h.replaceAll(sTool,WYMeditor.TOOL_NAME,oTool.name);sTool=h.replaceAll(sTool,WYMeditor.TOOL_TITLE,this._options.stringDelimiterLeft+oTool.title+this._options.stringDelimiterRight),sTool=h.replaceAll(sTool,WYMeditor.TOOL_CLASS,oTool.css),sTools+=sTool}boxHtml=h.replaceAll(boxHtml,WYMeditor.TOOLS_ITEMS,sTools);for(var aClasses=eval(this._options.classesItems),sClasses="",i=0;i<aClasses.length;i++){var oClass=aClasses[i];if(oClass.name&&oClass.title)var sClass=this._options.classesItemHtml;sClass=h.replaceAll(sClass,WYMeditor.CLASS_NAME,oClass.name),sClass=h.replaceAll(sClass,WYMeditor.CLASS_TITLE,oClass.title),sClasses+=sClass}boxHtml=h.replaceAll(boxHtml,WYMeditor.CLASSES_ITEMS,sClasses);for(var aContainers=eval(this._options.containersItems),sContainers="",i=0;i<aContainers.length;i++){var oContainer=aContainers[i];if(oContainer.name&&oContainer.title)var sContainer=this._options.containersItemHtml;sContainer=h.replaceAll(sContainer,WYMeditor.CONTAINER_NAME,oContainer.name),sContainer=h.replaceAll(sContainer,WYMeditor.CONTAINER_TITLE,this._options.stringDelimiterLeft+oContainer.title+this._options.stringDelimiterRight),sContainer=h.replaceAll(sContainer,WYMeditor.CONTAINER_CLASS,oContainer.css),sContainers+=sContainer}boxHtml=h.replaceAll(boxHtml,WYMeditor.CONTAINERS_ITEMS,sContainers),boxHtml=this.replaceStrings(boxHtml),jQuery(this._box).html(boxHtml),jQuery(this._box).find(this._options.htmlSelector).hide(),this.loadSkin()}},WYMeditor.editor.prototype.bindEvents=function(){var wym=this;jQuery(this._box).find(this._options.toolSelector).click(function(){return wym._iframe.contentWindow.focus(),wym.exec(jQuery(this).attr(WYMeditor.NAME)),!1}),jQuery(this._box).find(this._options.containerSelector).click(function(){return wym.container(jQuery(this).attr(WYMeditor.NAME)),!1}),jQuery(this._box).find(this._options.htmlValSelector).keyup(function(){jQuery(wym._doc.body).html(jQuery(this).val())}).focus(function(){jQuery(this).toggleClass("hasfocus")}).blur(function(){jQuery(this).toggleClass("hasfocus")}),jQuery(this._box).find(this._options.classSelector).click(function(){var aClasses=eval(wym._options.classesItems),sName=jQuery(this).attr(WYMeditor.NAME),oClass=WYMeditor.Helper.findByName(aClasses,sName);if(oClass){var jqexpr=oClass.expr;wym.toggleClass(sName,jqexpr)}return wym._iframe.contentWindow.focus(),!1}),jQuery(this._options.updateSelector).bind(this._options.updateEvent,function(){wym.update()})},WYMeditor.editor.prototype.ready=function(){return null!=this._doc},WYMeditor.editor.prototype.box=function(){return this._box},WYMeditor.editor.prototype.html=function(e){if("string"!=typeof e)return jQuery(this._doc.body).html();jQuery(this._doc.body).html(e)},WYMeditor.editor.prototype.xhtml=function(){return this.parser.parse(this.html())},WYMeditor.editor.prototype.exec=function(e){switch(e){case WYMeditor.CREATE_LINK:(this.container()||this._selected_image)&&this.dialog(WYMeditor.DIALOG_LINK);break;case WYMeditor.INSERT_IMAGE:this.dialog(WYMeditor.DIALOG_IMAGE);break;case WYMeditor.INSERT_TABLE:this.dialog(WYMeditor.DIALOG_TABLE);break;case WYMeditor.PASTE:this.dialog(WYMeditor.DIALOG_PASTE);break;case WYMeditor.TOGGLE_HTML:this.update(),this.toggleHtml(),jQuery(this._box).find(this._options.htmlSelector).is(":visible")||this.listen();break;case WYMeditor.PREVIEW:this.dialog(WYMeditor.PREVIEW,this._options.dialogFeaturesPreview);break;default:this._exec(e)}},WYMeditor.editor.prototype.container=function(e){if(!e)return this.selected();var t=null;if(e.toLowerCase()==WYMeditor.TH){switch(t=this.container(),t.tagName.toLowerCase()){case WYMeditor.TD:case WYMeditor.TH:break;default:var n=new Array(WYMeditor.TD,WYMeditor.TH);t=this.findUp(this.container(),n)}null!=t&&(e=t.tagName.toLowerCase()==WYMeditor.TD?WYMeditor.TH:WYMeditor.TD,this.switchTo(t,e),this.update())}else{var n=new Array(WYMeditor.P,WYMeditor.H1,WYMeditor.H2,WYMeditor.H3,WYMeditor.H4,WYMeditor.H5,WYMeditor.H6,WYMeditor.PRE,WYMeditor.BLOCKQUOTE);if(t=this.findUp(this.container(),n)){var i=null;if(e.toLowerCase()==WYMeditor.BLOCKQUOTE){var r=this.findUp(this.container(),WYMeditor.BLOCKQUOTE);if(null==r)i=this._doc.createElement(e),t.parentNode.insertBefore(i,t),i.appendChild(t),this.setFocusToNode(i.firstChild);else{var a=r.childNodes,o=a.length,s=null;o>0&&(s=a.item(0));for(var l=0;l<o;l++)r.parentNode.insertBefore(a.item(0),r);r.parentNode.removeChild(r),s&&this.setFocusToNode(s)}}else this.switchTo(t,e);this.update()}}},WYMeditor.editor.prototype.toggleClass=function(e,t){var n=this._selected_image?this._selected_image:jQuery(this.selected());n=jQuery(n).parentsOrSelf(t),jQuery(n).toggleClass(e),jQuery(n).attr(WYMeditor.CLASS)||jQuery(n).removeAttr(this._class)},WYMeditor.editor.prototype.findUp=function(e,t){if(e){var n=e.tagName.toLowerCase();if(typeof t==WYMeditor.STRING)for(;n!=t&&n!=WYMeditor.BODY;)e=e.parentNode,n=e.tagName.toLowerCase();else for(var i=!1;!i&&n!=WYMeditor.BODY;){for(var r=0;r<t.length;r++)if(n==t[r]){i=!0;break}i||(e=e.parentNode,n=e.tagName.toLowerCase())}return n!=WYMeditor.BODY?e:null}return null},WYMeditor.editor.prototype.switchTo=function(e,t){var n=this._doc.createElement(t),i=jQuery(e).html();e.parentNode.replaceChild(n,e),jQuery(n).html(i),this.setFocusToNode(n)},WYMeditor.editor.prototype.replaceStrings=function(sVal){if(!WYMeditor.STRINGS[this._options.lang])try{eval(jQuery.ajax({url:this._options.langPath+this._options.lang+".js",async:!1}).responseText)}catch(e){return WYMeditor.console.error("WYMeditor: error while parsing language file."),sVal}for(var key in WYMeditor.STRINGS[this._options.lang])sVal=WYMeditor.Helper.replaceAll(sVal,this._options.stringDelimiterLeft+key+this._options.stringDelimiterRight,WYMeditor.STRINGS[this._options.lang][key]);return sVal},WYMeditor.editor.prototype.encloseString=function(e){return this._options.stringDelimiterLeft+e+this._options.stringDelimiterRight},WYMeditor.editor.prototype.status=function(e){jQuery(this._box).find(this._options.statusSelector).html(e)},WYMeditor.editor.prototype.update=function(){var e=this.xhtml();jQuery(this._element).val(e),jQuery(this._box).find(this._options.htmlValSelector).not(".hasfocus").val(e)},WYMeditor.editor.prototype.dialog=function(e,t,n){var i=t||this._wym._options.dialogFeatures,r=window.open("","dialog",i);if(r){var a="";switch(e){case WYMeditor.DIALOG_LINK:a=this._options.dialogLinkHtml;break;case WYMeditor.DIALOG_IMAGE:a=this._options.dialogImageHtml;break;case WYMeditor.DIALOG_TABLE:a=this._options.dialogTableHtml;break;case WYMeditor.DIALOG_PASTE:a=this._options.dialogPasteHtml;break;case WYMeditor.PREVIEW:a=this._options.dialogPreviewHtml;break;default:a=n}var o=WYMeditor.Helper,s=this._options.dialogHtml;s=o.replaceAll(s,WYMeditor.BASE_PATH,this._options.basePath),s=o.replaceAll(s,WYMeditor.DIRECTION,this._options.direction),s=o.replaceAll(s,WYMeditor.CSS_PATH,this._options.skinPath+WYMeditor.SKINS_DEFAULT_CSS),s=o.replaceAll(s,WYMeditor.WYM_PATH,this._options.wymPath),s=o.replaceAll(s,WYMeditor.JQUERY_PATH,this._options.jQueryPath),s=o.replaceAll(s,WYMeditor.DIALOG_TITLE,this.encloseString(e)),s=o.replaceAll(s,WYMeditor.DIALOG_BODY,a),s=o.replaceAll(s,WYMeditor.INDEX,this._index),s=this.replaceStrings(s);var l=r.document;l.write(s),l.close()}},WYMeditor.editor.prototype.toggleHtml=function(){jQuery(this._box).find(this._options.htmlSelector).toggle()},WYMeditor.editor.prototype.uniqueStamp=function(){return"wym-"+(new Date).getTime()},WYMeditor.editor.prototype.paste=function(e){var t,n=this.selected(),i=e.split(this._newLine+this._newLine),r=new RegExp(this._newLine,"g");if(n&&n.tagName.toLowerCase()!=WYMeditor.BODY)for(x=i.length-1;x>=0;x--)t=i[x],t=t.replace(r,"<br />"),jQuery(n).after("<p>"+t+"</p>");else for(x=0;x<i.length;x++)t=i[x],t=t.replace(r,"<br />"),jQuery(this._doc.body).append("<p>"+t+"</p>")},WYMeditor.editor.prototype.insert=function(e){null!=this._iframe.contentWindow.getSelection().focusNode?this._exec(WYMeditor.INSERT_HTML,e):this.paste(e)},WYMeditor.editor.prototype.wrap=function(e,t){null!=this._iframe.contentWindow.getSelection().focusNode&&this._exec(WYMeditor.INSERT_HTML,e+this._iframe.contentWindow.getSelection().toString()+t)},WYMeditor.editor.prototype.unwrap=function(){null!=this._iframe.contentWindow.getSelection().focusNode&&this._exec(WYMeditor.INSERT_HTML,this._iframe.contentWindow.getSelection().toString())},WYMeditor.editor.prototype.addCssRules=function(e,t){var n=e.styleSheets[0];if(n)for(var i=0;i<t.length;i++){var r=t[i];r.name&&r.css&&this.addCssRule(n,r)}},WYMeditor.editor.prototype.computeBasePath=function(){return jQuery(jQuery.grep(jQuery("script"),function(e){return e.src&&e.src.match(/jquery\.wymeditor(\.pack|\.min|\.packed)?\.js(\?.*)?$/)})).attr("src").replace(/jquery\.wymeditor(\.pack|\.min|\.packed)?\.js(\?.*)?$/,"")},WYMeditor.editor.prototype.computeWymPath=function(){return jQuery(jQuery.grep(jQuery("script"),function(e){return e.src&&e.src.match(/jquery\.wymeditor(\.pack|\.min|\.packed)?\.js(\?.*)?$/)})).attr("src")},WYMeditor.editor.prototype.computeJqueryPath=function(){return jQuery(jQuery.grep(jQuery("script"),function(e){return e.src&&e.src.match(/jquery(-(.*)){0,1}(\.pack|\.min|\.packed)?\.js(\?.*)?$/)})).attr("src")},WYMeditor.editor.prototype.computeCssPath=function(){return jQuery(jQuery.grep(jQuery("link"),function(e){return e.href&&e.href.match(/wymeditor\/skins\/(.*)screen\.css(\?.*)?$/)})).attr("href")},WYMeditor.editor.prototype.configureEditorUsingRawCss=function(){var e=new WYMeditor.WymCssParser;this._options.stylesheet?e.parse(jQuery.ajax({url:this._options.stylesheet,async:!1}).responseText):e.parse(this._options.styles,!1),0==this._options.classesItems.length&&(this._options.classesItems=e.css_settings.classesItems),0==this._options.editorStyles.length&&(this._options.editorStyles=e.css_settings.editorStyles),0==this._options.dialogStyles.length&&(this._options.dialogStyles=e.css_settings.dialogStyles)},WYMeditor.editor.prototype.listen=function(){jQuery(this._doc.body).bind("mousedown",this.mousedown);for(var e=this._doc.body.getElementsByTagName("img"),t=0;t<e.length;t++)jQuery(e[t]).bind("mousedown",this.mousedown)},WYMeditor.editor.prototype.mousedown=function(e){WYMeditor.INSTANCES[this.ownerDocument.title]._selected_image=this.tagName.toLowerCase()==WYMeditor.IMG?this:null,e.stopPropagation()},WYMeditor.loadCss=function(e){var t=document.createElement("link");t.rel="stylesheet",t.href=e,jQuery("head").get(0).appendChild(t)},WYMeditor.editor.prototype.loadSkin=function(){if(this._options.loadSkin&&!WYMeditor.SKINS[this._options.skin]){var found=!1,rExp=new RegExp(this._options.skin+"/"+WYMeditor.SKINS_DEFAULT_CSS+"$");jQuery("link").each(function(){this.href.match(rExp)&&(found=!0)}),found||WYMeditor.loadCss(this._options.skinPath+WYMeditor.SKINS_DEFAULT_CSS)}jQuery(this._box).addClass("wym_skin_"+this._options.skin),this._options.initSkin&&!WYMeditor.SKINS[this._options.skin]&&eval(jQuery.ajax({url:this._options.skinPath+WYMeditor.SKINS_DEFAULT_JS,async:!1}).responseText),WYMeditor.SKINS[this._options.skin]&&WYMeditor.SKINS[this._options.skin].init&&WYMeditor.SKINS[this._options.skin].init(this)},WYMeditor.INIT_DIALOG=function(index){var wym=window.opener.WYMeditor.INSTANCES[index],doc=window.document,selected=wym.selected(),dialogType=jQuery(wym._options.dialogTypeSelector).val(),sStamp=wym.uniqueStamp();switch(dialogType){case WYMeditor.DIALOG_LINK:selected&&selected.tagName&&selected.tagName.toLowerCase!=WYMeditor.A&&(selected=jQuery(selected).parentsOrSelf(WYMeditor.A)),!selected&&wym._selected_image&&(selected=jQuery(wym._selected_image).parentsOrSelf(WYMeditor.A))}jQuery.isFunction(wym._options.preInitDialog)&&wym._options.preInitDialog(wym,window);var styles=doc.styleSheets[0],aCss=eval(wym._options.dialogStyles);wym.addCssRules(doc,aCss),selected&&(jQuery(wym._options.hrefSelector).val(jQuery(selected).attr(WYMeditor.HREF)),jQuery(wym._options.srcSelector).val(jQuery(selected).attr(WYMeditor.SRC)),jQuery(wym._options.titleSelector).val(jQuery(selected).attr(WYMeditor.TITLE)),jQuery(wym._options.altSelector).val(jQuery(selected).attr(WYMeditor.ALT))),wym._selected_image&&(jQuery(wym._options.dialogImageSelector+" "+wym._options.srcSelector).val(jQuery(wym._selected_image).attr(WYMeditor.SRC)),jQuery(wym._options.dialogImageSelector+" "+wym._options.titleSelector).val(jQuery(wym._selected_image).attr(WYMeditor.TITLE)),jQuery(wym._options.dialogImageSelector+" "+wym._options.altSelector).val(jQuery(wym._selected_image).attr(WYMeditor.ALT))),jQuery(wym._options.dialogLinkSelector+" "+wym._options.submitSelector).click(function(){var e=jQuery(wym._options.hrefSelector).val();e.length>0&&(wym._exec(WYMeditor.CREATE_LINK,sStamp),jQuery("a[href="+sStamp+"]",wym._doc.body).attr(WYMeditor.HREF,e).attr(WYMeditor.TITLE,jQuery(wym._options.titleSelector).val())),window.close()}),jQuery(wym._options.dialogImageSelector+" "+wym._options.submitSelector).click(function(){var e=jQuery(wym._options.srcSelector).val();e.length>0&&(wym._exec(WYMeditor.INSERT_IMAGE,sStamp),jQuery("img[src$="+sStamp+"]",wym._doc.body).attr(WYMeditor.SRC,e).attr(WYMeditor.TITLE,jQuery(wym._options.titleSelector).val()).attr(WYMeditor.ALT,jQuery(wym._options.altSelector).val())),window.close()}),jQuery(wym._options.dialogTableSelector+" "+wym._options.submitSelector).click(function(){var e=jQuery(wym._options.rowsSelector).val(),t=jQuery(wym._options.colsSelector).val();if(e>0&&t>0){var n=wym._doc.createElement(WYMeditor.TABLE),i=null,r=jQuery(wym._options.captionSelector).val(),a=n.createCaption();for(a.innerHTML=r,x=0;x<e;x++)for(i=n.insertRow(x),y=0;y<t;y++)i.insertCell(y);jQuery(n).attr("summary",jQuery(wym._options.summarySelector).val());var o=jQuery(wym.findUp(wym.container(),WYMeditor.MAIN_CONTAINERS)).get(0);o&&o.parentNode?jQuery(o).after(n):jQuery(wym._doc.body).append(n)}window.close()}),jQuery(wym._options.dialogPasteSelector+" "+wym._options.submitSelector).click(function(){var e=jQuery(wym._options.textSelector).val();wym.paste(e),window.close()}),jQuery(wym._options.dialogPreviewSelector+" "+wym._options.previewSelector).html(wym.xhtml()),jQuery(wym._options.cancelSelector).mousedown(function(){window.close()}),jQuery.isFunction(wym._options.postInitDialog)&&wym._options.postInitDialog(wym,window)},WYMeditor.XmlHelper=function(){return this._entitiesDiv=document.createElement("div"),this},WYMeditor.XmlHelper.prototype.tag=function(e,t,n){return t=t||!1,n=n||!1,"<"+e+(t?this.tagOptions(t):"")+(n?">":" />")},WYMeditor.XmlHelper.prototype.contentTag=function(e,t,n){return n=n||!1,"<"+e+(n?this.tagOptions(n):"")+">"+t+"</"+e+">"},WYMeditor.XmlHelper.prototype.cdataSection=function(e){return"<![CDATA["+e+"]]>"},WYMeditor.XmlHelper.prototype.escapeOnce=function(e){return this._fixDoubleEscape(this.escapeEntities(e))},WYMeditor.XmlHelper.prototype._fixDoubleEscape=function(e){return e.replace(/&amp;([a-z]+|(#\d+));/gi,"&$1;")},WYMeditor.XmlHelper.prototype.tagOptions=function(e){var t=this;t._formated_options="";for(var n in e){var i=e[n];"function"!=typeof i&&i.length>0&&(parseInt(n)==n&&"object"==typeof i&&(n=i.shift(),i=i.pop()),""!=n&&""!=i&&(t._formated_options+=" "+n+'="'+t.escapeOnce(i)+'"'))}return t._formated_options},WYMeditor.XmlHelper.prototype.escapeEntities=function(e,t){this._entitiesDiv.innerHTML=e,this._entitiesDiv.textContent=e;var n=this._entitiesDiv.innerHTML;return void 0===t&&(0!=t&&(n=n.replace('"',"&quot;")),1==t&&(n=n.replace('"',"&#039;"))),n},WYMeditor.XmlHelper.prototype.parseAttributes=function(e){var t=[],n=e.split(/((=\s*")(")("))|((=\s*\')(\')(\'))|((=\s*[^>\s]*))/g);if(n.toString()!=e)for(var i in n){var r=n[i];if("function"!=typeof r&&0!=r.length){var a=new RegExp("(\\w+)\\s*"+r);if(match=e.match(a)){var o=r.replace(/^[\s=]+/,""),s=o.charAt(0);s='"'==s?'"':"'"==s?"'":"",""!=s&&(o='"'==s?o.replace(/^"|"+$/g,""):o.replace(/^'|'+$/g,"")),e=e.replace(match[0],""),t.push([match[1],o])}}}return t},WYMeditor.XhtmlValidator={_attributes:{core:{except:["base","head","html","meta","param","script","style","title"],attributes:["class","id","style","title","accesskey","tabindex"]},language:{except:["base","br","hr","iframe","param","script"],attributes:{dir:["ltr","rtl"],0:"lang",1:"xml:lang"}},keyboard:{attributes:{accesskey:/^(\w){1}$/,tabindex:/^(\d)+$/}}},_events:{window:{only:["body"],attributes:["onload","onunload"]},form:{only:["form","input","textarea","select","a","label","button"],attributes:["onchange","onsubmit","onreset","onselect","onblur","onfocus"]},keyboard:{except:["base","bdo","br","frame","frameset","head","html","iframe","meta","param","script","style","title"],attributes:["onkeydown","onkeypress","onkeyup"]},mouse:{except:["base","bdo","br","head","html","meta","param","script","style","title"],attributes:["onclick","ondblclick","onmousedown","onmousemove","onmouseover","onmouseout","onmouseup"]}},_tags:{a:{attributes:{0:"charset",1:"coords",2:"href",3:"hreflang",4:"name",rel:/^(alternate|designates|stylesheet|start|next|prev|contents|index|glossary|copyright|chapter|section|subsection|appendix|help|bookmark| |shortcut|icon)+$/,rev:/^(alternate|designates|stylesheet|start|next|prev|contents|index|glossary|copyright|chapter|section|subsection|appendix|help|bookmark| 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)+$/i,rel:/^(alternate|appendix|bookmark|chapter|contents|copyright|glossary|help|home|index|next|prev|section|start|stylesheet|subsection| |shortcut|icon)+$/i,rev:/^(alternate|appendix|bookmark|chapter|contents|copyright|glossary|help|home|index|next|prev|section|start|stylesheet|subsection| |shortcut|icon)+$/i,3:"type"},inside:"head"},map:{attributes:["id","name"],required:["id"]},meta:{attributes:{0:"content","http-equiv":/^(content\-type|expires|refresh|set\-cookie)$/i,1:"name",2:"scheme"},required:["content"]},27:"noscript",object:{attributes:["archive","classid","codebase","codetype","data","declare","height","name","standby","type","usemap","width"]},28:"ol",optgroup:{attributes:{0:"label",disabled:/^(disabled)$/},required:["label"]},option:{attributes:{0:"label",disabled:/^(disabled)$/,selected:/^(selected)$/,1:"value"},inside:"select"},29:"p",param:{attributes:{0:"type",valuetype:/^(data|ref|object)$/,1:"valuetype",2:"value"},required:["name"]},30:"pre",q:{attributes:["cite"]},31:"samp",script:{attributes:{type:/^(text\/ecmascript|text\/javascript|text\/jscript|text\/vbscript|text\/vbs|text\/xml)$/,0:"charset",defer:/^(defer)$/,1:"src"},required:["type"]},select:{attributes:{disabled:/^(disabled)$/,multiple:/^(multiple)$/,0:"name",1:"size"},inside:"form"},32:"small",33:"span",34:"strong",style:{attributes:{0:"type",media:/^(screen|tty|tv|projection|handheld|print|braille|aural|all)$/},required:["type"]},35:"sub",36:"sup",table:{attributes:{0:"border",1:"cellpadding",2:"cellspacing",frame:/^(void|above|below|hsides|lhs|rhs|vsides|box|border)$/,rules:/^(none|groups|rows|cols|all)$/,3:"summary",4:"width"}},tbody:{attributes:{align:/^(right|left|center|justify)$/,0:"char",1:"charoff",valign:/^(top|middle|bottom|baseline)$/}},td:{attributes:{0:"abbr",align:/^(left|right|center|justify|char)$/,1:"axis",2:"char",3:"charoff",colspan:/^(\d)+$/,4:"headers",rowspan:/^(\d)+$/,scope:/^(col|colgroup|row|rowgroup)$/,valign:/^(top|middle|bottom|baseline)$/}},textarea:{attributes:["cols","rows","disabled","name","readonly"],required:["cols","rows"],inside:"form"},tfoot:{attributes:{align:/^(right|left|center|justify)$/,0:"char",1:"charoff",valign:/^(top|middle|bottom)$/,2:"baseline"}},th:{attributes:{0:"abbr",align:/^(left|right|center|justify|char)$/,1:"axis",2:"char",3:"charoff",colspan:/^(\d)+$/,4:"headers",rowspan:/^(\d)+$/,scope:/^(col|colgroup|row|rowgroup)$/,valign:/^(top|middle|bottom|baseline)$/}},thead:{attributes:{align:/^(right|left|center|justify)$/,0:"char",1:"charoff",valign:/^(top|middle|bottom|baseline)$/}},37:"title",tr:{attributes:{align:/^(right|left|center|justify|char)$/,0:"char",1:"charoff",valign:/^(top|middle|bottom|baseline)$/}},38:"tt",39:"ul",40:"var"},skiped_attributes:[],skiped_attribute_values:[],getValidTagAttributes:function(e,t){var n={},i=this.getPossibleTagAttributes(e);for(var r in t){var a=t[r],o=WYMeditor.Helper;o.contains(this.skiped_attributes,r)||o.contains(this.skiped_attribute_values,a)||"function"!=typeof a&&o.contains(i,r)&&(this.doesAttributeNeedsValidation(e,r)?this.validateAttribute(e,r,a)&&(n[r]=a):n[r]=a)}return n},getUniqueAttributesAndEventsForTag:function(e){var t=[];if(this._tags[e]&&this._tags[e].attributes)for(k in this._tags[e].attributes)t.push(parseInt(k)==k?this._tags[e].attributes[k]:k);return t},getDefaultAttributesAndEventsForTags:function(){var e=[];for(var t in this._events)e.push(this._events[t]);for(var t in this._attributes)e.push(this._attributes[t]);return e},isValidTag:function(e){if(this._tags[e])return!0;for(var t in this._tags)if(this._tags[t]==e)return!0;return!1},getDefaultAttributesAndEventsForTag:function(e){var t=[];if(this.isValidTag(e)){var n=this.getDefaultAttributesAndEventsForTags();for(var i in n){var r=n[i];if("object"==typeof r){var a=WYMeditor.Helper;if(r.except&&a.contains(r.except,e)||r.only&&!a.contains(r.only,e))continue;var o=r.attributes?r.attributes:r.events;for(var s in o)t.push("string"!=typeof o[s]?s:o[s])}}}return t},doesAttributeNeedsValidation:function(e,t){return this._tags[e]&&(this._tags[e].attributes&&this._tags[e].attributes[t]||this._tags[e].required&&WYMeditor.Helper.contains(this._tags[e].required,t))},validateAttribute:function(e,t,n){return!(this._tags[e]&&this._tags[e].attributes&&this._tags[e].attributes[t]&&n.length>0&&!n.match(this._tags[e].attributes[t])||this._tags[e]&&this._tags[e].required&&WYMeditor.Helper.contains(this._tags[e].required,t)&&0==n.length)&&void 0!==this._tags[e]},getPossibleTagAttributes:function(e){return this._possible_tag_attributes||(this._possible_tag_attributes={}),this._possible_tag_attributes[e]||(this._possible_tag_attributes[e]=this.getUniqueAttributesAndEventsForTag(e).concat(this.getDefaultAttributesAndEventsForTag(e))),this._possible_tag_attributes[e]}},WYMeditor.ParallelRegex=function(e){return this._case=e,this._patterns=[],this._labels=[],this._regex=null,this},WYMeditor.ParallelRegex.prototype.addPattern=function(e,t){t=t||!0;var n=this._patterns.length;this._patterns[n]=e,this._labels[n]=t,this._regex=null},WYMeditor.ParallelRegex.prototype.match=function(e){if(0==this._patterns.length)return[!1,""];var t=e.match(this._getCompoundedRegex());if(!t)return[!1,""];for(var n=t[0],i=1;i<t.length;i++)if(t[i])return[this._labels[i-1],n];return[!0,t[0]]},WYMeditor.ParallelRegex.prototype._getCompoundedRegex=function(){if(null==this._regex){for(var e=0,t=this._patterns.length;e<t;e++)this._patterns[e]="("+this._untokenizeRegex(this._tokenizeRegex(this._patterns[e]).replace(/([\/\(\)])/g,"\\$1"))+")";this._regex=new RegExp(this._patterns.join("|"),this._getPerlMatchingFlags())}return this._regex},WYMeditor.ParallelRegex.prototype._tokenizeRegex=function(e){return e.replace(/\(\?(i|m|s|x|U)\)/,"~~~~~~Tk1$1~~~~~~").replace(/\(\?(\-[i|m|s|x|U])\)/,"~~~~~~Tk2$1~~~~~~").replace(/\(\?\=(.*)\)/,"~~~~~~Tk3$1~~~~~~").replace(/\(\?\!(.*)\)/,"~~~~~~Tk4$1~~~~~~").replace(/\(\?\<\=(.*)\)/,"~~~~~~Tk5$1~~~~~~").replace(/\(\?\<\!(.*)\)/,"~~~~~~Tk6$1~~~~~~").replace(/\(\?\:(.*)\)/,"~~~~~~Tk7$1~~~~~~")},WYMeditor.ParallelRegex.prototype._untokenizeRegex=function(e){return e.replace(/~~~~~~Tk1(.{1})~~~~~~/,"(?$1)").replace(/~~~~~~Tk2(.{2})~~~~~~/,"(?$1)").replace(/~~~~~~Tk3(.*)~~~~~~/,"(?=$1)").replace(/~~~~~~Tk4(.*)~~~~~~/,"(?!$1)").replace(/~~~~~~Tk5(.*)~~~~~~/,"(?<=$1)").replace(/~~~~~~Tk6(.*)~~~~~~/,"(?<!$1)").replace(/~~~~~~Tk7(.*)~~~~~~/,"(?:$1)")},WYMeditor.ParallelRegex.prototype._getPerlMatchingFlags=function(){return this._case?"m":"mi"},WYMeditor.StateStack=function(e){return this._stack=[e],this},WYMeditor.StateStack.prototype.getCurrent=function(){return this._stack[this._stack.length-1]},WYMeditor.StateStack.prototype.enter=function(e){this._stack.push(e)},WYMeditor.StateStack.prototype.leave=function(){return 1!=this._stack.length&&(this._stack.pop(),!0)},WYMeditor.LEXER_ENTER=1,WYMeditor.LEXER_MATCHED=2,WYMeditor.LEXER_UNMATCHED=3,WYMeditor.LEXER_EXIT=4,WYMeditor.LEXER_SPECIAL=5,WYMeditor.Lexer=function(e,t,n){return t=t||"accept",this._case=n||!1,this._regexes={},this._parser=e,this._mode=new WYMeditor.StateStack(t),this._mode_handlers={},this._mode_handlers[t]=t,this},WYMeditor.Lexer.prototype.addPattern=function(e,t){var t=t||"accept";void 0===this._regexes[t]&&(this._regexes[t]=new WYMeditor.ParallelRegex(this._case)),this._regexes[t].addPattern(e),void 0===this._mode_handlers[t]&&(this._mode_handlers[t]=t)},WYMeditor.Lexer.prototype.addEntryPattern=function(e,t,n){void 0===this._regexes[t]&&(this._regexes[t]=new WYMeditor.ParallelRegex(this._case)),this._regexes[t].addPattern(e,n),void 0===this._mode_handlers[n]&&(this._mode_handlers[n]=n)},WYMeditor.Lexer.prototype.addExitPattern=function(e,t){void 0===this._regexes[t]&&(this._regexes[t]=new WYMeditor.ParallelRegex(this._case)),this._regexes[t].addPattern(e,"__exit"),void 0===this._mode_handlers[t]&&(this._mode_handlers[t]=t)},WYMeditor.Lexer.prototype.addSpecialPattern=function(e,t,n){void 0===this._regexes[t]&&(this._regexes[t]=new WYMeditor.ParallelRegex(this._case)),this._regexes[t].addPattern(e,"_"+n),void 0===this._mode_handlers[n]&&(this._mode_handlers[n]=n)},WYMeditor.Lexer.prototype.mapHandler=function(e,t){this._mode_handlers[e]=t},WYMeditor.Lexer.prototype.parse=function(e){if(void 0===this._parser)return!1;for(var t,n=e.length;"object"==typeof(t=this._reduce(e));){var e=t[0],i=t[1],r=t[2],a=t[3];if(!this._dispatchTokens(i,r,a))return!1;if(""==e)return!0;if(e.length==n)return!1;n=e.length}return!!t&&this._invokeParser(e,WYMeditor.LEXER_UNMATCHED)},WYMeditor.Lexer.prototype._dispatchTokens=function(e,t,n){return n=n||!1,!!this._invokeParser(e,WYMeditor.LEXER_UNMATCHED)&&("boolean"==typeof n?this._invokeParser(t,WYMeditor.LEXER_MATCHED):this._isModeEnd(n)?!!this._invokeParser(t,WYMeditor.LEXER_EXIT)&&this._mode.leave():this._isSpecialMode(n)?(this._mode.enter(this._decodeSpecial(n)),!!this._invokeParser(t,WYMeditor.LEXER_SPECIAL)&&this._mode.leave()):(this._mode.enter(n),this._invokeParser(t,WYMeditor.LEXER_ENTER)))},WYMeditor.Lexer.prototype._isModeEnd=function(e){return"__exit"===e},WYMeditor.Lexer.prototype._isSpecialMode=function(e){return"_"==e.substring(0,1)},WYMeditor.Lexer.prototype._decodeSpecial=function(e){return e.substring(1)},WYMeditor.Lexer.prototype._invokeParser=function(content,is_match){if(!/ +/.test(content)&&(""===content||0==content))return!0;var current=this._mode.getCurrent(),handler=this._mode_handlers[current],result;return eval("result = this._parser."+handler+"(content, is_match);"),result},WYMeditor.Lexer.prototype._reduce=function(e){var t=this._regexes[this._mode.getCurrent()].match(e),n=t[1],i=t[0];if(i){var r=e.indexOf(n),a=e.substr(0,r);return e=e.substring(r+n.length),[e,a,n,i]}return!0},WYMeditor.XhtmlLexer=function(e){return jQuery.extend(this,new WYMeditor.Lexer(e,"Text")),this.mapHandler("Text","Text"),this.addTokens(),this.init(),this},WYMeditor.XhtmlLexer.prototype.init=function(){},WYMeditor.XhtmlLexer.prototype.addTokens=function(){this.addCommentTokens("Text"),this.addScriptTokens("Text"),this.addCssTokens("Text"),this.addTagTokens("Text")},WYMeditor.XhtmlLexer.prototype.addCommentTokens=function(e){this.addEntryPattern("\x3c!--",e,"Comment"),this.addExitPattern("--\x3e","Comment")},WYMeditor.XhtmlLexer.prototype.addScriptTokens=function(e){this.addEntryPattern("<script",e,"Script"),this.addExitPattern("<\/script>","Script")},WYMeditor.XhtmlLexer.prototype.addCssTokens=function(e){this.addEntryPattern("<style",e,"Css"),this.addExitPattern("</style>","Css")},WYMeditor.XhtmlLexer.prototype.addTagTokens=function(e){this.addSpecialPattern("<\\s*[a-z0-9:-]+\\s*>",e,"OpeningTag"),this.addEntryPattern("<[a-z0-9:-]+[\\/ \\>]+",e,"OpeningTag"),this.addInTagDeclarationTokens("OpeningTag"),this.addSpecialPattern("</\\s*[a-z0-9:-]+\\s*>",e,"ClosingTag")},WYMeditor.XhtmlLexer.prototype.addInTagDeclarationTokens=function(e){this.addSpecialPattern("\\s+",e,"Ignore"),this.addAttributeTokens(e),this.addExitPattern("/>",e),this.addExitPattern(">",e)},WYMeditor.XhtmlLexer.prototype.addAttributeTokens=function(e){this.addSpecialPattern("\\s*[a-z-_0-9]*:?[a-z-_0-9]+\\s*(?==)\\s*",e,"TagAttributes"),this.addEntryPattern('=\\s*"',e,"DoubleQuotedAttribute"),this.addPattern('\\\\"',"DoubleQuotedAttribute"),this.addExitPattern('"',"DoubleQuotedAttribute"),this.addEntryPattern("=\\s*'",e,"SingleQuotedAttribute"),this.addPattern("\\\\'","SingleQuotedAttribute"),this.addExitPattern("'","SingleQuotedAttribute"),this.addSpecialPattern("=\\s*[^>\\s]*",e,"UnquotedAttribute")},WYMeditor.XhtmlParser=function(e,t){var t=t||"Text";return this._Lexer=new WYMeditor.XhtmlLexer(this),this._Listener=e,this._mode=t,this._matches=[],this._last_match="",this._current_match="",this},WYMeditor.XhtmlParser.prototype.parse=function(e){return this._Lexer.parse(this.beforeParsing(e)),this.afterParsing(this._Listener.getResult())},WYMeditor.XhtmlParser.prototype.beforeParsing=function(e){return(e.match(/class="MsoNormal"/)||e.match(/ns = "urn:schemas-microsoft-com/))&&this._Listener.avoidStylingTagsAndAttributes(),this._Listener.beforeParsing(e)},WYMeditor.XhtmlParser.prototype.afterParsing=function(e){return this._Listener._avoiding_tags_implicitly&&this._Listener.allowStylingTagsAndAttributes(),this._Listener.afterParsing(e)},WYMeditor.XhtmlParser.prototype.Ignore=function(e,t){return!0},WYMeditor.XhtmlParser.prototype.Text=function(e){return this._Listener.addContent(e),!0},WYMeditor.XhtmlParser.prototype.Comment=function(e,t){return this._addNonTagBlock(e,t,"addComment")},WYMeditor.XhtmlParser.prototype.Script=function(e,t){return this._addNonTagBlock(e,t,"addScript")},WYMeditor.XhtmlParser.prototype.Css=function(e,t){return this._addNonTagBlock(e,t,"addCss")},WYMeditor.XhtmlParser.prototype._addNonTagBlock=function(e,t,n){switch(t){case WYMeditor.LEXER_ENTER:this._non_tag=e;break;case WYMeditor.LEXER_UNMATCHED:this._non_tag+=e;break;case WYMeditor.LEXER_EXIT:switch(n){case"addComment":this._Listener.addComment(this._non_tag+e);break;case"addScript":this._Listener.addScript(this._non_tag+e);break;case"addCss":this._Listener.addCss(this._non_tag+e)}}return!0},WYMeditor.XhtmlParser.prototype.OpeningTag=function(e,t){switch(t){case WYMeditor.LEXER_ENTER:this._tag=this.normalizeTag(e),this._tag_attributes={};break;case WYMeditor.LEXER_SPECIAL:this._callOpenTagListener(this.normalizeTag(e));break;case WYMeditor.LEXER_EXIT:this._callOpenTagListener(this._tag,this._tag_attributes)}return!0},WYMeditor.XhtmlParser.prototype.ClosingTag=function(e,t){return this._callCloseTagListener(this.normalizeTag(e)),!0},WYMeditor.XhtmlParser.prototype._callOpenTagListener=function(e,t){var t=t||{};this.autoCloseUnclosedBeforeNewOpening(e),this._Listener.isBlockTag(e)?(this._Listener._tag_stack.push(e),this._Listener.fixNestingBeforeOpeningBlockTag(e,t),this._Listener.openBlockTag(e,t),this._increaseOpenTagCounter(e)):this._Listener.isInlineTag(e)?this._Listener.inlineTag(e,t):(this._Listener.openUnknownTag(e,t),this._increaseOpenTagCounter(e)),this._Listener.last_tag=e,this._Listener.last_tag_opened=!0,this._Listener.last_tag_attributes=t},WYMeditor.XhtmlParser.prototype._callCloseTagListener=function(e){if(this._decreaseOpenTagCounter(e))if(this.autoCloseUnclosedBeforeTagClosing(e),this._Listener.isBlockTag(e)){var t=this._Listener._tag_stack.pop();if(0==t)return;t!=e&&(e=t),this._Listener.closeBlockTag(e)}else this._Listener.closeUnknownTag(e);else this._Listener.closeUnopenedTag(e);this._Listener.last_tag=e,this._Listener.last_tag_opened=!1},WYMeditor.XhtmlParser.prototype._increaseOpenTagCounter=function(e){this._Listener._open_tags[e]=this._Listener._open_tags[e]||0,this._Listener._open_tags[e]++},WYMeditor.XhtmlParser.prototype._decreaseOpenTagCounter=function(e){return!!this._Listener._open_tags[e]&&(this._Listener._open_tags[e]--,0==this._Listener._open_tags[e]&&(this._Listener._open_tags[e]=void 0),!0)},WYMeditor.XhtmlParser.prototype.autoCloseUnclosedBeforeNewOpening=function(e){this._autoCloseUnclosed(e,!1)},WYMeditor.XhtmlParser.prototype.autoCloseUnclosedBeforeTagClosing=function(e){this._autoCloseUnclosed(e,!0)},WYMeditor.XhtmlParser.prototype._autoCloseUnclosed=function(e,t){var t=t||!1;if(this._Listener._open_tags)for(var n in this._Listener._open_tags){var i=this._Listener._open_tags[n];i>0&&this._Listener.shouldCloseTagAutomatically(n,e,t)&&this._callCloseTagListener(n,!0)}},WYMeditor.XhtmlParser.prototype.getTagReplacements=function(){return this._Listener.getTagReplacements()},WYMeditor.XhtmlParser.prototype.normalizeTag=function(e){e=e.replace(/^([\s<\/>]*)|([\s<\/>]*)$/gm,"").toLowerCase();var t=this._Listener.getTagReplacements();return t[e]?t[e]:e},WYMeditor.XhtmlParser.prototype.TagAttributes=function(e,t){return WYMeditor.LEXER_SPECIAL==t&&(this._current_attribute=e),!0},WYMeditor.XhtmlParser.prototype.DoubleQuotedAttribute=function(e,t){return WYMeditor.LEXER_UNMATCHED==t&&(this._tag_attributes[this._current_attribute]=e),!0},WYMeditor.XhtmlParser.prototype.SingleQuotedAttribute=function(e,t){return WYMeditor.LEXER_UNMATCHED==t&&(this._tag_attributes[this._current_attribute]=e),!0},WYMeditor.XhtmlParser.prototype.UnquotedAttribute=function(e,t){return this._tag_attributes[this._current_attribute]=e.replace(/^=/,""),!0},WYMeditor.XhtmlSaxListener=function(){return this.output="",this.helper=new WYMeditor.XmlHelper,this._open_tags={},this.validator=WYMeditor.XhtmlValidator,this._tag_stack=[],this.avoided_tags=[],this.entities={"&nbsp;":"&#160;","&iexcl;":"&#161;","&cent;":"&#162;","&pound;":"&#163;","&curren;":"&#164;","&yen;":"&#165;","&brvbar;":"&#166;","&sect;":"&#167;","&uml;":"&#168;","&copy;":"&#169;","&ordf;":"&#170;","&laquo;":"&#171;","&not;":"&#172;","&shy;":"&#173;","&reg;":"&#174;","&macr;":"&#175;","&deg;":"&#176;","&plusmn;":"&#177;","&sup2;":"&#178;","&sup3;":"&#179;","&acute;":"&#180;","&micro;":"&#181;","&para;":"&#182;","&middot;":"&#183;","&cedil;":"&#184;","&sup1;":"&#185;","&ordm;":"&#186;","&raquo;":"&#187;","&frac14;":"&#188;","&frac12;":"&#189;","&frac34;":"&#190;","&iquest;":"&#191;","&Agrave;":"&#192;","&Aacute;":"&#193;","&Acirc;":"&#194;","&Atilde;":"&#195;","&Auml;":"&#196;","&Aring;":"&#197;","&AElig;":"&#198;","&Ccedil;":"&#199;","&Egrave;":"&#200;","&Eacute;":"&#201;","&Ecirc;":"&#202;","&Euml;":"&#203;","&Igrave;":"&#204;","&Iacute;":"&#205;","&Icirc;":"&#206;","&Iuml;":"&#207;","&ETH;":"&#208;","&Ntilde;":"&#209;","&Ograve;":"&#210;","&Oacute;":"&#211;","&Ocirc;":"&#212;","&Otilde;":"&#213;","&Ouml;":"&#214;","&times;":"&#215;","&Oslash;":"&#216;","&Ugrave;":"&#217;","&Uacute;":"&#218;","&Ucirc;":"&#219;","&Uuml;":"&#220;","&Yacute;":"&#221;","&THORN;":"&#222;","&szlig;":"&#223;","&agrave;":"&#224;","&aacute;":"&#225;","&acirc;":"&#226;","&atilde;":"&#227;","&auml;":"&#228;","&aring;":"&#229;","&aelig;":"&#230;","&ccedil;":"&#231;","&egrave;":"&#232;","&eacute;":"&#233;","&ecirc;":"&#234;","&euml;":"&#235;","&igrave;":"&#236;","&iacute;":"&#237;","&icirc;":"&#238;","&iuml;":"&#239;","&eth;":"&#240;","&ntilde;":"&#241;","&ograve;":"&#242;","&oacute;":"&#243;","&ocirc;":"&#244;","&otilde;":"&#245;","&ouml;":"&#246;","&divide;":"&#247;","&oslash;":"&#248;","&ugrave;":"&#249;","&uacute;":"&#250;","&ucirc;":"&#251;","&uuml;":"&#252;","&yacute;":"&#253;","&thorn;":"&#254;","&yuml;":"&#255;","&OElig;":"&#338;","&oelig;":"&#339;","&Scaron;":"&#352;","&scaron;":"&#353;","&Yuml;":"&#376;","&fnof;":"&#402;","&circ;":"&#710;","&tilde;":"&#732;","&Alpha;":"&#913;","&Beta;":"&#914;","&Gamma;":"&#915;","&Delta;":"&#916;","&Epsilon;":"&#917;","&Zeta;":"&#918;","&Eta;":"&#919;","&Theta;":"&#920;","&Iota;":"&#921;","&Kappa;":"&#922;","&Lambda;":"&#923;","&Mu;":"&#924;","&Nu;":"&#925;","&Xi;":"&#926;","&Omicron;":"&#927;","&Pi;":"&#928;","&Rho;":"&#929;","&Sigma;":"&#931;","&Tau;":"&#932;","&Upsilon;":"&#933;","&Phi;":"&#934;","&Chi;":"&#935;","&Psi;":"&#936;","&Omega;":"&#937;","&alpha;":"&#945;","&beta;":"&#946;","&gamma;":"&#947;","&delta;":"&#948;","&epsilon;":"&#949;","&zeta;":"&#950;","&eta;":"&#951;","&theta;":"&#952;","&iota;":"&#953;","&kappa;":"&#954;","&lambda;":"&#955;","&mu;":"&#956;","&nu;":"&#957;","&xi;":"&#958;","&omicron;":"&#959;","&pi;":"&#960;","&rho;":"&#961;","&sigmaf;":"&#962;","&sigma;":"&#963;","&tau;":"&#964;","&upsilon;":"&#965;","&phi;":"&#966;","&chi;":"&#967;","&psi;":"&#968;","&omega;":"&#969;","&thetasym;":"&#977;","&upsih;":"&#978;","&piv;":"&#982;","&ensp;":"&#8194;","&emsp;":"&#8195;","&thinsp;":"&#8201;","&zwnj;":"&#8204;","&zwj;":"&#8205;","&lrm;":"&#8206;","&rlm;":"&#8207;","&ndash;":"&#8211;","&mdash;":"&#8212;","&lsquo;":"&#8216;","&rsquo;":"&#8217;","&sbquo;":"&#8218;","&ldquo;":"&#8220;","&rdquo;":"&#8221;","&bdquo;":"&#8222;","&dagger;":"&#8224;","&Dagger;":"&#8225;","&bull;":"&#8226;","&hellip;":"&#8230;","&permil;":"&#8240;","&prime;":"&#8242;","&Prime;":"&#8243;","&lsaquo;":"&#8249;","&rsaquo;":"&#8250;","&oline;":"&#8254;","&frasl;":"&#8260;","&euro;":"&#8364;","&image;":"&#8465;","&weierp;":"&#8472;","&real;":"&#8476;","&trade;":"&#8482;","&alefsym;":"&#8501;","&larr;":"&#8592;","&uarr;":"&#8593;","&rarr;":"&#8594;","&darr;":"&#8595;","&harr;":"&#8596;","&crarr;":"&#8629;","&lArr;":"&#8656;","&uArr;":"&#8657;","&rArr;":"&#8658;","&dArr;":"&#8659;","&hArr;":"&#8660;","&forall;":"&#8704;","&part;":"&#8706;","&exist;":"&#8707;","&empty;":"&#8709;","&nabla;":"&#8711;","&isin;":"&#8712;","&notin;":"&#8713;","&ni;":"&#8715;","&prod;":"&#8719;","&sum;":"&#8721;","&minus;":"&#8722;","&lowast;":"&#8727;","&radic;":"&#8730;","&prop;":"&#8733;","&infin;":"&#8734;","&ang;":"&#8736;","&and;":"&#8743;","&or;":"&#8744;","&cap;":"&#8745;","&cup;":"&#8746;","&int;":"&#8747;","&there4;":"&#8756;","&sim;":"&#8764;","&cong;":"&#8773;","&asymp;":"&#8776;","&ne;":"&#8800;","&equiv;":"&#8801;","&le;":"&#8804;","&ge;":"&#8805;","&sub;":"&#8834;","&sup;":"&#8835;","&nsub;":"&#8836;","&sube;":"&#8838;","&supe;":"&#8839;","&oplus;":"&#8853;","&otimes;":"&#8855;","&perp;":"&#8869;","&sdot;":"&#8901;","&lceil;":"&#8968;","&rceil;":"&#8969;","&lfloor;":"&#8970;","&rfloor;":"&#8971;","&lang;":"&#9001;","&rang;":"&#9002;","&loz;":"&#9674;","&spades;":"&#9824;","&clubs;":"&#9827;","&hearts;":"&#9829;","&diams;":"&#9830;"},this.block_tags=["a","abbr","acronym","address","area","b","base","bdo","big","blockquote","body","button","caption","cite","code","col","colgroup","dd","del","div","dfn","dl","dt","em","fieldset","form","head","h1","h2","h3","h4","h5","h6","html","i","ins","kbd","label","legend","li","map","noscript","object","ol","optgroup","option","p","param","pre","q","samp","script","select","small","span","strong","style","sub","sup","table","tbody","td","textarea","tfoot","th","thead","title","tr","tt","ul","var","extends"],this.inline_tags=["br","hr","img","input"],this},WYMeditor.XhtmlSaxListener.prototype.shouldCloseTagAutomatically=function(e,t,n){var n=n||!1;return!("td"!=e||!(n&&"tr"==t||!n&&"td"==t))||!("option"!=e||!(n&&"select"==t||!n&&"option"==t))},WYMeditor.XhtmlSaxListener.prototype.beforeParsing=function(e){return this.output="",e},WYMeditor.XhtmlSaxListener.prototype.afterParsing=function(e){return e=this.replaceNamedEntities(e),e=this.joinRepeatedEntities(e),e=this.removeEmptyTags(e),e=this.removeBrInPre(e)},WYMeditor.XhtmlSaxListener.prototype.replaceNamedEntities=function(e){for(var t in this.entities)e=e.replace(new RegExp(t,"g"),this.entities[t]);return e},WYMeditor.XhtmlSaxListener.prototype.joinRepeatedEntities=function(e){var t="em|strong|sub|sup|acronym|pre|del|address";return e.replace(new RegExp("</("+t+")><\\1>",""),"").replace(new RegExp("(s*<("+t+")>s*){2}(.*)(s*</\\2>s*){2}",""),"<$2>$3<$2>")},WYMeditor.XhtmlSaxListener.prototype.removeEmptyTags=function(e){return e.replace(new RegExp("<("+this.block_tags.join("|").replace(/\|td/,"").replace(/\|p/,"").replace(/\|th/,"")+")>(<br />|&#160;|&nbsp;|\\s)*</\\1>","g"),"")},WYMeditor.XhtmlSaxListener.prototype.removeBrInPre=function(e){var t=e.match(new RegExp("<pre[^>]*>(.*?)</pre>","gmi"));if(t)for(var n=0;n<t.length;n++)e=e.replace(t[n],t[n].replace(new RegExp("<br />","g"),String.fromCharCode(13,10)));return e},WYMeditor.XhtmlSaxListener.prototype.getResult=function(){return this.output},WYMeditor.XhtmlSaxListener.prototype.getTagReplacements=function(){return{b:"strong",i:"em"}},WYMeditor.XhtmlSaxListener.prototype.addContent=function(e){this.output+=e},WYMeditor.XhtmlSaxListener.prototype.addComment=function(e){this.remove_comments&&(this.output+=e)},WYMeditor.XhtmlSaxListener.prototype.addScript=function(e){this.remove_scripts||(this.output+=e)},WYMeditor.XhtmlSaxListener.prototype.addCss=function(e){this.remove_embeded_styles||(this.output+=e)},WYMeditor.XhtmlSaxListener.prototype.openBlockTag=function(e,t){this.output+=this.helper.tag(e,this.validator.getValidTagAttributes(e,t),!0)},WYMeditor.XhtmlSaxListener.prototype.inlineTag=function(e,t){this.output+=this.helper.tag(e,this.validator.getValidTagAttributes(e,t))},WYMeditor.XhtmlSaxListener.prototype.openUnknownTag=function(e,t){},WYMeditor.XhtmlSaxListener.prototype.closeBlockTag=function(e){this.output=this.output.replace(/<br \/>$/,"")+this._getClosingTagContent("before",e)+"</"+e+">"+this._getClosingTagContent("after",e)},WYMeditor.XhtmlSaxListener.prototype.closeUnknownTag=function(e){},WYMeditor.XhtmlSaxListener.prototype.closeUnopenedTag=function(e){this.output+="</"+e+">"},WYMeditor.XhtmlSaxListener.prototype.avoidStylingTagsAndAttributes=function(){this.avoided_tags=["div","span"],this.validator.skiped_attributes=["style"],this.validator.skiped_attribute_values=["MsoNormal","main1"],this._avoiding_tags_implicitly=!0},WYMeditor.XhtmlSaxListener.prototype.allowStylingTagsAndAttributes=function(){this.avoided_tags=[],this.validator.skiped_attributes=[],this.validator.skiped_attribute_values=[],this._avoiding_tags_implicitly=!1},WYMeditor.XhtmlSaxListener.prototype.isBlockTag=function(e){return!WYMeditor.Helper.contains(this.avoided_tags,e)&&WYMeditor.Helper.contains(this.block_tags,e)},WYMeditor.XhtmlSaxListener.prototype.isInlineTag=function(e){return!WYMeditor.Helper.contains(this.avoided_tags,e)&&WYMeditor.Helper.contains(this.inline_tags,e)},WYMeditor.XhtmlSaxListener.prototype.insertContentAfterClosingTag=function(e,t){this._insertContentWhenClosingTag("after",e,t)},WYMeditor.XhtmlSaxListener.prototype.insertContentBeforeClosingTag=function(e,t){this._insertContentWhenClosingTag("before",e,t)},WYMeditor.XhtmlSaxListener.prototype.fixNestingBeforeOpeningBlockTag=function(e,t){"li"==e||"ul"!=e&&"ol"!=e||!this.last_tag||this.last_tag_opened||"li"!=this.last_tag||(this.output=this.output.replace(/<\/li>$/,""),this.insertContentAfterClosingTag(e,"</li>"))},WYMeditor.XhtmlSaxListener.prototype._insertContentWhenClosingTag=function(e,t,n){this["_insert_"+e+"_closing"]||(this["_insert_"+e+"_closing"]=[]),this["_insert_"+e+"_closing"][t]||(this["_insert_"+e+"_closing"][t]=[]),this["_insert_"+e+"_closing"][t].push(n)},WYMeditor.XhtmlSaxListener.prototype._getClosingTagContent=function(e,t){return this["_insert_"+e+"_closing"]&&this["_insert_"+e+"_closing"][t]&&this["_insert_"+e+"_closing"][t].length>0?this["_insert_"+e+"_closing"][t].pop():""},WYMeditor.WymCssLexer=function(e,t){var t=void 0===t||t;return jQuery.extend(this,new WYMeditor.Lexer(e,t?"Ignore":"WymCss")),this.mapHandler("WymCss","Ignore"),1==t&&(this.addEntryPattern("/\\*[<\\s]*WYMeditor[>\\s]*\\*/","Ignore","WymCss"),this.addExitPattern("/\\*[</\\s]*WYMeditor[>\\s]*\\*/","WymCss")),this.addSpecialPattern("[\\sa-z1-6]*\\.[a-z-_0-9]+","WymCss","WymCssStyleDeclaration"),this.addEntryPattern("/\\*","WymCss","WymCssComment"),this.addExitPattern("\\*/","WymCssComment"),this.addEntryPattern("{","WymCss","WymCssStyle"),this.addExitPattern("}","WymCssStyle"),this.addEntryPattern("/\\*","WymCssStyle","WymCssFeedbackStyle"),this.addExitPattern("\\*/","WymCssFeedbackStyle"),this},WYMeditor.WymCssParser=function(){return this._in_style=!1,this._has_title=!1,this.only_wym_blocks=!0,this.css_settings={classesItems:[],editorStyles:[],dialogStyles:[]},this},WYMeditor.WymCssParser.prototype.parse=function(e,t){var t=void 0===t?this.only_wym_blocks:t;this._Lexer=new WYMeditor.WymCssLexer(this,t),this._Lexer.parse(e)},WYMeditor.WymCssParser.prototype.Ignore=function(e,t){return!0},WYMeditor.WymCssParser.prototype.WymCssComment=function(e,t){return!e.match(/end[a-z0-9\s]*wym[a-z0-9\s]*/im)&&(t==WYMeditor.LEXER_UNMATCHED&&(this._in_style?this._current_item[this._current_element]&&(this._current_item[this._current_element].expressions?this._current_item[this._current_element].expressions.push(e):this._current_item[this._current_element].expressions=[e]):(this._has_title=!0,this._current_item={title:WYMeditor.Helper.trim(e)}),this._in_style=!0),!0)},WYMeditor.WymCssParser.prototype.WymCssStyle=function(e,t){return t==WYMeditor.LEXER_UNMATCHED?""!=(e=WYMeditor.Helper.trim(e))&&(this._current_item[this._current_element].style=e):t==WYMeditor.LEXER_EXIT&&(this._in_style=!1,this._has_title=!1,this.addStyleSetting(this._current_item)),!0},WYMeditor.WymCssParser.prototype.WymCssFeedbackStyle=function(e,t){return t==WYMeditor.LEXER_UNMATCHED&&(this._current_item[this._current_element].feedback_style=e.replace(/^([\s\/\*]*)|([\s\/\*]*)$/gm,"")),!0},WYMeditor.WymCssParser.prototype.WymCssStyleDeclaration=function(e){e=e.replace(/^([\s\.]*)|([\s\.*]*)$/gm,"");var t="";if(e.indexOf(".")>0){var n=e.split(".");this._current_element=n[1];var t=n[0]}else this._current_element=e;return this._has_title||(this._current_item={title:(t?t.toUpperCase()+": ":"")+this._current_element},this._has_title=!0),this._current_item[this._current_element]||(this._current_item[this._current_element]={name:this._current_element}),t&&(this._current_item[this._current_element].tags?this._current_item[this._current_element].tags.push(t):this._current_item[this._current_element].tags=[t]),!0},WYMeditor.WymCssParser.prototype.addStyleSetting=function(e){for(var t in e){var n=e[t];"object"==typeof n&&"title"!=t&&(this.css_settings.classesItems.push({name:WYMeditor.Helper.trim(n.name),title:e.title,expr:WYMeditor.Helper.trim((n.expressions||n.tags).join(", "))}),n.feedback_style&&this.css_settings.editorStyles.push({name:"."+WYMeditor.Helper.trim(n.name),css:n.feedback_style}),n.style&&this.css_settings.dialogStyles.push({name:"."+WYMeditor.Helper.trim(n.name),css:n.style}))}},jQuery.fn.isPhantomNode=function(){return 3==this[0].nodeType&&!/[^\t\n\r ]/.test(this[0].data)},WYMeditor.isPhantomNode=function(e){return 3==e.nodeType&&!/[^\t\n\r ]/.test(e.data)},WYMeditor.isPhantomString=function(e){return!/[^\t\n\r ]/.test(e)},jQuery.fn.parentsOrSelf=function(e){var t=this;return 3==t[0].nodeType&&(t=t.parents().slice(0,1)),1==t.filter(e).size()?t:t.parents(e).slice(0,1)},WYMeditor.Helper={replaceAll:function(e,t,n){var i=new RegExp(t,"g");return e.replace(i,n)},insertAt:function(e,t,n){return e.substr(0,n)+t+e.substring(n)},trim:function(e){return e.replace(/^(\s*)|(\s*)$/gm,"")},contains:function(e,t){for(var n=0;n<e.length;n++)if(e[n]===t)return!0;return!1},indexOf:function(e,t){for(var n=-1,i=0;i<e.length;i++)if(e[i]==t){n=i;break}return n},findByName:function(e,t){for(var n=0;n<e.length;n++){var i=e[n];if(i.name==t)return i}return null}},WYMeditor.WymClassExplorer=function(e){this._wym=e,this._class="className",this._newLine="\r\n"},WYMeditor.WymClassExplorer.prototype.initIframe=function(iframe){this._iframe=iframe,this._doc=iframe.contentWindow.document;var styles=this._doc.styleSheets[0],aCss=eval(this._options.editorStyles);this.addCssRules(this._doc,aCss),this._doc.title=this._wym._index,jQuery("html",this._doc).attr("dir",this._options.direction),jQuery(this._doc.body).html(this._wym._html);var wym=this;this._doc.body.onfocus=function(){wym._doc.designMode="on",wym._doc=iframe.contentWindow.document},this._doc.onbeforedeactivate=function(){wym.saveCaret()},this._doc.onkeyup=function(){wym.saveCaret(),wym.keyup()},this._doc.onclick=function(){wym.saveCaret()},this._doc.body.onbeforepaste=function(){wym._iframe.contentWindow.event.returnValue=!1},this._doc.body.onpaste=function(){wym._iframe.contentWindow.event.returnValue=!1,wym.paste(window.clipboardData.getData("Text"))},this._initialized&&(jQuery.isFunction(this._options.preBind)&&this._options.preBind(this),this._wym.bindEvents(),jQuery.isFunction(this._options.postInit)&&this._options.postInit(this),this.listen()),this._initialized=!0,this._doc.designMode="on";try{this._doc=iframe.contentWindow.document}catch(e){}},WYMeditor.WymClassExplorer.prototype._exec=function(e,t){switch(e){case WYMeditor.INDENT:case WYMeditor.OUTDENT:var n=this.findUp(this.container(),WYMeditor.LI);if(n){var i=n.parentNode.parentNode;(n.parentNode.childNodes.length>1||i.tagName.toLowerCase()==WYMeditor.OL||i.tagName.toLowerCase()==WYMeditor.UL)&&this._doc.execCommand(e)}break;default:t?this._doc.execCommand(e,!1,t):this._doc.execCommand(e)}this.listen()},WYMeditor.WymClassExplorer.prototype.selected=function(){var e=this._iframe.contentWindow.document.caretPos;if(null!=e&&void 0!=e.parentElement)return e.parentElement()},WYMeditor.WymClassExplorer.prototype.saveCaret=function(){this._doc.caretPos=this._doc.selection.createRange()},WYMeditor.WymClassExplorer.prototype.addCssRule=function(e,t){e.addRule(t.name,t.css)},WYMeditor.WymClassExplorer.prototype.insert=function(e){var t=this._doc.selection.createRange();if(jQuery(t.parentElement()).parents(this._options.iframeBodySelector).is("*"))try{t.pasteHTML(e)}catch(e){}else this.paste(e)},WYMeditor.WymClassExplorer.prototype.wrap=function(e,t){var n=this._doc.selection.createRange();if(jQuery(n.parentElement()).parents(this._options.iframeBodySelector).is("*"))try{n.pasteHTML(e+n.text+t)}catch(e){}},WYMeditor.WymClassExplorer.prototype.unwrap=function(){var e=this._doc.selection.createRange();if(jQuery(e.parentElement()).parents(this._options.iframeBodySelector).is("*"))try{var t=e.text;this._exec("Cut"),e.pasteHTML(t)}catch(e){}},WYMeditor.WymClassExplorer.prototype.keyup=function(){this._selected_image=null},WYMeditor.WymClassExplorer.prototype.setFocusToNode=function(e){var t=this._doc.selection.createRange();t.moveToElementText(e),t.collapse(!1),t.move("character",-1),t.select(),e.focus()},WYMeditor.WymClassMozilla=function(e){this._wym=e,this._class="class",this._newLine="\n"},WYMeditor.WymClassMozilla.prototype.initIframe=function(iframe){this._iframe=iframe,this._doc=iframe.contentDocument;var styles=this._doc.styleSheets[0],aCss=eval(this._options.editorStyles);this.addCssRules(this._doc,aCss),this._doc.title=this._wym._index,jQuery("html",this._doc).attr("dir",this._options.direction),this.html(this._wym._html),this.enableDesignMode(),jQuery.isFunction(this._options.preBind)&&this._options.preBind(this),this._wym.bindEvents(),jQuery(this._doc).bind("keydown",this.keydown),jQuery(this._doc).bind("keyup",this.keyup),jQuery(this._doc).bind("focus",this.enableDesignMode),jQuery.isFunction(this._options.postInit)&&this._options.postInit(this),this.listen()},WYMeditor.WymClassMozilla.prototype.html=function(e){if("string"!=typeof e)return jQuery(this._doc.body).html();try{this._doc.designMode="off"}catch(e){}e=e.replace(/<em(\b[^>]*)>/gi,"<i$1>").replace(/<\/em>/gi,"</i>").replace(/<strong(\b[^>]*)>/gi,"<b$1>").replace(/<\/strong>/gi,"</b>"),jQuery(this._doc.body).html(e),this.enableDesignMode()},WYMeditor.WymClassMozilla.prototype._exec=function(e,t){if(!this.selected())return!1;switch(e){case WYMeditor.INDENT:case WYMeditor.OUTDENT:var n=this.selected(),i=this._iframe.contentWindow.getSelection(),r=i.anchorNode;if("#text"==r.nodeName&&(r=r.parentNode),n=this.findUp(n,WYMeditor.BLOCKS),r=this.findUp(r,WYMeditor.BLOCKS),n&&n==r&&n.tagName.toLowerCase()==WYMeditor.LI){var a=n.parentNode.parentNode;(n.parentNode.childNodes.length>1||a.tagName.toLowerCase()==WYMeditor.OL||a.tagName.toLowerCase()==WYMeditor.UL)&&this._doc.execCommand(e,"",null)}break;default:t?this._doc.execCommand(e,"",t):this._doc.execCommand(e,"",null)}this.selected().tagName.toLowerCase()==WYMeditor.BODY&&this._exec(WYMeditor.FORMAT_BLOCK,WYMeditor.P),this.listen()},WYMeditor.WymClassMozilla.prototype.selected=function(){var e=this._iframe.contentWindow.getSelection(),t=e.focusNode;return t?"#text"==t.nodeName?t.parentNode:t:null},WYMeditor.WymClassMozilla.prototype.addCssRule=function(e,t){e.insertRule(t.name+" {"+t.css+"}",e.cssRules.length)},WYMeditor.WymClassMozilla.prototype.keydown=function(e){var t=WYMeditor.INSTANCES[this.title],n=null;if(e.keyCode===WYMeditor.KEY.ENTER&&(n=t.selected())){var i=$(n),r=(i.parent(),i.parents(".embedded-item"));if(r.size()){var a=$("<p/>");return i.hasClass("title")?r.before(a):i.hasClass("content")&&r.after(a),t.setFocusToNode(a.get(0)),!1}}if(e.ctrlKey){if(66==e.keyCode)return t._exec(WYMeditor.BOLD),!1;if(73==e.keyCode)return t._exec(WYMeditor.ITALIC),!1}else 13==e.keyCode&&(e.shiftKey||(n=t.selected())&&n.tagName.toLowerCase()==WYMeditor.PRE&&(e.preventDefault(),t.insert("<p></p>")))},WYMeditor.WymClassMozilla.prototype.keyup=function(e){var t=WYMeditor.INSTANCES[this.title];t._selected_image=null;var n=null;if(13!=e.keyCode||e.shiftKey){if(8!=e.keyCode&&17!=e.keyCode&&46!=e.keyCode&&224!=e.keyCode&&!e.metaKey&&!e.ctrlKey){n=t.selected();var i=n.tagName.toLowerCase();"strong"!=i&&"b"!=i&&"em"!=i&&"i"!=i&&"sub"!=i&&"sup"!=i&&"a"!=i||(i=n.parentNode.tagName.toLowerCase()),i==WYMeditor.BODY&&t._exec(WYMeditor.FORMAT_BLOCK,WYMeditor.P)}}else jQuery(t._doc.body).children(WYMeditor.BR).remove()},WYMeditor.WymClassMozilla.prototype.enableDesignMode=function(){if("off"==this.designMode)try{this.designMode="on",this.execCommand("styleWithCSS","",!1)}catch(e){}},WYMeditor.WymClassMozilla.prototype.setFocusToNode=function(e){var t=document.createRange();t.selectNode(e);var n=this._iframe.contentWindow.getSelection();n.addRange(t),n.collapse(e,e.childNodes.length),this._iframe.contentWindow.focus()},WYMeditor.WymClassMozilla.prototype.openBlockTag=function(e,t){var t=this.validator.getValidTagAttributes(e,t);if("span"==e&&t.style){var n=this.getTagForStyle(t.style);if(!n)return;this._tag_stack.pop();var e=n;this._tag_stack.push(n),t.style=""}this.output+=this.helper.tag(e,t,!0)},WYMeditor.WymClassMozilla.prototype.getTagForStyle=function(e){return/bold/.test(e)?"strong":/italic/.test(e)?"em":/sub/.test(e)?"sub":!!/sub/.test(e)&&"super"},WYMeditor.WymClassOpera=function(e){this._wym=e,this._class="class",this._newLine="\r\n"},WYMeditor.WymClassOpera.prototype.initIframe=function(iframe){this._iframe=iframe,this._doc=iframe.contentWindow.document;var styles=this._doc.styleSheets[0],aCss=eval(this._options.editorStyles);this.addCssRules(this._doc,aCss),this._doc.title=this._wym._index,jQuery("html",this._doc).attr("dir",this._options.direction),this._doc.designMode="on",this.html(this._wym._html),jQuery.isFunction(this._options.preBind)&&this._options.preBind(this),this._wym.bindEvents(),jQuery(this._doc).bind("keydown",this.keydown),jQuery(this._doc).bind("keyup",this.keyup),jQuery.isFunction(this._options.postInit)&&this._options.postInit(this),this.listen()},WYMeditor.WymClassOpera.prototype._exec=function(e,t){t?this._doc.execCommand(e,!1,t):this._doc.execCommand(e),this.listen()},WYMeditor.WymClassOpera.prototype.selected=function(){var e=this._iframe.contentWindow.getSelection(),t=e.focusNode;return t?"#text"==t.nodeName?t.parentNode:t:null},WYMeditor.WymClassOpera.prototype.addCssRule=function(e,t){e.insertRule(t.name+" {"+t.css+"}",e.cssRules.length)},WYMeditor.WymClassOpera.prototype.keydown=function(e){var t=WYMeditor.INSTANCES[this.title],n=t._iframe.contentWindow.getSelection();startNode=n.getRangeAt(0).startContainer,jQuery(startNode).parentsOrSelf(WYMeditor.MAIN_CONTAINERS.join(","))[0]||jQuery(startNode).parentsOrSelf("li")||e.keyCode==WYMeditor.KEY.ENTER||e.keyCode==WYMeditor.KEY.LEFT||e.keyCode==WYMeditor.KEY.UP||e.keyCode==WYMeditor.KEY.RIGHT||e.keyCode==WYMeditor.KEY.DOWN||e.keyCode==WYMeditor.KEY.BACKSPACE||e.keyCode==WYMeditor.KEY.DELETE||t._exec(WYMeditor.FORMAT_BLOCK,WYMeditor.P)},WYMeditor.WymClassOpera.prototype.keyup=function(e){WYMeditor.INSTANCES[this.title]._selected_image=null},WYMeditor.WymClassOpera.prototype.setFocusToNode=function(e){},WYMeditor.WymClassSafari=function(e){this._wym=e,this._class="class",this._newLine="\n"},WYMeditor.WymClassSafari.prototype.initIframe=function(iframe){this._iframe=iframe,this._doc=iframe.contentDocument;var styles=this._doc.styleSheets[0],aCss=eval(this._options.editorStyles);this.addCssRules(this._doc,aCss),this._doc.title=this._wym._index,jQuery("html",this._doc).attr("dir",this._options.direction),this._doc.designMode="on",this.html(this._wym._html),jQuery.isFunction(this._options.preBind)&&this._options.preBind(this),this._wym.bindEvents(),jQuery(this._doc).bind("keydown",this.keydown),jQuery(this._doc).bind("keyup",this.keyup),jQuery.isFunction(this._options.postInit)&&this._options.postInit(this),this.listen()},WYMeditor.WymClassSafari.prototype._exec=function(e,t){if(!this.selected())return!1;switch(e){case WYMeditor.INDENT:case WYMeditor.OUTDENT:var n=this.selected(),i=this._iframe.contentWindow.getSelection(),r=i.anchorNode;if("#text"==r.nodeName&&(r=r.parentNode),n=this.findUp(n,WYMeditor.BLOCKS),r=this.findUp(r,WYMeditor.BLOCKS),n&&n==r&&n.tagName.toLowerCase()==WYMeditor.LI){var a=n.parentNode.parentNode;(n.parentNode.childNodes.length>1||a.tagName.toLowerCase()==WYMeditor.OL||a.tagName.toLowerCase()==WYMeditor.UL)&&this._doc.execCommand(e,"",null)}break;case WYMeditor.INSERT_ORDEREDLIST:case WYMeditor.INSERT_UNORDEREDLIST:this._doc.execCommand(e,"",null);var n=this.selected(),o=this.findUp(n,WYMeditor.MAIN_CONTAINERS);o&&jQuery(o).replaceWith(jQuery(o).html());break;default:t?this._doc.execCommand(e,"",t):this._doc.execCommand(e,"",null)}var o=this.selected();o&&o.tagName.toLowerCase()==WYMeditor.BODY&&this._exec(WYMeditor.FORMAT_BLOCK,WYMeditor.P),this.listen()},WYMeditor.WymClassSafari.prototype.selected=function(){var e=this._iframe.contentWindow.getSelection(),t=e.focusNode;return t?"#text"==t.nodeName?t.parentNode:t:null},WYMeditor.WymClassSafari.prototype.addCssRule=function(e,t){e.insertRule(t.name+" {"+t.css+"}",e.cssRules.length)},WYMeditor.WymClassSafari.prototype.keydown=function(e){var t=WYMeditor.INSTANCES[this.title];if(e.keyCode===WYMeditor.KEY.ENTER){var n=t.selected();if(n){var i=$(n),r=(i.parent(),i.parents(".embedded-item"));if(r.size()){var a=$("<p/>");return i.hasClass("title")?r.before(a):i.hasClass("content")&&r.after(a),t.setFocusToNode(a.get(0)),!1}}}if(e.ctrlKey){if(66==e.keyCode)return t._exec(WYMeditor.BOLD),!1;if(73==e.keyCode)return t._exec(WYMeditor.ITALIC),!1}},WYMeditor.WymClassSafari.prototype.keyup=function(e){var t=WYMeditor.INSTANCES[this.title];t._selected_image=null;var n=null;if(13!=e.keyCode||e.shiftKey||(jQuery(t._doc.body).children(WYMeditor.BR).remove(),(n=t.selected())&&n.tagName.toLowerCase()==WYMeditor.PRE&&t._exec(WYMeditor.FORMAT_BLOCK,WYMeditor.P)),13==e.keyCode&&e.shiftKey&&t._exec("InsertLineBreak"),8!=e.keyCode&&17!=e.keyCode&&46!=e.keyCode&&224!=e.keyCode&&!e.metaKey&&!e.ctrlKey){n=t.selected();var i=n.tagName.toLowerCase();"strong"!=i&&"b"!=i&&"em"!=i&&"i"!=i&&"sub"!=i&&"sup"!=i&&"a"!=i&&"span"!=i||(i=n.parentNode.tagName.toLowerCase()),i!=WYMeditor.BODY&&i!=WYMeditor.DIV||t._exec(WYMeditor.FORMAT_BLOCK,WYMeditor.P)}},WYMeditor.WymClassSafari.prototype.setFocusToNode=function(e){var t=this._iframe.contentDocument.createRange();t.selectNode(e);var n=this._iframe.contentWindow.getSelection();n.addRange(t),n.collapse(e,e.childNodes.length),this._iframe.contentWindow.focus()},WYMeditor.WymClassSafari.prototype.openBlockTag=function(e,t){var t=this.validator.getValidTagAttributes(e,t);if("span"==e&&t.style){var n=this.getTagForStyle(t.style);if(!n)return;this._tag_stack.pop();var e=n;this._tag_stack.push(n),t.style="","string"==typeof t.class&&(t.class=t.class.replace(/apple-style-span/gi,""))}this.output+=this.helper.tag(e,t,!0)},WYMeditor.WymClassSafari.prototype.getTagForStyle=function(e){return/bold/.test(e)?"strong":/italic/.test(e)?"em":/sub/.test(e)?"sub":!!/super/.test(e)&&"sup"},window.WYMeditor=WYMeditor}).call(exports,__webpack_require__(0),__webpack_require__(0))},function(e,t,n){"use strict";(function(e,i,r,a){function o(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=n(336),l=o(s),c=n(338),d=o(c),u=n(339),h=o(u),f=n(17),p=o(f),g=n(4),m=o(g),_=n(3);o(_);n(75);window.JobDAG=l.default;var v=e.View.extend(m.default.LoggableMixin).extend({_logNamespace:"history",className:"history-structure-component",_INITIAL_ZOOM_LEVEL:1,_MIN_ZOOM_LEVEL:.25,_LINK_ID_SEP:"-to-",_VERTEX_NAME_DATA_KEY:"vertex-name",JobItemClass:h.default.JobListItemView,ContentItemClass:p.default.DatasetListItemView,initialize:function(e){this.log(this+"(HistoryStructureComponent).initialize:",e),this.component=e.component,this._liMap={},this._createVertexItems(),this.zoomLevel=e.zoomLevel||this._INITIAL_ZOOM_LEVEL,this.layout=this._createLayout(e.layoutOptions)},_createVertexItems:function(){var e=this;e.component.eachVertex(function(t){var n,i=t.data.job?"job":"copy";"job"===i?n=e._createJobListItem(t):"copy"===i&&(n=e._createContentListItem(t)),e._liMap[t.name]=n}),e.debug("_liMap:",e._liMap)},_createJobListItem:function(e){this.debug("_createJobListItem:",e);var t=this,n=e.data,r=new d.default.Job(n.job),a=i.map(r.get("outputs"),function(e){return 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t={source:e.source,target:e.target};r.links.push(t)}),r},render:function(e){this.debug(this+".render:",e);var t=this;t.$el.html(["<header></header>",'<nav class="controls"></nav>','<figure class="graph"></figure>',"<footer></footer>"].join(""));var n=t.$graph();return t.component.eachVertex(function(e){t._liMap[e.name].render(0).$el.appendTo(n).data(t._VERTEX_NAME_DATA_KEY,e.name)}),t.renderGraph(),this},$graph:function(){return this.$(".graph")},renderGraph:function(e){function t(){n._updateLayout(),n.$graph().css("transform",["scale(",n.zoomLevel,",",n.zoomLevel,")"].join("")).width(n.layout.svg.width).height(n.layout.svg.height),n.renderSVG(),n.component.eachVertex(function(e){var t=n._liMap[e.name],i=n.layout.nodeMap[e.name];t.$el.css({top:i.y,left:i.x})})}this.debug(this+".renderGraph:",e);var n=this;return this.$el.is(":visible")?t():i.delay(t,0),this},_updateLayout:function(){this.debug(this+"._updateLayout:");var 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n=this,i=n.layout,r=d3.select(this.$graph().get(0)).select("svg");r.empty()&&(r=d3.select(this.$graph().get(0)).append("svg")),r.attr("width",i.svg.width).attr("height",i.svg.height);var a=r.selectAll(".connection").data(i.links);return a.enter().append("path").attr("class","connection").attr("id",function(e){return[e.source,e.target].join(n._LINK_ID_SEP)}).on("mouseover",e).on("mouseout",t),a.attr("d",function(e){return n._connectionPath(e)}),r.node()},_connectionPath:function(e){var t=(e.x2-e.x1)/this.layout.svg.width*this.layout.linkHeight;return["M",e.x1,",",e.y1," ","C",e.x1+0,",",e.y1-t," ",e.x2-0,",",e.y2-t," ",e.x2,",",e.y2].join("")},events:{"mouseover .graph > .list-item":function(e){this.highlightConnected(e.currentTarget,!0)},"mouseout  .graph > .list-item":function(e){this.highlightConnected(e.currentTarget,!1)}},highlightConnected:function(e,t){this.debug("highlightConnected",e,t),t=void 0===t||t;var n=this,i=n.component,o=t?r.prototype.addClass:r.prototype.removeClass,s=t?"connection highlighted":"connection",l=o.call(a(e),"highlighted"),c=l.data(n._VERTEX_NAME_DATA_KEY);i.edges({target:c}).forEach(function(e){var t=e.source,i=n._liMap[t];o.call(i.$el,"highlighted"),n.$("#"+t+n._LINK_ID_SEP+c).attr("class",s)}),i.vertices[c].eachEdge(function(e){var t=e.target,i=n._liMap[t];o.call(i.$el,"highlighted"),n.$("#"+c+n._LINK_ID_SEP+t).attr("class",s)})},zoom:function(e){return this.zoomLevel=Math.min(1,Math.max(this._MIN_ZOOM_LEVEL,e)),this.renderGraph()},toString:function(){return"HistoryStructureComponent("+this.model.id+")"}}),y=v.extend({className:v.prototype.className+" vertical",layoutDefaults:i.extend(i.clone(v.prototype.layoutDefaults),{linkAdjX:0,linkAdjY:4}),_updateLayout:function(){this.debug(this+"._updateLayout:");var e=this,t=e.layout;t.linkWidth=t.linkSpacing*i.size(t.nodeMap),t.svg.width=t.linkWidth+t.jobWidth,t.svg.height=0;var n=t.linkWidth,r=0;return i.each(t.nodeMap,function(i,a){i.x=n,i.y=r;var o=e._liMap[a];r+=o.$el.height()+t.jobSpacing}),t.linkHeight=t.svg.height=Math.max(t.svg.height,r),t.links.forEach(function(e){var n=t.nodeMap[e.source],i=t.nodeMap[e.target];e.x1=n.x+t.linkAdjX,e.y1=n.y+t.linkAdjY,e.x2=i.x+t.linkAdjX,e.y2=i.y+t.linkAdjY}),this.debug(JSON.stringify(t,null,"  ")),t},_connectionPath:function(e){var t=(e.y2-e.y1)/this.layout.svg.height*this.layout.linkWidth;return["M",e.x1,",",e.y1," ","C",e.x1-t,",",e.y1+0," ",e.x2-t,",",e.y2-0," 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e.componentViews=e.dag.weakComponentGraphArray().map(function(t){return e._createComponent(t)}),e.componentViews},_createComponent:function(e){return this.log(this+"._createComponent:",e),new(0,this._layoutToComponentClass[this.layout])({model:this.model,component:e})},render:function(e){this.log(this+".render:",e);var t=this;return t.$el.addClass("clear").html(['<div class="controls"></div>','<div class="components"></div>'].join("")),t.componentViews.forEach(function(e){e.render().$el.appendTo(t.$components())}),t},$components:function(){return this.$(".components")},changeLayout:function(e){if(!(e in this._layoutToComponentClass))throw new Error(this+": unknown layout: "+e);return this.layout=e,this._createComponents(),this.render()},toString:function(){return"HistoryStructureView("+this.model.id+")"}});t.default=b}).call(t,n(2),n(1),n(0),n(0))},function(e,t,n){"use strict";(function(e){function i(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var r=n(337),a=i(r),o=n(65),s=i(o),l=a.default.Graph,c=function(t){t=t||{};var n=this;n.filters=[],n._jobsData=[],n._historyContentsMap={},n._toolMap={},n._outputIdToJobMap={},n.noInputJobs=[],n.noOutputJobs=[],n.filteredSetMetadata=[],n.filteredErroredJobs=[],n.dataKeys=["jobs","historyContents","tools"],l.call(n,!0,e.pick(t,n.dataKeys),e.omit(t,n.dataKeys))};c.prototype=new a.default.Graph,c.prototype.constructor=c,(0,s.default)(c),c.prototype.init=function(t){t=t||{};var n=this;return n.options=e.defaults(t,{excludeSetMetadata:!1}),n.filters=n._initFilters(),l.prototype.init.call(n,t),n},c.prototype._initFilters=function(){var t=this,n=[];return t.options.excludeSetMetadata&&(t.filteredSetMetadata=[],n.push(function(e){return"__SET_METADATA__"!==e.job.tool_id||(t.filteredSetMetadata.push(e.job.id),!1)})),t.options.excludeErroredJobs&&(t.filteredErroredJobs=[],n.push(function(e){return"error"!==e.job.state||(t.filteredErroredJobs.push(e.job.id),!1)})),e.isArray(t.options.filters)&&(n=n.concat(t.options.filters)),t.debug("filters len:",n.length),n},c.prototype.read=function(t){var n=this;return e.has(t,"historyContents")&&e.has(t,"jobs")&&e.has(t,"tools")?(n.preprocessHistoryContents(t.historyContents||[]).preprocessTools(t.tools||{}).preprocessJobs(t.jobs||[]),n.createGraph(n._filterJobs()),n):l.prototype.read.call(this,t)},c.prototype.preprocessHistoryContents=function(t){this.info("processing history");var n=this;return n._historyContentsMap={},t.forEach(function(t,i){n._historyContentsMap[t.id]=e.clone(t)}),n},c.prototype.preprocessTools=function(t){this.info("processing tools");var n=this;return n._toolMap={},e.each(t,function(t,i){n._toolMap[i]=e.clone(t)}),n},c.prototype.preprocessJobs=function(t){this.info("processing jobs");var n=this;return n._outputIdToJobMap={},n._jobsData=n.sort(t).map(function(t){return n.preprocessJob(e.clone(t))}),n},c.prototype.sort=function(e){function t(e,t){return e.create_time>t.create_time?1:e.create_time<t.create_time?-1:0}return e.sort(t)},c.prototype.preprocessJob=function(t,n){var i=this,r={job:t};return r.inputs=i._processInputs(t),0===e.size(r.inputs)&&i.noInputJobs.push(t.id),r.outputs=i._processOutputs(t),0===e.size(r.outputs)&&i.noOutputJobs.push(t.id),r.tool=i._toolMap[t.tool_id],r},c.prototype._processInputs=function(t){var n=this,i=t.inputs,r={};return e.each(i,function(t,i){t=e.clone(n._validateInputOutput(t)),t.name=i,t.content=n._historyContentsMap[t.id],r[t.id]=t}),r},c.prototype._validateInputOutput=function(e){if(!e.id)throw new Error("No id on job input/output: ",JSON.stringify(e));if(!e.src||"hda"!==e.src)throw new Error("Bad src on job input/output: ",JSON.stringify(e));return e},c.prototype._processOutputs=function(t){var n=this,i=t.outputs,r={};return e.each(i,function(i,a){i=e.clone(n._validateInputOutput(i)),i.name=a,i.content=n._historyContentsMap[i.id],r[i.id]=i,n._outputIdToJobMap[i.id]=t.id}),r},c.prototype._filterJobs=function(){var e=this;return e._jobsData.filter(function(t,n){return e._filterJob(t,n)})},c.prototype._filterJob=function(e,t){for(var n=this,i=0;i<n.filters.length;i++)if(!n.filters[i].call(n,e))return n.debug("\t job",e.job.id," has been filtered out by function:\n",n.filters[i]),!1;return!0},c.prototype.createGraph=function(t){var n=this;return n.debug("connections:"),e.each(t,function(e){var t=e.job.id;n.debug("\t",t,e),n.createVertex(t,e)}),e.each(t,function(t){var i=t.job.id;e.each(t.inputs,function(e,t){var r=n._outputIdToJobMap[t];if(!r){r=n.createJobLessVertex(t).name}n.createEdge(r,i,n.directed,{dataset:t})})}),n.debug("final graph: 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this.data&&(e.data=this.data),e},o.prototype.toString=function(){return"Vertex("+this.name+")"},o.prototype.eachEdge=function(e){return r(this.edges,e)},o.prototype.toJSON=function(){return{name:this.name,data:this.data}};var d=function(e,t){var n=this;return n.graph=e,n.processFns=t||{vertexEarly:function(e,t){},edge:function(e,t,n){},vertexLate:function(e,t){}},n._cache={},n};d.prototype.search=function(e){var t=this;return e in t._cache?t._cache[e]:(e instanceof o||(e=t.graph.vertices[e]),t._cache[e.name]=t._search(e))},d.prototype._search=function(e,t){return t=t||{discovered:{},edges:[]}},d.prototype.searchTree=function(e){return this._searchTree(this.search(e))},d.prototype._searchTree=function(e){var t=this;return new s(!0,{edges:e.edges,vertices:Object.keys(e.discovered).map(function(e){return t.graph.vertices[e].toJSON()})})};var u=function(e,t){var n=this;return d.call(this,e,t),n};u.prototype=new d,u.prototype.constructor=u,u.prototype._search=function(e,t){function n(e,n){var a=this;i.processFns.edge&&i.processFns.edge.call(i,a,n,t),t.discovered[e.name]||(t.discovered[e.name]=!0,t.edges.push({source:a.name,target:e.name}),r.push(e))}t=t||{discovered:{},edges:[]};var i=this,r=[];for(t.discovered[e.name]=!0,r.push(e);r.length;){var a=r.shift();i.processFns.vertexEarly&&i.processFns.vertexEarly.call(i,a,t),i.graph.eachAdjacent(a,n),i.processFns.vertexLate&&i.processFns.vertexLate.call(i,a,t)}return t};var h=function(e,t){var n=this;return d.call(this,e,t),n};h.prototype=new d,h.prototype.constructor=h,h.prototype._search=function(e,t){function n(e,n){var a=this;r.processFns.edge&&r.processFns.edge.call(r,a,n,t),t.discovered[e.name]||(t.edges.push({source:a.name,target:e.name}),i(e))}function i(e){t.discovered[e.name]=!0,r.processFns.vertexEarly&&r.processFns.vertexEarly.call(r,e,t),t.entryTimes[e.name]=a++,r.graph.eachAdjacent(e,n),r.processFns.vertexLate&&r.processFns.vertexLate.call(r,e,t),t.exitTimes[e.name]=a++}t=t||{discovered:{},edges:[],entryTimes:{},exitTimes:{}};var r=this,a=0;return i(e),t},window.Graph=s,s.prototype.init=function(e){e=e||{};var t=this;return t.allowReflexiveEdges=e.allowReflexiveEdges||!1,t.vertices={},t.numEdges=0,t},s.prototype.read=function(e){if(!e)return this;var t=this;return e.hasOwnProperty("nodes")?t.readNodesAndLinks(e):e.hasOwnProperty("vertices")?t.readVerticesAndEdges(e):t},s.prototype.readNodesAndLinks=function(e){if(!e||!e.hasOwnProperty("nodes"))return this;var t=this;return e.nodes.forEach(function(e){t.createVertex(e.name,e.data)}),(e.links||[]).forEach(function(n,i){var r=e.nodes[n.source].name,a=e.nodes[n.target].name;t.createEdge(r,a,t.directed)}),t},s.prototype.readVerticesAndEdges=function(e){if(!e||!e.hasOwnProperty("vertices"))return this;var t=this;return e.vertices.forEach(function(e){t.createVertex(e.name,e.data)}),(e.edges||[]).forEach(function(e,n){t.createEdge(e.source,e.target,t.directed)}),t},s.prototype.createVertex=function(e,t){return this.vertices[e]?this.vertices[e]:this.vertices[e]=new o(e,t)},s.prototype.createEdge=function(e,t,n,i){var r=e===t;if(!this.allowReflexiveEdges&&r)return null;var o=this.vertices[e],s=this.vertices[t];if(!o||!s)return null;var l=this,c=new a(e,t,i);return o.edges[t]=c,o.degree+=1,l.numEdges+=1,r||n||l.createEdge(t,e,!0),c},s.prototype.edges=function(e){return Array.prototype.concat.apply([],this.eachVertex(function(t){return t.eachEdge(e)}))},s.prototype.eachVertex=function(e){return r(this.vertices,e)},s.prototype.adjacent=function(e){var t=this;return r(e.edges,function(e){return t.vertices[e.target]})},s.prototype.eachAdjacent=function(e,t){var n=this;return r(e.edges,function(i){var r=n.vertices[i.target];return t.call(e,r,i)})},s.prototype.print=function(){var e=this;return console.log("Graph has "+Object.keys(e.vertices).length+" vertices"),e.eachVertex(function(e){console.log(e.toString()),e.eachEdge(function(e){console.log("\t "+e)})}),e},s.prototype.toDOT=function(){var e=this,t=[];return t.push("graph bler {"),e.edges(function(e){t.push("\t"+e.from+" -- "+e.to+";")}),t.push("}"),t.join("\n")},s.prototype.toNodesAndLinks=function(){var e=this,t={};return{nodes:e.eachVertex(function(e,n,i){return t[e.name]=i,e.toJSON()}),links:e.edges(function(e){var n=e.toJSON();return n.source=t[e.source],n.target=t[e.target],n})}},s.prototype.toVerticesAndEdges=function(){var e=this;return{vertices:e.eachVertex(function(e,t){return e.toJSON()}),edges:e.edges(function(e){return e.toJSON()})}},s.prototype.breadthFirstSearch=function(e,t){return new u(this).search(e)},s.prototype.breadthFirstSearchTree=function(e,t){return new u(this).searchTree(e)},s.prototype.depthFirstSearch=function(e,t){return new h(this).search(e)},s.prototype.depthFirstSearchTree=function(e,t){return new h(this).searchTree(e)},s.prototype.weakComponents=function(){var e,t=this,n=this,i=[];for(t.directed&&(n=new s(!1,t.toNodesAndLinks())),e=Object.keys(n.vertices);e.length;){var r=n.vertices[e.shift()];i.push(function(i){var r=new h(n)._search(i);return e=e.filter(function(e){return!(e in r.discovered)}),{vertices:Object.keys(r.discovered).map(function(e){return t.vertices[e].toJSON()}),edges:r.edges.map(function(e){var n=void 0!==t.vertices[e.target].edges[e.source];if(t.directed&&n){var i=e.source;e.source=e.target,e.target=i}return e})}}(r))}return i},s.prototype.weakComponentGraph=function(){var e=this.weakComponents();return new s(this.directed,{vertices:e.reduce(function(e,t){return e.concat(t.vertices)},[]),edges:e.reduce(function(e,t){return e.concat(t.edges)},[])})},s.prototype.weakComponentGraphArray=function(){var e=this;return this.weakComponents().map(function(t){return new s(e.directed,t)})},t.default={Vertex:o,Edge:a,BreadthFirstSearch:u,DepthFirstSearch:h,Graph:s,randGraph:l}},function(e,t,n){"use strict";(function(e,i){function r(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=n(16),o=r(a),s=n(8),l=r(s),c=n(32),d=r(c),u=n(4),h=r(u),f=n(3),p=(r(f),h.default.SearchableModelMixin),g=e.Model.extend(h.default.LoggableMixin).extend(h.default.mixin(p,{_logNamespace:"jobs",defaults:{model_class:"Job",tool_id:null,exit_code:null,inputs:{},outputs:{},params:{},create_time:null,update_time:null,state:l.default.NEW},parse:function(e,t){return e.params=this.parseParams(e.params),e},parseParams:function(e){var t={};return i.each(e,function(e,n){t[n]=JSON.parse(e)}),t},initialize:function(e,t){this.debug(this+"(Job).initialize",e,t),this.set("params",this.parseParams(this.get("params")),{silent:!0}),this.outputCollection=e.outputCollection||new o.default.HistoryContents([]),this._setUpListeners()},_setUpListeners:function(){this.on("change:state",function(e,t){this.log(this+" has changed state:",e,t),this.inReadyState()&&this.trigger("state:ready",e,t,this.previous("state"))})},inReadyState:function(){return i.contains(l.default.READY_STATES,this.get("state"))},hasDetails:function(){return!i.isEmpty(this.get("outputs"))},urlRoot:Galaxy.root+"api/jobs",toString:function(){return["Job(",this.get("id"),":",this.get("tool_id"),")"].join("")}})),m=e.Collection.extend(h.default.LoggableMixin).extend({_logNamespace:"jobs",model:g,urlRoot:Galaxy.root+"api/jobs",url:function(){return this.urlRoot},intialize:function(e,t){console.debug(e,t)},ids:function(){return this.map(function(e){return e.get("id")})},notReady:function(){return this.filter(function(e){return!e.inReadyState()})},haveDetails:function(){return this.all(function(e){return e.hasDetails()})},queueDetailFetching:function(){var e=this,t=new d.default.AjaxQueue(this.map(function(e){return function(){return e.fetch({silent:!0})}}));return t.done(function(){e.trigger("details-loaded")}),t},matches:function(e){return this.filter(function(t){return t.matches(e)})},toString:function(){return["JobCollection(",this.length,")"].join("")}},{fromHistory:function(e){console.debug(this);var t=this,n=new t([]);return n.fetch({data:{history_id:e}}).done(function(){window.queue=n.queueDetailFetching()}),n}});t.default={Job:g,JobCollection:m}}).call(t,n(2),n(1))},function(e,t,n){"use strict";(function(e){function i(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var r=n(21),a=i(r),o=n(340),s=i(o),l=n(4),c=i(l),d=n(3),u=i(d),h=a.default.FoldoutListItemView,f=h.extend({className:h.prototype.className+" job",id:function(){return["job",this.model.get("id")].join("-")},foldoutPanelClass:s.default.DatasetList,initialize:function(e){e.logger&&(this.logger=this.model.logger=e.logger),this.log(this+".initialize:",e),h.prototype.initialize.call(this,e),this.tool=e.tool||{},this.jobData=e.jobData||{},this.linkTarget=e.linkTarget||"_blank"},_swapNewRender:function(e){return h.prototype._swapNewRender.call(this,e),this.model.has("state")&&this.$el.addClass("state-"+this.model.get("state")),this.$el},_getFoldoutPanelOptions:function(){var t=h.prototype._getFoldoutPanelOptions.call(this);return e.extend(t,{collection:this.model.outputCollection,selecting:!1})},_labelParamMap:function(){var t=this.model.get("params"),n={};return 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class="details"></div>',"</div>"]),c.default.wrapTemplate(['<div class="title-bar clear" tabindex="0">','<div class="title">','<span class="name"><%- view.tool.name %></span>',"</div>",'<div class="subtitle">','<span class="description"><%- view.tool.description %></span','<span class="create-time">'," ",(0,u.default)("Created"),": <%= new Date( job.create_time ).toString() %>, ","</span","</div>","</div>"],"job")),n=c.default.wrapTemplate(['<div class="subtitle">','<span class="description"><%- view.tool.description %></span',"</div>"],"job"),i=c.default.wrapTemplate(['<div class="details">','<div class="params">',"<% _.each( view._labelInputMap(), function( input, label ){ %>",'<div class="input" data-input-name="<%- input.name %>" data-input-id="<%- input.id %>">','<label class="prompt"><%- label %></label>','<span class="value"><%- input.content.name %></span>',"</div>","<% }) %>","<% _.each( view._labelParamMap(), function( param, label ){ %>",'<div class="param" data-input-name="<%- param.name %>">','<label class="prompt"><%- label %></label>','<span class="value"><%- param %></span>',"</div>","<% }) %>","</div>","</div>"],"job");return e.extend({},h.prototype.templates,{titleBar:t,subtitle:n,details:i})}(),t.default={JobListItemView:f}}).call(t,n(1))},function(e,t,n){"use strict";function i(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var r=n(38),a=i(r),o=n(17),s=i(o),l=n(4),c=(i(l),n(3)),d=i(c),u=a.default.ListPanel,h=u.extend({_logNamespace:"dataset",viewClass:s.default.DatasetListItemView,className:u.prototype.className+" dataset-list",noneFoundMsg:(0,d.default)("No matching datasets found"),initialize:function(e){u.prototype.initialize.call(this,e)},toString:function(){return"DatasetList("+this.collection+")"}});t.default={DatasetList:h}},function(e,t,n){"use strict";(function(e,i,r){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=n(3),s=a(o),l=n(30),c=a(l),d=n(71),u=a(d),h=n(70),f=a(h),p=n(55),g=a(p),m=n(36),_=a(m),v=n(4),y=a(v),b=n(32),w=a(b);n(342),n(39);var x=e.View.extend(y.default.LoggableMixin).extend({_logNamespace:"history",tagName:"div",className:"history-column flex-column flex-row-container",id:function(){return this.model?"history-column-"+this.model.get("id"):""},initialize:function(e){e=e||{},this.purgeAllowed=!i.isUndefined(e.purgeAllowed)&&e.purgeAllowed,this.panel=e.panel||this.createPanel(e),this.setUpListeners()},createPanel:function(e){return new u.default.HistoryViewEdit(i.defaults(e,{model:this.model,purgeAllowed:this.purgeAllowed,dragItems:!0,$scrollContainer:function(){return this.$el}}))},setUpListeners:function(){var e=this;this.once("rendered",function(){e.trigger("rendered:initial",e)}),this.setUpPanelListeners()},setUpPanelListeners:function(){var e=this;this.listenTo(this.panel,{rendered:function(){e.trigger("rendered",e)},"view:expanded 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class="delete-history">',(0,s.default)("Delete"),"</a></li>","<% } else /* if is deleted */ { %>",'<li><a href="javascript:void(0);" class="undelete-history">',(0,s.default)("Undelete"),"</a></li>","<% } %>","<% if( data.view.purgeAllowed ){ %>",'<li><a href="javascript:void(0);" class="purge-history">',(0,s.default)("Purge"),"</a></li>","<% } %>","</ul>","</div>","<% } %>","</div>"].join(""),{variable:"data"}),toString:function(){return"HistoryViewColumn("+(this.panel?this.panel:"")+")"}}),k=e.View.extend(y.default.LoggableMixin).extend({_logNamespace:"history",className:"multi-panel-history",initialize:function(e){e=e||{},this.log(this+".init",e),this.$el.addClass(this.className),this.options={columnWidth:312,borderWidth:1,columnGap:8,headerHeight:29,footerHeight:0,controlsHeight:20},this.perPage=e.perPage||10,this.hdaQueue=new w.default.NamedAjaxQueue([],!1),this.collection=null,this.columnMap={},this.columnOptions=e.columnOptions||{},this.historySearch=null,this.datasetSearch=null,this.setCollection(e.histories),this.setUpListeners()},setUpListeners:function(){var e=this;this.on("end-of-scroll",function(){e.collection.fetchMore()})},setCollection:function(e){return this.stopListening(this.collection),this.collection=e||new c.default.HistoryCollection,this.setUpCollectionListeners(),this.createColumns(),this.hdaQueue.clear(),this.trigger("new-collection",this),this},addModels:function(e,t,n){n=n||{};var r=this;return e=i.isArray(e)?e:[e],e.forEach(function(e){r.addColumn(e,!1)}),this},setUpCollectionListeners:function(){var e=this;e.listenTo(e.collection,{error:e.errorHandler,add:e.addModels,"all-fetched":e._postFetchAll,"new-current":e.addAsCurrentColumn,"set-as-current":e.setCurrentHistory,"change:deleted change:purged":e.handleDeletedHistory,sort:function(){e.renderColumns(0)}})},_postFetchAll:function(e){if(this.$(".histories-loading-indicator").remove(),!this.historySearch){var t=this.$(".outer-middle");t.scrollLeft(t.scrollLeft()+24)}},setCurrentHistory:function(e){this.log("setCurrentHistory:",e);var t=i.findWhere(this.columnMap,{currentHistory:!0});t&&(t.currentHistory=!1,t.$el.height(""));var n=this.columnMap[this.collection.currentHistoryId];return n.currentHistory=!0,this.collection.sort(),this._recalcFirstColumnHeight(),n},handleDeletedHistory:function(e){if(e.get("deleted")||e.get("purged")){this.log("handleDeletedHistory",this.collection.includeDeleted,e);var t=this,n=t.columnMap[e.id];if(!n)return;n.model.id===this.collection.currentHistoryId||t.collection.includeDeleted||t.removeColumn(n)}},errorHandler:function(e,t,n){if(!t||0!==t.status||0!==t.readyState){if(this.error(e,t,n),i.isString(e)&&i.isString(t)){var r=e,a=t;return _.default.errorModal(r,a,n)}return 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this.setCurrentHistory(e),r.once("rendered",function(){i.queueHdaFetch(r)}),r},removeColumn:function(e,t){if(t=void 0===t||t,this.log("removeColumn",e),e){var n=this,i=this.options.columnWidth+this.options.columnGap;e.$el.fadeOut("fast",function(){t&&(r(this).remove(),n.$(".middle").width(n.$(".middle").width()-i),n.checkColumnsInView(),n._recalcFirstColumnHeight()),n.stopListening(e.panel),n.stopListening(e),delete n.columnMap[e.model.id],e.remove()})}},setUpColumnListeners:function(e){var t=this;t.listenTo(e,{"in-view":t.queueHdaFetch}),t.listenTo(e.panel,{"view:draggable:dragstart":function(e,n,i,r){t._dropData=JSON.parse(e.dataTransfer.getData("text")),t.currentColumnDropTargetOn()},"view:draggable:dragend":function(e,n,i,r){t._dropData=null,t.currentColumnDropTargetOff()},"droptarget:drop":function(e,n,i){var r=t._dropData.filter(function(e){return i.model.contents.isCopyable(e)});t._dropData=null;var a=new w.default.NamedAjaxQueue;0!==i.model.contents.currentPage&&a.add({name:"fetch-front-page",fn:function(){return i.model.contents.fetchPage(0)}}),r.reverse().forEach(function(e){a.add({name:"copy-"+e.id,fn:function(){return i.model.contents.copy(e)}})}),a.start(),a.done(function(e){i.model.fetch()})}})},columnMapLength:function(){return Object.keys(this.columnMap).length},sortedFilteredColumns:function(e){return(e=e||this.filters)&&e.length?this.sortedColumns().filter(function(t,n){return t.currentHistory||i.every(e.map(function(e){return e.call(t)}))}):this.sortedColumns()},sortedColumns:function(){var e=this;return this.collection.map(function(t,n){return e.columnMap[t.id]})},render:function(e){e=void 0!==e?e:this.fxSpeed;var t=this;return t.log(t+".render"),t.$el.html(t.mainTemplate(t)),t.renderColumns(e),t.setUpBehaviors(),t.trigger("rendered",t),t},renderColumns:function(e){e=i.isNumber(e)?e:this.fxSpeed;var t=this,n=t.sortedFilteredColumns(),r=t.$(".middle").empty();return t._addColumns(n,e),t.collection.allFetched||r.append(t.loadingIndicatorTemplate(t)),t.trigger("columns-rendered",n,t),t.datasetSearch&&n.length<=1||(t.checkColumnsInView(),t._recalcFirstColumnHeight()),n},_addColumns:function(e,t){t=i.isNumber(t)?t:this.fxSpeed;var n=this.$(".middle"),r=n.children(".history-column").length;n.width(this._calcMiddleWidth(e.length+r)),e.forEach(function(e,i){e.delegateEvents().render(t).$el.appendTo(n)})},_calcMiddleWidth:function(e){return e*(this.options.columnWidth+this.options.columnGap)+this.options.columnGap+16},queueHdaFetch:function(e){var t=e.model.contents;if(0===t.length&&e.model.contentsShown()){var n={silent:!0},r=i.values(t.storage.allExpanded()).join();r&&(n.details=r),this.hdaQueue.add({name:e.model.id,fn:function(){return t.fetchCurrentPage(n).done(function(){e.panel.renderItems()}).done(function(){f.default.FETCH_STATE_ON_ADD||t.jobStateSummariesCollection.fetch()})}}),this.hdaQueue.running||this.hdaQueue.start()}},queueHdaFetchDetails:function(e){var t=e.model.contents;!(0===t.length&&e.model.contentsShown())&&t.haveDetails()||(this.hdaQueue.add({name:e.model.id,fn:function(){return t.progressivelyFetchDetails().done(function(){e.panel._renderEmptyMessage()})}}),this.hdaQueue.running||this.hdaQueue.start())},renderInfo:function(e){return this.$(".header .header-info").text(e)},events:{"click .done.btn":"close","click .create-new.btn":"create","click #include-deleted":"_clickToggleDeletedHistories","click .order .set-order":"_chooseOrder","click #toggle-deleted":"_clickToggleDeletedDatasets","click #toggle-hidden":"_clickToggleHiddenDatasets"},close:function(e){window.location=Galaxy.root},_clickToggleDeletedHistories:function(e){this.toggleDeletedHistories(r(e.currentTarget).is(":checked")),this.toggleOptionsPopover()},toggleDeletedHistories:function(e){window.location=e?Galaxy.root+"history/view_multiple?include_deleted_histories=True":Galaxy.root+"history/view_multiple"},_clickToggleDeletedDatasets:function(e){this.toggleDeletedDatasets(r(e.currentTarget).is(":checked")),this.toggleOptionsPopover()},toggleDeletedDatasets:function(e){e=void 0!==e&&e,this.sortedFilteredColumns().forEach(function(t,n){i.delay(function(){t.panel.toggleShowDeleted(e,!1)},200*n)})},_clickToggleHiddenDatasets:function(e){this.toggleHiddenDatasets(r(e.currentTarget).is(":checked")),this.toggleOptionsPopover()},toggleHiddenDatasets:function(e){e=void 0!==e&&e,this.sortedFilteredColumns().forEach(function(t,n){i.delay(function(){t.panel.toggleShowHidden(e,!1)},200*n)})},_chooseOrder:function(e){var t=this,n=t.collection,i=r(e.currentTarget).data("order");t.$(".current-order").text(t.orderDescriptions[i]),t.toggleOptionsPopover(),n.setOrder(i);var a=n.slice(0,1);n.fetchFirst().done(function(){n.unshift(a,{silent:!0}),t.createColumns(),t.hdaQueue.clear(),t.render()}),t.once("columns-rendered",t._scrollLeft)},_scrollLeft:function(e){e=i.isNumber(e)?e:0,this.$(".outer-middle").scrollLeft(e)},setUpBehaviors:function(){var e=this;e._moreOptionsPopover(),e.$("#search-histories").searchInput({name:"search-histories",placeholder:(0,s.default)("search histories"),onfirstsearch:function(t){e.$("#search-histories").searchInput("toggle-loading"),e.renderInfo((0,s.default)("loading all histories for search")),e.collection.fetchAll().done(function(){e.$("#search-histories").searchInput("toggle-loading"),e.renderInfo("")})},onsearch:function(t){e.historySearch=t,e.filters=[function(){return this.model.matchesAll(e.historySearch)}],e.renderColumns(0)},onclear:function(t){e.historySearch=null,e.filters=[],e.renderColumns(0)}}),e.$("#search-datasets").searchInput({name:"search-datasets",placeholder:(0,s.default)("search all datasets"),onfirstsearch:function(t){e.hdaQueue.clear(),e.$("#search-datasets").searchInput("toggle-loading"),e.datasetSearch=t,e.sortedFilteredColumns().forEach(function(n){n.panel.searchItems(t),e.queueHdaFetchDetails(n)}),e.hdaQueue.progress(function(t){e.renderInfo([(0,s.default)("searching"),t.curr+1,(0,s.default)("of"),t.total].join(" "))}),e.hdaQueue.deferred.done(function(){e.renderInfo(""),e.$("#search-datasets").searchInput("toggle-loading")})},onsearch:function(t){e.datasetSearch=t,e.sortedFilteredColumns().forEach(function(e){e.panel.searchItems(t)})},onclear:function(t){e.datasetSearch=null,e.sortedFilteredColumns().forEach(function(e){e.panel.clearSearch()})}}),r(window).resize(function(){e._recalcFirstColumnHeight()});var t=i.debounce(function(){var t=e._viewport();e.checkColumnsInView(t),e.checkForEndOfScroll(t)},100);this.$(".middle").parent().scroll(t)},_moreOptionsPopover:function(){return this.$(".open-more-options.btn").popover({container:".header",placement:"bottom",html:!0,content:r(this.optionsPopoverTemplate(this))})},toggleOptionsPopover:function(e){this.$(".open-more-options.btn").popover("toggle")},_recalcFirstColumnHeight:function(){var e=this.$(".history-column").first(),t=this.$(".middle").height(),n=e.find(".panel-controls").height();e.height(t).find(".inner").height(t-n)},_viewport:function(){var e=this.$(".middle").parent(),t=e.offset().left;return{left:t,right:t+e.width()}},columnsInView:function(e){var t=e||this._viewport();return this.sortedFilteredColumns().filter(function(e){return e.currentHistory||e.inView(t.left,t.right)})},checkColumnsInView:function(){this.columnsInView().forEach(function(e){e.trigger("in-view",e)})},checkForEndOfScroll:function(e){e=e||this._viewport();var t=this.$(".middle");t.parent().scrollLeft()+e.right>=t.width()-16&&this.trigger("end-of-scroll")},currentColumnDropTargetOn:function(){var e=this.columnMap[this.collection.currentHistoryId];e&&(e.panel.dataDropped=function(e){},e.panel.dropTargetOn())},currentColumnDropTargetOff:function(){var e=this.columnMap[this.collection.currentHistoryId];e&&(e.panel.dataDropped=u.default.HistoryViewEdit.prototype.dataDrop,e.panel.dropTarget=!1,e.panel.$(".history-drop-target").remove())},toString:function(){return"MultiPanelColumns("+(this.columns?this.columns.length:0)+")"},mainTemplate:i.template(['<div class="header flex-column-container">','<div class="control-column control-column-left flex-column">','<button class="done btn btn-default" tabindex="1">',(0,s.default)("Done"),"</button>",'<div id="search-histories" class="search-control"></div>','<div id="search-datasets" class="search-control"></div>','<a class="open-more-options btn btn-default" tabindex="3">','<span class="fa fa-ellipsis-h"></span>',"</a>","</div>",'<div class="control-column control-column-center flex-column">','<div class="header-info">',"</div>","</div>",'<div class="control-column control-column-right flex-column">','<button class="create-new btn btn-default" tabindex="4">',(0,s.default)("Create new"),"</button> ","</div>","</div>",'<div class="outer-middle flex-row flex-row-container">','<div class="middle flex-column-container flex-row"></div>',"</div>",'<div class="footer flex-column-container"></div>'].join(""),{variable:"view"}),loadingIndicatorTemplate:i.template(['<div class="histories-loading-indicator">','<span class="fa fa-spin fa-spinner"></span>',(0,s.default)("Loading histories"),"...","</div>"].join(""),{variable:"view"}),orderDescriptions:{update_time:(0,s.default)("most recent first"),"update_time-asc":(0,s.default)("least recent first"),name:(0,s.default)("name, a to z"),"name-dsc":(0,s.default)("name, z to a"),size:(0,s.default)("size, large to 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" checked" : "" %>>',(0,s.default)("Include deleted histories"),"</label></div>","<hr />",'<div class="checkbox"><label><input id="toggle-deleted" type="checkbox">',(0,s.default)("Include deleted datasets"),"</label></div>",'<div class="checkbox"><label><input id="toggle-hidden" type="checkbox">',(0,s.default)("Include hidden datasets"),"</label></div>","</div>"].join(""),{variable:"view"})});t.default={MultiPanelColumns:k}}).call(t,n(2),n(1),n(0))},function(e,t,n){"use strict";function i(e,t){return this.currModeIndex=0,this._init(e,t)}var r=n(0),a=function(e){return e&&e.__esModule?e:{default:e}}(r),o=a.default;i.prototype.DATA_KEY="mode-button",i.prototype.defaults={switchModesOnClick:!0},i.prototype._init=function(e,t){if(t=t||{},this.$element=o(e),this.options=o.extend(!0,{},this.defaults,t),!t.modes)throw new Error('ModeButton requires a "modes" array');var n=this;return 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e?this.options.modes[this._getModeIndex(e)]:this.currentMode()},i.prototype.hasMode=function(e){try{return!!this.getMode(e)}catch(e){}return!1},i.prototype.setMode=function(e){return this._setModeByIndex(this._getModeIndex(e))},i.prototype.reset=function(){return this.currModeIndex=0,this.options.initialMode&&(this.currModeIndex=this._getModeIndex(this.options.initialMode)),this._setModeByIndex(this.currModeIndex)},i.prototype.callModeFn=function(e){var t=this.getMode(e).onclick;if(t&&o.type("function"===t))return t.call(this.$element.get(0))},o.fn.modeButton=function(e){if(!this.length)return this;if("object"===o.type(e))return this.map(function(){var t=o(this);return t.data("mode-button",new i(t,e)),this});var t=o(this[0]),n=t.data("mode-button");if(!n)throw new Error("modeButton needs an options object or string name of a function");if(n&&"string"===o.type(e)){var r=e;if(n&&"function"===o.type(n[r]))return n[r].apply(n,o.makeArray(arguments).slice(1))}return n}},function(e,t,n){"use 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class="contents-container"/>').append([t.render(0).$el,e('<div class="additional-info"/>').text(t.model.get("annotation")||"")])},events:i.extend(i.clone(h.prototype.events),{"click .contents-container":function(t){t.stopPropagation(),e(t.currentTarget).find(".list-item .title-bar").click()},"click .icon-btn":function(t){t.stopPropagation();var n=e(t.currentTarget);n.length&&"dropdown"===n.attr("data-toggle")&&n.dropdown("toggle")}}),_clickSectionLink:function(t){var n=e(t.currentTarget).parent().parent().data("section");this.openSection(n)},toString:function(){return"AnnotatedHistoryView("+(this.model?this.model.get("name"):"")+")"}});t.default={AnnotatedHistoryView:f}}).call(t,n(0),n(1))},function(e,t,n){"use strict";(function(e,i,r,a){function o(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=n(5),l=o(s),c=n(345),d=o(c),u=n(346),h=o(u),f=n(47),p=o(f);e.ajaxSettings.traditional=!0,t.default=i.View.extend({grid:null,initialize:function(e){this.grid=new d.default,this.dict_format=e.dict_format,this.title=e.title;var t=this;if(window.add_tag_to_grid_filter=function(e,n){var i=e+(void 0!==n&&""!==n?":"+n:"");r("#advanced-search").is(":visible")||(r("#standard-search").slideToggle("fast"),r("#advanced-search").slideToggle("fast")),t.add_filter_condition("tags",i)},this.dict_format)if(this.setElement("<div/>"),e.url_base&&!e.items){var n=e.url_data||{};a.each(e.filters,function(e,t){n["f-"+t]=e}),r.ajax({url:e.url_base+"?"+r.param(n),success:function(n){n.embedded=e.embedded,n.filters=e.filters||{},t.init_grid(n)}})}else this.init_grid(e);else this.setElement("#grid-container"),this.init_grid(e);e.use_panels&&r("#center").css({padding:"10px",overflow:"auto"})},handle_refresh:function(e){e&&r.inArray("history",e)>-1&&window.top.Galaxy&&window.top.Galaxy.currHistoryPanel&&window.top.Galaxy.currHistoryPanel.loadCurrentHistory()},init_grid:function(e){this.grid.set(e);var t=this.grid.attributes;this.allow_title_display&&t.title&&l.default.setWindowTitle(t.title),this.handle_refresh(t.refresh_frames);var n=this.grid.get("url_base");if(n=n.replace(/^.*\/\/[^\/]+/,""),this.grid.set("url_base",n),this.$el.html(h.default.grid(t)),this.$el.find("#grid-table-header").html(h.default.header(t)),this.$el.find("#grid-table-body").html(h.default.body(t)),this.$el.find("#grid-table-footer").html(h.default.footer(t)),t.message){this.$el.find("#grid-message").html(h.default.message(t));var i=this;t.use_hide_message&&setTimeout(function(){i.$el.find("#grid-message").html("")},5e3)}this.init_grid_elements(),this.init_grid_controls(),window.init_refresh_on_change&&window.init_refresh_on_change()},init_grid_controls:function(){var e=this;this.$el.find(".operation-button").each(function(){r(this).off(),r(this).click(function(){return e.submit_operation(this),!1})}),this.$el.find("input[type=text]").each(function(){r(this).off(),r(this).click(function(){r(this).select()}).keyup(function(){r(this).css("font-style","normal")})}),this.$el.find(".sort-link").each(function(){r(this).off(),r(this).click(function(){return e.set_sort_condition(r(this).attr("sort_key")),!1})}),this.$el.find(".text-filter-form").each(function(){r(this).off(),r(this).submit(function(){var t=r(this).attr("column_key"),n=r("#input-"+t+"-filter"),i=n.val();return n.val(""),e.add_filter_condition(t,i),!1})}),this.$el.find(".text-filter-val > a").each(function(){r(this).off(),r(this).click(function(){return 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e=this.grid.attributes,t=this;this.$el.find(".page-link > a").each(function(){r(this).click(function(){return t.set_page(r(this).attr("page_num")),!1})}),this.$el.find(".use-target").each(function(){r(this).click(function(){return t.execute({href:r(this).attr("href"),target:r(this).attr("target")}),!1})}),0!==e.items.length&&a.each(e.items,function(n,i){var r=t.$("#grid-"+n.encode_id+"-popup").off(),o=new p.default(r);a.each(e.operations,function(e){t._add_operation(o,e,n)})})},_add_operation:function(e,t,n){var i=this,a=n.operation_config[t.label];a.allowed&&t.allow_popup&&e.addItem({html:t.label,href:a.url_args,target:a.target,confirmation_text:t.confirm,func:function(e){e.preventDefault();var a=r(e.target).html();t.onclick?t.onclick(n.encode_id):i.execute(this.findItemByHtml(a))}})},add_filter_condition:function(e,t){if(""===t)return!1;this.grid.add_filter(e,t,!0);var n=r(h.default.filter_element(e,t)),i=this;n.click(function(){r(this).remove(),i.remove_filter_condition(e,t)}),this.$el.find("#"+e+"-filtering-criteria").append(n),this.go_page_one(),this.execute()},remove_filter_condition:function(e,t){this.grid.remove_filter(e,t),this.go_page_one(),this.execute()},set_sort_condition:function(e){var t=this.grid.get("sort_key"),n=e;-1!==t.indexOf(e)&&"-"!==t.substring(0,1)&&(n="-"+e),this.$el.find(".sort-arrow").remove();var i="-"==n.substring(0,1)?"&uarr;":"&darr;",a=r("<span>"+i+"</span>").addClass("sort-arrow");this.$el.find("#"+e+"-header").append(a),this.grid.set("sort_key",n),this.go_page_one(),this.execute()},set_categorical_filter:function(e,t){var n=this.grid.get("categorical_filters")[e],i=this.grid.get("filters")[e],a=this;this.$el.find("."+e+"-filter").each(function(){var o=r.trim(r(this).text()),s=n[o],l=s[e];if(l==t)r(this).empty(),r(this).addClass("current-filter"),r(this).append(o);else if(l==i){r(this).empty();var c=r('<a 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o=[];this.$el.find("input[name=id]:checked").each(function(){o.push(r(this).val())});var s={operation:n,id:o,confirmation_text:t};return"top"!=i.target&&"center"!=i.target||(s=a.extend(s,{href:i.href,target:i.target})),this.execute(s),!0},check_all_items:function(){var e=this.$(".grid-row-select-checkbox"),t=this.$("#check_all").prop("checked");a.each(e,function(e){r(e).prop("checked",t)}),this.init_grid_elements()},go_page_one:function(){var e=this.grid.get("cur_page");null!==e&&void 0!==e&&"all"!==e&&this.grid.set("cur_page",1)},execute:function(e){var t=null,n=null,i=null,a=null,o=null;if(e&&(n=e.href,i=e.operation,t=e.id,a=e.confirmation_text,o=e.target,void 0!==n&&-1!=n.indexOf("operation="))){var s=n.split("?");if(s.length>1)for(var l=s[1],c=l.split("&"),d=0;d<c.length;d++)-1!=c[d].indexOf("operation")?(i=c[d].split("=")[1],i=i.replace(/\+/g," ")):-1!=c[d].indexOf("id")&&(t=c[d].split("=")[1])}return i&&t?!(a&&""!==a&&"None"!=a&&"null"!=a&&!confirm(a))&&(i=i.toLowerCase(),this.grid.set({operation:i,item_ids:t}),"top"==o?window.top.location=n+"?"+r.param(this.grid.get_url_data()):"center"==o?r("#galaxy_main").attr("src",n+"?"+r.param(this.grid.get_url_data())):this.grid.can_async_op(i)||this.dict_format?this.update_grid():this.go_to(o,n),!1):n?(this.go_to(o,n),!1):(this.grid.get("async")||this.dict_format?this.update_grid():this.go_to(o,n),!1)},go_to:function(e,t){var n=this.grid.get("async");this.grid.set("async",!1);var i=this.$el.find("#advanced-search").is(":visible");switch(this.grid.set("advanced_search",i),t||(t=this.grid.get("url_base")+"?"+r.param(this.grid.get_url_data())),this.grid.set({operation:void 0,item_ids:void 0,async:n}),e){case"center":r("#galaxy_main").attr("src",t);break;case"top":window.top.location=t;break;default:window.location=t}},update_grid:function(){var e=this.grid.get("operation")?"POST":"GET";this.$el.find(".loading-elt-overlay").show();var t=this;r.ajax({type:e,url:t.grid.get("url_base"),data:t.grid.get_url_data(),error:function(){alert("Grid refresh failed")},success:function(e){var n=t.grid.get("embedded"),i=t.grid.get("insert"),a=t.$el.find("#advanced-search").is(":visible"),o=t.dict_format?e:r.parseJSON(e);o.embedded=n,o.insert=i,o.advanced_search=a,t.init_grid(o),t.$el.find(".loading-elt-overlay").hide()},complete:function(){t.grid.set({operation:void 0,item_ids:void 0})}})}})}).call(t,n(0),n(2),n(0),n(1))},function(e,t,n){"use strict";(function(e,n,i){Object.defineProperty(t,"__esModule",{value:!0}),t.default=e.Model.extend({defaults:{url_base:"",async:!1,async_ops:[],categorical_filters:[],filters:{},sort_key:null,show_item_checkboxes:!1,advanced_search:!1,cur_page:1,num_pages:1,operation:void 0,item_ids:void 0},can_async_op:function(e){return-1!==n.indexOf(this.attributes.async_ops,e)},add_filter:function(e,t,n){if(n){var i,r=this.attributes.filters[e];if(null===r||void 0===r)i=t;else if("string"==typeof 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diff --git a/static/scripts/bundled/libs.bundled.js b/static/scripts/bundled/libs.bundled.js
index 5d9be26c6ef..adc9e85f0f0 100644
--- a/static/scripts/bundled/libs.bundled.js
+++ b/static/scripts/bundled/libs.bundled.js
@@ -21,7 +21,7 @@
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de=/^(?:input|select|textarea|button)$/i,fe=/^(?:a|area)$/i;lt.fn.extend({prop:function(t,e){return St(this,lt.prop,t,e,arguments.length>1)},removeProp:function(t){return this.each(function(){delete this[lt.propFix[t]||t]})}}),lt.extend({prop:function(t,e,i){var n,r,a=t.nodeType;if(3!==a&&8!==a&&2!==a)return 1===a&&lt.isXMLDoc(t)||(e=lt.propFix[e]||e,r=lt.propHooks[e]),void 0!==i?r&&"set"in r&&void 0!==(n=r.set(t,i,e))?n:t[e]=i:r&&"get"in r&&null!==(n=r.get(t,e))?n:t[e]},propHooks:{tabIndex:{get:function(t){var e=lt.find.attr(t,"tabindex");return e?parseInt(e,10):de.test(t.nodeName)||fe.test(t.nodeName)&&t.href?0:-1}}},propFix:{for:"htmlFor",class:"className"}}),st.optSelected||(lt.propHooks.selected={get:function(t){var e=t.parentNode;return e&&e.parentNode&&e.parentNode.selectedIndex,null},set:function(t){var 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i,n,r=t.options,a=lt.makeArray(e),o=r.length;o--;)n=r[o],(n.selected=lt.inArray(lt.valHooks.option.get(n),a)>-1)&&(i=!0);return i||(t.selectedIndex=-1),a}}}}),lt.each(["radio","checkbox"],function(){lt.valHooks[this]={set:function(t,e){if(lt.isArray(e))return t.checked=lt.inArray(lt(t).val(),e)>-1}},st.checkOn||(lt.valHooks[this].get=function(t){return null===t.getAttribute("value")?"on":t.value})});var ve=/^(?:focusinfocus|focusoutblur)$/;lt.extend(lt.event,{trigger:function(t,e,n,r){var a,o,s,l,u,c,h,d=[n||Z],f=ot.call(t,"type")?t.type:t,p=ot.call(t,"namespace")?t.namespace.split("."):[];if(o=s=n=n||Z,3!==n.nodeType&&8!==n.nodeType&&!ve.test(f+lt.event.triggered)&&(f.indexOf(".")>-1&&(p=f.split("."),f=p.shift(),p.sort()),u=f.indexOf(":")<0&&"on"+f,t=t[lt.expando]?t:new lt.Event(f,"object"==typeof t&&t),t.isTrigger=r?2:3,t.namespace=p.join("."),t.rnamespace=t.namespace?new RegExp("(^|\\.)"+p.join("\\.(?:.*\\.|)")+"(\\.|$)"):null,t.result=void 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m=function(t,e,n,r){if(n){var a=t[e]=i.once(function(){r(e,a),n.apply(this,arguments)});a._callback=n}return t};c.trigger=function(t){if(!this._events)return this;for(var e=Math.max(0,arguments.length-1),i=Array(e),n=0;n<e;n++)i[n]=arguments[n+1];return d(v,this._events,t,void 0,i),this};var v=function(t,e,i,n){if(t){var r=t[e],a=t.all;r&&a&&(a=a.slice()),r&&_(r,n),a&&_(a,[e].concat(n))}return t},_=function(t,e){var i,n=-1,r=t.length,a=e[0],o=e[1],s=e[2];switch(e.length){case 0:for(;++n<r;)(i=t[n]).callback.call(i.ctx);return;case 1:for(;++n<r;)(i=t[n]).callback.call(i.ctx,a);return;case 2:for(;++n<r;)(i=t[n]).callback.call(i.ctx,a,o);return;case 3:for(;++n<r;)(i=t[n]).callback.call(i.ctx,a,o,s);return;default:for(;++n<r;)(i=t[n]).callback.apply(i.ctx,e);return}};c.bind=c.on,c.unbind=c.off,i.extend(e,c);var y=e.Model=function(t,e){var n=t||{};e||(e={}),this.cid=i.uniqueId(this.cidPrefix),this.attributes={},e.collection&&(this.collection=e.collection),e.parse&&(n=this.parse(n,e)||{});var r=i.result(this,"defaults");n=i.defaults(i.extend({},r,n),r),this.set(n,e),this.changed={},this.initialize.apply(this,arguments)};i.extend(y.prototype,c,{changed:null,validationError:null,idAttribute:"id",cidPrefix:"c",initialize:function(){},toJSON:function(t){return i.clone(this.attributes)},sync:function(){return e.sync.apply(this,arguments)},get:function(t){return this.attributes[t]},escape:function(t){return i.escape(this.get(t))},has:function(t){return null!=this.get(t)},matches:function(t){return!!i.iteratee(t,this)(this.attributes)},set:function(t,e,n){if(null==t)return this;var r;if("object"==typeof t?(r=t,n=e):(r={})[t]=e,n||(n={}),!this._validate(r,n))return!1;var a=n.unset,o=n.silent,s=[],l=this._changing;this._changing=!0,l||(this._previousAttributes=i.clone(this.attributes),this.changed={});var u=this.attributes,c=this.changed,h=this._previousAttributes;for(var d in r)e=r[d],i.isEqual(u[d],e)||s.push(d),i.isEqual(h[d],e)?delete c[d]:c[d]=e,a?delete u[d]:u[d]=e;if(this.idAttribute in r&&(this.id=this.get(this.idAttribute)),!o){s.length&&(this._pending=n);for(var f=0;f<s.length;f++)this.trigger("change:"+s[f],this,u[s[f]],n)}if(l)return this;if(!o)for(;this._pending;)n=this._pending,this._pending=!1,this.trigger("change",this,n);return this._pending=!1,this._changing=!1,this},unset:function(t,e){return this.set(t,void 0,i.extend({},e,{unset:!0}))},clear:function(t){var e={};for(var n in this.attributes)e[n]=void 0;return this.set(e,i.extend({},t,{unset:!0}))},hasChanged:function(t){return null==t?!i.isEmpty(this.changed):i.has(this.changed,t)},changedAttributes:function(t){if(!t)return!!this.hasChanged()&&i.clone(this.changed);var e=this._changing?this._previousAttributes:this.attributes,n={};for(var r in t){var a=t[r];i.isEqual(e[r],a)||(n[r]=a)}return!!i.size(n)&&n},previous:function(t){return null!=t&&this._previousAttributes?this._previousAttributes[t]:null},previousAttributes:function(){return i.clone(this._previousAttributes)},fetch:function(t){t=i.extend({parse:!0},t);var e=this,n=t.success;return t.success=function(i){var r=t.parse?e.parse(i,t):i;if(!e.set(r,t))return!1;n&&n.call(t.context,e,i,t),e.trigger("sync",e,i,t)},z(this,t),this.sync("read",this,t)},save:function(t,e,n){var r;null==t||"object"==typeof t?(r=t,n=e):(r={})[t]=e,n=i.extend({validate:!0,parse:!0},n);var a=n.wait;if(r&&!a){if(!this.set(r,n))return!1}else if(!this._validate(r,n))return!1;var o=this,s=n.success,l=this.attributes;n.success=function(t){o.attributes=l;var e=n.parse?o.parse(t,n):t;if(a&&(e=i.extend({},r,e)),e&&!o.set(e,n))return!1;s&&s.call(n.context,o,t,n),o.trigger("sync",o,t,n)},z(this,n),r&&a&&(this.attributes=i.extend({},l,r));var u=this.isNew()?"create":n.patch?"patch":"update";"patch"!==u||n.attrs||(n.attrs=r);var c=this.sync(u,this,n);return this.attributes=l,c},destroy:function(t){t=t?i.clone(t):{};var e=this,n=t.success,r=t.wait,a=function(){e.stopListening(),e.trigger("destroy",e,e.collection,t)};t.success=function(i){r&&a(),n&&n.call(t.context,e,i,t),e.isNew()||e.trigger("sync",e,i,t)};var o=!1;return this.isNew()?i.defer(t.success):(z(this,t),o=this.sync("delete",this,t)),r||a(),o},url:function(){var t=i.result(this,"urlRoot")||i.result(this.collection,"url")||L();if(this.isNew())return t;var e=this.get(this.idAttribute);return t.replace(/[^\/]$/,"$&/")+encodeURIComponent(e)},parse:function(t,e){return t},clone:function(){return new this.constructor(this.attributes)},isNew:function(){return!this.has(this.idAttribute)},isValid:function(t){return this._validate({},i.extend({},t,{validate:!0}))},_validate:function(t,e){if(!e.validate||!this.validate)return!0;t=i.extend({},this.attributes,t);var n=this.validationError=this.validate(t,e)||null;return!n||(this.trigger("invalid",this,n,i.extend(e,{validationError:n})),!1)}}),s(y,{keys:1,values:1,pairs:1,invert:1,pick:0,omit:0,chain:1,isEmpty:1},"attributes");var b=e.Collection=function(t,e){e||(e={}),e.model&&(this.model=e.model),void 0!==e.comparator&&(this.comparator=e.comparator),this._reset(),this.initialize.apply(this,arguments),t&&this.reset(t,i.extend({silent:!0},e))},w={add:!0,remove:!0,merge:!0},x={add:!0,remove:!1},C=function(t,e,i){i=Math.min(Math.max(i,0),t.length);var n,r=Array(t.length-i),a=e.length;for(n=0;n<r.length;n++)r[n]=t[n+i];for(n=0;n<a;n++)t[n+i]=e[n];for(n=0;n<r.length;n++)t[n+a+i]=r[n]};i.extend(b.prototype,c,{model:y,initialize:function(){},toJSON:function(t){return this.map(function(e){return e.toJSON(t)})},sync:function(){return e.sync.apply(this,arguments)},add:function(t,e){return this.set(t,i.extend({merge:!1},e,x))},remove:function(t,e){e=i.extend({},e);var n=!i.isArray(t);t=n?[t]:t.slice();var r=this._removeModels(t,e);return!e.silent&&r.length&&(e.changes={added:[],merged:[],removed:r},this.trigger("update",this,e)),n?r[0]:r},set:function(t,e){if(null!=t){e=i.extend({},w,e),e.parse&&!this._isModel(t)&&(t=this.parse(t,e)||[]);var n=!i.isArray(t);t=n?[t]:t.slice();var r=e.at;null!=r&&(r=+r),r>this.length&&(r=this.length),r<0&&(r+=this.length+1);var a,o,s=[],l=[],u=[],c=[],h={},d=e.add,f=e.merge,p=e.remove,g=!1,m=this.comparator&&null==r&&!1!==e.sort,v=i.isString(this.comparator)?this.comparator:null;for(o=0;o<t.length;o++){a=t[o];var _=this.get(a);if(_){if(f&&a!==_){var y=this._isModel(a)?a.attributes:a;e.parse&&(y=_.parse(y,e)),_.set(y,e),u.push(_),m&&!g&&(g=_.hasChanged(v))}h[_.cid]||(h[_.cid]=!0,s.push(_)),t[o]=_}else d&&(a=t[o]=this._prepareModel(a,e))&&(l.push(a),this._addReference(a,e),h[a.cid]=!0,s.push(a))}if(p){for(o=0;o<this.length;o++)a=this.models[o],h[a.cid]||c.push(a);c.length&&this._removeModels(c,e)}var b=!1,x=!m&&d&&p;if(s.length&&x?(b=this.length!==s.length||i.some(this.models,function(t,e){return t!==s[e]}),this.models.length=0,C(this.models,s,0),this.length=this.models.length):l.length&&(m&&(g=!0),C(this.models,l,null==r?this.length:r),this.length=this.models.length),g&&this.sort({silent:!0}),!e.silent){for(o=0;o<l.length;o++)null!=r&&(e.index=r+o),a=l[o],a.trigger("add",a,this,e);(g||b)&&this.trigger("sort",this,e),(l.length||c.length||u.length)&&(e.changes={added:l,removed:c,merged:u},this.trigger("update",this,e))}return n?t[0]:t}},reset:function(t,e){e=e?i.clone(e):{};for(var n=0;n<this.models.length;n++)this._removeReference(this.models[n],e);return e.previousModels=this.models,this._reset(),t=this.add(t,i.extend({silent:!0},e)),e.silent||this.trigger("reset",this,e),t},push:function(t,e){return this.add(t,i.extend({at:this.length},e))},pop:function(t){var e=this.at(this.length-1);return this.remove(e,t)},unshift:function(t,e){return this.add(t,i.extend({at:0},e))},shift:function(t){var e=this.at(0);return this.remove(e,t)},slice:function(){return a.apply(this.models,arguments)},get:function(t){if(null!=t)return this._byId[t]||this._byId[this.modelId(t.attributes||t)]||t.cid&&this._byId[t.cid]},has:function(t){return null!=this.get(t)},at:function(t){return t<0&&(t+=this.length),this.models[t]},where:function(t,e){return this[e?"find":"filter"](t)},findWhere:function(t){return this.where(t,!0)},sort:function(t){var e=this.comparator;if(!e)throw new Error("Cannot sort a set without a comparator");t||(t={});var n=e.length;return i.isFunction(e)&&(e=i.bind(e,this)),1===n||i.isString(e)?this.models=this.sortBy(e):this.models.sort(e),t.silent||this.trigger("sort",this,t),this},pluck:function(t){return this.map(t+"")},fetch:function(t){t=i.extend({parse:!0},t);var e=t.success,n=this;return t.success=function(i){var r=t.reset?"reset":"set";n[r](i,t),e&&e.call(t.context,n,i,t),n.trigger("sync",n,i,t)},z(this,t),this.sync("read",this,t)},create:function(t,e){e=e?i.clone(e):{};var n=e.wait;if(!(t=this._prepareModel(t,e)))return!1;n||this.add(t,e);var r=this,a=e.success;return e.success=function(t,e,i){n&&r.add(t,i),a&&a.call(i.context,t,e,i)},t.save(null,e),t},parse:function(t,e){return t},clone:function(){return new this.constructor(this.models,{model:this.model,comparator:this.comparator})},modelId:function(t){return t[this.model.prototype.idAttribute||"id"]},_reset:function(){this.length=0,this.models=[],this._byId={}},_prepareModel:function(t,e){if(this._isModel(t))return t.collection||(t.collection=this),t;e=e?i.clone(e):{},e.collection=this;var n=new this.model(t,e);return n.validationError?(this.trigger("invalid",this,n.validationError,e),!1):n},_removeModels:function(t,e){for(var i=[],n=0;n<t.length;n++){var r=this.get(t[n]);if(r){var a=this.indexOf(r);this.models.splice(a,1),this.length--,delete this._byId[r.cid];var o=this.modelId(r.attributes);null!=o&&delete this._byId[o],e.silent||(e.index=a,r.trigger("remove",r,this,e)),i.push(r),this._removeReference(r,e)}}return i},_isModel:function(t){return t instanceof y},_addReference:function(t,e){this._byId[t.cid]=t;var i=this.modelId(t.attributes);null!=i&&(this._byId[i]=t),t.on("all",this._onModelEvent,this)},_removeReference:function(t,e){delete this._byId[t.cid];var i=this.modelId(t.attributes);null!=i&&delete this._byId[i],this===t.collection&&delete t.collection,t.off("all",this._onModelEvent,this)},_onModelEvent:function(t,e,i,n){if(e){if(("add"===t||"remove"===t)&&i!==this)return;if("destroy"===t&&this.remove(e,n),"change"===t){var r=this.modelId(e.previousAttributes()),a=this.modelId(e.attributes);r!==a&&(null!=r&&delete this._byId[r],null!=a&&(this._byId[a]=e))}}this.trigger.apply(this,arguments)}}),s(b,{forEach:3,each:3,map:3,collect:3,reduce:0,foldl:0,inject:0,reduceRight:0,foldr:0,find:3,detect:3,filter:3,select:3,reject:3,every:3,all:3,some:3,any:3,include:3,includes:3,contains:3,invoke:0,max:3,min:3,toArray:1,size:1,first:3,head:3,take:3,initial:3,rest:3,tail:3,drop:3,last:3,without:0,difference:0,indexOf:3,shuffle:1,lastIndexOf:3,isEmpty:1,chain:1,sample:3,partition:3,groupBy:3,countBy:3,sortBy:3,indexBy:3,findIndex:3,findLastIndex:3},"models");var k=e.View=function(t){this.cid=i.uniqueId("view"),i.extend(this,i.pick(t,T)),this._ensureElement(),this.initialize.apply(this,arguments)},S=/^(\S+)\s*(.*)$/,T=["model","collection","el","id","attributes","className","tagName","events"];i.extend(k.prototype,c,{tagName:"div",$:function(t){return this.$el.find(t)},initialize:function(){},render:function(){return this},remove:function(){return this._removeElement(),this.stopListening(),this},_removeElement:function(){this.$el.remove()},setElement:function(t){return this.undelegateEvents(),this._setElement(t),this.delegateEvents(),this},_setElement:function(t){this.$el=t instanceof e.$?t:e.$(t),this.el=this.$el[0]},delegateEvents:function(t){if(t||(t=i.result(this,"events")),!t)return this;this.undelegateEvents();for(var e in t){var n=t[e];if(i.isFunction(n)||(n=this[n]),n){var r=e.match(S);this.delegate(r[1],r[2],i.bind(n,this))}}return this},delegate:function(t,e,i){return this.$el.on(t+".delegateEvents"+this.cid,e,i),this},undelegateEvents:function(){return this.$el&&this.$el.off(".delegateEvents"+this.cid),this},undelegate:function(t,e,i){return this.$el.off(t+".delegateEvents"+this.cid,e,i),this},_createElement:function(t){return document.createElement(t)},_ensureElement:function(){if(this.el)this.setElement(i.result(this,"el"));else{var t=i.extend({},i.result(this,"attributes"));this.id&&(t.id=i.result(this,"id")),this.className&&(t.class=i.result(this,"className")),this.setElement(this._createElement(i.result(this,"tagName"))),this._setAttributes(t)}},_setAttributes:function(t){this.$el.attr(t)}}),e.sync=function(t,n,r){var a=A[t];i.defaults(r||(r={}),{emulateHTTP:e.emulateHTTP,emulateJSON:e.emulateJSON});var o={type:a,dataType:"json"};if(r.url||(o.url=i.result(n,"url")||L()),null!=r.data||!n||"create"!==t&&"update"!==t&&"patch"!==t||(o.contentType="application/json",o.data=JSON.stringify(r.attrs||n.toJSON(r))),r.emulateJSON&&(o.contentType="application/x-www-form-urlencoded",o.data=o.data?{model:o.data}:{}),r.emulateHTTP&&("PUT"===a||"DELETE"===a||"PATCH"===a)){o.type="POST",r.emulateJSON&&(o.data._method=a);var s=r.beforeSend;r.beforeSend=function(t){if(t.setRequestHeader("X-HTTP-Method-Override",a),s)return s.apply(this,arguments)}}"GET"===o.type||r.emulateJSON||(o.processData=!1);var l=r.error;r.error=function(t,e,i){r.textStatus=e,r.errorThrown=i,l&&l.call(r.context,t,e,i)};var u=r.xhr=e.ajax(i.extend(o,r));return n.trigger("request",n,u,r),u};var A={create:"POST",update:"PUT",patch:"PATCH",delete:"DELETE",read:"GET"};e.ajax=function(){return e.$.ajax.apply(e.$,arguments)};var M=e.Router=function(t){t||(t={}),t.routes&&(this.routes=t.routes),this._bindRoutes(),this.initialize.apply(this,arguments)},E=/\((.*?)\)/g,O=/(\(\?)?:\w+/g,$=/\*\w+/g,D=/[\-{}\[\]+?.,\\\^$|#\s]/g;i.extend(M.prototype,c,{initialize:function(){},route:function(t,n,r){i.isRegExp(t)||(t=this._routeToRegExp(t)),i.isFunction(n)&&(r=n,n=""),r||(r=this[n]);var a=this;return e.history.route(t,function(i){var o=a._extractParameters(t,i);!1!==a.execute(r,o,n)&&(a.trigger.apply(a,["route:"+n].concat(o)),a.trigger("route",n,o),e.history.trigger("route",a,n,o))}),this},execute:function(t,e,i){t&&t.apply(this,e)},navigate:function(t,i){return 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this.$el.height()-this.scroll_elt.scrollTop()-this.scroll_elt.height()<=0}}),m=p.extend({initialize:function(t){p.prototype.initialize.call(this,t),this.scroll_elt=this.$el.css({position:"relative",overflow:"scroll",height:t.height||"500px"})},scrolled_to_bottom:function(){return this.$el.scrollTop()+this.$el.innerHeight()>=this.el.scrollHeight}}),v=t.View.extend({col:{chrom:null,start:null,end:null},url_viz:null,dataset_id:null,genome_build:null,file_ext:null,initialize:function(t){var e=parent.Galaxy;if(e&&e.modal&&(this.modal=e.modal),e&&e.frame&&(this.frame=e.frame),this.modal&&this.frame){var i=t.model,n=i.get("metadata");if(i.get("file_ext")){if(this.file_ext=i.get("file_ext"),"bed"==this.file_ext){if(!(n.get("chromCol")&&n.get("startCol")&&n.get("endCol")))return void console.log("TabularButtonTrackster : Bed-file metadata incomplete.");this.col.chrom=n.get("chromCol")-1,this.col.start=n.get("startCol")-1,this.col.end=n.get("endCol")-1}if("vcf"==this.file_ext){var r=function(t,e){for(var i=0;i<e.length;i++)if(e[i].match(t))return i;return-1};if(this.col.chrom=r("Chrom",n.get("column_names")),this.col.start=r("Pos",n.get("column_names")),this.col.end=null,-1==this.col.chrom||-1==this.col.start)return void console.log("TabularButtonTrackster : VCF-file metadata incomplete.")}if(void 0!==this.col.chrom){if(!i.id)return void console.log("TabularButtonTrackster : Dataset identification is missing.");if(this.dataset_id=i.id,!i.get("url_viz"))return void console.log("TabularButtonTrackster : Url for visualization controller is missing.");this.url_viz=i.get("url_viz"),i.get("genome_build")&&(this.genome_build=i.get("genome_build"));var a=new u.default.IconButtonView({model:new u.default.IconButton({title:(0,s.default)("Visualize"),icon_class:"chart_curve",id:"btn_viz"})});this.setElement(t.$el),this.$el.append(a.render().$el),this.hide()}}}},events:{"mouseover tr":"show",mouseleave:"hide"},show:function(t){var e=this;if(null!==this.col.chrom){var 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n.render(),e&&(e.append(n.$el),n.expand_to_container()),n};e.default={Dataset:h,TabularDataset:d,DatasetCollection:f,TabularDatasetChunkedView:p,createTabularDatasetChunkedView:_}}).call(e,i(2),i(1),i(0))},function(t,e,i){"use strict";(function(t,n){function r(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var a=i(3),o=r(a),s=i(1),l=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var i in t)Object.prototype.hasOwnProperty.call(t,i)&&(e[i]=t[i]);return e.default=t,e}(s),u=i(22),c=r(u),h=i(45),d=r(h),f=i(46),p=r(f),g=i(24),m=r(g),v=i(76),_=r(v),y=i(6),b=(r(y),{toJSON:function(){var t=this,e={};return l.each(t.constructor.to_json_keys,function(i){var n=t.get(i);i in t.constructor.to_json_mappers&&(n=t.constructor.to_json_mappers[i](n,t)),e[i]=n}),e}}),w=function(e,i){var n=new m.default({url_base:Galaxy.root+"visualization/list_history_datasets",filters:e,embedded:!0}),r=new m.default({url_base:Galaxy.root+"visualization/list_library_datasets",embedded:!0}),a=new _.default.View;a.add({id:"histories",title:(0,o.default)("Histories"),$el:t("<div/>").append(n.$el)}),a.add({id:"libraries",title:(0,o.default)("Libraries"),$el:t("<div/>").append(r.$el)}),Galaxy.modal.show({title:(0,o.default)("Select datasets for new tracks"),body:a.$el,closing_events:!0,buttons:{Cancel:function(){Galaxy.modal.hide()},Add:function(){var e=[];a.$("input.grid-row-select-checkbox[name=id]:checked").each(function(){window.console.log(t(this).val()),e[e.length]=t.ajax({url:Galaxy.root+"api/datasets/"+t(this).val(),dataType:"json",data:{data_type:"track_config",hda_ldda:"histories"==a.current()?"hda":"ldda"}})}),t.when.apply(t,e).then(function(){var e=arguments[0]instanceof Array?t.map(arguments,function(t){return t[0]}):[arguments[0]];i(e)}),Galaxy.modal.hide()}}})},x=function(t){this.default_font=void 0!==t?t:"9px Monaco, Lucida Console, 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e=this.attributes.obj_cache,i=this.attributes.key_ary,n=t.toString(),r=l.indexOf(i,function(t){return t.toString()===n});return-1!==r&&(e[n].stale?(i.splice(r,1),delete e[n]):this.move_key_to_end(t,r)),e[n]},set_elt:function(t,e){var i=this.attributes.obj_cache,n=this.attributes.key_ary,r=t.toString(),a=this.attributes.num_elements;if(!i[r]){if(n.length>=a){delete i[n.shift().toString()]}n.push(t)}return i[r]=e,e},move_key_to_end:function(t,e){this.attributes.key_ary.splice(e,1),this.attributes.key_ary.push(t)},clear:function(){this.attributes.obj_cache={},this.attributes.key_ary=[]},size:function(){return this.attributes.key_ary.length},most_recently_added:function(){return 0===this.size()?null:this.attributes.key_ary[this.attributes.key_ary.length-1]}}),k=C.extend({defaults:l.extend({},C.prototype.defaults,{dataset:null,genome:null,init_data:null,min_region_size:200,filters_manager:null,data_type:"data",data_mode_compatible:function(t,e){return!0},can_subset:function(t){return!1}}),initialize:function(t){C.prototype.initialize.call(this);var e=this.get("init_data");e&&this.add_data(e)},add_data:function(t){this.get("num_elements")<t.length&&this.set("num_elements",t.length);var e=this;l.each(t,function(t){e.set_data(t.region,t)})},data_is_ready:function(){var e=this.get("dataset"),i=t.Deferred(),n="raw_data"===this.get("data_type")?"state":"data"===this.get("data_type")?"converted_datasets_state":"error",r=new d.default.ServerStateDeferred({ajax_settings:{url:this.get("dataset").url(),data:{hda_ldda:e.get("hda_ldda"),data_type:n},dataType:"json"},interval:5e3,success_fn:function(t){return"pending"!==t}});return t.when(r.go()).then(function(t){i.resolve("ok"===t||"data"===t)}),i},search_features:function(e){var i=this.get("dataset"),n={query:e,hda_ldda:i.get("hda_ldda"),data_type:"features"};return t.getJSON(i.url(),n)},load_data:function(e,i,n,r){var a=this.get("dataset"),o={data_type:this.get("data_type"),chrom:e.get("chrom"),low:e.get("start"),high:e.get("end"),mode:i,resolution:n,hda_ldda:a.get("hda_ldda")};t.extend(o,r);var s=this.get("filters_manager");if(s){for(var l=[],u=s.filters,c=0;c<u.length;c++)l.push(u[c].name);o.filter_cols=JSON.stringify(l)}var h=this,d=t.getJSON(a.url(),o,function(t){t.region=e,h.set_data(e,t)});return this.set_data(e,d),d},get_data:function(t,e,i,n){var r=this.get_elt(t);if(r&&(d.default.is_deferred(r)||this.get("data_mode_compatible")(r,e)))return r;for(var a,o,s=this.get("key_ary"),l=this.get("obj_cache"),u=0;u<s.length;u++)if(a=s[u],a.contains(t)&&(o=!0,r=l[a.toString()],d.default.is_deferred(r)||this.get("data_mode_compatible")(r,e)&&this.get("can_subset")(r))){if(this.move_key_to_end(a,u),!d.default.is_deferred(r)){var c=this.subset_entry(r,t);this.set_data(t,c),r=c}return r}if(!o&&t.length()<this.attributes.min_region_size){t=t.copy();var h=this.most_recently_added();!h||t.get("start")>h.get("start")?t.set("end",t.get("start")+this.attributes.min_region_size):t.set("start",t.get("end")-this.attributes.min_region_size),t.set("genome",this.attributes.genome),t.trim()}return this.load_data(t,e,i,n)},set_data:function(t,e){this.set_elt(t,e)},DEEP_DATA_REQ:"deep",BROAD_DATA_REQ:"breadth",get_more_data:function(e,i,n,r,a){var o=this._mark_stale(e);if(!o||!this.get("data_mode_compatible")(o,i))return void console.log("ERROR: problem with getting more data: current data is not compatible");var s=e.get("start");a===this.DEEP_DATA_REQ?t.extend(r,{start_val:o.data.length+1}):a===this.BROAD_DATA_REQ&&(s=(o.max_high?o.max_high:o.data[o.data.length-1][2])+1);var l=e.copy().set("start",s),u=this,c=this.load_data(l,i,n,r),h=t.Deferred();return this.set_data(e,h),t.when(c).then(function(t){t.data&&(t.data=o.data.concat(t.data),t.max_low&&(t.max_low=o.max_low),t.message&&(t.message=t.message.replace(/[0-9]+/,t.data.length))),u.set_data(e,t),h.resolve(t)}),h},can_get_more_detailed_data:function(t){var e=this.get_elt(t);return"bigwig"===e.dataset_type&&e.data.length<8e3},get_more_detailed_data:function(t,e,i,n,r){var a=this._mark_stale(t);return a?(r||(r={}),"bigwig"===a.dataset_type&&(r.num_samples=1e3*n),this.load_data(t,e,i,r)):void console.log("ERROR getting more detailed data: no current data")},_mark_stale:function(t){var e=this.get_elt(t);return e||console.log("ERROR: no data to mark as stale: ",this.get("dataset"),t.toString()),e.stale=!0,e},get_genome_wide_data:function(e){var i=this,n=!0,r=l.map(e.get("chroms_info").chrom_info,function(t){var e=i.get_elt(new A({chrom:t.chrom,start:0,end:t.len}));return e||(n=!1),e});if(n)return r;var a=t.Deferred();return t.getJSON(this.get("dataset").url(),{data_type:"genome_data"},function(t){i.add_data(t.data),a.resolve(t.data)}),a},subset_entry:function(t,e){var i={bigwig:function(t,e){return l.filter(t,function(t){return t[0]>=e.get("start")&&t[0]<=e.get("end")})},refseq:function(e,i){var n=i.get("start")-t.region.get("start");return t.data.slice(n,n+i.length())}},n=t.data;return!t.region.same(e)&&t.dataset_type in i&&(n=i[t.dataset_type](t.data,e)),{region:e,data:n,dataset_type:t.dataset_type}}}),S=k.extend({initialize:function(t){var e=new n.Model;e.urlRoot=t.data_url,this.set("dataset",e)},load_data:function(t,e,i,n){return t.length()<=1e5?k.prototype.load_data.call(this,t,e,i,n):{data:null,region:t}}}),T=n.Model.extend({defaults:{name:null,key:null,chroms_info:null},initialize:function(t){this.id=t.dbkey},get_chroms_info:function(){return this.attributes.chroms_info.chrom_info},get_chrom_region:function(t){var e=l.find(this.get_chroms_info(),function(e){return e.chrom===t});return new A({chrom:e.chrom,end:e.len})},get_chrom_len:function(t){return l.find(this.get_chroms_info(),function(e){return e.chrom===t}).len}}),A=n.Model.extend({defaults:{chrom:null,start:0,end:0,str_val:null,genome:null},same:function(t){return this.attributes.chrom===t.get("chrom")&&this.attributes.start===t.get("start")&&this.attributes.end===t.get("end")},initialize:function(t){if(t.from_str){var e=t.from_str.split(":"),i=e[0],n=e[1].split("-");this.set({chrom:i,start:parseInt(n[0],10),end:parseInt(n[1],10)})}this.attributes.str_val=this.get("chrom")+":"+this.get("start")+"-"+this.get("end"),this.on("change",function(){this.attributes.str_val=this.get("chrom")+":"+this.get("start")+"-"+this.get("end")},this)},copy:function(){return new A({chrom:this.get("chrom"),start:this.get("start"),end:this.get("end")})},length:function(){return this.get("end")-this.get("start")},toString:function(){return this.attributes.str_val},toJSON:function(){return{chrom:this.get("chrom"),start:this.get("start"),end:this.get("end")}},compute_overlap:function(t){var e=this.get("chrom"),i=t.get("chrom"),n=this.get("start"),r=t.get("start"),a=this.get("end"),o=t.get("end");return e&&i&&e!==i?A.overlap_results.DIF_CHROMS:n<r?a<r?A.overlap_results.BEFORE:a<o?A.overlap_results.OVERLAP_START:A.overlap_results.CONTAINS:n>r?n>o?A.overlap_results.AFTER:a<=o?A.overlap_results.CONTAINED_BY:A.overlap_results.OVERLAP_END:a>=o?A.overlap_results.CONTAINS:A.overlap_results.CONTAINED_BY},trim:function(t){if(this.attributes.start<0&&(this.attributes.start=0),this.attributes.genome){var e=this.attributes.genome.get_chrom_len(this.attributes.chrom);this.attributes.end>e&&(this.attributes.end=e-1)}return this},contains:function(t){return this.compute_overlap(t)===A.overlap_results.CONTAINS},overlaps:function(t){return 0===l.intersection([this.compute_overlap(t)],[A.overlap_results.DIF_CHROMS,A.overlap_results.BEFORE,A.overlap_results.AFTER]).length}},{overlap_results:{DIF_CHROMS:1e3,BEFORE:1001,CONTAINS:1002,OVERLAP_START:1003,OVERLAP_END:1004,CONTAINED_BY:1005,AFTER:1006}}),M=n.Collection.extend({model:A}),E=n.Model.extend({defaults:{region:null,note:""},initialize:function(t){this.set("region",new A(t.region))}}),O=n.Collection.extend({model:E}),$=n.Model.extend(b).extend({defaults:{mode:"Auto"},initialize:function(t){this.set("dataset",new c.default.Dataset(t.dataset));var e=[{key:"name",default_value:this.get("dataset").get("name")},{key:"color"},{key:"min_value",label:"Min Value",type:"float",default_value:0},{key:"max_value",label:"Max Value",type:"float",default_value:1}];this.set("config",p.default.ConfigSettingCollection.from_models_and_saved_values(e,t.prefs));var i=this.get("preloaded_data");i=i?i.data:[],this.set("data_manager",new k({dataset:this.get("dataset"),init_data:i}))}},{to_json_keys:["track_type","dataset","prefs","mode","filters","tool_state"],to_json_mappers:{prefs:function(t,e){return 0===l.size(t)&&(t={name:e.get("config").get("name").get("value"),color:e.get("config").get("color").get("value")}),t},dataset:function(t){return{id:t.id,hda_ldda:t.get("hda_ldda")}}}}),D=n.Collection.extend({model:$}),j=n.Model.extend({defaults:{title:"",type:""},urlRoot:Galaxy.root+"api/visualizations",save:function(){return t.ajax({url:this.url(),type:"POST",dataType:"json",data:{vis_json:JSON.stringify(this)}})}}),P=j.extend(b).extend({defaults:l.extend({},j.prototype.defaults,{dbkey:"",drawables:null,bookmarks:null,viewport:null}),initialize:function(t){this.set("drawables",new D(t.tracks));var e=[];this.set("config",p.default.ConfigSettingCollection.from_models_and_saved_values(e,t.prefs)),this.unset("tracks"),this.get("drawables").each(function(t){t.unset("preloaded_data")})},add_tracks:function(t){this.get("drawables").add(t)}},{to_json_keys:["view","viewport","bookmarks"],to_json_mappers:{view:function(t,e){return{obj_type:"View",prefs:{name:e.get("title"),content_visible:!0},drawables:e.get("drawables")}}}}),R=n.Router.extend({initialize:function(t){this.view=t.view,this.route(/([\w]+)$/,"change_location"),this.route(/([\w\+]+\:[\d,]+-[\d,]+)$/,"change_location");var e=this;e.view.on("navigate",function(t){e.navigate(t)})},change_location:function(t){this.view.go_to(t)}});e.default={BackboneTrack:$,BrowserBookmark:E,BrowserBookmarkCollection:O,Cache:C,CanvasManager:x,Genome:T,GenomeDataManager:k,GenomeRegion:A,GenomeRegionCollection:M,GenomeVisualization:P,GenomeReferenceDataManager:S,TrackBrowserRouter:R,Visualization:j,select_datasets:w}}).call(e,i(0),i(2))},function(t,e,i){"use strict";(function(t,n,r,a){function o(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var s=i(5),l=o(s),u=i(157),c=o(u),h=i(158),d=o(h),f=i(47),p=o(f);t.ajaxSettings.traditional=!0,e.default=n.View.extend({grid:null,initialize:function(t){this.grid=new c.default,this.title=t.title;var e=this;if(window.add_tag_to_grid_filter=function(t,i){var n=t+(void 0!==i&&""!==i?":"+i:"");r("#advanced-search").is(":visible")||(r("#standard-search").slideToggle("fast"),r("#advanced-search").slideToggle("fast")),e.add_filter_condition("tags",n)},this.setElement("<div/>"),t.url_base&&!t.items){var i=t.url_data||{};a.each(t.filters,function(t,e){i["f-"+e]=t}),r.ajax({url:t.url_base+"?"+r.param(i),success:function(i){i.embedded=t.embedded,i.filters=t.filters||{},e.init_grid(i)}})}else this.init_grid(t);t.use_panels&&r("#center").css({padding:"10px",overflow:"auto"})},handle_refresh:function(t){t&&r.inArray("history",t)>-1&&window.top.Galaxy&&window.top.Galaxy.currHistoryPanel&&window.top.Galaxy.currHistoryPanel.loadCurrentHistory()},init_grid:function(t){this.grid.set(t);var e=this.grid.attributes;this.allow_title_display&&e.title&&l.default.setWindowTitle(e.title),this.handle_refresh(e.refresh_frames);var i=this.grid.get("url_base");if(i=i.replace(/^.*\/\/[^\/]+/,""),this.grid.set("url_base",i),this.$el.html(d.default.grid(e)),this.$el.find("#grid-table-header").html(d.default.header(e)),this.$el.find("#grid-table-body").html(d.default.body(e)),this.$el.find("#grid-table-footer").html(d.default.footer(e)),e.message){this.$el.find("#grid-message").html(d.default.message(e));var n=this;e.use_hide_message&&setTimeout(function(){n.$el.find("#grid-message").html("")},5e3)}this.init_grid_elements(),this.init_grid_controls(),window.init_refresh_on_change&&window.init_refresh_on_change()},init_grid_controls:function(){var t=this;this.$el.find(".operation-button").each(function(){r(this).off(),r(this).click(function(){return 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n&&e?!(a&&""!==a&&"None"!=a&&"null"!=a&&!confirm(a))&&(n=n.toLowerCase(),this.grid.set({operation:n,item_ids:e}),"top"==o?window.top.location=i+"?"+r.param(this.grid.get_url_data()):"center"==o?r("#galaxy_main").attr("src",i+"?"+r.param(this.grid.get_url_data())):this.update_grid(),!1):i?(this.go_to(o,i),!1):(this.update_grid(),!1)},go_to:function(t,e){var i=this.$el.find("#advanced-search").is(":visible");switch(this.grid.set("advanced_search",i),e||(e=this.grid.get("url_base")+"?"+r.param(this.grid.get_url_data())),this.grid.set({operation:void 0,item_ids:void 0}),t){case"center":r("#galaxy_main").attr("src",e);break;case"top":window.top.location=e;break;default:window.location=e}},update_grid:function(){var t=this.grid.get("operation")?"POST":"GET";this.$el.find(".loading-elt-overlay").show();var e=this;r.ajax({type:t,url:e.grid.get("url_base"),data:e.grid.get_url_data(),error:function(){alert("Grid refresh failed")},success:function(t){var i=e.grid.get("embedded"),n=e.grid.get("insert"),r=e.$el.find("#advanced-search").is(":visible"),a=t;a.embedded=i,a.insert=n,a.advanced_search=r,e.init_grid(a),e.$el.find(".loading-elt-overlay").hide()},complete:function(){e.grid.set({operation:void 0,item_ids:void 0})}})}})}).call(e,i(0),i(2),i(0),i(1))},function(t,e,i){"use strict";(function(t){function i(e,i){i=i||window.location.search.substr(1);var n=new RegExp(e+"=([^&#$]+)","g"),r=i.match(n);if(r&&r.length)return r=t.map(r,function(t){return decodeURIComponent(t.substr(e.length+1).replace(/\+/g," "))}),1===r.length?r[0]:r}function n(t){if(!t)return{};var e={};return t.split("&").forEach(function(t){var i=t.split("=");e[i[0]]=decodeURI(i[1])}),e}Object.defineProperty(e,"__esModule",{value:!0}),e.default={get:i,parse:n}}).call(e,i(1))},,,,,,,,,,,,,,,,,function(t,e,i){"use strict";function n(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var i in t)Object.prototype.hasOwnProperty.call(t,i)&&(e[i]=t[i]);return 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de=/^(?:input|select|textarea|button)$/i,fe=/^(?:a|area)$/i;lt.fn.extend({prop:function(t,e){return St(this,lt.prop,t,e,arguments.length>1)},removeProp:function(t){return this.each(function(){delete this[lt.propFix[t]||t]})}}),lt.extend({prop:function(t,e,i){var n,r,a=t.nodeType;if(3!==a&&8!==a&&2!==a)return 1===a&&lt.isXMLDoc(t)||(e=lt.propFix[e]||e,r=lt.propHooks[e]),void 0!==i?r&&"set"in r&&void 0!==(n=r.set(t,i,e))?n:t[e]=i:r&&"get"in r&&null!==(n=r.get(t,e))?n:t[e]},propHooks:{tabIndex:{get:function(t){var e=lt.find.attr(t,"tabindex");return e?parseInt(e,10):de.test(t.nodeName)||fe.test(t.nodeName)&&t.href?0:-1}}},propFix:{for:"htmlFor",class:"className"}}),st.optSelected||(lt.propHooks.selected={get:function(t){var e=t.parentNode;return e&&e.parentNode&&e.parentNode.selectedIndex,null},set:function(t){var 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i,n,r=t.options,a=lt.makeArray(e),o=r.length;o--;)n=r[o],(n.selected=lt.inArray(lt.valHooks.option.get(n),a)>-1)&&(i=!0);return i||(t.selectedIndex=-1),a}}}}),lt.each(["radio","checkbox"],function(){lt.valHooks[this]={set:function(t,e){if(lt.isArray(e))return t.checked=lt.inArray(lt(t).val(),e)>-1}},st.checkOn||(lt.valHooks[this].get=function(t){return null===t.getAttribute("value")?"on":t.value})});var ve=/^(?:focusinfocus|focusoutblur)$/;lt.extend(lt.event,{trigger:function(t,e,n,r){var a,o,s,l,u,c,h,d=[n||Z],f=ot.call(t,"type")?t.type:t,p=ot.call(t,"namespace")?t.namespace.split("."):[];if(o=s=n=n||Z,3!==n.nodeType&&8!==n.nodeType&&!ve.test(f+lt.event.triggered)&&(f.indexOf(".")>-1&&(p=f.split("."),f=p.shift(),p.sort()),u=f.indexOf(":")<0&&"on"+f,t=t[lt.expando]?t:new lt.Event(f,"object"==typeof t&&t),t.isTrigger=r?2:3,t.namespace=p.join("."),t.rnamespace=t.namespace?new RegExp("(^|\\.)"+p.join("\\.(?:.*\\.|)")+"(\\.|$)"):null,t.result=void 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m=function(t,e,n,r){if(n){var a=t[e]=i.once(function(){r(e,a),n.apply(this,arguments)});a._callback=n}return t};c.trigger=function(t){if(!this._events)return this;for(var e=Math.max(0,arguments.length-1),i=Array(e),n=0;n<e;n++)i[n]=arguments[n+1];return d(v,this._events,t,void 0,i),this};var v=function(t,e,i,n){if(t){var r=t[e],a=t.all;r&&a&&(a=a.slice()),r&&_(r,n),a&&_(a,[e].concat(n))}return t},_=function(t,e){var i,n=-1,r=t.length,a=e[0],o=e[1],s=e[2];switch(e.length){case 0:for(;++n<r;)(i=t[n]).callback.call(i.ctx);return;case 1:for(;++n<r;)(i=t[n]).callback.call(i.ctx,a);return;case 2:for(;++n<r;)(i=t[n]).callback.call(i.ctx,a,o);return;case 3:for(;++n<r;)(i=t[n]).callback.call(i.ctx,a,o,s);return;default:for(;++n<r;)(i=t[n]).callback.apply(i.ctx,e);return}};c.bind=c.on,c.unbind=c.off,i.extend(e,c);var y=e.Model=function(t,e){var n=t||{};e||(e={}),this.cid=i.uniqueId(this.cidPrefix),this.attributes={},e.collection&&(this.collection=e.collection),e.parse&&(n=this.parse(n,e)||{});var r=i.result(this,"defaults");n=i.defaults(i.extend({},r,n),r),this.set(n,e),this.changed={},this.initialize.apply(this,arguments)};i.extend(y.prototype,c,{changed:null,validationError:null,idAttribute:"id",cidPrefix:"c",initialize:function(){},toJSON:function(t){return i.clone(this.attributes)},sync:function(){return e.sync.apply(this,arguments)},get:function(t){return this.attributes[t]},escape:function(t){return i.escape(this.get(t))},has:function(t){return null!=this.get(t)},matches:function(t){return!!i.iteratee(t,this)(this.attributes)},set:function(t,e,n){if(null==t)return this;var r;if("object"==typeof t?(r=t,n=e):(r={})[t]=e,n||(n={}),!this._validate(r,n))return!1;var a=n.unset,o=n.silent,s=[],l=this._changing;this._changing=!0,l||(this._previousAttributes=i.clone(this.attributes),this.changed={});var u=this.attributes,c=this.changed,h=this._previousAttributes;for(var d in r)e=r[d],i.isEqual(u[d],e)||s.push(d),i.isEqual(h[d],e)?delete c[d]:c[d]=e,a?delete u[d]:u[d]=e;if(this.idAttribute in r&&(this.id=this.get(this.idAttribute)),!o){s.length&&(this._pending=n);for(var f=0;f<s.length;f++)this.trigger("change:"+s[f],this,u[s[f]],n)}if(l)return this;if(!o)for(;this._pending;)n=this._pending,this._pending=!1,this.trigger("change",this,n);return this._pending=!1,this._changing=!1,this},unset:function(t,e){return this.set(t,void 0,i.extend({},e,{unset:!0}))},clear:function(t){var e={};for(var n in this.attributes)e[n]=void 0;return this.set(e,i.extend({},t,{unset:!0}))},hasChanged:function(t){return null==t?!i.isEmpty(this.changed):i.has(this.changed,t)},changedAttributes:function(t){if(!t)return!!this.hasChanged()&&i.clone(this.changed);var e=this._changing?this._previousAttributes:this.attributes,n={};for(var r in t){var a=t[r];i.isEqual(e[r],a)||(n[r]=a)}return!!i.size(n)&&n},previous:function(t){return null!=t&&this._previousAttributes?this._previousAttributes[t]:null},previousAttributes:function(){return i.clone(this._previousAttributes)},fetch:function(t){t=i.extend({parse:!0},t);var e=this,n=t.success;return t.success=function(i){var r=t.parse?e.parse(i,t):i;if(!e.set(r,t))return!1;n&&n.call(t.context,e,i,t),e.trigger("sync",e,i,t)},z(this,t),this.sync("read",this,t)},save:function(t,e,n){var r;null==t||"object"==typeof t?(r=t,n=e):(r={})[t]=e,n=i.extend({validate:!0,parse:!0},n);var a=n.wait;if(r&&!a){if(!this.set(r,n))return!1}else if(!this._validate(r,n))return!1;var o=this,s=n.success,l=this.attributes;n.success=function(t){o.attributes=l;var e=n.parse?o.parse(t,n):t;if(a&&(e=i.extend({},r,e)),e&&!o.set(e,n))return!1;s&&s.call(n.context,o,t,n),o.trigger("sync",o,t,n)},z(this,n),r&&a&&(this.attributes=i.extend({},l,r));var u=this.isNew()?"create":n.patch?"patch":"update";"patch"!==u||n.attrs||(n.attrs=r);var c=this.sync(u,this,n);return this.attributes=l,c},destroy:function(t){t=t?i.clone(t):{};var e=this,n=t.success,r=t.wait,a=function(){e.stopListening(),e.trigger("destroy",e,e.collection,t)};t.success=function(i){r&&a(),n&&n.call(t.context,e,i,t),e.isNew()||e.trigger("sync",e,i,t)};var o=!1;return this.isNew()?i.defer(t.success):(z(this,t),o=this.sync("delete",this,t)),r||a(),o},url:function(){var t=i.result(this,"urlRoot")||i.result(this.collection,"url")||L();if(this.isNew())return t;var e=this.get(this.idAttribute);return t.replace(/[^\/]$/,"$&/")+encodeURIComponent(e)},parse:function(t,e){return t},clone:function(){return new this.constructor(this.attributes)},isNew:function(){return!this.has(this.idAttribute)},isValid:function(t){return this._validate({},i.extend({},t,{validate:!0}))},_validate:function(t,e){if(!e.validate||!this.validate)return!0;t=i.extend({},this.attributes,t);var n=this.validationError=this.validate(t,e)||null;return!n||(this.trigger("invalid",this,n,i.extend(e,{validationError:n})),!1)}}),s(y,{keys:1,values:1,pairs:1,invert:1,pick:0,omit:0,chain:1,isEmpty:1},"attributes");var b=e.Collection=function(t,e){e||(e={}),e.model&&(this.model=e.model),void 0!==e.comparator&&(this.comparator=e.comparator),this._reset(),this.initialize.apply(this,arguments),t&&this.reset(t,i.extend({silent:!0},e))},w={add:!0,remove:!0,merge:!0},x={add:!0,remove:!1},C=function(t,e,i){i=Math.min(Math.max(i,0),t.length);var n,r=Array(t.length-i),a=e.length;for(n=0;n<r.length;n++)r[n]=t[n+i];for(n=0;n<a;n++)t[n+i]=e[n];for(n=0;n<r.length;n++)t[n+a+i]=r[n]};i.extend(b.prototype,c,{model:y,initialize:function(){},toJSON:function(t){return this.map(function(e){return e.toJSON(t)})},sync:function(){return e.sync.apply(this,arguments)},add:function(t,e){return this.set(t,i.extend({merge:!1},e,x))},remove:function(t,e){e=i.extend({},e);var n=!i.isArray(t);t=n?[t]:t.slice();var r=this._removeModels(t,e);return!e.silent&&r.length&&(e.changes={added:[],merged:[],removed:r},this.trigger("update",this,e)),n?r[0]:r},set:function(t,e){if(null!=t){e=i.extend({},w,e),e.parse&&!this._isModel(t)&&(t=this.parse(t,e)||[]);var n=!i.isArray(t);t=n?[t]:t.slice();var r=e.at;null!=r&&(r=+r),r>this.length&&(r=this.length),r<0&&(r+=this.length+1);var a,o,s=[],l=[],u=[],c=[],h={},d=e.add,f=e.merge,p=e.remove,g=!1,m=this.comparator&&null==r&&!1!==e.sort,v=i.isString(this.comparator)?this.comparator:null;for(o=0;o<t.length;o++){a=t[o];var _=this.get(a);if(_){if(f&&a!==_){var y=this._isModel(a)?a.attributes:a;e.parse&&(y=_.parse(y,e)),_.set(y,e),u.push(_),m&&!g&&(g=_.hasChanged(v))}h[_.cid]||(h[_.cid]=!0,s.push(_)),t[o]=_}else d&&(a=t[o]=this._prepareModel(a,e))&&(l.push(a),this._addReference(a,e),h[a.cid]=!0,s.push(a))}if(p){for(o=0;o<this.length;o++)a=this.models[o],h[a.cid]||c.push(a);c.length&&this._removeModels(c,e)}var b=!1,x=!m&&d&&p;if(s.length&&x?(b=this.length!==s.length||i.some(this.models,function(t,e){return t!==s[e]}),this.models.length=0,C(this.models,s,0),this.length=this.models.length):l.length&&(m&&(g=!0),C(this.models,l,null==r?this.length:r),this.length=this.models.length),g&&this.sort({silent:!0}),!e.silent){for(o=0;o<l.length;o++)null!=r&&(e.index=r+o),a=l[o],a.trigger("add",a,this,e);(g||b)&&this.trigger("sort",this,e),(l.length||c.length||u.length)&&(e.changes={added:l,removed:c,merged:u},this.trigger("update",this,e))}return n?t[0]:t}},reset:function(t,e){e=e?i.clone(e):{};for(var n=0;n<this.models.length;n++)this._removeReference(this.models[n],e);return e.previousModels=this.models,this._reset(),t=this.add(t,i.extend({silent:!0},e)),e.silent||this.trigger("reset",this,e),t},push:function(t,e){return this.add(t,i.extend({at:this.length},e))},pop:function(t){var e=this.at(this.length-1);return this.remove(e,t)},unshift:function(t,e){return this.add(t,i.extend({at:0},e))},shift:function(t){var e=this.at(0);return this.remove(e,t)},slice:function(){return a.apply(this.models,arguments)},get:function(t){if(null!=t)return this._byId[t]||this._byId[this.modelId(t.attributes||t)]||t.cid&&this._byId[t.cid]},has:function(t){return null!=this.get(t)},at:function(t){return t<0&&(t+=this.length),this.models[t]},where:function(t,e){return this[e?"find":"filter"](t)},findWhere:function(t){return this.where(t,!0)},sort:function(t){var e=this.comparator;if(!e)throw new Error("Cannot sort a set without a comparator");t||(t={});var n=e.length;return i.isFunction(e)&&(e=i.bind(e,this)),1===n||i.isString(e)?this.models=this.sortBy(e):this.models.sort(e),t.silent||this.trigger("sort",this,t),this},pluck:function(t){return this.map(t+"")},fetch:function(t){t=i.extend({parse:!0},t);var e=t.success,n=this;return t.success=function(i){var r=t.reset?"reset":"set";n[r](i,t),e&&e.call(t.context,n,i,t),n.trigger("sync",n,i,t)},z(this,t),this.sync("read",this,t)},create:function(t,e){e=e?i.clone(e):{};var n=e.wait;if(!(t=this._prepareModel(t,e)))return!1;n||this.add(t,e);var r=this,a=e.success;return e.success=function(t,e,i){n&&r.add(t,i),a&&a.call(i.context,t,e,i)},t.save(null,e),t},parse:function(t,e){return t},clone:function(){return new this.constructor(this.models,{model:this.model,comparator:this.comparator})},modelId:function(t){return t[this.model.prototype.idAttribute||"id"]},_reset:function(){this.length=0,this.models=[],this._byId={}},_prepareModel:function(t,e){if(this._isModel(t))return t.collection||(t.collection=this),t;e=e?i.clone(e):{},e.collection=this;var n=new this.model(t,e);return n.validationError?(this.trigger("invalid",this,n.validationError,e),!1):n},_removeModels:function(t,e){for(var i=[],n=0;n<t.length;n++){var r=this.get(t[n]);if(r){var a=this.indexOf(r);this.models.splice(a,1),this.length--,delete this._byId[r.cid];var o=this.modelId(r.attributes);null!=o&&delete this._byId[o],e.silent||(e.index=a,r.trigger("remove",r,this,e)),i.push(r),this._removeReference(r,e)}}return i},_isModel:function(t){return t instanceof y},_addReference:function(t,e){this._byId[t.cid]=t;var i=this.modelId(t.attributes);null!=i&&(this._byId[i]=t),t.on("all",this._onModelEvent,this)},_removeReference:function(t,e){delete this._byId[t.cid];var i=this.modelId(t.attributes);null!=i&&delete this._byId[i],this===t.collection&&delete t.collection,t.off("all",this._onModelEvent,this)},_onModelEvent:function(t,e,i,n){if(e){if(("add"===t||"remove"===t)&&i!==this)return;if("destroy"===t&&this.remove(e,n),"change"===t){var r=this.modelId(e.previousAttributes()),a=this.modelId(e.attributes);r!==a&&(null!=r&&delete this._byId[r],null!=a&&(this._byId[a]=e))}}this.trigger.apply(this,arguments)}}),s(b,{forEach:3,each:3,map:3,collect:3,reduce:0,foldl:0,inject:0,reduceRight:0,foldr:0,find:3,detect:3,filter:3,select:3,reject:3,every:3,all:3,some:3,any:3,include:3,includes:3,contains:3,invoke:0,max:3,min:3,toArray:1,size:1,first:3,head:3,take:3,initial:3,rest:3,tail:3,drop:3,last:3,without:0,difference:0,indexOf:3,shuffle:1,lastIndexOf:3,isEmpty:1,chain:1,sample:3,partition:3,groupBy:3,countBy:3,sortBy:3,indexBy:3,findIndex:3,findLastIndex:3},"models");var k=e.View=function(t){this.cid=i.uniqueId("view"),i.extend(this,i.pick(t,T)),this._ensureElement(),this.initialize.apply(this,arguments)},S=/^(\S+)\s*(.*)$/,T=["model","collection","el","id","attributes","className","tagName","events"];i.extend(k.prototype,c,{tagName:"div",$:function(t){return this.$el.find(t)},initialize:function(){},render:function(){return this},remove:function(){return this._removeElement(),this.stopListening(),this},_removeElement:function(){this.$el.remove()},setElement:function(t){return this.undelegateEvents(),this._setElement(t),this.delegateEvents(),this},_setElement:function(t){this.$el=t instanceof e.$?t:e.$(t),this.el=this.$el[0]},delegateEvents:function(t){if(t||(t=i.result(this,"events")),!t)return this;this.undelegateEvents();for(var e in t){var n=t[e];if(i.isFunction(n)||(n=this[n]),n){var r=e.match(S);this.delegate(r[1],r[2],i.bind(n,this))}}return this},delegate:function(t,e,i){return this.$el.on(t+".delegateEvents"+this.cid,e,i),this},undelegateEvents:function(){return this.$el&&this.$el.off(".delegateEvents"+this.cid),this},undelegate:function(t,e,i){return this.$el.off(t+".delegateEvents"+this.cid,e,i),this},_createElement:function(t){return document.createElement(t)},_ensureElement:function(){if(this.el)this.setElement(i.result(this,"el"));else{var t=i.extend({},i.result(this,"attributes"));this.id&&(t.id=i.result(this,"id")),this.className&&(t.class=i.result(this,"className")),this.setElement(this._createElement(i.result(this,"tagName"))),this._setAttributes(t)}},_setAttributes:function(t){this.$el.attr(t)}}),e.sync=function(t,n,r){var a=A[t];i.defaults(r||(r={}),{emulateHTTP:e.emulateHTTP,emulateJSON:e.emulateJSON});var o={type:a,dataType:"json"};if(r.url||(o.url=i.result(n,"url")||L()),null!=r.data||!n||"create"!==t&&"update"!==t&&"patch"!==t||(o.contentType="application/json",o.data=JSON.stringify(r.attrs||n.toJSON(r))),r.emulateJSON&&(o.contentType="application/x-www-form-urlencoded",o.data=o.data?{model:o.data}:{}),r.emulateHTTP&&("PUT"===a||"DELETE"===a||"PATCH"===a)){o.type="POST",r.emulateJSON&&(o.data._method=a);var s=r.beforeSend;r.beforeSend=function(t){if(t.setRequestHeader("X-HTTP-Method-Override",a),s)return s.apply(this,arguments)}}"GET"===o.type||r.emulateJSON||(o.processData=!1);var l=r.error;r.error=function(t,e,i){r.textStatus=e,r.errorThrown=i,l&&l.call(r.context,t,e,i)};var u=r.xhr=e.ajax(i.extend(o,r));return n.trigger("request",n,u,r),u};var A={create:"POST",update:"PUT",patch:"PATCH",delete:"DELETE",read:"GET"};e.ajax=function(){return e.$.ajax.apply(e.$,arguments)};var M=e.Router=function(t){t||(t={}),t.routes&&(this.routes=t.routes),this._bindRoutes(),this.initialize.apply(this,arguments)},E=/\((.*?)\)/g,O=/(\(\?)?:\w+/g,$=/\*\w+/g,D=/[\-{}\[\]+?.,\\\^$|#\s]/g;i.extend(M.prototype,c,{initialize:function(){},route:function(t,n,r){i.isRegExp(t)||(t=this._routeToRegExp(t)),i.isFunction(n)&&(r=n,n=""),r||(r=this[n]);var a=this;return e.history.route(t,function(i){var o=a._extractParameters(t,i);!1!==a.execute(r,o,n)&&(a.trigger.apply(a,["route:"+n].concat(o)),a.trigger("route",n,o),e.history.trigger("route",a,n,o))}),this},execute:function(t,e,i){t&&t.apply(this,e)},navigate:function(t,i){return e.history.navigate(t,i),this},_bindRoutes:function(){if(this.routes){this.routes=i.result(this,"routes");for(var t,e=i.keys(this.routes);null!=(t=e.pop());)this.route(t,this.routes[t])}},_routeToRegExp:function(t){return t=t.replace(D,"\\$&").replace(E,"(?:$1)?").replace(O,function(t,e){return e?t:"([^/?]+)"}).replace($,"([^?]*?)"),new RegExp("^"+t+"(?:\\?([\\s\\S]*))?$")},_extractParameters:function(t,e){var n=t.exec(e).slice(1);return i.map(n,function(t,e){return e===n.length-1?t||null:t?decodeURIComponent(t):null})}});var j=e.History=function(){this.handlers=[],this.checkUrl=i.bind(this.checkUrl,this),"undefined"!=typeof window&&(this.location=window.location,this.history=window.history)},P=/^[#\/]|\s+$/g,R=/^\/+|\/+$/g,I=/#.*$/;j.started=!1,i.extend(j.prototype,c,{interval:50,atRoot:function(){return this.location.pathname.replace(/[^\/]$/,"$&/")===this.root&&!this.getSearch()},matchRoot:function(){return 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i=r(t.target).parent(),n=i.children().eq(this.col.chrom).html(),a=i.children().eq(this.col.start).html(),o=this.col.end?i.children().eq(this.col.end).html():a;if(!n.match("^#")&&""!==n&&function(t){return!isNaN(parseFloat(t))&&isFinite(t)}(a)){var l={dataset_id:this.dataset_id,gene_region:n+":"+a+"-"+o},u=i.offset(),c=u.left-10,h=u.top-r(window).scrollTop()+3;r("#btn_viz").css({position:"fixed",top:h+"px",left:c+"px"}),r("#btn_viz").off("click"),r("#btn_viz").click(function(){e.frame.add({title:(0,s.default)("Trackster"),url:e.url_viz+"/trackster?"+r.param(l)})}),r("#btn_viz").show()}else r("#btn_viz").hide()}},hide:function(){this.$("#btn_viz").hide()}}),_=function(t){t.model||(t.model=new d(t.dataset_config));var e=t.parent_elt,i=t.embedded;delete t.embedded,delete t.parent_elt,delete t.dataset_config;var n=i?new m(t):new g(t);return n.render(),e&&(e.append(n.$el),n.expand_to_container()),n};e.default={Dataset:h,TabularDataset:d,DatasetCollection:f,TabularDatasetChunkedView:p,createTabularDatasetChunkedView:_}}).call(e,i(2),i(1),i(0))},function(t,e,i){"use strict";(function(t,n){function r(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var a=i(3),o=r(a),s=i(1),l=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var i in t)Object.prototype.hasOwnProperty.call(t,i)&&(e[i]=t[i]);return e.default=t,e}(s),u=i(23),c=r(u),h=i(45),d=r(h),f=i(46),p=r(f),g=i(25),m=r(g),v=i(78),_=r(v),y=i(6),b=(r(y),{toJSON:function(){var t=this,e={};return l.each(t.constructor.to_json_keys,function(i){var n=t.get(i);i in t.constructor.to_json_mappers&&(n=t.constructor.to_json_mappers[i](n,t)),e[i]=n}),e}}),w=function(e,i){var n=new m.default({url_base:Galaxy.root+"visualization/list_history_datasets",filters:e,embedded:!0}),r=new m.default({url_base:Galaxy.root+"visualization/list_library_datasets",embedded:!0}),a=new _.default.View;a.add({id:"histories",title:(0,o.default)("Histories"),$el:t("<div/>").append(n.$el)}),a.add({id:"libraries",title:(0,o.default)("Libraries"),$el:t("<div/>").append(r.$el)}),Galaxy.modal.show({title:(0,o.default)("Select datasets for new tracks"),body:a.$el,closing_events:!0,buttons:{Cancel:function(){Galaxy.modal.hide()},Add:function(){var e=[];a.$("input.grid-row-select-checkbox[name=id]:checked").each(function(){window.console.log(t(this).val()),e[e.length]=t.ajax({url:Galaxy.root+"api/datasets/"+t(this).val(),dataType:"json",data:{data_type:"track_config",hda_ldda:"histories"==a.current()?"hda":"ldda"}})}),t.when.apply(t,e).then(function(){var e=arguments[0]instanceof Array?t.map(arguments,function(t){return t[0]}):[arguments[0]];i(e)}),Galaxy.modal.hide()}}})},x=function(t){this.default_font=void 0!==t?t:"9px Monaco, Lucida Console, 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e=this.attributes.obj_cache,i=this.attributes.key_ary,n=t.toString(),r=l.indexOf(i,function(t){return t.toString()===n});return-1!==r&&(e[n].stale?(i.splice(r,1),delete e[n]):this.move_key_to_end(t,r)),e[n]},set_elt:function(t,e){var i=this.attributes.obj_cache,n=this.attributes.key_ary,r=t.toString(),a=this.attributes.num_elements;if(!i[r]){if(n.length>=a){delete i[n.shift().toString()]}n.push(t)}return i[r]=e,e},move_key_to_end:function(t,e){this.attributes.key_ary.splice(e,1),this.attributes.key_ary.push(t)},clear:function(){this.attributes.obj_cache={},this.attributes.key_ary=[]},size:function(){return this.attributes.key_ary.length},most_recently_added:function(){return 0===this.size()?null:this.attributes.key_ary[this.attributes.key_ary.length-1]}}),k=C.extend({defaults:l.extend({},C.prototype.defaults,{dataset:null,genome:null,init_data:null,min_region_size:200,filters_manager:null,data_type:"data",data_mode_compatible:function(t,e){return!0},can_subset:function(t){return!1}}),initialize:function(t){C.prototype.initialize.call(this);var e=this.get("init_data");e&&this.add_data(e)},add_data:function(t){this.get("num_elements")<t.length&&this.set("num_elements",t.length);var e=this;l.each(t,function(t){e.set_data(t.region,t)})},data_is_ready:function(){var e=this.get("dataset"),i=t.Deferred(),n="raw_data"===this.get("data_type")?"state":"data"===this.get("data_type")?"converted_datasets_state":"error",r=new d.default.ServerStateDeferred({ajax_settings:{url:this.get("dataset").url(),data:{hda_ldda:e.get("hda_ldda"),data_type:n},dataType:"json"},interval:5e3,success_fn:function(t){return"pending"!==t}});return t.when(r.go()).then(function(t){i.resolve("ok"===t||"data"===t)}),i},search_features:function(e){var i=this.get("dataset"),n={query:e,hda_ldda:i.get("hda_ldda"),data_type:"features"};return t.getJSON(i.url(),n)},load_data:function(e,i,n,r){var a=this.get("dataset"),o={data_type:this.get("data_type"),chrom:e.get("chrom"),low:e.get("start"),high:e.get("end"),mode:i,resolution:n,hda_ldda:a.get("hda_ldda")};t.extend(o,r);var s=this.get("filters_manager");if(s){for(var l=[],u=s.filters,c=0;c<u.length;c++)l.push(u[c].name);o.filter_cols=JSON.stringify(l)}var h=this,d=t.getJSON(a.url(),o,function(t){t.region=e,h.set_data(e,t)});return this.set_data(e,d),d},get_data:function(t,e,i,n){var r=this.get_elt(t);if(r&&(d.default.is_deferred(r)||this.get("data_mode_compatible")(r,e)))return r;for(var a,o,s=this.get("key_ary"),l=this.get("obj_cache"),u=0;u<s.length;u++)if(a=s[u],a.contains(t)&&(o=!0,r=l[a.toString()],d.default.is_deferred(r)||this.get("data_mode_compatible")(r,e)&&this.get("can_subset")(r))){if(this.move_key_to_end(a,u),!d.default.is_deferred(r)){var c=this.subset_entry(r,t);this.set_data(t,c),r=c}return r}if(!o&&t.length()<this.attributes.min_region_size){t=t.copy();var h=this.most_recently_added();!h||t.get("start")>h.get("start")?t.set("end",t.get("start")+this.attributes.min_region_size):t.set("start",t.get("end")-this.attributes.min_region_size),t.set("genome",this.attributes.genome),t.trim()}return this.load_data(t,e,i,n)},set_data:function(t,e){this.set_elt(t,e)},DEEP_DATA_REQ:"deep",BROAD_DATA_REQ:"breadth",get_more_data:function(e,i,n,r,a){var o=this._mark_stale(e);if(!o||!this.get("data_mode_compatible")(o,i))return void console.log("ERROR: problem with getting more data: current data is not compatible");var s=e.get("start");a===this.DEEP_DATA_REQ?t.extend(r,{start_val:o.data.length+1}):a===this.BROAD_DATA_REQ&&(s=(o.max_high?o.max_high:o.data[o.data.length-1][2])+1);var l=e.copy().set("start",s),u=this,c=this.load_data(l,i,n,r),h=t.Deferred();return this.set_data(e,h),t.when(c).then(function(t){t.data&&(t.data=o.data.concat(t.data),t.max_low&&(t.max_low=o.max_low),t.message&&(t.message=t.message.replace(/[0-9]+/,t.data.length))),u.set_data(e,t),h.resolve(t)}),h},can_get_more_detailed_data:function(t){var e=this.get_elt(t);return"bigwig"===e.dataset_type&&e.data.length<8e3},get_more_detailed_data:function(t,e,i,n,r){var a=this._mark_stale(t);return a?(r||(r={}),"bigwig"===a.dataset_type&&(r.num_samples=1e3*n),this.load_data(t,e,i,r)):void console.log("ERROR getting more detailed data: no current data")},_mark_stale:function(t){var e=this.get_elt(t);return e||console.log("ERROR: no data to mark as stale: ",this.get("dataset"),t.toString()),e.stale=!0,e},get_genome_wide_data:function(e){var i=this,n=!0,r=l.map(e.get("chroms_info").chrom_info,function(t){var e=i.get_elt(new A({chrom:t.chrom,start:0,end:t.len}));return e||(n=!1),e});if(n)return r;var a=t.Deferred();return t.getJSON(this.get("dataset").url(),{data_type:"genome_data"},function(t){i.add_data(t.data),a.resolve(t.data)}),a},subset_entry:function(t,e){var i={bigwig:function(t,e){return l.filter(t,function(t){return t[0]>=e.get("start")&&t[0]<=e.get("end")})},refseq:function(e,i){var n=i.get("start")-t.region.get("start");return t.data.slice(n,n+i.length())}},n=t.data;return!t.region.same(e)&&t.dataset_type in i&&(n=i[t.dataset_type](t.data,e)),{region:e,data:n,dataset_type:t.dataset_type}}}),S=k.extend({initialize:function(t){var e=new n.Model;e.urlRoot=t.data_url,this.set("dataset",e)},load_data:function(t,e,i,n){return t.length()<=1e5?k.prototype.load_data.call(this,t,e,i,n):{data:null,region:t}}}),T=n.Model.extend({defaults:{name:null,key:null,chroms_info:null},initialize:function(t){this.id=t.dbkey},get_chroms_info:function(){return this.attributes.chroms_info.chrom_info},get_chrom_region:function(t){var e=l.find(this.get_chroms_info(),function(e){return e.chrom===t});return new A({chrom:e.chrom,end:e.len})},get_chrom_len:function(t){return l.find(this.get_chroms_info(),function(e){return e.chrom===t}).len}}),A=n.Model.extend({defaults:{chrom:null,start:0,end:0,str_val:null,genome:null},same:function(t){return this.attributes.chrom===t.get("chrom")&&this.attributes.start===t.get("start")&&this.attributes.end===t.get("end")},initialize:function(t){if(t.from_str){var e=t.from_str.split(":"),i=e[0],n=e[1].split("-");this.set({chrom:i,start:parseInt(n[0],10),end:parseInt(n[1],10)})}this.attributes.str_val=this.get("chrom")+":"+this.get("start")+"-"+this.get("end"),this.on("change",function(){this.attributes.str_val=this.get("chrom")+":"+this.get("start")+"-"+this.get("end")},this)},copy:function(){return new A({chrom:this.get("chrom"),start:this.get("start"),end:this.get("end")})},length:function(){return this.get("end")-this.get("start")},toString:function(){return this.attributes.str_val},toJSON:function(){return{chrom:this.get("chrom"),start:this.get("start"),end:this.get("end")}},compute_overlap:function(t){var e=this.get("chrom"),i=t.get("chrom"),n=this.get("start"),r=t.get("start"),a=this.get("end"),o=t.get("end");return e&&i&&e!==i?A.overlap_results.DIF_CHROMS:n<r?a<r?A.overlap_results.BEFORE:a<o?A.overlap_results.OVERLAP_START:A.overlap_results.CONTAINS:n>r?n>o?A.overlap_results.AFTER:a<=o?A.overlap_results.CONTAINED_BY:A.overlap_results.OVERLAP_END:a>=o?A.overlap_results.CONTAINS:A.overlap_results.CONTAINED_BY},trim:function(t){if(this.attributes.start<0&&(this.attributes.start=0),this.attributes.genome){var e=this.attributes.genome.get_chrom_len(this.attributes.chrom);this.attributes.end>e&&(this.attributes.end=e-1)}return this},contains:function(t){return this.compute_overlap(t)===A.overlap_results.CONTAINS},overlaps:function(t){return 0===l.intersection([this.compute_overlap(t)],[A.overlap_results.DIF_CHROMS,A.overlap_results.BEFORE,A.overlap_results.AFTER]).length}},{overlap_results:{DIF_CHROMS:1e3,BEFORE:1001,CONTAINS:1002,OVERLAP_START:1003,OVERLAP_END:1004,CONTAINED_BY:1005,AFTER:1006}}),M=n.Collection.extend({model:A}),E=n.Model.extend({defaults:{region:null,note:""},initialize:function(t){this.set("region",new A(t.region))}}),O=n.Collection.extend({model:E}),$=n.Model.extend(b).extend({defaults:{mode:"Auto"},initialize:function(t){this.set("dataset",new c.default.Dataset(t.dataset));var e=[{key:"name",default_value:this.get("dataset").get("name")},{key:"color"},{key:"min_value",label:"Min Value",type:"float",default_value:0},{key:"max_value",label:"Max Value",type:"float",default_value:1}];this.set("config",p.default.ConfigSettingCollection.from_models_and_saved_values(e,t.prefs));var i=this.get("preloaded_data");i=i?i.data:[],this.set("data_manager",new k({dataset:this.get("dataset"),init_data:i}))}},{to_json_keys:["track_type","dataset","prefs","mode","filters","tool_state"],to_json_mappers:{prefs:function(t,e){return 0===l.size(t)&&(t={name:e.get("config").get("name").get("value"),color:e.get("config").get("color").get("value")}),t},dataset:function(t){return{id:t.id,hda_ldda:t.get("hda_ldda")}}}}),D=n.Collection.extend({model:$}),j=n.Model.extend({defaults:{title:"",type:""},urlRoot:Galaxy.root+"api/visualizations",save:function(){return t.ajax({url:this.url(),type:"POST",dataType:"json",data:{vis_json:JSON.stringify(this)}})}}),P=j.extend(b).extend({defaults:l.extend({},j.prototype.defaults,{dbkey:"",drawables:null,bookmarks:null,viewport:null}),initialize:function(t){this.set("drawables",new D(t.tracks));var e=[];this.set("config",p.default.ConfigSettingCollection.from_models_and_saved_values(e,t.prefs)),this.unset("tracks"),this.get("drawables").each(function(t){t.unset("preloaded_data")})},add_tracks:function(t){this.get("drawables").add(t)}},{to_json_keys:["view","viewport","bookmarks"],to_json_mappers:{view:function(t,e){return{obj_type:"View",prefs:{name:e.get("title"),content_visible:!0},drawables:e.get("drawables")}}}}),R=n.Router.extend({initialize:function(t){this.view=t.view,this.route(/([\w]+)$/,"change_location"),this.route(/([\w\+]+\:[\d,]+-[\d,]+)$/,"change_location");var e=this;e.view.on("navigate",function(t){e.navigate(t)})},change_location:function(t){this.view.go_to(t)}});e.default={BackboneTrack:$,BrowserBookmark:E,BrowserBookmarkCollection:O,Cache:C,CanvasManager:x,Genome:T,GenomeDataManager:k,GenomeRegion:A,GenomeRegionCollection:M,GenomeVisualization:P,GenomeReferenceDataManager:S,TrackBrowserRouter:R,Visualization:j,select_datasets:w}}).call(e,i(0),i(2))},function(t,e,i){"use strict";(function(t,n,r,a){function o(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var s=i(5),l=o(s),u=i(157),c=o(u),h=i(158),d=o(h),f=i(47),p=o(f);t.ajaxSettings.traditional=!0,e.default=n.View.extend({grid:null,initialize:function(t){this.grid=new c.default,this.title=t.title;var e=this;if(window.add_tag_to_grid_filter=function(t,i){var n=t+(void 0!==i&&""!==i?":"+i:"");r("#advanced-search").is(":visible")||(r("#standard-search").slideToggle("fast"),r("#advanced-search").slideToggle("fast")),e.add_filter_condition("tags",n)},this.setElement("<div/>"),t.url_base&&!t.items){var i=t.url_data||{};a.each(t.filters,function(t,e){i["f-"+e]=t}),r.ajax({url:t.url_base+"?"+r.param(i),success:function(i){i.embedded=t.embedded,i.filters=t.filters||{},e.init_grid(i)}})}else this.init_grid(t);t.use_panels&&r("#center").css({padding:"10px",overflow:"auto"})},handle_refresh:function(t){t&&r.inArray("history",t)>-1&&window.top.Galaxy&&window.top.Galaxy.currHistoryPanel&&window.top.Galaxy.currHistoryPanel.loadCurrentHistory()},init_grid:function(t){this.grid.set(t);var e=this.grid.attributes;this.allow_title_display&&e.title&&l.default.setWindowTitle(e.title),this.handle_refresh(e.refresh_frames);var i=this.grid.get("url_base");if(i=i.replace(/^.*\/\/[^\/]+/,""),this.grid.set("url_base",i),this.$el.html(d.default.grid(e)),this.$el.find("#grid-table-header").html(d.default.header(e)),this.$el.find("#grid-table-body").html(d.default.body(e)),this.$el.find("#grid-table-footer").html(d.default.footer(e)),e.message){this.$el.find("#grid-message").html(d.default.message(e));var n=this;e.use_hide_message&&setTimeout(function(){n.$el.find("#grid-message").html("")},5e3)}this.init_grid_elements(),this.init_grid_controls(),window.init_refresh_on_change&&window.init_refresh_on_change()},init_grid_controls:function(){var t=this;this.$el.find(".operation-button").each(function(){r(this).off(),r(this).click(function(){return t.submit_operation(this),!1})}),this.$el.find("input[type=text]").each(function(){r(this).off(),r(this).click(function(){r(this).select()}).keyup(function(){r(this).css("font-style","normal")})}),this.$el.find(".sort-link").each(function(){r(this).off(),r(this).click(function(){return t.set_sort_condition(r(this).attr("sort_key")),!1})}),this.$el.find(".text-filter-form").each(function(){r(this).off(),r(this).submit(function(){var e=r(this).attr("column_key"),i=r("#input-"+e+"-filter"),n=i.val();return i.val(""),t.add_filter_condition(e,n),!1})}),this.$el.find(".text-filter-val > a").each(function(){r(this).off(),r(this).click(function(){return r(this).parent().remove(),t.remove_filter_condition(r(this).attr("filter_key"),r(this).attr("filter_val")),!1})}),this.$el.find(".categorical-filter > a").each(function(){r(this).off(),r(this).click(function(){return 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t=this,e=this.model.attributes;this.$el.removeClass().addClass("ui-button-default").addClass(e.disabled&&"disabled").attr("id",e.id).attr("disabled",e.disabled).off("click").on("click",function(){n(".tooltip").hide(),e.onclick&&!t.disabled&&e.onclick()}).tooltip({title:e.tooltip,placement:"bottom"}),this.$progress.addClass("progress").css("display",-1!==e.percentage?"block":"none"),this.$progress_bar.addClass("progress-bar").css({width:e.percentage+"%"}),this.$icon.removeClass().addClass("icon fa"),this.$title.removeClass().addClass("title"),e.wait?(this.$el.addClass(e.wait_cls).prop("disabled",!0),this.$icon.addClass("fa-spinner fa-spin 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t=this.model.attributes;this.$el.removeClass().addClass(t.cls).attr({id:t.id,href:t.href||"javascript:void(0)",title:t.title,target:t.target||"_top",disabled:t.disabled}).tooltip({placement:"bottom"}).off("click").on("click",function(){t.onclick&&!t.disabled&&t.onclick()}),this.$icon.removeClass().addClass(t.icon)}}),l=t.View.extend({initialize:function(e){this.model=e&&e.model||new t.Model({id:a.default.uid(),title:"Select/Unselect all",icons:["fa-square-o","fa-minus-square-o","fa-check-square-o"],value:0,onchange:function(){}}).set(e),this.setElement(n("<div/>").append(this.$icon=n("<span/>")).append(this.$title=n("<span/>"))),this.listenTo(this.model,"change",this.render,this),this.render()},render:function(t){var e=this,t=this.model.attributes;this.$el.addClass("ui-button-check").off("click").on("click",function(){e.model.set("value",0===e.model.get("value")&&2||0),t.onclick&&t.onclick()}),this.$title.html(t.title),this.$icon.removeClass().addClass("icon fa ui-margin-right").addClass(t.icons[t.value])},value:function(t,e){return void 0!==t&&(e&&0!==t&&(t=t!==e&&1||2),this.model.set("value",t),this.model.get("onchange")(this.model.get("value"))),this.model.get("value")}}),u=o.extend({initialize:function(e){this.model=e&&e.model||new t.Model({id:a.default.uid(),title:"",icon:"",cls:"ui-button-icon",disabled:!1}).set(e),this.setElement(n("<div/>").append(this.$button=n("<div/>").append(this.$icon=n("<i/>")).append(this.$title=n("<span/>")))),this.listenTo(this.model,"change",this.render,this),this.render()},render:function(t){var t=this.model.attributes;this.$el.removeClass().addClass(t.cls).addClass(t.disabled&&"disabled").attr("disabled",t.disabled).attr("id",t.id).off("click").on("click",function(){n(".tooltip").hide(),!t.disabled&&t.onclick&&t.onclick()}),this.$button.addClass("button").tooltip({title:t.tooltip,placement:"bottom"}),this.$icon.removeClass().addClass("icon fa").addClass(t.icon),this.$title.addClass("title").html(t.title),t.icon&&t.title&&this.$icon.addClass("ui-margin-right")}}),c=o.extend({$menu:null,initialize:function(e){this.model=e&&e.model||new t.Model({id:"",title:"",pull:"right",icon:null,onclick:null,cls:"ui-button-icon ui-button-menu",tooltip:"",target:"",href:"",onunload:null,visible:!0,tag:""}).set(e),this.collection=new t.Collection,this.setElement(n("<div/>").append(this.$root=n("<div/>").append(this.$icon=n("<i/>")).append(this.$title=n("<span/>")))),this.listenTo(this.model,"change",this.render,this),this.listenTo(this.collection,"change add remove reset",this.render,this),this.render()},render:function(){var t=this,e=this.model.attributes;this.$el.removeClass().addClass("dropdown").addClass(e.cls).attr("id",e.id).css({display:e.visible&&this.collection.where({visible:!0}).length>0?"block":"none"}),this.$root.addClass("root button dropdown-toggle").attr("data-toggle","dropdown").tooltip({title:e.tooltip,placement:"bottom"}).off("click").on("click",function(t){n(".tooltip").hide(),t.preventDefault(),e.onclick&&e.onclick()}),this.$icon.removeClass().addClass("icon fa").addClass(e.icon),this.$title.removeClass().addClass("title").html(e.title),e.icon&&e.title&&this.$icon.addClass("ui-margin-right"),this.$menu&&this.$menu.remove(),this.collection.length>0&&(this.$menu=n("<ul/>").addClass("menu dropdown-menu").addClass("pull-"+t.model.get("pull")).attr("role","menu"),this.$el.append(this.$menu)),this.collection.each(function(e){var i=e.attributes;if(i.visible){var r=n("<a/>").addClass("dropdown-item").attr({href:i.href,target:i.target}).append(n("<i/>").addClass("fa").addClass(i.icon).css("display",i.icon?"inline-block":"none")).append(i.title).on("click",function(t){i.onclick&&(t.preventDefault(),i.onclick())});t.$menu.append(n("<li/>").append(r)),i.divider&&t.$menu.append(n("<li/>").addClass("divider"))}})},addMenu:function(t){this.collection.add(a.default.merge(t,{title:"",target:"",href:"",onclick:null,divider:!1,visible:!0,icon:null,cls:"button-menu btn-group"}))}});e.default={ButtonDefault:o,ButtonLink:s,ButtonIcon:u,ButtonCheck:l,ButtonMenu:c}}).call(e,i(2),i(0))},function(t,e,i){"use strict";(function(t,n){function r(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var a=i(1),o=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var i in t)Object.prototype.hasOwnProperty.call(t,i)&&(e[i]=t[i]);return e.default=t,e}(a),s=i(45),l=r(s),u=i(22),c=r(u),h=i(118),d=(r(h),{hidden:!1,show:function(){this.set("hidden",!1)},hide:function(){this.set("hidden",!0)},toggle:function(){this.set("hidden",!this.get("hidden"))},is_visible:function(){return!this.attributes.hidden}}),f=t.Model.extend({defaults:{name:null,label:null,type:null,value:null,html:null,num_samples:5},initialize:function(t){this.attributes.html=unescape(this.attributes.html)},copy:function(){return new f(this.toJSON())},set_value:function(t){this.set("value",t||"")}}),p=t.Collection.extend({model:f}),g=f.extend({}),m=f.extend({set_value:function(t){this.set("value",parseInt(t,10))},get_samples:function(){return d3.scale.linear().domain([this.get("min"),this.get("max")]).ticks(this.get("num_samples"))}}),v=m.extend({set_value:function(t){this.set("value",parseFloat(t))}}),_=f.extend({get_samples:function(){return o.map(this.get("options"),function(t){return t[0]})}});f.subModelTypes={integer:m,float:v,data:g,select:_};var y=t.Model.extend({defaults:{id:null,name:null,description:null,target:null,inputs:[],outputs:[]},urlRoot:Galaxy.root+"api/tools",initialize:function(t){this.set("inputs",new p(o.map(t.inputs,function(t){return new(f.subModelTypes[t.type]||f)(t)})))},toJSON:function(){var e=t.Model.prototype.toJSON.call(this);return e.inputs=this.get("inputs").map(function(t){return t.toJSON()}),e},remove_inputs:function(t){var e=this,i=e.get("inputs").filter(function(e){return-1!==t.indexOf(e.get("type"))});e.get("inputs").remove(i)},copy:function(e){var i=new y(this.toJSON());if(e){var n=new t.Collection;i.get("inputs").each(function(t){t.get_samples()&&n.push(t)}),i.set("inputs",n)}return i},apply_search_results:function(t){return-1!==o.indexOf(t,this.attributes.id)?this.show():this.hide(),this.is_visible()},set_input_value:function(t,e){this.get("inputs").find(function(e){return e.get("name")===t}).set("value",e)},set_input_values:function(t){var e=this;o.each(o.keys(t),function(i){e.set_input_value(i,t[i])})},run:function(){return this._run()},rerun:function(t,e){return this._run({action:"rerun",target_dataset_id:t.id,regions:e})},get_inputs_dict:function(){var t={};return this.get("inputs").each(function(e){t[e.get("name")]=e.get("value")}),t},_run:function(t){var e=o.extend({tool_id:this.id,inputs:this.get_inputs_dict()},t),i=n.Deferred(),r=new l.default.ServerStateDeferred({ajax_settings:{url:this.urlRoot,data:JSON.stringify(e),dataType:"json",contentType:"application/json",type:"POST"},interval:2e3,success_fn:function(t){return"pending"!==t}});return n.when(r.go()).then(function(t){i.resolve(new c.default.DatasetCollection(t))}),i}});o.extend(y.prototype,d);var b=(t.View.extend({}),t.Collection.extend({model:y})),w=t.Model.extend(d),x=t.Model.extend({defaults:{elems:[],open:!1},clear_search_results:function(){o.each(this.attributes.elems,function(t){t.show()}),this.show(),this.set("open",!1)},apply_search_results:function(t){var e,i=!0;o.each(this.attributes.elems,function(n){n instanceof w?(e=n,e.hide()):n instanceof y&&n.apply_search_results(t)&&(i=!1,e&&e.show())}),i?this.hide():(this.show(),this.set("open",!0))}});o.extend(x.prototype,d);var C=t.Model.extend({defaults:{search_hint_string:"search tools",min_chars_for_search:3,clear_btn_url:"",visible:!0,query:"",results:null,clear_key:27},urlRoot:Galaxy.root+"api/tools",initialize:function(){this.on("change:query",this.do_search)},do_search:function(){var t=this.attributes.query;if(t.length<this.attributes.min_chars_for_search)return void this.set("results",null);var e=t;this.timer&&clearTimeout(this.timer),n("#search-clear-btn").hide(),n("#search-spinner").show();var i=this;this.timer=setTimeout(function(){"undefined"!=typeof ga&&ga("send","pageview",Galaxy.root+"?q="+e),n.get(i.urlRoot,{q:e},function(t){i.set("results",t),n("#search-spinner").hide(),n("#search-clear-btn").show()},"json")},400)},clear_search:function(){this.set("query",""),this.set("results",null)}});o.extend(C.prototype,d);var k=t.Model.extend({initialize:function(e){this.attributes.tool_search=e.tool_search,this.attributes.tool_search.on("change:results",this.apply_search_results,this),this.attributes.tools=e.tools,this.attributes.layout=new t.Collection(this.parse(e.layout))},parse:function(t){var e=this,i=function t(i){var n=i.model_class;if(n.indexOf("Tool")===n.length-4)return e.attributes.tools.get(i.id);if("ToolSection"===n){var r=o.map(i.elems,t);return i.elems=r,new x(i)}return"ToolSectionLabel"===n?new w(i):void 0};return o.map(t,i)},clear_search_results:function(){this.get("layout").each(function(t){t instanceof x?t.clear_search_results():t.show()})},apply_search_results:function(){var t=this.get("tool_search").get("results");if(null===t)return void this.clear_search_results();var e=null;this.get("layout").each(function(i){i instanceof w?(e=i,e.hide()):i instanceof y?i.apply_search_results(t)&&e&&e.show():(e=null,i.apply_search_results(t))})}}),S=t.View.extend({initialize:function(){this.model.on("change:hidden",this.update_visible,this),this.update_visible()},update_visible:function(){this.model.attributes.hidden?this.$el.hide():this.$el.show()}}),T=S.extend({tagName:"div",render:function(){var t=n("<div/>");t.append(D.tool_link(this.model.toJSON()));var e=this.model.get("form_style",null);if("upload1"===this.model.id)t.find("a").on("click",function(t){t.preventDefault(),Galaxy.upload.show()});else if("regular"===e){var i=this;t.find("a").on("click",function(t){t.preventDefault(),Galaxy.router.push("/",{tool_id:i.model.id,version:i.model.get("version")})})}return this.$el.append(t),this}}),A=S.extend({tagName:"div",className:"toolPanelLabel",render:function(){return this.$el.append(n("<span/>").text(this.model.attributes.text)),this}}),M=S.extend({tagName:"div",className:"toolSectionWrapper",initialize:function(){S.prototype.initialize.call(this),this.model.on("change:open",this.update_open,this)},render:function(){this.$el.append(D.panel_section(this.model.toJSON()));var t=this.$el.find(".toolSectionBody");return o.each(this.model.attributes.elems,function(e){if(e instanceof y){var i=new T({model:e,className:"toolTitle"});i.render(),t.append(i.$el)}else if(e instanceof w){var n=new A({model:e});n.render(),t.append(n.$el)}}),this},events:{"click .toolSectionTitle > a":"toggle"},toggle:function(){this.model.set("open",!this.model.attributes.open)},update_open:function(){this.model.attributes.open?this.$el.children(".toolSectionBody").slideDown("fast"):this.$el.children(".toolSectionBody").slideUp("fast")}}),E=t.View.extend({tagName:"div",id:"tool-search",className:"bar",events:{click:"focus_and_select","keyup :input":"query_changed","change :input":"query_changed","click #search-clear-btn":"clear"},render:function(){return this.$el.append(D.tool_search(this.model.toJSON())),this.model.is_visible()||this.$el.hide(),n("#messagebox").is(":visible")&&this.$el.css("top","95px"),this.$el.find("[title]").tooltip(),this},focus_and_select:function(){this.$el.find(":input").focus().select()},clear:function(){return this.model.clear_search(),this.$el.find(":input").val(""),this.focus_and_select(),!1},query_changed:function(t){if(this.model.attributes.clear_key&&this.model.attributes.clear_key===t.which)return this.clear(),!1;this.model.set("query",this.$el.find(":input").val())}}),O=t.View.extend({tagName:"div",className:"toolMenu",initialize:function(){this.model.get("tool_search").on("change:results",this.handle_search_results,this)},render:function(){var t=this,e=new E({model:this.model.get("tool_search")});return e.render(),t.$el.append(e.$el),this.model.get("layout").each(function(e){if(e instanceof x){var i=new M({model:e});i.render(),t.$el.append(i.$el)}else if(e instanceof y){var n=new T({model:e,className:"toolTitleNoSection"});n.render(),t.$el.append(n.$el)}else if(e instanceof w){var r=new A({model:e});r.render(),t.$el.append(r.$el)}}),t.$el.find("a.tool-link").click(function(e){var i=n(this).attr("class").split(/\s+/)[0],r=t.model.get("tools").get(i);t.trigger("tool_link_click",e,r)}),this},handle_search_results:function(){var t=this.model.get("tool_search").get("results");t&&0===t.length?n("#search-no-results").show():n("#search-no-results").hide()}}),$=t.View.extend({className:"toolForm",render:function(){this.$el.children().remove(),this.$el.append(D.tool_form(this.model.toJSON()))}}),D=(t.View.extend({className:"toolMenuAndView",initialize:function(){this.tool_panel_view=new O({collection:this.collection}),this.tool_form_view=new $},render:function(){this.tool_panel_view.render(),this.tool_panel_view.$el.css("float","left"),this.$el.append(this.tool_panel_view.$el),this.tool_form_view.$el.hide(),this.$el.append(this.tool_form_view.$el);var t=this;this.tool_panel_view.on("tool_link_click",function(e,i){e.preventDefault(),t.show_tool(i)})},show_tool:function(t){var e=this;t.fetch().done(function(){e.tool_form_view.model=t,e.tool_form_view.render(),e.tool_form_view.$el.show(),n("#left").width("650px")})}}),{tool_search:o.template(['<input id="tool-search-query" class="search-query parent-width" name="query" ','placeholder="<%- search_hint_string %>" autocomplete="off" type="text" />','<a id="search-clear-btn" title="clear search (esc)"> </a>','<span id="search-spinner" class="search-spinner fa fa-spinner fa-spin"></span>'].join("")),panel_section:o.template(['<div class="toolSectionTitle" id="title_<%- id %>">','<a href="javascript:void(0)"><span><%- name %></span></a>',"</div>",'<div id="<%- id %>" class="toolSectionBody" style="display: none;">','<div class="toolSectionBg"></div>',"<div>"].join("")),tool_link:o.template(['<a class="<%- id %> tool-link" href="<%= link %>" target="<%- target %>" minsizehint="<%- min_width %>">','<span class="labels">',"<% _.each( labels, function( label ){ %>",'<span class="label label-default label-<%- label %>">',"<%- label %>","</span>","<% }); %>","</span>",'<span class="tool-old-link">',"<%- name %>","</span>"," <%- description %>","</a>"].join("")),tool_form:o.template(['<div class="toolFormTitle"><%- tool.name %> (version <%- tool.version %>)</div>','<div class="toolFormBody">',"<% _.each( tool.inputs, function( input ){ %>",'<div class="form-row">','<label for="<%- input.name %>"><%- input.label %>:</label>','<div class="form-row-input">',"<%= input.html %>","</div>",'<div class="toolParamHelp" style="clear: both;">',"<%- input.help %>","</div>",'<div style="clear: both;"></div>',"</div>","<% }); %>","</div>",'<div class="form-row form-actions">','<input type="submit" class="btn btn-primary" name="runtool_btn" value="Execute" />',"</div>",'<div class="toolHelp">','<div class="toolHelpBody"><% tool.help %></div>',"</div>"].join(""),{variable:"tool"})});e.default={ToolParameter:f,IntegerToolParameter:m,SelectToolParameter:_,Tool:y,ToolCollection:b,ToolSearch:C,ToolPanel:k,ToolPanelView:O,ToolFormView:$}}).call(e,i(2),i(0))},function(t,e,i){"use strict";(function(t,n){function r(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var a=i(3),o=r(a),s=i(5),l=(r(s),i(119)),u=r(l),c=i(6),h=r(c),d=i(13),f=r(d),p=i(122),g=r(p),m=i(63),v=r(m);e.default=f.default.extend({initialize:function(t){var e=this;this.deferred=new u.default,f.default.prototype.initialize.call(this,t),this._update(this.model.get("initialmodel")),this.model.get("listen_to_history")&&parent.Galaxy&&parent.Galaxy.currHistoryPanel&&this.listenTo(parent.Galaxy.currHistoryPanel.collection,"change",function(){e.model.get("onchange")()}),this.$el.on("remove",function(){e._destroy()})},_update:function(t){var e=this;t=t||this.model.get("buildmodel"),t?(this.deferred.reset(),this.deferred.execute(function(i){t(i,e),i.then(function(){e._render()})})):this._render()},_destroy:function(){var t=this;this.$el.off().hide(),this.deferred.execute(function(){f.default.prototype.remove.call(t),Galaxy.emit.debug("tool-form-base::_destroy()","Destroy view.")})},_render:function(){var e=this,i=this.model.attributes;this.model.set({title:i.fixed_title||"<b>"+i.name+"</b> "+i.description+" (Galaxy Version "+i.version+")",operations:!i.hide_operations&&this._operations(),onchange:function(){e.deferred.reset(),e.deferred.execute(function(t){e.model.get("postchange")(t,e)})}}),this.render(),this.model.get("collapsible")||this.$el.append(t("<div/>").addClass("ui-margin-top-large").append(this._footer())),this.show_message&&this.message.update({status:"success",message:"Now you are using '"+i.name+"' version "+i.version+", id '"+i.id+"'.",persistent:!1}),this.show_message=!0},_operations:function(){var e=this,i=this.model.attributes,r=new h.default.ButtonMenu({icon:"fa-cubes",title:!i.narrow&&"Versions"||null,tooltip:"Select another tool version"});if(!i.sustain_version&&i.versions&&i.versions.length>1)for(var a in i.versions){var s=i.versions[a];s!=i.version&&r.addMenu({title:"Switch to "+s,version:s,icon:"fa-cube",onclick:function(){e.model.set("id",i.id.replace(i.version,this.version)),e.model.set("version",this.version),e._update()}})}else r.$el.hide();var l=new h.default.ButtonMenu({id:"options",icon:"fa-caret-down",title:!i.narrow&&"Options"||null,tooltip:"View available options"});return i.biostar_url&&(l.addMenu({icon:"fa-question-circle",title:"Question?",onclick:function(){window.open(i.biostar_url+"/p/new/post/")}}),l.addMenu({icon:"fa-search",title:(0,o.default)("Search"),onclick:function(){window.open(i.biostar_url+"/local/search/page/?q="+i.name)}})),l.addMenu({icon:"fa-share",title:(0,o.default)("Share"),onclick:function(){prompt("Copy to clipboard: Ctrl+C, Enter",window.location.origin+Galaxy.root+"root?tool_id="+i.id)}}),Galaxy.user&&Galaxy.user.get("is_admin")&&l.addMenu({icon:"fa-download",title:(0,o.default)("Download"),onclick:function(){window.location.href=Galaxy.root+"api/tools/"+i.id+"/download"}}),i.requirements&&i.requirements.length>0&&l.addMenu({icon:"fa-info-circle",title:(0,o.default)("Requirements"),onclick:function(){!this.requirements_visible||e.portlet.collapsed?(this.requirements_visible=!0,e.portlet.expand(),e.message.update({persistent:!0,message:e._templateRequirements(i),status:"info"})):(this.requirements_visible=!1,e.message.update({message:""}))}}),i.sharable_url&&l.addMenu({icon:"fa-external-link",title:(0,o.default)("See in Tool Shed"),onclick:function(){window.open(i.sharable_url)}}),t.getJSON("/api/webhooks/tool-menu/all",function(t){n.each(t,function(t){t.activate&&t.config.function&&l.addMenu({icon:t.config.icon,title:t.config.title,onclick:function(){new 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r=Math.max(0,Math.min(1,-e.x/n.square/2+.5)),a=Math.max(0,Math.min(1,-e.y/n.square/2+.5));n.setHSL([n.hsl[0],r,a])}return!1},n.mouseup=function(){t(document).unbind("mousemove",n.mousemove),t(document).unbind("mouseup",n.mouseup),t._farbtastic.dragging=!1},n.dec2hex=function(t){return(t<16?"0":"")+t.toString(16)},n.packDX=function(t,e){return"#"+n.dec2hex(e)+n.dec2hex(t)+n.dec2hex(t)+n.dec2hex(t)},n.pack=function(t){var e=Math.round(255*t[0]),i=Math.round(255*t[1]),r=Math.round(255*t[2]);return"#"+n.dec2hex(e)+n.dec2hex(i)+n.dec2hex(r)},n.unpack=function(t){function e(e){return parseInt(t.substring(e,e+2),16)/255}function e(e){return parseInt(t.substring(e,e+1),16)/15}return 7==t.length?[e(1),e(3),e(5)]:4==t.length?[e(1),e(2),e(3)]:void 0},n.HSLToRGB=function(t){var e,i,n=t[0],r=t[1],a=t[2];return i=a<=.5?a*(r+1):a+r-a*r,e=2*a-i,[this.hueToRGB(e,i,n+.33333),this.hueToRGB(e,i,n),this.hueToRGB(e,i,n-.33333)]},n.hueToRGB=function(t,e,i){return 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t.Model({onchange:null,visible:!0}).set(e),this.setElement(i(this._template())),this.$nav=this.$(".tab-navigation"),this.$content=this.$(".tab-content"),this.$el.on("click",function(){i(".tooltip").hide()}),this.render(),this.listenTo(this.model,"change",this.render,this),this.listenTo(this.collection,"add",this._add,this),this.listenTo(this.collection,"remove",this._remove,this),this.listenTo(this.collection,"change",this._change,this),this.listenTo(this.collection,"reset",this._reset,this),this.listenTo(this.collection,"add remove reset",this.render,this)},render:function(){var t=this.model.get("current");t=this.$("#"+t).length>0?t:this.first(),t&&(this.$nav.children().removeClass("active"),this.$content.children().removeClass("active"),this.$("#tab-"+t).addClass("active"),this.$("#"+t).addClass("active")),this.$el[this.model.get("visible")?"fadeIn":"fadeOut"]("fast"),this.$nav[this.size()>1?"show":"hide"]()},current:function(){return this.model.get("current")},show:function(t){t&&(this.model.set({current:t,visible:!0}),this.model.get("onchange")&&this.model.get("onchange")(t))},hide:function(){this.model.set("visible",!1)},first:function(){var t=this.collection.first();return t&&t.id},size:function(){return this.collection.length},add:function(t){this.collection.add(t)},del:function(t){this.collection.remove(t)},delAll:function(){this.collection.reset()},showTab:function(t){this.collection.get(t).set("hidden",!1)},hideTab:function(t){this.collection.get(t).set("hidden",!0)},_add:function(t){var e=this,n=t.attributes;this.$content.append(i("<div/>").attr("id",n.id).addClass("tab-pane").append(n.$el)),this.$nav.append(i(this._template_tab(n)).show().tooltip({title:n.tooltip,placement:"bottom",container:e.$el}).on("click",function(t){t.preventDefault(),e.show(n.id)})),1==this.size()&&this.show(n.id)},_remove:function(t){this.$("#tab-"+t.id).remove(),this.$("#"+t.id).remove()},_reset:function(){this.$nav.empty(),this.$content.empty()},_change:function(t){this.$("#tab-"+t.id)[t.get("hidden")?"hide":"show"]()},_template:function(){return i("<div/>").addClass("ui-tabs tabbable tabs-left").append(i("<ul/>").addClass("tab-navigation nav nav-tabs")).append(i("<div/>").addClass("tab-content"))},_template_tab:function(t){var e=i("<li/>").addClass("tab-element").attr("id","tab-"+t.id).append(i("<a/>").attr("id","tab-title-link-"+t.id)),n=e.find("a");return t.icon&&n.append(i("<i/>").addClass("tab-icon fa").addClass(t.icon)),n.append(i("<span/>").attr("id","tab-title-text-"+t.id).addClass("tab-title-text").append(t.title)),e}});e.default={View:n}}).call(e,i(2),i(0))},function(t,e,i){"use strict";(function(t,n){Object.defineProperty(e,"__esModule",{value:!0});var r=i(5),a=function(t){return t&&t.__esModule?t:{default:t}}(r),o=t.View.extend({initialize:function(e){this.model=e&&e.model||new t.Model({id:a.default.uid(),title:"",icon:"",cls:"btn btn-default",wait:!1,wait_text:"Sending...",wait_cls:"btn btn-info",disabled:!1,percentage:-1}).set(e),this.setElement(n("<button/>").attr("type","button").append(this.$icon=n("<i/>")).append(this.$title=n("<span/>")).append(this.$progress=n("<div/>").append(this.$progress_bar=n("<div/>")))),this.listenTo(this.model,"change",this.render,this),this.render()},render:function(){var t=this,e=this.model.attributes;this.$el.removeClass().addClass("ui-button-default").addClass(e.disabled&&"disabled").attr("id",e.id).attr("disabled",e.disabled).off("click").on("click",function(){n(".tooltip").hide(),e.onclick&&!t.disabled&&e.onclick()}).tooltip({title:e.tooltip,placement:"bottom"}),this.$progress.addClass("progress").css("display",-1!==e.percentage?"block":"none"),this.$progress_bar.addClass("progress-bar").css({width:e.percentage+"%"}),this.$icon.removeClass().addClass("icon fa"),this.$title.removeClass().addClass("title"),e.wait?(this.$el.addClass(e.wait_cls).prop("disabled",!0),this.$icon.addClass("fa-spinner fa-spin ui-margin-right"),this.$title.html(e.wait_text)):(this.$el.addClass(e.cls),this.$icon.addClass(e.icon),this.$title.html(e.title),e.icon&&e.title&&this.$icon.addClass("ui-margin-right"))},show:function(){this.$el.show()},hide:function(){this.$el.hide()},disable:function(){this.model.set("disabled",!0)},enable:function(){this.model.set("disabled",!1)},wait:function(){this.model.set("wait",!0)},unwait:function(){this.model.set("wait",!1)},setIcon:function(t){this.model.set("icon",t)}}),s=o.extend({initialize:function(e){this.model=e&&e.model||new t.Model({id:a.default.uid(),title:"",icon:"",cls:""}).set(e),this.setElement(n("<a/>").append(this.$icon=n("<span/>"))),this.listenTo(this.model,"change",this.render,this),this.render()},render:function(){var t=this.model.attributes;this.$el.removeClass().addClass(t.cls).attr({id:t.id,href:t.href||"javascript:void(0)",title:t.title,target:t.target||"_top",disabled:t.disabled}).tooltip({placement:"bottom"}).off("click").on("click",function(){t.onclick&&!t.disabled&&t.onclick()}),this.$icon.removeClass().addClass(t.icon)}}),l=t.View.extend({initialize:function(e){this.model=e&&e.model||new t.Model({id:a.default.uid(),title:"Select/Unselect all",icons:["fa-square-o","fa-minus-square-o","fa-check-square-o"],value:0,onchange:function(){}}).set(e),this.setElement(n("<div/>").append(this.$icon=n("<span/>")).append(this.$title=n("<span/>"))),this.listenTo(this.model,"change",this.render,this),this.render()},render:function(t){var e=this,t=this.model.attributes;this.$el.addClass("ui-button-check").off("click").on("click",function(){e.model.set("value",0===e.model.get("value")&&2||0),t.onclick&&t.onclick()}),this.$title.html(t.title),this.$icon.removeClass().addClass("icon fa ui-margin-right").addClass(t.icons[t.value])},value:function(t,e){return void 0!==t&&(e&&0!==t&&(t=t!==e&&1||2),this.model.set("value",t),this.model.get("onchange")(this.model.get("value"))),this.model.get("value")}}),u=o.extend({initialize:function(e){this.model=e&&e.model||new t.Model({id:a.default.uid(),title:"",icon:"",cls:"ui-button-icon",disabled:!1}).set(e),this.setElement(n("<div/>").append(this.$button=n("<div/>").append(this.$icon=n("<i/>")).append(this.$title=n("<span/>")))),this.listenTo(this.model,"change",this.render,this),this.render()},render:function(t){var t=this.model.attributes;this.$el.removeClass().addClass(t.cls).addClass(t.disabled&&"disabled").attr("disabled",t.disabled).attr("id",t.id).off("click").on("click",function(){n(".tooltip").hide(),!t.disabled&&t.onclick&&t.onclick()}),this.$button.addClass("button").tooltip({title:t.tooltip,placement:"bottom"}),this.$icon.removeClass().addClass("icon fa").addClass(t.icon),this.$title.addClass("title").html(t.title),t.icon&&t.title&&this.$icon.addClass("ui-margin-right")}}),c=o.extend({$menu:null,initialize:function(e){this.model=e&&e.model||new t.Model({id:"",title:"",pull:"right",icon:null,onclick:null,cls:"ui-button-icon ui-button-menu",tooltip:"",target:"",href:"",onunload:null,visible:!0,tag:""}).set(e),this.collection=new t.Collection,this.setElement(n("<div/>").append(this.$root=n("<div/>").append(this.$icon=n("<i/>")).append(this.$title=n("<span/>")))),this.listenTo(this.model,"change",this.render,this),this.listenTo(this.collection,"change add remove reset",this.render,this),this.render()},render:function(){var t=this,e=this.model.attributes;this.$el.removeClass().addClass("dropdown").addClass(e.cls).attr("id",e.id).css({display:e.visible&&this.collection.where({visible:!0}).length>0?"block":"none"}),this.$root.addClass("root button dropdown-toggle").attr("data-toggle","dropdown").tooltip({title:e.tooltip,placement:"bottom"}).off("click").on("click",function(t){n(".tooltip").hide(),t.preventDefault(),e.onclick&&e.onclick()}),this.$icon.removeClass().addClass("icon fa").addClass(e.icon),this.$title.removeClass().addClass("title").html(e.title),e.icon&&e.title&&this.$icon.addClass("ui-margin-right"),this.$menu&&this.$menu.remove(),this.collection.length>0&&(this.$menu=n("<ul/>").addClass("menu dropdown-menu").addClass("pull-"+t.model.get("pull")).attr("role","menu"),this.$el.append(this.$menu)),this.collection.each(function(e){var i=e.attributes;if(i.visible){var r=n("<a/>").addClass("dropdown-item").attr({href:i.href,target:i.target}).append(n("<i/>").addClass("fa").addClass(i.icon).css("display",i.icon?"inline-block":"none")).append(i.title).on("click",function(t){i.onclick&&(t.preventDefault(),i.onclick())});t.$menu.append(n("<li/>").append(r)),i.divider&&t.$menu.append(n("<li/>").addClass("divider"))}})},addMenu:function(t){this.collection.add(a.default.merge(t,{title:"",target:"",href:"",onclick:null,divider:!1,visible:!0,icon:null,cls:"button-menu btn-group"}))}});e.default={ButtonDefault:o,ButtonLink:s,ButtonIcon:u,ButtonCheck:l,ButtonMenu:c}}).call(e,i(2),i(0))},function(t,e,i){"use strict";(function(t,n){function r(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var a=i(1),o=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var i in t)Object.prototype.hasOwnProperty.call(t,i)&&(e[i]=t[i]);return e.default=t,e}(a),s=i(45),l=r(s),u=i(23),c=r(u),h=i(118),d=(r(h),{hidden:!1,show:function(){this.set("hidden",!1)},hide:function(){this.set("hidden",!0)},toggle:function(){this.set("hidden",!this.get("hidden"))},is_visible:function(){return!this.attributes.hidden}}),f=t.Model.extend({defaults:{name:null,label:null,type:null,value:null,html:null,num_samples:5},initialize:function(t){this.attributes.html=unescape(this.attributes.html)},copy:function(){return new f(this.toJSON())},set_value:function(t){this.set("value",t||"")}}),p=t.Collection.extend({model:f}),g=f.extend({}),m=f.extend({set_value:function(t){this.set("value",parseInt(t,10))},get_samples:function(){return d3.scale.linear().domain([this.get("min"),this.get("max")]).ticks(this.get("num_samples"))}}),v=m.extend({set_value:function(t){this.set("value",parseFloat(t))}}),_=f.extend({get_samples:function(){return o.map(this.get("options"),function(t){return t[0]})}});f.subModelTypes={integer:m,float:v,data:g,select:_};var y=t.Model.extend({defaults:{id:null,name:null,description:null,target:null,inputs:[],outputs:[]},urlRoot:Galaxy.root+"api/tools",initialize:function(t){this.set("inputs",new p(o.map(t.inputs,function(t){return new(f.subModelTypes[t.type]||f)(t)})))},toJSON:function(){var e=t.Model.prototype.toJSON.call(this);return e.inputs=this.get("inputs").map(function(t){return t.toJSON()}),e},remove_inputs:function(t){var e=this,i=e.get("inputs").filter(function(e){return-1!==t.indexOf(e.get("type"))});e.get("inputs").remove(i)},copy:function(e){var i=new y(this.toJSON());if(e){var n=new t.Collection;i.get("inputs").each(function(t){t.get_samples()&&n.push(t)}),i.set("inputs",n)}return i},apply_search_results:function(t){return-1!==o.indexOf(t,this.attributes.id)?this.show():this.hide(),this.is_visible()},set_input_value:function(t,e){this.get("inputs").find(function(e){return e.get("name")===t}).set("value",e)},set_input_values:function(t){var e=this;o.each(o.keys(t),function(i){e.set_input_value(i,t[i])})},run:function(){return this._run()},rerun:function(t,e){return this._run({action:"rerun",target_dataset_id:t.id,regions:e})},get_inputs_dict:function(){var t={};return this.get("inputs").each(function(e){t[e.get("name")]=e.get("value")}),t},_run:function(t){var e=o.extend({tool_id:this.id,inputs:this.get_inputs_dict()},t),i=n.Deferred(),r=new l.default.ServerStateDeferred({ajax_settings:{url:this.urlRoot,data:JSON.stringify(e),dataType:"json",contentType:"application/json",type:"POST"},interval:2e3,success_fn:function(t){return"pending"!==t}});return n.when(r.go()).then(function(t){i.resolve(new c.default.DatasetCollection(t))}),i}});o.extend(y.prototype,d);var b=(t.View.extend({}),t.Collection.extend({model:y})),w=t.Model.extend(d),x=t.Model.extend({defaults:{elems:[],open:!1},clear_search_results:function(){o.each(this.attributes.elems,function(t){t.show()}),this.show(),this.set("open",!1)},apply_search_results:function(t){var e,i=!0;o.each(this.attributes.elems,function(n){n instanceof w?(e=n,e.hide()):n instanceof y&&n.apply_search_results(t)&&(i=!1,e&&e.show())}),i?this.hide():(this.show(),this.set("open",!0))}});o.extend(x.prototype,d);var C=t.Model.extend({defaults:{search_hint_string:"search tools",min_chars_for_search:3,clear_btn_url:"",visible:!0,query:"",results:null,clear_key:27},urlRoot:Galaxy.root+"api/tools",initialize:function(){this.on("change:query",this.do_search)},do_search:function(){var t=this.attributes.query;if(t.length<this.attributes.min_chars_for_search)return void this.set("results",null);var e=t;this.timer&&clearTimeout(this.timer),n("#search-clear-btn").hide(),n("#search-spinner").show();var i=this;this.timer=setTimeout(function(){"undefined"!=typeof ga&&ga("send","pageview",Galaxy.root+"?q="+e),n.get(i.urlRoot,{q:e},function(t){i.set("results",t),n("#search-spinner").hide(),n("#search-clear-btn").show()},"json")},400)},clear_search:function(){this.set("query",""),this.set("results",null)}});o.extend(C.prototype,d);var k=t.Model.extend({initialize:function(e){this.attributes.tool_search=e.tool_search,this.attributes.tool_search.on("change:results",this.apply_search_results,this),this.attributes.tools=e.tools,this.attributes.layout=new t.Collection(this.parse(e.layout))},parse:function(t){var e=this,i=function t(i){var n=i.model_class;if(n.indexOf("Tool")===n.length-4)return e.attributes.tools.get(i.id);if("ToolSection"===n){var r=o.map(i.elems,t);return i.elems=r,new x(i)}return"ToolSectionLabel"===n?new w(i):void 0};return o.map(t,i)},clear_search_results:function(){this.get("layout").each(function(t){t instanceof x?t.clear_search_results():t.show()})},apply_search_results:function(){var t=this.get("tool_search").get("results");if(null===t)return void this.clear_search_results();var e=null;this.get("layout").each(function(i){i instanceof w?(e=i,e.hide()):i instanceof y?i.apply_search_results(t)&&e&&e.show():(e=null,i.apply_search_results(t))})}}),S=t.View.extend({initialize:function(){this.model.on("change:hidden",this.update_visible,this),this.update_visible()},update_visible:function(){this.model.attributes.hidden?this.$el.hide():this.$el.show()}}),T=S.extend({tagName:"div",render:function(){var t=n("<div/>");t.append(D.tool_link(this.model.toJSON()));var e=this.model.get("form_style",null);if("upload1"===this.model.id)t.find("a").on("click",function(t){t.preventDefault(),Galaxy.upload.show()});else if("regular"===e){var i=this;t.find("a").on("click",function(t){t.preventDefault(),Galaxy.router.push("/",{tool_id:i.model.id,version:i.model.get("version")})})}return this.$el.append(t),this}}),A=S.extend({tagName:"div",className:"toolPanelLabel",render:function(){return this.$el.append(n("<span/>").text(this.model.attributes.text)),this}}),M=S.extend({tagName:"div",className:"toolSectionWrapper",initialize:function(){S.prototype.initialize.call(this),this.model.on("change:open",this.update_open,this)},render:function(){this.$el.append(D.panel_section(this.model.toJSON()));var t=this.$el.find(".toolSectionBody");return o.each(this.model.attributes.elems,function(e){if(e instanceof y){var i=new T({model:e,className:"toolTitle"});i.render(),t.append(i.$el)}else if(e instanceof w){var n=new A({model:e});n.render(),t.append(n.$el)}}),this},events:{"click .toolSectionTitle > 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this.clear(),!1;this.model.set("query",this.$el.find(":input").val())}}),O=t.View.extend({tagName:"div",className:"toolMenu",initialize:function(){this.model.get("tool_search").on("change:results",this.handle_search_results,this)},render:function(){var t=this,e=new E({model:this.model.get("tool_search")});return e.render(),t.$el.append(e.$el),this.model.get("layout").each(function(e){if(e instanceof x){var i=new M({model:e});i.render(),t.$el.append(i.$el)}else if(e instanceof y){var n=new T({model:e,className:"toolTitleNoSection"});n.render(),t.$el.append(n.$el)}else if(e instanceof w){var r=new A({model:e});r.render(),t.$el.append(r.$el)}}),t.$el.find("a.tool-link").click(function(e){var i=n(this).attr("class").split(/\s+/)[0],r=t.model.get("tools").get(i);t.trigger("tool_link_click",e,r)}),this},handle_search_results:function(){var t=this.model.get("tool_search").get("results");t&&0===t.length?n("#search-no-results").show():n("#search-no-results").hide()}}),$=t.View.extend({className:"toolForm",render:function(){this.$el.children().remove(),this.$el.append(D.tool_form(this.model.toJSON()))}}),D=(t.View.extend({className:"toolMenuAndView",initialize:function(){this.tool_panel_view=new O({collection:this.collection}),this.tool_form_view=new $},render:function(){this.tool_panel_view.render(),this.tool_panel_view.$el.css("float","left"),this.$el.append(this.tool_panel_view.$el),this.tool_form_view.$el.hide(),this.$el.append(this.tool_form_view.$el);var t=this;this.tool_panel_view.on("tool_link_click",function(e,i){e.preventDefault(),t.show_tool(i)})},show_tool:function(t){var e=this;t.fetch().done(function(){e.tool_form_view.model=t,e.tool_form_view.render(),e.tool_form_view.$el.show(),n("#left").width("650px")})}}),{tool_search:o.template(['<input id="tool-search-query" class="search-query parent-width" name="query" 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'data-select2-tags' and in options of Select2 "+i.element.attr("id");i.tags=i.element.data("select2Tags")}if(r?(i.query=this.bind(function(t){var i,r,a,o={results:[],more:!1},s=t.term;a=function(e,i){var n;e.is("option")?t.matcher(s,e.text(),e)&&i.push(u.optionToData(e)):e.is("optgroup")&&(n=u.optionToData(e),e.children().each2(function(t,e){a(e,n.children)}),n.children.length>0&&i.push(n))},i=n.children(),this.getPlaceholder()!==e&&i.length>0&&(r=this.getPlaceholderOption())&&(i=i.not(r)),i.each2(function(t,e){a(e,o.results)}),t.callback(o)}),i.id=function(t){return t.id}):"query"in i||("ajax"in i?(l=i.element.data("ajax-url"),l&&l.length>0&&(i.ajax.url=l),i.query=w.call(i.element,i.ajax)):"data"in i?i.query=x(i.data):"tags"in i&&(i.query=C(i.tags),i.createSearchChoice===e&&(i.createSearchChoice=function(e){return{id:t.trim(e),text:t.trim(e)}}),i.initSelection===e&&(i.initSelection=function(e,n){var r=[];t(s(e.val(),i.separator)).each(function(){var e={id:this,text:this},n=i.tags;t.isFunction(n)&&(n=n()),t(n).each(function(){if(o(this.id,e.id))return e=this,!1}),r.push(e)}),n(r)}))),"function"!=typeof i.query)throw"query function not defined for Select2 "+i.element.attr("id");if("top"===i.createSearchChoicePosition)i.createSearchChoicePosition=function(t,e){t.unshift(e)};else if("bottom"===i.createSearchChoicePosition)i.createSearchChoicePosition=function(t,e){t.push(e)};else if("function"!=typeof i.createSearchChoicePosition)throw"invalid createSearchChoicePosition option must be 'top', 'bottom' or a custom function";return i},monitorSource:function(){var i,n=this.opts.element,r=this;n.on("change.select2",this.bind(function(t){!0!==this.opts.element.data("select2-change-triggered")&&this.initSelection()})),this._sync=this.bind(function(){var t=n.prop("disabled");t===e&&(t=!1),this.enable(!t);var i=n.prop("readonly");i===e&&(i=!1),this.readonly(i),_(this.container,this.opts.element,this.opts.adaptContainerCssClass),this.container.addClass(S(this.opts.containerCssClass,this.opts.element)),_(this.dropdown,this.opts.element,this.opts.adaptDropdownCssClass),this.dropdown.addClass(S(this.opts.dropdownCssClass,this.opts.element))}),n.length&&n[0].attachEvent&&n.each(function(){this.attachEvent("onpropertychange",r._sync)}),(i=window.MutationObserver||window.WebKitMutationObserver||window.MozMutationObserver)!==e&&(this.propertyObserver&&(delete this.propertyObserver,this.propertyObserver=null),this.propertyObserver=new i(function(e){t.each(e,r._sync)}),this.propertyObserver.observe(n.get(0),{attributes:!0,subtree:!1}))},triggerSelect:function(e){var i=t.Event("select2-selecting",{val:this.id(e),object:e,choice:e});return this.opts.element.trigger(i),!i.isDefaultPrevented()},triggerChange:function(e){e=e||{},e=t.extend({},e,{type:"change",val:this.val()}),this.opts.element.data("select2-change-triggered",!0),this.opts.element.trigger(e),this.opts.element.data("select2-change-triggered",!1),this.opts.element.click(),this.opts.blurOnChange&&this.opts.element.blur()},isInterfaceEnabled:function(){return!0===this.enabledInterface},enableInterface:function(){var t=this._enabled&&!this._readonly,e=!t;return t!==this.enabledInterface&&(this.container.toggleClass("select2-container-disabled",e),this.close(),this.enabledInterface=t,!0)},enable:function(t){t===e&&(t=!0),this._enabled!==t&&(this._enabled=t,this.opts.element.prop("disabled",!t),this.enableInterface())},disable:function(){this.enable(!1)},readonly:function(t){t===e&&(t=!1),this._readonly!==t&&(this._readonly=t,this.opts.element.prop("readonly",t),this.enableInterface())},opened:function(){return!!this.container&&this.container.hasClass("select2-dropdown-open")},positionDropdown:function(){var e,i,n,r,a,o=this.dropdown,s=this.container.offset(),l=this.container.outerHeight(!1),u=this.container.outerWidth(!1),c=o.outerHeight(!1),h=t(window),d=h.width(),f=h.height(),p=h.scrollLeft()+d,g=h.scrollTop()+f,m=s.top+l,v=s.left,_=m+c<=g,y=s.top-c>=h.scrollTop(),b=o.outerWidth(!1),w=v+b<=p,x=o.hasClass("select2-drop-above");x?(i=!0,!y&&_&&(n=!0,i=!1)):(i=!1,!_&&y&&(n=!0,i=!0)),n&&(o.hide(),s=this.container.offset(),l=this.container.outerHeight(!1),u=this.container.outerWidth(!1),c=o.outerHeight(!1),p=h.scrollLeft()+d,g=h.scrollTop()+f,m=s.top+l,v=s.left,b=o.outerWidth(!1),w=v+b<=p,o.show(),this.focusSearch()),this.opts.dropdownAutoWidth?(a=t(".select2-results",o)[0],o.addClass("select2-drop-auto-width"),o.css("width",""),b=o.outerWidth(!1)+(a.scrollHeight===a.clientHeight?0:N.width),b>u?u=b:b=u,c=o.outerHeight(!1),w=v+b<=p):this.container.removeClass("select2-drop-auto-width"),"static"!==this.body.css("position")&&(e=this.body.offset(),m-=e.top,v-=e.left),w||(v=s.left+this.container.outerWidth(!1)-b),r={left:v,width:u},i?(r.top=s.top-c,r.bottom="auto",this.container.addClass("select2-drop-above"),o.addClass("select2-drop-above")):(r.top=m,r.bottom="auto",this.container.removeClass("select2-drop-above"),o.removeClass("select2-drop-above")),r=t.extend(r,S(this.opts.dropdownCss,this.opts.element)),o.css(r)},shouldOpen:function(){var e;return!this.opened()&&(!1!==this._enabled&&!0!==this._readonly&&(e=t.Event("select2-opening"),this.opts.element.trigger(e),!e.isDefaultPrevented()))},clearDropdownAlignmentPreference:function(){this.container.removeClass("select2-drop-above"),this.dropdown.removeClass("select2-drop-above")},open:function(){return!!this.shouldOpen()&&(this.opening(),I.on("mousemove.select2Event",function(t){L.x=t.pageX,L.y=t.pageY}),!0)},opening:function(){var e,n=this.containerEventName,r="scroll."+n,a="resize."+n,o="orientationchange."+n;this.container.addClass("select2-dropdown-open").addClass("select2-container-active"),this.clearDropdownAlignmentPreference(),this.dropdown[0]!==this.body.children().last()[0]&&this.dropdown.detach().appendTo(this.body),e=t("#select2-drop-mask"),0==e.length&&(e=t(document.createElement("div")),e.attr("id","select2-drop-mask").attr("class","select2-drop-mask"),e.hide(),e.appendTo(this.body),e.on("mousedown touchstart click",function(n){i(e);var r,a=t("#select2-drop");a.length>0&&(r=a.data("select2"),r.opts.selectOnBlur&&r.selectHighlighted({noFocus:!0}),r.close(),n.preventDefault(),n.stopPropagation())})),this.dropdown.prev()[0]!==e[0]&&this.dropdown.before(e),t("#select2-drop").removeAttr("id"),this.dropdown.attr("id","select2-drop"),e.show(),this.positionDropdown(),this.dropdown.show(),this.positionDropdown(),this.dropdown.addClass("select2-drop-active");var s=this;this.container.parents().add(window).each(function(){t(this).on(a+" "+r+" "+o,function(t){s.opened()&&s.positionDropdown()})})},close:function(){if(this.opened()){var e=this.containerEventName,i="scroll."+e,n="resize."+e,r="orientationchange."+e;this.container.parents().add(window).each(function(){t(this).off(i).off(n).off(r)}),this.clearDropdownAlignmentPreference(),t("#select2-drop-mask").hide(),this.dropdown.removeAttr("id"),this.dropdown.hide(),this.container.removeClass("select2-dropdown-open").removeClass("select2-container-active"),this.results.empty(),I.off("mousemove.select2Event"),this.clearSearch(),this.search.removeClass("select2-active"),this.opts.element.trigger(t.Event("select2-close"))}},externalSearch:function(t){this.open(),this.search.val(t),this.updateResults(!1)},clearSearch:function(){},getMaximumSelectionSize:function(){return S(this.opts.maximumSelectionSize,this.opts.element)},ensureHighlightVisible:function(){var e,i,n,r,a,o,s,l,u=this.results;if(!((i=this.highlight())<0)){if(0==i)return void u.scrollTop(0);e=this.findHighlightableChoices().find(".select2-result-label"),n=t(e[i]),l=(n.offset()||{}).top||0,r=l+n.outerHeight(!0),i===e.length-1&&(s=u.find("li.select2-more-results"),s.length>0&&(r=s.offset().top+s.outerHeight(!0))),a=u.offset().top+u.outerHeight(!0),r>a&&u.scrollTop(u.scrollTop()+(r-a)),o=l-u.offset().top,o<0&&"none"!=n.css("display")&&u.scrollTop(u.scrollTop()+o)}},findHighlightableChoices:function(){return this.results.find(".select2-result-selectable:not(.select2-disabled):not(.select2-selected)")},moveHighlight:function(e){for(var i=this.findHighlightableChoices(),n=this.highlight();n>-1&&n<i.length;){n+=e;var r=t(i[n]);if(r.hasClass("select2-result-selectable")&&!r.hasClass("select2-disabled")&&!r.hasClass("select2-selected")){this.highlight(n);break}}},highlight:function(e){var i,n,a=this.findHighlightableChoices();if(0===arguments.length)return r(a.filter(".select2-highlighted")[0],a.get());e>=a.length&&(e=a.length-1),e<0&&(e=0),this.removeHighlight(),i=t(a[e]),i.addClass("select2-highlighted"),this.search.attr("aria-activedescendant",i.find(".select2-result-label").attr("id")),this.ensureHighlightVisible(),this.liveRegion.text(i.text()),(n=i.data("select2-data"))&&this.opts.element.trigger({type:"select2-highlight",val:this.id(n),choice:n})},removeHighlight:function(){this.results.find(".select2-highlighted").removeClass("select2-highlighted")},touchMoved:function(){this._touchMoved=!0},clearTouchMoved:function(){this._touchMoved=!1},countSelectableResults:function(){return this.findHighlightableChoices().length},highlightUnderEvent:function(e){var i=t(e.target).closest(".select2-result-selectable");if(i.length>0&&!i.is(".select2-highlighted")){var n=this.findHighlightableChoices();this.highlight(n.index(i))}else 0==i.length&&this.removeHighlight()},loadMoreIfNeeded:function(){var t=this.results,e=t.find("li.select2-more-results"),i=this.resultsPage+1,n=this,r=this.search.val(),a=this.context;0!==e.length&&e.offset().top-t.offset().top-t.height()<=this.opts.loadMorePadding&&(e.addClass("select2-active"),this.opts.query({element:this.opts.element,term:r,page:i,context:a,matcher:this.opts.matcher,callback:this.bind(function(o){n.opened()&&(n.opts.populateResults.call(this,t,o.results,{term:r,page:i,context:a}),n.postprocessResults(o,!1,!1),!0===o.more?(e.detach().appendTo(t).text(S(n.opts.formatLoadMore,n.opts.element,i+1)),window.setTimeout(function(){n.loadMoreIfNeeded()},10)):e.remove(),n.positionDropdown(),n.resultsPage=i,n.context=o.context,this.opts.element.trigger({type:"select2-loaded",items:o}))})}))},tokenize:function(){},updateResults:function(i){function n(){u.removeClass("select2-active"),d.positionDropdown(),c.find(".select2-no-results,.select2-selection-limit,.select2-searching").length?d.liveRegion.text(c.text()):d.liveRegion.text(d.opts.formatMatches(c.find(".select2-result-selectable").length))}function r(t){c.html(t),n()}var a,s,l,u=this.search,c=this.results,h=this.opts,d=this,f=u.val(),p=t.data(this.container,"select2-last-term");if((!0===i||!p||!o(f,p))&&(t.data(this.container,"select2-last-term",f),!0===i||!1!==this.showSearchInput&&this.opened())){l=++this.queryCount;var g=this.getMaximumSelectionSize();if(g>=1&&(a=this.data(),t.isArray(a)&&a.length>=g&&k(h.formatSelectionTooBig,"formatSelectionTooBig")))return void r("<li class='select2-selection-limit'>"+S(h.formatSelectionTooBig,h.element,g)+"</li>");if(u.val().length<h.minimumInputLength)return r(k(h.formatInputTooShort,"formatInputTooShort")?"<li class='select2-no-results'>"+S(h.formatInputTooShort,h.element,u.val(),h.minimumInputLength)+"</li>":""),void(i&&this.showSearch&&this.showSearch(!0));if(h.maximumInputLength&&u.val().length>h.maximumInputLength)return void r(k(h.formatInputTooLong,"formatInputTooLong")?"<li class='select2-no-results'>"+S(h.formatInputTooLong,h.element,u.val(),h.maximumInputLength)+"</li>":"");h.formatSearching&&0===this.findHighlightableChoices().length&&r("<li class='select2-searching'>"+S(h.formatSearching,h.element)+"</li>"),u.addClass("select2-active"),this.removeHighlight(),s=this.tokenize(),s!=e&&null!=s&&u.val(s),this.resultsPage=1,h.query({element:h.element,term:u.val(),page:this.resultsPage,context:null,matcher:h.matcher,callback:this.bind(function(a){var s;if(l==this.queryCount){if(!this.opened())return void this.search.removeClass("select2-active");if(a.hasError!==e&&k(h.formatAjaxError,"formatAjaxError"))return void r("<li class='select2-ajax-error'>"+S(h.formatAjaxError,h.element,a.jqXHR,a.textStatus,a.errorThrown)+"</li>");if(this.context=a.context===e?null:a.context,this.opts.createSearchChoice&&""!==u.val()&&(s=this.opts.createSearchChoice.call(d,u.val(),a.results))!==e&&null!==s&&d.id(s)!==e&&null!==d.id(s)&&0===t(a.results).filter(function(){return o(d.id(this),d.id(s))}).length&&this.opts.createSearchChoicePosition(a.results,s),0===a.results.length&&k(h.formatNoMatches,"formatNoMatches"))return void r("<li class='select2-no-results'>"+S(h.formatNoMatches,h.element,u.val())+"</li>");c.empty(),d.opts.populateResults.call(this,c,a.results,{term:u.val(),page:this.resultsPage,context:null}),!0===a.more&&k(h.formatLoadMore,"formatLoadMore")&&(c.append("<li class='select2-more-results'>"+h.escapeMarkup(S(h.formatLoadMore,h.element,this.resultsPage))+"</li>"),window.setTimeout(function(){d.loadMoreIfNeeded()},10)),this.postprocessResults(a,i),n(),this.opts.element.trigger({type:"select2-loaded",items:a})}})})}},cancel:function(){this.close()},blur:function(){this.opts.selectOnBlur&&this.selectHighlighted({noFocus:!0}),this.close(),this.container.removeClass("select2-container-active"),this.search[0]===document.activeElement&&this.search.blur(),this.clearSearch(),this.selection.find(".select2-search-choice-focus").removeClass("select2-search-choice-focus")},focusSearch:function(){f(this.search)},selectHighlighted:function(t){if(this._touchMoved)return void this.clearTouchMoved();var e=this.highlight(),i=this.results.find(".select2-highlighted"),n=i.closest(".select2-result").data("select2-data");n?(this.highlight(e),this.onSelect(n,t)):t&&t.noFocus&&this.close()},getPlaceholder:function(){var t;return this.opts.element.attr("placeholder")||this.opts.element.attr("data-placeholder")||this.opts.element.data("placeholder")||this.opts.placeholder||((t=this.getPlaceholderOption())!==e?t.text():e)},getPlaceholderOption:function(){if(this.select){var i=this.select.children("option").first();if(this.opts.placeholderOption!==e)return"first"===this.opts.placeholderOption&&i||"function"==typeof this.opts.placeholderOption&&this.opts.placeholderOption(this.select);if(""===t.trim(i.text())&&""===i.val())return i}},initContainerWidth:function(){function i(){var i,n,r,a,o,s;if("off"===this.opts.width)return null;if("element"===this.opts.width)return 0===this.opts.element.outerWidth(!1)?"auto":this.opts.element.outerWidth(!1)+"px";if("copy"===this.opts.width||"resolve"===this.opts.width){if((i=this.opts.element.attr("style"))!==e)for(n=i.split(";"),a=0,o=n.length;a<o;a+=1)if(s=n[a].replace(/\s/g,""),null!==(r=s.match(/^width:(([-+]?([0-9]*\.)?[0-9]+)(px|em|ex|%|in|cm|mm|pt|pc))/i))&&r.length>=1)return r[1];return"resolve"===this.opts.width?(i=this.opts.element.css("width"),i.indexOf("%")>0?i:0===this.opts.element.outerWidth(!1)?"auto":this.opts.element.outerWidth(!1)+"px"):null}return t.isFunction(this.opts.width)?this.opts.width():this.opts.width}var n=i.call(this);null!==n&&this.container.css("width",n)}}),D=E($,{createContainer:function(){return t(document.createElement("div")).attr({class:"select2-container"}).html(["<a href='javascript:void(0)' class='select2-choice' tabindex='-1'>","   <span class='select2-chosen'>&#160;</span><abbr class='select2-search-choice-close'></abbr>","   <span class='select2-arrow' role='presentation'><b role='presentation'></b></span>","</a>","<label for='' class='select2-offscreen'></label>","<input class='select2-focusser select2-offscreen' type='text' aria-haspopup='true' role='button' />","<div class='select2-drop select2-display-none'>","   <div class='select2-search'>","       <label for='' class='select2-offscreen'></label>","       <input type='text' autocomplete='off' autocorrect='off' autocapitalize='off' spellcheck='false' class='select2-input' role='combobox' aria-expanded='true'","       aria-autocomplete='list' />","   </div>","   <ul class='select2-results' role='listbox'>","   </ul>","</div>"].join(""))},enableInterface:function(){this.parent.enableInterface.apply(this,arguments)&&this.focusser.prop("disabled",!this.isInterfaceEnabled())},opening:function(){var i,n,r;this.opts.minimumResultsForSearch>=0&&this.showSearch(!0),this.parent.opening.apply(this,arguments),!1!==this.showSearchInput&&this.search.val(this.focusser.val()),this.opts.shouldFocusInput(this)&&(this.search.focus(),i=this.search.get(0),i.createTextRange?(n=i.createTextRange(),n.collapse(!1),n.select()):i.setSelectionRange&&(r=this.search.val().length,i.setSelectionRange(r,r))),""===this.search.val()&&this.nextSearchTerm!=e&&(this.search.val(this.nextSearchTerm),this.search.select()),this.focusser.prop("disabled",!0).val(""),this.updateResults(!0),this.opts.element.trigger(t.Event("select2-open"))},close:function(){this.opened()&&(this.parent.close.apply(this,arguments),this.focusser.prop("disabled",!1),this.opts.shouldFocusInput(this)&&this.focusser.focus())},focus:function(){this.opened()?this.close():(this.focusser.prop("disabled",!1),this.opts.shouldFocusInput(this)&&this.focusser.focus())},isFocused:function(){return this.container.hasClass("select2-container-active")},cancel:function(){this.parent.cancel.apply(this,arguments),this.focusser.prop("disabled",!1),this.opts.shouldFocusInput(this)&&this.focusser.focus()},destroy:function(){t("label[for='"+this.focusser.attr("id")+"']").attr("for",this.opts.element.attr("id")),this.parent.destroy.apply(this,arguments),M.call(this,"selection","focusser")},initContainer:function(){var e,n,r=this.container,a=this.dropdown,o=P();this.opts.minimumResultsForSearch<0?this.showSearch(!1):this.showSearch(!0),this.selection=e=r.find(".select2-choice"),this.focusser=r.find(".select2-focusser"),e.find(".select2-chosen").attr("id","select2-chosen-"+o),this.focusser.attr("aria-labelledby","select2-chosen-"+o),this.results.attr("id","select2-results-"+o),this.search.attr("aria-owns","select2-results-"+o),this.focusser.attr("id","s2id_autogen"+o),n=t("label[for='"+this.opts.element.attr("id")+"']"),this.focusser.prev().text(n.text()).attr("for",this.focusser.attr("id"));var s=this.opts.element.attr("title");this.opts.element.attr("title",s||n.text()),this.focusser.attr("tabindex",this.elementTabIndex),this.search.attr("id",this.focusser.attr("id")+"_search"),this.search.prev().text(t("label[for='"+this.focusser.attr("id")+"']").text()).attr("for",this.search.attr("id")),this.search.on("keydown",this.bind(function(t){if(this.isInterfaceEnabled()&&229!=t.keyCode){if(t.which===O.PAGE_UP||t.which===O.PAGE_DOWN)return void g(t);switch(t.which){case O.UP:case O.DOWN:return this.moveHighlight(t.which===O.UP?-1:1),void g(t);case O.ENTER:return this.selectHighlighted(),void g(t);case O.TAB:return void this.selectHighlighted({noFocus:!0});case O.ESC:return this.cancel(t),void g(t)}}})),this.search.on("blur",this.bind(function(t){document.activeElement===this.body.get(0)&&window.setTimeout(this.bind(function(){this.opened()&&this.search.focus()}),0)})),this.focusser.on("keydown",this.bind(function(t){if(this.isInterfaceEnabled()&&t.which!==O.TAB&&!O.isControl(t)&&!O.isFunctionKey(t)&&t.which!==O.ESC){if(!1===this.opts.openOnEnter&&t.which===O.ENTER)return void g(t);if(t.which==O.DOWN||t.which==O.UP||t.which==O.ENTER&&this.opts.openOnEnter){if(t.altKey||t.ctrlKey||t.shiftKey||t.metaKey)return;return this.open(),void g(t)}return t.which==O.DELETE||t.which==O.BACKSPACE?(this.opts.allowClear&&this.clear(),void g(t)):void 0}})),u(this.focusser),this.focusser.on("keyup-change input",this.bind(function(t){if(this.opts.minimumResultsForSearch>=0){if(t.stopPropagation(),this.opened())return;this.open()}})),e.on("mousedown touchstart","abbr",this.bind(function(t){this.isInterfaceEnabled()&&(this.clear(),m(t),this.close(),this.selection.focus())})),e.on("mousedown touchstart",this.bind(function(n){i(e),this.container.hasClass("select2-container-active")||this.opts.element.trigger(t.Event("select2-focus")),this.opened()?this.close():this.isInterfaceEnabled()&&this.open(),g(n)})),a.on("mousedown touchstart",this.bind(function(){this.opts.shouldFocusInput(this)&&this.search.focus()})),e.on("focus",this.bind(function(t){g(t)})),this.focusser.on("focus",this.bind(function(){this.container.hasClass("select2-container-active")||this.opts.element.trigger(t.Event("select2-focus")),this.container.addClass("select2-container-active")})).on("blur",this.bind(function(){this.opened()||(this.container.removeClass("select2-container-active"),this.opts.element.trigger(t.Event("select2-blur")))})),this.search.on("focus",this.bind(function(){this.container.hasClass("select2-container-active")||this.opts.element.trigger(t.Event("select2-focus")),this.container.addClass("select2-container-active")})),this.initContainerWidth(),this.opts.element.addClass("select2-offscreen"),this.setPlaceholder()},clear:function(e){var i=this.selection.data("select2-data");if(i){var n=t.Event("select2-clearing");if(this.opts.element.trigger(n),n.isDefaultPrevented())return;var r=this.getPlaceholderOption();this.opts.element.val(r?r.val():""),this.selection.find(".select2-chosen").empty(),this.selection.removeData("select2-data"),this.setPlaceholder(),!1!==e&&(this.opts.element.trigger({type:"select2-removed",val:this.id(i),choice:i}),this.triggerChange({removed:i}))}},initSelection:function(){if(this.isPlaceholderOptionSelected())this.updateSelection(null),this.close(),this.setPlaceholder();else{var t=this;this.opts.initSelection.call(null,this.opts.element,function(i){i!==e&&null!==i&&(t.updateSelection(i),t.close(),t.setPlaceholder(),t.nextSearchTerm=t.opts.nextSearchTerm(i,t.search.val()))})}},isPlaceholderOptionSelected:function(){var t;return this.getPlaceholder()!==e&&((t=this.getPlaceholderOption())!==e&&t.prop("selected")||""===this.opts.element.val()||this.opts.element.val()===e||null===this.opts.element.val())},prepareOpts:function(){var e=this.parent.prepareOpts.apply(this,arguments),i=this;return"select"===e.element.get(0).tagName.toLowerCase()?e.initSelection=function(t,e){var n=t.find("option").filter(function(){return this.selected&&!this.disabled});e(i.optionToData(n))}:"data"in e&&(e.initSelection=e.initSelection||function(i,n){var r=i.val(),a=null;e.query({matcher:function(t,i,n){var s=o(r,e.id(n));return s&&(a=n),s},callback:t.isFunction(n)?function(){n(a)}:t.noop})}),e},getPlaceholder:function(){return this.select&&this.getPlaceholderOption()===e?e:this.parent.getPlaceholder.apply(this,arguments)},setPlaceholder:function(){var t=this.getPlaceholder();if(this.isPlaceholderOptionSelected()&&t!==e){if(this.select&&this.getPlaceholderOption()===e)return;this.selection.find(".select2-chosen").html(this.opts.escapeMarkup(t)),this.selection.addClass("select2-default"),this.container.removeClass("select2-allowclear")}},postprocessResults:function(t,e,i){var n=0,r=this;if(this.findHighlightableChoices().each2(function(t,e){if(o(r.id(e.data("select2-data")),r.opts.element.val()))return n=t,!1}),!1!==i&&(!0===e&&n>=0?this.highlight(n):this.highlight(0)),!0===e){var a=this.opts.minimumResultsForSearch;a>=0&&this.showSearch(T(t.results)>=a)}},showSearch:function(e){this.showSearchInput!==e&&(this.showSearchInput=e,this.dropdown.find(".select2-search").toggleClass("select2-search-hidden",!e),this.dropdown.find(".select2-search").toggleClass("select2-offscreen",!e),t(this.dropdown,this.container).toggleClass("select2-with-searchbox",e))},onSelect:function(t,e){if(this.triggerSelect(t)){var i=this.opts.element.val(),n=this.data();this.opts.element.val(this.id(t)),this.updateSelection(t),this.opts.element.trigger({type:"select2-selected",val:this.id(t),choice:t}),this.nextSearchTerm=this.opts.nextSearchTerm(t,this.search.val()),this.close(),e&&e.noFocus||!this.opts.shouldFocusInput(this)||this.focusser.focus(),o(i,this.id(t))||this.triggerChange({added:t,removed:n})}},updateSelection:function(t){var i,n,r=this.selection.find(".select2-chosen");this.selection.data("select2-data",t),r.empty(),null!==t&&(i=this.opts.formatSelection(t,r,this.opts.escapeMarkup)),i!==e&&r.append(i),n=this.opts.formatSelectionCssClass(t,r),n!==e&&r.addClass(n),this.selection.removeClass("select2-default"),this.opts.allowClear&&this.getPlaceholder()!==e&&this.container.addClass("select2-allowclear")},val:function(){var t,i=!1,n=null,r=this,a=this.data();if(0===arguments.length)return this.opts.element.val();if(t=arguments[0],arguments.length>1&&(i=arguments[1]),this.select)this.select.val(t).find("option").filter(function(){return this.selected}).each2(function(t,e){return n=r.optionToData(e),!1}),this.updateSelection(n),this.setPlaceholder(),i&&this.triggerChange({added:n,removed:a});else{if(!t&&0!==t)return void this.clear(i);if(this.opts.initSelection===e)throw new Error("cannot call val() if initSelection() is not defined");this.opts.element.val(t),this.opts.initSelection(this.opts.element,function(t){r.opts.element.val(t?r.id(t):""),r.updateSelection(t),r.setPlaceholder(),i&&r.triggerChange({added:t,removed:a})})}},clearSearch:function(){this.search.val(""),this.focusser.val("")},data:function(t){var i,n=!1;if(0===arguments.length)return i=this.selection.data("select2-data"),i==e&&(i=null),i;arguments.length>1&&(n=arguments[1]),t?(i=this.data(),this.opts.element.val(t?this.id(t):""),this.updateSelection(t),n&&this.triggerChange({added:t,removed:i})):this.clear(n)}}),j=E($,{createContainer:function(){return t(document.createElement("div")).attr({class:"select2-container select2-container-multi"}).html(["<ul class='select2-choices'>","  <li class='select2-search-field'>","    <label for='' class='select2-offscreen'></label>","    <input type='text' autocomplete='off' autocorrect='off' autocapitalize='off' spellcheck='false' class='select2-input'>","  </li>","</ul>","<div class='select2-drop select2-drop-multi select2-display-none'>","   <ul class='select2-results'>","   </ul>","</div>"].join(""))},prepareOpts:function(){var e=this.parent.prepareOpts.apply(this,arguments),i=this;return"select"===e.element.get(0).tagName.toLowerCase()?e.initSelection=function(t,e){var n=[];t.find("option").filter(function(){return this.selected&&!this.disabled}).each2(function(t,e){n.push(i.optionToData(e))}),e(n)}:"data"in e&&(e.initSelection=e.initSelection||function(i,n){var r=s(i.val(),e.separator),a=[];e.query({matcher:function(i,n,s){var l=t.grep(r,function(t){return o(t,e.id(s))}).length;return l&&a.push(s),l},callback:t.isFunction(n)?function(){for(var t=[],i=0;i<r.length;i++)for(var s=r[i],l=0;l<a.length;l++){var u=a[l];if(o(s,e.id(u))){t.push(u),a.splice(l,1);break}}n(t)}:t.noop})}),e},selectChoice:function(t){var e=this.container.find(".select2-search-choice-focus");e.length&&t&&t[0]==e[0]||(e.length&&this.opts.element.trigger("choice-deselected",e),e.removeClass("select2-search-choice-focus"),t&&t.length&&(this.close(),t.addClass("select2-search-choice-focus"),this.opts.element.trigger("choice-selected",t)))},destroy:function(){t("label[for='"+this.search.attr("id")+"']").attr("for",this.opts.element.attr("id")),this.parent.destroy.apply(this,arguments),M.call(this,"searchContainer","selection")},initContainer:function(){var e,i=".select2-choices";this.searchContainer=this.container.find(".select2-search-field"),this.selection=e=this.container.find(i);var n=this;this.selection.on("click",".select2-search-choice:not(.select2-locked)",function(e){n.search[0].focus(),n.selectChoice(t(this))}),this.search.attr("id","s2id_autogen"+P()),this.search.prev().text(t("label[for='"+this.opts.element.attr("id")+"']").text()).attr("for",this.search.attr("id")),this.search.on("input paste",this.bind(function(){this.search.attr("placeholder")&&0==this.search.val().length||this.isInterfaceEnabled()&&(this.opened()||this.open())})),this.search.attr("tabindex",this.elementTabIndex),this.keydowns=0,this.search.on("keydown",this.bind(function(t){if(this.isInterfaceEnabled()){++this.keydowns;var i=e.find(".select2-search-choice-focus"),n=i.prev(".select2-search-choice:not(.select2-locked)"),r=i.next(".select2-search-choice:not(.select2-locked)"),a=p(this.search);if(i.length&&(t.which==O.LEFT||t.which==O.RIGHT||t.which==O.BACKSPACE||t.which==O.DELETE||t.which==O.ENTER)){var o=i;return t.which==O.LEFT&&n.length?o=n:t.which==O.RIGHT?o=r.length?r:null:t.which===O.BACKSPACE?this.unselect(i.first())&&(this.search.width(10),o=n.length?n:r):t.which==O.DELETE?this.unselect(i.first())&&(this.search.width(10),o=r.length?r:null):t.which==O.ENTER&&(o=null),this.selectChoice(o),g(t),void(o&&o.length||this.open())}if((t.which===O.BACKSPACE&&1==this.keydowns||t.which==O.LEFT)&&0==a.offset&&!a.length)return this.selectChoice(e.find(".select2-search-choice:not(.select2-locked)").last()),void g(t);if(this.selectChoice(null),this.opened())switch(t.which){case O.UP:case O.DOWN:return this.moveHighlight(t.which===O.UP?-1:1),void g(t);case O.ENTER:return this.selectHighlighted(),void g(t);case O.TAB:return this.selectHighlighted({noFocus:!0}),void this.close();case O.ESC:return this.cancel(t),void g(t)}if(t.which!==O.TAB&&!O.isControl(t)&&!O.isFunctionKey(t)&&t.which!==O.BACKSPACE&&t.which!==O.ESC){if(t.which===O.ENTER){if(!1===this.opts.openOnEnter)return;if(t.altKey||t.ctrlKey||t.shiftKey||t.metaKey)return}this.open(),t.which!==O.PAGE_UP&&t.which!==O.PAGE_DOWN||g(t),t.which===O.ENTER&&g(t)}}})),this.search.on("keyup",this.bind(function(t){this.keydowns=0,this.resizeSearch()})),this.search.on("blur",this.bind(function(e){this.container.removeClass("select2-container-active"),this.search.removeClass("select2-focused"),this.selectChoice(null),this.opened()||this.clearSearch(),e.stopImmediatePropagation(),this.opts.element.trigger(t.Event("select2-blur"))})),this.container.on("click",i,this.bind(function(e){this.isInterfaceEnabled()&&(t(e.target).closest(".select2-search-choice").length>0||(this.selectChoice(null),this.clearPlaceholder(),this.container.hasClass("select2-container-active")||this.opts.element.trigger(t.Event("select2-focus")),this.open(),this.focusSearch(),e.preventDefault()))})),this.container.on("focus",i,this.bind(function(){this.isInterfaceEnabled()&&(this.container.hasClass("select2-container-active")||this.opts.element.trigger(t.Event("select2-focus")),this.container.addClass("select2-container-active"),this.dropdown.addClass("select2-drop-active"),this.clearPlaceholder())})),this.initContainerWidth(),this.opts.element.addClass("select2-offscreen"),this.clearSearch()},enableInterface:function(){this.parent.enableInterface.apply(this,arguments)&&this.search.prop("disabled",!this.isInterfaceEnabled())},initSelection:function(){if(""===this.opts.element.val()&&""===this.opts.element.text()&&(this.updateSelection([]),this.close(),this.clearSearch()),this.select||""!==this.opts.element.val()){var t=this;this.opts.initSelection.call(null,this.opts.element,function(i){i!==e&&null!==i&&(t.updateSelection(i),t.close(),t.clearSearch())})}},clearSearch:function(){var t=this.getPlaceholder(),i=this.getMaxSearchWidth();t!==e&&0===this.getVal().length&&!1===this.search.hasClass("select2-focused")?(this.search.val(t).addClass("select2-default"),this.search.width(i>0?i:this.container.css("width"))):this.search.val("").width(10)},clearPlaceholder:function(){this.search.hasClass("select2-default")&&this.search.val("").removeClass("select2-default")},opening:function(){this.clearPlaceholder(),this.resizeSearch(),this.parent.opening.apply(this,arguments),this.focusSearch(),""===this.search.val()&&this.nextSearchTerm!=e&&(this.search.val(this.nextSearchTerm),this.search.select()),this.updateResults(!0),this.opts.shouldFocusInput(this)&&this.search.focus(),this.opts.element.trigger(t.Event("select2-open"))},close:function(){this.opened()&&this.parent.close.apply(this,arguments)},focus:function(){this.close(),this.search.focus()},isFocused:function(){return this.search.hasClass("select2-focused")},updateSelection:function(e){var i=[],n=[],a=this;t(e).each(function(){r(a.id(this),i)<0&&(i.push(a.id(this)),n.push(this))}),e=n,this.selection.find(".select2-search-choice").remove(),t(e).each(function(){a.addSelectedChoice(this)}),a.postprocessResults()},tokenize:function(){var t=this.search.val();null!=(t=this.opts.tokenizer.call(this,t,this.data(),this.bind(this.onSelect),this.opts))&&t!=e&&(this.search.val(t),t.length>0&&this.open())},onSelect:function(t,i){this.triggerSelect(t)&&""!==t.text&&(this.addSelectedChoice(t),this.opts.element.trigger({type:"selected",val:this.id(t),choice:t}),this.nextSearchTerm=this.opts.nextSearchTerm(t,this.search.val()),this.moveHighlight(1),!this.select&&this.opts.closeOnSelect||this.postprocessResults(t,!1,!0===this.opts.closeOnSelect),this.opts.closeOnSelect?(this.clearSearch(),this.updateResults(),this.close(),this.search.width(10)):this.countSelectableResults()>0?(this.search.width(10),this.resizeSearch(),this.getMaximumSelectionSize()>0&&this.val().length>=this.getMaximumSelectionSize()?this.updateResults(!0):this.nextSearchTerm!=e&&(this.search.val(this.nextSearchTerm),this.updateResults(),this.search.select()),this.positionDropdown()):(this.close(),this.search.width(10)),this.triggerChange({added:t}),i&&i.noFocus||this.focusSearch())},cancel:function(){this.close(),this.focusSearch()},addSelectedChoice:function(i){var n,r,a=!i.locked,o=t("<li class='select2-search-choice'>    <div></div>    <a href='#' class='select2-search-choice-close' tabindex='-1'></a></li>"),s=t("<li class='select2-search-choice select2-locked'><div></div></li>"),l=a?o:s,u=this.id(i),c=this.getVal();n=this.opts.formatSelection(i,l.find("div"),this.opts.escapeMarkup),n!=e&&l.find("div").replaceWith("<div>"+n+"</div>"),r=this.opts.formatSelectionCssClass(i,l.find("div")),r!=e&&l.addClass(r),a&&l.find(".select2-search-choice-close").on("mousedown",g).on("click dblclick",this.bind(function(e){this.isInterfaceEnabled()&&(this.unselect(t(e.target)),this.selection.find(".select2-search-choice-focus").removeClass("select2-search-choice-focus"),g(e),this.close(),this.focusSearch())})).on("focus",this.bind(function(){this.isInterfaceEnabled()&&(this.container.addClass("select2-container-active"),this.dropdown.addClass("select2-drop-active"))})),l.data("select2-data",i),l.insertBefore(this.searchContainer),c.push(u),this.setVal(c)},unselect:function(e){var i,n,a=this.getVal();if(e=e.closest(".select2-search-choice"),0===e.length)throw"Invalid argument: "+e+". Must be .select2-search-choice";if(i=e.data("select2-data")){var o=t.Event("select2-removing");if(o.val=this.id(i),o.choice=i,this.opts.element.trigger(o),o.isDefaultPrevented())return!1;for(;(n=r(this.id(i),a))>=0;)a.splice(n,1),this.setVal(a),this.select&&this.postprocessResults();return e.remove(),this.opts.element.trigger({type:"select2-removed",val:this.id(i),choice:i}),this.triggerChange({removed:i}),!0}},postprocessResults:function(t,e,i){var n=this.getVal(),a=this.results.find(".select2-result"),o=this.results.find(".select2-result-with-children"),s=this;a.each2(function(t,e){r(s.id(e.data("select2-data")),n)>=0&&(e.addClass("select2-selected"),e.find(".select2-result-selectable").addClass("select2-selected"))}),o.each2(function(t,e){e.is(".select2-result-selectable")||0!==e.find(".select2-result-selectable:not(.select2-selected)").length||e.addClass("select2-selected")}),-1==this.highlight()&&!1!==i&&s.highlight(0),!this.opts.createSearchChoice&&!a.filter(".select2-result:not(.select2-selected)").length>0&&(!t||t&&!t.more&&0===this.results.find(".select2-no-results").length)&&k(s.opts.formatNoMatches,"formatNoMatches")&&this.results.append("<li class='select2-no-results'>"+S(s.opts.formatNoMatches,s.opts.element,s.search.val())+"</li>")},getMaxSearchWidth:function(){return this.selection.width()-l(this.search)},resizeSearch:function(){var t,e,i,n,r,a=l(this.search);t=v(this.search)+10,e=this.search.offset().left,i=this.selection.width(),n=this.selection.offset().left,r=i-(e-n)-a,r<t&&(r=i-a),r<40&&(r=i-a),r<=0&&(r=t),this.search.width(Math.floor(r))},getVal:function(){var t;return this.select?(t=this.select.val(),null===t?[]:t):(t=this.opts.element.val(),s(t,this.opts.separator))},setVal:function(e){var i;this.select?this.select.val(e):(i=[],t(e).each(function(){r(this,i)<0&&i.push(this)}),this.opts.element.val(0===i.length?"":i.join(this.opts.separator)))},buildChangeDetails:function(t,e){for(var e=e.slice(0),t=t.slice(0),i=0;i<e.length;i++)for(var n=0;n<t.length;n++)o(this.opts.id(e[i]),this.opts.id(t[n]))&&(e.splice(i,1),i>0&&i--,t.splice(n,1),n--);return{added:e,removed:t}},val:function(i,n){var r,a=this;if(0===arguments.length)return this.getVal();if(r=this.data(),r.length||(r=[]),!i&&0!==i)return this.opts.element.val(""),this.updateSelection([]),this.clearSearch(),void(n&&this.triggerChange({added:this.data(),removed:r}));if(this.setVal(i),this.select)this.opts.initSelection(this.select,this.bind(this.updateSelection)),n&&this.triggerChange(this.buildChangeDetails(r,this.data()));else{if(this.opts.initSelection===e)throw new Error("val() cannot be called if initSelection() is not defined");this.opts.initSelection(this.opts.element,function(e){var i=t.map(e,a.id);a.setVal(i),a.updateSelection(e),a.clearSearch(),n&&a.triggerChange(a.buildChangeDetails(r,a.data()))})}this.clearSearch()},onSortStart:function(){if(this.select)throw new Error("Sorting of elements is not supported when attached to <select>. Attach to <input type='hidden'/> instead.");this.search.width(0),this.searchContainer.hide()},onSortEnd:function(){var e=[],i=this;this.searchContainer.show(),this.searchContainer.appendTo(this.searchContainer.parent()),this.resizeSearch(),this.selection.find(".select2-search-choice").each(function(){e.push(i.opts.id(t(this).data("select2-data")))}),this.setVal(e),this.triggerChange()},data:function(e,i){var n,r,a=this;if(0===arguments.length)return this.selection.children(".select2-search-choice").map(function(){return t(this).data("select2-data")}).get();r=this.data(),e||(e=[]),n=t.map(e,function(t){return a.opts.id(t)}),this.setVal(n),this.updateSelection(e),this.clearSearch(),i&&this.triggerChange(this.buildChangeDetails(r,this.data()))}}),t.fn.select2=function(){var i,n,a,o,s,l=Array.prototype.slice.call(arguments,0),u=["val","destroy","opened","open","close","focus","isFocused","container","dropdown","onSortStart","onSortEnd","enable","disable","readonly","positionDropdown","data","search"],c=["opened","isFocused","container","dropdown"],h=["val","data"],d={search:"externalSearch"};return this.each(function(){if(0===l.length||"object"==typeof l[0])i=0===l.length?{}:t.extend({},l[0]),i.element=t(this),"select"===i.element.get(0).tagName.toLowerCase()?s=i.element.prop("multiple"):(s=i.multiple||!1,"tags"in i&&(i.multiple=s=!0)),n=s?new window.Select2.class.multi:new window.Select2.class.single,n.init(i);else{if("string"!=typeof l[0])throw"Invalid arguments to select2 plugin: "+l;if(r(l[0],u)<0)throw"Unknown method: 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ScrollTop: "+l+". Element offset: "+s+". 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function(e){return e.preventDefault(),t.next()}}(this)).on("click.tour-"+this._options.name,".popover.tour-"+this._options.name+" *[data-role='prev']",function(t){return function(e){return e.preventDefault(),t.prev()}}(this)).on("click.tour-"+this._options.name,".popover.tour-"+this._options.name+" *[data-role='end']",function(t){return function(e){return e.preventDefault(),t.end()}}(this)).on("click.tour-"+this._options.name,".popover.tour-"+this._options.name+" *[data-role='pause-resume']",function(i){var n;return i.preventDefault(),n=t(this),n.text(e._paused?n.data("pause-text"):n.data("resume-text")),e._paused?e.resume():e.pause()})},i.prototype._initKeyboardNavigation=function(){if(this._options.keyboard)return t(n).on("keyup.tour-"+this._options.name,function(t){return function(e){if(e.which)switch(e.which){case 39:return e.preventDefault(),t._isLast()?t.next():t.end();case 37:if(e.preventDefault(),t._current>0)return t.prev();break;case 27:return 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this.backdrop.overlayElementShown||(this.backdrop.$element=n.addClass("tour-step-backdrop"),this.backdrop.$background=t("<div>",{class:"tour-step-background"}),this.backdrop.$background.appendTo(e.backdropContainer),this.backdrop.overlayElementShown=!0),r={width:n.innerWidth(),height:n.innerHeight(),offset:n.offset()},e.backdropPadding&&(r=this._applyBackdropPadding(e.backdropPadding,r)),this.backdrop.$background.width(r.width).height(r.height).offset(r.offset)},i.prototype._hideOverlayElement=function(){if(this.backdrop.overlayElementShown)return this.backdrop.$element.removeClass("tour-step-backdrop"),this.backdrop.$background.remove(),this.backdrop.$element=null,this.backdrop.$background=null,this.backdrop.overlayElementShown=!1},i.prototype._applyBackdropPadding=function(t,e){return"object"==typeof 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i,n,r,a,o;if(n=t.split(e),1===n.length)return{};for(n=n[1].split("&"),r={},a=0,o=n.length;a<o;a++)i=n[a],i=i.split("="),r[i[0]]=i[1]||"";return r},i.prototype._equal=function(t,e){var i,n;if("[object Object]"==={}.toString.call(t)&&"[object Object]"==={}.toString.call(e)){for(i in t)if(n=t[i],e[i]!==n)return!1;for(i in e)if(n=e[i],t[i]!==n)return!1;return!0}return t===e},i}(),e.Tour=i}(t,window)}).call(e,i(0))},function(t,e){var i;i=function(){return this}();try{i=i||Function("return this")()||(0,eval)("this")}catch(t){"object"==typeof window&&(i=window)}t.exports=i},function(t,e,i){"use strict";(function(t){function n(t,e){o(t).find(".tag-name").each(function(){o(this).click(function(){var t=o(this).text(),i=t.split(":");return e(i[0],i[1]),!0})})}Object.defineProperty(e,"__esModule",{value:!0});var r=i(0),a=function(t){return t&&t.__esModule?t:{default:t}}(r),o=a.default;a.default.fn.autocomplete_tagging=function(e){function 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a=n.slice(n.length-1);a.after(i)}else c.prepend(i);var s=e.split(":");l.tags[s[0]]=s[1];var u=l.get_toggle_link_text_fn(l.tags);h.text(u);var d=o(this);return o.ajax({url:l.ajax_add_tag_url,data:{new_tag:e},error:function(){i.remove(),delete l.tags[s[0]];var t=l.get_toggle_link_text_fn(l.tags);h.text(t),alert("Add tag failed")},success:function(){d.data("autocompleter").cacheFlush()}}),!1}});var p=function(t,e,i,n,r){var a=n.split(":");return 1===a.length?a[0]:a[1]},g={selectFirst:!1,formatItem:p,autoFill:!1,highlight:!1};d.autocomplete_verheul(l.ajax_autocomplete_tag_url,g),u.find(".delete-tag-img").each(function(){i(o(this))}),n(o(this),l.tag_click_fn),f.click(function(){return o(this).hide(),c.click(),!1}),l.editable&&(c.bind("blur",function(e){t.size(l.tags)>0&&(f.show(),d.hide(),c.removeClass("active-tag-area"))}),c.click(function(t){var e=o(this).hasClass("active-tag-area");if(o(t.target).hasClass("delete-tag-img")&&!e)return!1;if(o(t.target).hasClass("tag-name")&&!e)return!1;o(this).addClass("active-tag-area"),f.hide(),d.show(),d.focus();var i=function(t){!function(t,e){t.attr("id");e!==t&&(t.blur(),o(window).unbind("click.tagging_blur"),o(this).addClass("tooltip"))}(c,o(t.target))};return o(window).bind("click.tagging_blur",i),!1})),l.use_toggle_link&&c.hide()},e.default=n}).call(e,i(1))},function(t,e,i){"use strict";function n(){h.hide()}function r(t,e,i,n,r){h.setContent({title:t,body:e,buttons:i,extra_buttons:n}),h.show({backdrop:!0},r)}function a(t,e,i,n,r){h.setContent({title:t,body:e,buttons:i,extra_buttons:n}),h.show({backdrop:!1},r)}function o(t){var e=t.width||"600",i=t.height||"400",r=t.scroll||"auto";u("#overlay-background").bind("click.overlay",function(){n(),u("#overlay-background").unbind("click.overlay")}),h.setContent({closeButton:!0,title:"&nbsp;",body:u("<div style='margin: -5px;'><iframe 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c=window.Tour,h="undefined"==typeof Galaxy?"/":Galaxy.root,d={storage:window.sessionStorage,onEnd:function(){sessionStorage.removeItem("activeGalaxyTour")},delay:150,orphan:!0},f=function(e){return t.each(e.steps,function(e){e.preclick&&(e.onShow=function(){t.each(e.preclick,function(t){n(t).click()})}),e.postclick&&(e.onHide=function(){t.each(e.postclick,function(t){n(t).click()})}),e.textinsert&&(e.onShown=function(){n(e.element).val(e.textinsert).trigger("change")})}),e},p=r.Model.extend({urlRoot:h+"api/tours"}),g=r.Collection.extend({url:h+"api/tours",model:p}),m=e.ToursView=r.View.extend({title:(0,u.default)("Tours"),initialize:function(){var t=this;this.setElement("<div/>"),this.model=new g,this.model.fetch({success:function(){t.render()},error:function(){console.error("Failed to fetch tours.")}})},render:function(){var e=t.template('<h2>Galaxy Tours</h2>\n<p>This page presents a list of interactive tours available on this Galaxy server.\nSelect any tour to get started (and remember, you can click \'End Tour\' at any time).</p>\n\n<div class="col-12 btn-group" role="group" aria-label="Tag selector">\n    <% _.each(tourtagorder, function(tag) { %>\n    <button class="btn btn-primary tag-selector-button" tag-selector-button="<%- tag %>">\n        <%- tag %>\n    </button>\n    <% }); %>\n</div>\n\n<% _.each(tourtagorder, function(tourtagkey) { %>\n<div tag="<%- tourtagkey %>" style="display: block;">\n    <% var tourtag = tourtags[tourtagkey]; %>\n    <h4>\n        <%- tourtag.name %>\n    </h4>\n    <ul class="list-group">\n    <% _.each(tourtag.tours, function(tour) { %>\n        <li class="list-group-item">\n            <a href="/tours/<%- tour.id %>" class="tourItem" data-tour.id=<%- tour.id %>>\n                <%- tour.name || tour.id %>\n            </a>\n             - <%- tour.attributes.description || "No description given." %>\n             <% _.each(tour.attributes.tags, function(tag) { %>\n                <span class="label label-primary sm-label-pad">\n                    <%- tag.charAt(0).toUpperCase() + tag.slice(1) %>\n                </span>\n             <% }); %>\n        </li>\n    <% }); %>\n    </ul>\n</div>\n<% }); %>'),i={};t.each(this.model.models,function(e){null===e.attributes.tags?(void 0===i.Untagged&&(i.Untagged={name:"Untagged",tours:[]}),i.Untagged.tours.push(e)):t.each(e.attributes.tags,function(t){t=t.charAt(0).toUpperCase()+t.slice(1),void 0===i[t]&&(i[t]={name:t,tours:[]}),i[t].tours.push(e)})});var r=Object.keys(i).sort();this.$el.html(e({tours:this.model.models,tourtags:i,tourtagorder:r})).on("click",".tourItem",function(t){t.preventDefault(),o(n(this).data("tour.id"))}).on("click",".tag-selector-button",function(t){var e=n(t.target),i="block",r=e.attr("tag-selector-button");e.toggleClass("btn-primary"),e.toggleClass("btn-secondary"),e.hasClass("btn-secondary")&&(i="none"),n("div[tag='"+r+"']").css({display:i})})}});e.default={ToursView:m,giveTourWithData:a,giveTourById:o,activeGalaxyTourRunner:s}}).call(e,i(1),i(0),i(2))},function(t,e,i){"use strict";(function(t,n,r){function a(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var o=i(5),s=a(o),l=i(77),u=a(l),c=t.View.extend({initialize:function(e){var i=this;this.data=[],this.data2=[],this.model=e&&e.model||new t.Model({id:s.default.uid(),cls:"ui-select",error_text:"No options available",empty_text:"Nothing 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t=this;this.$("input").on("change",function(){t.value(t._getValue()),t.trigger("change")}),this._changeValue(),this._changeWait()},_changeVisible:function(){this.$el[this.model.get("visible")?"show":"hide"]()},_changeWait:function(){this.model.get("wait")?0===this.length()&&(this._messageShow(this.model.get("wait_text"),"info"),this.$options.hide(),this.$menu.hide()):0===this.length()?(this._messageShow(this.model.get("error_text"),"danger"),this.$options.hide(),this.$menu.hide()):(this.$message.hide(),this.$options.css("display","inline-block"),this.$menu.show())},_changeValue:function(){this._setValue(this.model.get("value")),null!==this._getValue()||this.model.get("multiple")||this.model.get("optional")||this._setValue(this.first()),this.all_button&&this.all_button.value(n.isArray(this._getValue())?this._getValue().length:0,this.length())},value:function(t){return void 0!==t&&this.model.set("value",t),this._getValue()},first:function(){var t=this.$("input").first();return t.length>0?t.val():null},wait:function(){this.model.set("wait",!0)},unwait:function(){this.model.set("wait",!1)},length:function(){return this.$(".ui-option").length},_setValue:function(t){var e=this;if(void 0!==t&&(this.$("input").prop("checked",!1),null!==t)){var i=n.isArray(t)?t:[t];r.each(i,function(t){e.$('input[value="'+t+'"]').first().prop("checked",!0)})}},_getValue:function(){var t=[];return this.$(":checked").each(function(){t.push(n(this).val())}),s.default.isEmpty(t)?null:this.model.get("multiple")?t:t[0]},_messageShow:function(t,e){this.$message.show().removeClass().addClass("ui-message alert alert-"+e).html(t)},_template:function(){return n("<div/>").addClass("ui-options-list")}}),h=c.extend({_templateOption:function(t){var e=s.default.uid();return n("<div/>").addClass("ui-option").append(n("<input/>").attr({id:e,type:this.model.get("type"),name:this.model.id,value:t.value})).append(n("<label/>").addClass("ui-options-label").attr("for",e).html(t.label))}}),d={};d.View=h.extend({initialize:function(t){t.type="radio",h.prototype.initialize.call(this,t)}});var f={};f.View=h.extend({initialize:function(t){t.type="checkbox",t.multiple=!0,h.prototype.initialize.call(this,t)}});var p={};p.View=c.extend({initialize:function(t){c.prototype.initialize.call(this,t)},_setValue:function(t){void 0!==t&&(this.$("input").prop("checked",!1),this.$("label").removeClass("active"),this.$('[value="'+t+'"]').prop("checked",!0).closest("label").addClass("active"))},_templateOption:function(t){var e=n("<label/>").addClass("btn btn-default");return t.icon&&e.append(n("<i/>").addClass("fa").addClass(t.icon).addClass(!t.label&&"no-padding")),e.append(n("<input/>").attr({type:"radio",name:this.model.id,value:t.value})),t.label&&e.append(t.label),e},_template:function(){return n("<div/>").addClass("btn-group ui-radiobutton").attr("data-toggle","buttons")}}),e.default={Base:c,BaseIcons:h,Radio:d,RadioButton:p,Checkbox:f}}).call(e,i(2),i(0),i(1))},function(t,e,i){"use strict";(function(t,n){function r(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var a=i(3),o=r(a),s=i(1),l=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var i in t)Object.prototype.hasOwnProperty.call(t,i)&&(e[i]=t[i]);return e.default=t,e}(s),u=i(117),c=r(u),h=i(23),d=r(h),f=i(44),p=r(f),g=i(25),m=r(g),v=i(24),_=r(v),y=i(5),b=r(y);i(103),i(102),i(104),i(62),i(106),i(75),i(74),i(105),i(15);var w=null,x=null,C=function(){this.initialize&&this.initialize.apply(this,arguments)};C.extend=t.Model.extend;var k=C.extend({initialize:function(t){b.default.cssLoadFile("static/style/jquery.rating.css"),b.default.cssLoadFile("static/style/autocomplete_tagging.css"),b.default.cssLoadFile("static/style/jquery-ui/smoothness/jquery-ui.css"),b.default.cssLoadFile("static/style/library.css"),b.default.cssLoadFile("static/style/trackster.css"),this.baseURL=t},save_viz:function(){Galaxy.modal.show({title:"Saving...",body:"progress"});var t=[];n(".bookmark").each(function(){t.push({position:n(this).children(".position").text(),annotation:n(this).children(".annotation").text()})});var e=x.overview_drawable?x.overview_drawable.config.get_value("name"):null,i={view:x.to_dict(),viewport:{chrom:x.chrom,start:x.low,end:x.high,overview:e},bookmarks:t};return n.ajax({url:Galaxy.root+"visualization/save",type:"POST",dataType:"json",data:{id:x.vis_id,title:x.config.get_value("name"),dbkey:x.dbkey,type:"trackster",vis_json:JSON.stringify(i)}}).success(function(t){Galaxy.modal.hide(),x.vis_id=t.vis_id,x.has_changes=!1,window.history.pushState({},"",t.url+window.location.hash)}).error(function(){Galaxy.modal.show({title:(0,o.default)("Could Not Save"),body:"Could not save visualization. Please try again later.",buttons:{Cancel:function(){Galaxy.modal.hide()}}})})},createButtonMenu:function(){var t=this,e=p.default.create_icon_buttons_menu([{icon_class:"plus-button",title:(0,o.default)("Add tracks"),on_click:function(){d.default.select_datasets({dbkey:x.dbkey},function(t){l.each(t,function(t){x.add_drawable(c.default.object_from_template(t,x,x))})})}},{icon_class:"block--plus",title:(0,o.default)("Add group"),on_click:function(){x.add_drawable(new c.default.DrawableGroup(x,x,{name:"New 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d.default.TrackBrowserRouter(e),t.history.start()},init_keyboard_nav:function(t){n(document).keyup(function(e){if(!n(e.srcElement).is(":input"))switch(e.which){case 37:t.move_fraction(.25);break;case 38:Math.round(t.viewport_container.height()/15);t.viewport_container.scrollTop(t.viewport_container.scrollTop()-20);break;case 39:t.move_fraction(-.25);break;case 40:Math.round(t.viewport_container.height()/15);t.viewport_container.scrollTop(t.viewport_container.scrollTop()+20)}})},handle_unsaved_changes:function(t){if(t.has_changes){var e=this;Galaxy.modal.show({title:(0,o.default)("Close visualization"),body:"There are unsaved changes to your visualization which will be lost if you do not save them.",buttons:{Cancel:function(){Galaxy.modal.hide()},"Leave without Saving":function(){n(window).off("beforeunload"),window.location=Galaxy.root+"visualization"},Save:function(){n.when(e.save_viz()).then(function(){window.location=Galaxy.root+"visualization"})}}})}else window.location=Galaxy.root+"visualization"}}),S=t.View.extend({initialize:function(){w=new k(Galaxy.root),w.createButtonMenu(),w.buttonMenu.$el.attr("style","float: right"),n("#center .unified-panel-header-inner").append(w.buttonMenu.$el),n("#right .unified-panel-title").append("Bookmarks"),n("#right .unified-panel-icons").append("<a id='add-bookmark-button' class='icon-button menu-button plus-button' href='javascript:void(0);' title='Add bookmark'></a>"),n("#right-border").click(function(){x.resize_window()}),window.force_right_panel("hide"),window.galaxy_config.app.id?this.view_existing():m.default.get("dataset_id")?this.choose_existing_or_new():this.view_new()},choose_existing_or_new:function(){var t=this,e=m.default.get("dbkey"),i={},n={dbkey:e,dataset_id:m.default.get("dataset_id"),hda_ldda:m.default.get("hda_ldda"),gene_region:m.default.get("gene_region")};e&&(i["f-dbkey"]=e),Galaxy.modal.show({title:"View Data in a New or Saved Visualization?",body:"<p><ul style='list-style: disc inside none'>You can add this dataset as:<li>a new track to one of your existing, saved Trackster sessions if they share the genome build: <b>"+(e||"Not available.")+"</b></li><li>or create a new session with this dataset as the only track</li></ul></p>",buttons:{Cancel:function(){window.location=Galaxy.root+"visualizations/list"},"View in saved visualization":function(){t.view_in_saved(n)},"View in new visualization":function(){t.view_new()}}})},view_in_saved:function(t){var e=new _.default({url_base:Galaxy.root+"visualization/list_tracks",embedded:!0});Galaxy.modal.show({title:(0,o.default)("Add Data to Saved Visualization"),body:e.$el,buttons:{Cancel:function(){window.location=Galaxy.root+"visualizations/list"},"Add to visualization":function(){n(parent.document).find("input[name=id]:checked").each(function(){t.id=n(this).val(),window.location=Galaxy.root+"visualization/trackster?"+n.param(t)})}}})},view_existing:function(){var t=window.galaxy_config.app.viz_config;x=w.create_visualization({container:n("#center .unified-panel-body"),name:t.title,vis_id:t.vis_id,dbkey:t.dbkey},t.viewport,t.tracks,t.bookmarks,!0),this.init_editor()},view_new:function(){var t=this;n.ajax({url:Galaxy.root+"api/genomes?chrom_info=True",data:{},error:function(){alert("Couldn't create new browser.")},success:function(e){Galaxy.modal.show({title:(0,o.default)("New Visualization"),body:t.template_view_new(e),buttons:{Cancel:function(){window.location=Galaxy.root+"visualizations/list"},Create:function(){t.create_browser(n("#new-title").val(),n("#new-dbkey").val()),Galaxy.modal.hide()}}});var i=e.map(function(t){return t[1]});window.galaxy_config.app.default_dbkey&&l.contains(i,window.galaxy_config.app.default_dbkey)&&n("#new-dbkey").val(window.galaxy_config.app.default_dbkey),n("#new-title").focus(),n("select[name='dbkey']").select2(),n("#overlay").css("overflow","auto")}})},template_view_new:function(t){for(var e='<form id="new-browser-form" action="javascript:void(0);" method="post" onsubmit="return false;"><div class="form-row"><label for="new-title">Browser name:</label><div class="form-row-input"><input type="text" name="title" id="new-title" value="Unnamed"></input></div><div style="clear: both;"></div></div><div class="form-row"><label for="new-dbkey">Reference genome build (dbkey): </label><div class="form-row-input"><select name="dbkey" id="new-dbkey">',i=0;i<t.length;i++)e+='<option value="'+t[i][1]+'">'+t[i][0]+"</option>";return e+='</select></div><div style="clear: both;"></div></div><div class="form-row">Is the build not listed here? <a href="'+Galaxy.root+'custom_builds">Add a Custom Build</a></div></form>'},create_browser:function(t,e){n(document).trigger("convert_to_values"),x=w.create_visualization({container:n("#center .unified-panel-body"),name:t,dbkey:e},window.galaxy_config.app.gene_region),this.init_editor(),x.editor=!0},init_editor:function(){n("#center .unified-panel-title").text(x.config.get_value("name")+" ("+x.dbkey+")"),window.galaxy_config.app.add_dataset&&n.ajax({url:Galaxy.root+"api/datasets/"+window.galaxy_config.app.add_dataset,data:{hda_ldda:"hda",data_type:"track_config"},dataType:"json",success:function(t){x.add_drawable(c.default.object_from_template(t,x,x))}}),n("#add-bookmark-button").click(function(){var t=x.chrom+":"+x.low+"-"+x.high;return w.add_bookmark(t,"Bookmark description",!0)}),w.init_keyboard_nav(x),n(window).on("beforeunload",function(){if(x.has_changes)return"There are unsaved changes to your visualization that will be lost if you leave this page."})}});e.default={TracksterUI:k,GalaxyApp:S}}).call(e,i(2),i(0))},function(t,e,i){"use strict";(function(t,n){function r(t){return t&&t.__esModule?t:{default:t}}function a(t,e){e||(e=0);var i=Math.pow(10,e);return Math.round(t*i)/i}function o(e){var i=t.Deferred();return t.ajax({type:"HEAD",url:e,beforeSend:function(t){t.setRequestHeader("Range","bytes=0-10")},success:function(t,e,n){i.resolve(206===n.status)}}),i}Object.defineProperty(e,"__esModule",{value:!0});var s=i(3),l=r(s),u=i(1),c=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var i in t)Object.prototype.hasOwnProperty.call(t,i)&&(e[i]=t[i]);return e.default=t,e}(u),h=i(23),d=r(h),f=i(161),p=r(f),g=i(45),m=r(g),v=i(162),_=r(v),y=i(163),b=r(y),w=i(164),x=r(w),C=i(22),k=r(C),S=i(78),T=r(S),A=i(46),M=r(A),E=i(245),O=r(E);i(15);var $=c.extend,D={},j=function(t,e){D[t.attr("id")]=e},P=function(e,i,n,r){n=".group",D[e.attr("id")]=r,e.bind("drag",{handle:"."+i,relative:!0},function(e,i){var r,a,o,s,l,u=(t(this),t(this).parent()),c=u.children(".track,.group"),h=D[t(this).attr("id")];if(a=t(this).parents(n),0!==a.length){o=a.position().top,s=o+a.outerHeight();var d=D[a.attr("id")];if(i.offsetY<o)return t(this).insertBefore(a),d.remove_drawable(h),void d.container.add_drawable_before(h,d);if(i.offsetY>s)return t(this).insertAfter(a),d.remove_drawable(h),void d.container.add_drawable(h)}for(a=null,l=0;l<c.length;l++)if(r=t(c.get(l)),o=r.position().top,s=o+r.outerHeight(),r.is(n)&&this!==r.get(0)&&i.offsetY>=o&&i.offsetY<=s)return i.offsetY-o<s-i.offsetY?r.find(".content-div").prepend(this):r.find(".content-div").append(this),h.container&&h.container.remove_drawable(h),void D[r.attr("id")].add_drawable(h);for(l=0;l<c.length&&(r=t(c.get(l)),!(i.offsetY<r.position().top)||r.hasClass("reference-track")||r.hasClass("intro"));l++);l===c.length?this!==c.get(l-1)&&(u.append(this),D[u.attr("id")].move_drawable(h,l)):this!==c.get(l)&&(t(this).insertBefore(c.get(l)),D[u.attr("id")].move_drawable(h,i.deltaY>0?l-1:l))}).bind("dragstart",function(){t(this).addClass("dragging")}).bind("dragend",function(){t(this).removeClass("dragging")})},R="A converter for this dataset is not installed. Please check your datatypes_conf.xml file.",I=["Histogram","Line","Filled","Intensity"],N=function t(e,i,n){if(t.id_counter||(t.id_counter=0),this.id=t.id_counter++,this.view=e,this.container=i,this.drag_handle_class=n.drag_handle_class,this.is_overview=!1,this.action_icons={},this.config=M.default.ConfigSettingCollection.from_models_and_saved_values(this.config_params,n.prefs),this.config.get_value("name")||this.config.set_value("name",n.name),this.config_onchange&&this.config.on("change",this.config_onchange,this),this.container_div=this.build_container_div(),this.header_div=null,!1!==n.header){var r=new p.default.TrackHeaderView({model:this,id:this.id});this.header_div=r.$el,this.container_div.append(this.header_div);var a=r.icons_div;this.action_icons=r.action_icons,this.container_div.hover(function(){a.show()},function(){a.hide()})}};N.prototype.action_icons_def=[{name:"toggle_icon",title:"Hide/show content",css_class:"toggle",on_click_fn:function(t){t.config.get_value("content_visible")?(t.action_icons.toggle_icon.addClass("toggle-expand").removeClass("toggle"),t.hide_contents(),t.config.set_value("content_visible",!1)):(t.action_icons.toggle_icon.addClass("toggle").removeClass("toggle-expand"),t.config.set_value("content_visible",!0),t.show_contents())}},{name:"settings_icon",title:(0,l.default)("Edit settings"),css_class:"gear",on_click_fn:function(t){new M.default.ConfigSettingCollectionView({collection:t.config}).render_in_modal("Configure Track")}},{name:"remove_icon",title:(0,l.default)("Remove"),css_class:"remove-icon",on_click_fn:function(e){t(".tooltip").remove(),e.remove()}}],$(N.prototype,{config_params:[{key:"name",label:"Name",type:"text",default_value:""},{key:"content_visible",type:"bool",default_value:!0,hidden:!0}],config_onchange:function(){},init:function(){},changed:function(){this.view.changed()},can_draw:function(){return!(!this.enabled||!this.config.get_value("content_visible"))},request_draw:function(){},_draw:function(t){},to_dict:function(){},set_name:function(t){this.old_name=this.config.get_value("name"),this.config.set_value("name",t)},revert_name:function(){this.old_name&&this.config.set_value("name",this.old_name)},remove:function(){this.changed(),this.container.remove_drawable(this);var e=this.view;this.container_div.hide(0,function(){t(this).remove(),e.update_intro_div()})},build_container_div:function(){},update_icons:function(){},hide_contents:function(){},show_contents:function(){},get_drawables:function(){}});var L=function(t,e,i){N.call(this,t,e,i),this.obj_type=i.obj_type,this.drawables=[]};$(L.prototype,N.prototype,{unpack_drawables:function(t){this.drawables=[];for(var e,i=0;i<t.length;i++)e=at(t[i],this.view,this),this.add_drawable(e)},init:function(){for(var t=0;t<this.drawables.length;t++)this.drawables[t].init()},_draw:function(t){for(var e=0;e<this.drawables.length;e++)this.drawables[e]._draw(t)},to_dict:function(){for(var t=[],e=0;e<this.drawables.length;e++)t.push(this.drawables[e].to_dict());return{prefs:this.config.to_key_value_dict(),obj_type:this.obj_type,drawables:t}},add_drawable:function(t){this.drawables.push(t),t.container=this,this.changed()},add_drawable_before:function(t,e){this.changed();var i=this.drawables.indexOf(e);return-1!==i&&(this.drawables.splice(i,0,t),!0)},replace_drawable:function(t,e,i){var n=this.drawables.indexOf(t);return-1!==n&&(this.drawables[n]=e,i&&t.container_div.replaceWith(e.container_div),this.changed()),n},remove_drawable:function(t){var e=this.drawables.indexOf(t);return-1!==e&&(this.drawables.splice(e,1),t.container=null,this.changed(),!0)},move_drawable:function(t,e){var i=this.drawables.indexOf(t);return-1!==i&&(this.drawables.splice(i,1),this.drawables.splice(e,0,t),this.changed(),!0)},get_drawables:function(){return this.drawables},get_tracks:function(t){for(var e,i=this.drawables.slice(0),n=[];0!==i.length;)e=i.shift(),e instanceof t?n.push(e):e.drawables&&(i=i.concat(e.drawables));return n}});var z=function(e,i,n){if($(n,{obj_type:"DrawableGroup",drag_handle_class:"group-handle"}),L.call(this,e,i,n),this.content_div=t("<div/>").addClass("content-div").attr("id","group_"+this.id+"_content_div").appendTo(this.container_div),j(this.container_div,this),j(this.content_div,this),P(this.container_div,this.drag_handle_class,".group",this),this.filters_manager=new x.default.FiltersManager(this),this.header_div.after(this.filters_manager.parent_div),this.filters_manager.parent_div.after(t("<div style='clear: both'/>")),this.saved_filters_managers=[],"drawables"in n&&this.unpack_drawables(n.drawables),"filters"in n){var r=this.filters_manager;this.filters_manager=new x.default.FiltersManager(this,n.filters),r.parent_div.replaceWith(this.filters_manager.parent_div),n.filters.visible&&this.setup_multitrack_filtering()}};$(z.prototype,N.prototype,L.prototype,{action_icons_def:[N.prototype.action_icons_def[0],N.prototype.action_icons_def[1],{name:"composite_icon",title:(0,l.default)("Show composite track"),css_class:"layers-stack",on_click_fn:function(e){t(".tooltip").remove(),e.show_composite_track()}},{name:"filters_icon",title:(0,l.default)("Filters"),css_class:"ui-slider-050",on_click_fn:function(t){t.filters_manager.visible()?(t.filters_manager.clear_filters(),t._restore_filter_managers()):(t.setup_multitrack_filtering(),t.request_draw({clear_tile_cache:!0})),t.filters_manager.toggle()}},N.prototype.action_icons_def[2]],build_container_div:function(){var e=t("<div/>").addClass("group").attr("id","group_"+this.id);return this.container&&this.container.content_div.append(e),e},hide_contents:function(){this.tiles_div.hide()},show_contents:function(){this.tiles_div.show(),this.request_draw()},update_icons:function(){var e=this.drawables.length;if(0===e)this.action_icons.composite_icon.hide(),this.action_icons.filters_icon.hide();else if(1===e)this.action_icons.composite_icon.toggle(this.drawables[0]instanceof K),this.action_icons.filters_icon.hide();else{var i,n,r,a=this.drawables[0].get_type(),o=0;for(i=0;i<e;i++){if(r=this.drawables[i],r.get_type()!==a){can_composite=!1;break}r instanceof et&&o++}if(this.drawables[0]instanceof Z?this.action_icons.composite_icon.show():(this.action_icons.composite_icon.hide(),t(".tooltip").remove()),o>1&&o===this.drawables.length){var s,l={};for(r=this.drawables[0],n=0;n<r.filters_manager.filters.length;n++)s=r.filters_manager.filters[n],l[s.name]=[s];for(i=1;i<this.drawables.length;i++)for(r=this.drawables[i],n=0;n<r.filters_manager.filters.length;n++)s=r.filters_manager.filters[n],s.name in l&&l[s.name].push(s);this.filters_manager.remove_all();var u,c;for(var h in l)u=l[h],u.length===o&&(c=new x.default.NumberFilter({name:u[0].name,index:u[0].index}),this.filters_manager.add_filter(c));this.action_icons.filters_icon.toggle(this.filters_manager.filters.length>0)}else this.action_icons.filters_icon.hide()}},_restore_filter_managers:function(){for(var t=0;t<this.drawables.length;t++)this.drawables[t].filters_manager=this.saved_filters_managers[t];this.saved_filters_managers=[]},setup_multitrack_filtering:function(){if(this.filters_manager.filters.length>0){this.saved_filters_managers=[];for(var t=0;t<this.drawables.length;t++){var e=this.drawables[t];this.saved_filters_managers.push(e.filters_manager),e.filters_manager=this.filters_manager}}this.filters_manager.init_filters()},show_composite_track:function(){var t=new K(this.view,this.view,{name:this.config.get_value("name"),drawables:this.drawables});this.container.replace_drawable(this,t,!0);t.request_draw()},add_drawable:function(t){L.prototype.add_drawable.call(this,t),this.update_icons()},remove_drawable:function(t){L.prototype.remove_drawable.call(this,t),this.update_icons()},to_dict:function(){this.filters_manager.visible()&&this._restore_filter_managers();var t=$(L.prototype.to_dict.call(this),{filters:this.filters_manager.to_dict()});return this.filters_manager.visible()&&this.setup_multitrack_filtering(),t},request_draw:function(t){c.each(this.drawables,function(e){e.request_draw(t)})}});var H=n.View.extend({initialize:function(t){$(t,{obj_type:"View"}),L.call(this,"View",t.container,t),this.chrom=null,this.vis_id=t.vis_id,this.dbkey=t.dbkey,this.stand_alone=void 0===t.stand_alone||t.stand_alone,this.label_tracks=[],this.tracks_to_be_redrawn=[],this.max_low=0,this.max_high=0,this.zoom_factor=3,this.min_separation=30,this.has_changes=!1,this.load_chroms_deferred=null,this.render(),this.canvas_manager=new d.default.CanvasManager(this.container.get(0).ownerDocument),this.reset(),this.config=M.default.ConfigSettingCollection.from_models_and_saved_values([{key:"name",label:"Name",type:"text",default_value:""},{key:"a_color",label:"A Color",type:"color",default_value:"#FF0000"},{key:"c_color",label:"C Color",type:"color",default_value:"#00FF00"},{key:"g_color",label:"G Color",type:"color",default_value:"#0000FF"},{key:"t_color",label:"T Color",type:"color",default_value:"#FF00FF"},{key:"n_color",label:"N Color",type:"color",default_value:"#AAAAAA"}],{name:t.name})},render:function(){this.requested_redraw=!1;var e=this.container,i=this;this.top_container=t("<div/>").addClass("top-container").appendTo(e),this.browser_content_div=t("<div/>").addClass("content").appendTo(e),this.bottom_container=t("<div/>").addClass("bottom-container").appendTo(e),this.top_labeltrack=t("<div/>").addClass("top-labeltrack").appendTo(this.top_container),this.viewport_container=t("<div/>").addClass("viewport-container").attr("id","viewport-container").appendTo(this.browser_content_div),this.content_div=this.viewport_container,j(this.viewport_container,i),this.intro_div=t("<div/>").addClass("intro").appendTo(this.viewport_container);t("<div/>").text("Add Datasets to Visualization").addClass("action-button").appendTo(this.intro_div).click(function(){d.default.select_datasets({dbkey:i.dbkey},function(t){c.each(t,function(t){i.add_drawable(at(t,i,i))})})});this.nav_container=t("<div/>").addClass("trackster-nav-container").prependTo(this.top_container),this.nav=t("<div/>").addClass("trackster-nav").appendTo(this.nav_container),this.stand_alone&&(this.nav_container.addClass("stand-alone"),this.nav.addClass("stand-alone")),this.overview=t("<div/>").addClass("overview").appendTo(this.bottom_container),this.overview_viewport=t("<div/>").addClass("overview-viewport").appendTo(this.overview),this.overview_close=t("<a/>").attr("title","Close overview").addClass("icon-button overview-close tooltip").hide().appendTo(this.overview_viewport),this.overview_highlight=t("<div/>").addClass("overview-highlight").hide().appendTo(this.overview_viewport),this.overview_box_background=t("<div/>").addClass("overview-boxback").appendTo(this.overview_viewport),this.overview_box=t("<div/>").addClass("overview-box").appendTo(this.overview_viewport),this.default_overview_height=this.overview_box.height(),this.nav_controls=t("<div/>").addClass("nav-controls").appendTo(this.nav),this.chrom_select=t("<select/>").attr({name:"chrom"}).addClass("chrom-nav").append("<option value=''>Loading</option>").appendTo(this.nav_controls);var n=function(e){"focusout"!==e.type&&13!==(e.keyCode||e.which)&&27!==(e.keyCode||e.which)||(27!==(e.keyCode||e.which)&&i.go_to(t(this).val()),t(this).hide(),t(this).val(""),i.location_span.show(),i.chrom_select.show()),e.stopPropagation()};this.nav_input=t("<input/>").addClass("nav-input").hide().bind("keyup focusout",n).appendTo(this.nav_controls),this.location_span=t("<span/>").addClass("location").attr("title","Click to change location").tooltip({placement:"bottom"}).appendTo(this.nav_controls),this.location_span.click(function(){i.location_span.hide(),i.chrom_select.hide(),i.nav_input.val(i.chrom+":"+i.low+"-"+i.high),i.nav_input.css("display","inline-block"),i.nav_input.select(),i.nav_input.focus(),i.nav_input.autocomplete({source:function(e,n){var r=[],a=t.map(i.get_tracks(et),function(t){return t.data_manager.search_features(e.term).success(function(t){r=r.concat(t)})});t.when.apply(t,a).done(function(){n(t.map(r,function(t){return{label:t[0],value:t[1]}}))})},minLength:2})}),void 0!==this.vis_id&&(this.hidden_input=t("<input/>").attr("type","hidden").val(this.vis_id).appendTo(this.nav_controls)),this.zo_link=t("<a/>").attr("id","zoom-out").attr("title","Zoom out").tooltip({placement:"bottom"}).click(function(){i.zoom_out()}).appendTo(this.nav_controls),this.zi_link=t("<a/>").attr("id","zoom-in").attr("title","Zoom in").tooltip({placement:"bottom"}).click(function(){i.zoom_in()}).appendTo(this.nav_controls),this.load_chroms_deferred=this.load_chroms({low:0}),this.chrom_select.bind("change",function(){i.change_chrom(i.chrom_select.val())}),this.browser_content_div.click(function(e){t(this).find("input").trigger("blur")}),this.browser_content_div.bind("dblclick",function(t){i.zoom_in(t.pageX,this.viewport_container)}),this.overview_box.bind("dragstart",function(t,e){this.current_x=e.offsetX}).bind("drag",function(t,e){var n=e.offsetX-this.current_x;this.current_x=e.offsetX;var r=Math.round(n/i.viewport_container.width()*(i.max_high-i.max_low));i.move_delta(-r)}),this.overview_close.click(function(){i.reset_overview()}),this.viewport_container.bind("draginit",function(t,e){if(t.clientX>i.viewport_container.width()-16)return!1}).bind("dragstart",function(t,e){e.original_low=i.low,e.current_height=t.clientY,e.current_x=e.offsetX}).bind("drag",function(e,n){var r=t(this),a=n.offsetX-n.current_x,o=r.scrollTop()-(e.clientY-n.current_height);r.scrollTop(o),n.current_height=e.clientY,n.current_x=n.offsetX;var s=Math.round(a/i.viewport_container.width()*(i.high-i.low));i.move_delta(s)}),this.top_labeltrack.bind("dragstart",function(e,n){return t("<div/>").addClass("zoom-area").css("height",i.browser_content_div.height()+i.top_labeltrack.height()+1).appendTo(t(this))}).bind("drag",function(e,n){t(n.proxy).css({left:Math.min(e.pageX,n.startX)-i.container.offset().left,width:Math.abs(e.pageX-n.startX)});var r=Math.min(e.pageX,n.startX)-i.container.offset().left,a=Math.max(e.pageX,n.startX)-i.container.offset().left,o=i.high-i.low,s=i.viewport_container.width();i.update_location(Math.round(r/s*o)+i.low,Math.round(a/s*o)+i.low)}).bind("dragend",function(e,n){var r=Math.min(e.pageX,n.startX),a=Math.max(e.pageX,n.startX),o=i.high-i.low,s=i.viewport_container.width(),l=i.low;i.low=Math.round(r/s*o)+l,i.high=Math.round(a/s*o)+l,t(n.proxy).remove(),i.request_redraw()}),this.add_label_track(new J(this,{content_div:this.top_labeltrack})),t(window).bind("resize",function(){this.resize_timer&&clearTimeout(this.resize_timer),this.resize_timer=setTimeout(function(){i.resize_window()},500)}),t(document).bind("redraw",function(){i.redraw()}),this.reset(),t(window).trigger("resize")},get_base_color:function(t){return this.config.get_value(t.toLowerCase()+"_color")||this.config.get_value("n_color")}});$(H.prototype,L.prototype,{changed:function(){this.has_changes=!0},update_intro_div:function(){this.intro_div.toggle(0===this.drawables.length)},trigger_navigate:function(t,e,i,n){if(this.timer&&clearTimeout(this.timer),n){var r=this;this.timer=setTimeout(function(){r.trigger("navigate",t+":"+e+"-"+i)},500)}else view.trigger("navigate",t+":"+e+"-"+i)},update_location:function(t,e){this.location_span.text(m.default.commatize(t)+" - "+m.default.commatize(e)),this.nav_input.val(this.chrom+":"+m.default.commatize(t)+"-"+m.default.commatize(e));var i=this.chrom_select.val();""!==i&&this.trigger_navigate(i,this.low,this.high,!0)},load_chroms:function(e){e.num=100;var i=this,n=t.Deferred();return t.ajax({url:Galaxy.root+"api/genomes/"+this.dbkey,data:e,dataType:"json",success:function(e){if(0!==e.chrom_info.length){if(e.reference){var r=new Q(i);i.add_label_track(r),i.reference_track=r}i.chrom_data=e.chrom_info,i.chrom_select.html(""),i.chrom_select.append(t('<option value="">Select Chrom/Contig</option>'));for(var a=0,o=i.chrom_data.length;a<o;a++){var s=i.chrom_data[a].chrom,l=t("<option>");l.text(s),l.val(s),i.chrom_select.append(l)}e.prev_chroms&&i.chrom_select.append(t('<option value="previous">Previous 100</option>')),e.next_chroms&&i.chrom_select.append(t('<option value="next">Next 100</option>')),i.chrom_start_index=e.start_index,n.resolve(e.chrom_info)}},error:function(){alert("Could not load chroms for this dbkey: "+i.dbkey)}}),n},change_chrom:function(e,i,n){var r=this;if(!r.chrom_data)return void r.load_chroms_deferred.then(function(){r.change_chrom(e,i,n)});if(e&&"None"!==e){if("previous"===e)return void r.load_chroms({low:this.chrom_start_index-100});if("next"===e)return void r.load_chroms({low:this.chrom_start_index+100});var a=t.grep(r.chrom_data,function(t,i){return t.chrom===e})[0];if(void 0===a)return void r.load_chroms({chrom:e},function(){r.change_chrom(e,i,n)});if(e!==r.chrom){r.chrom=e,r.chrom_select.val(r.chrom),r.max_high=a.len-1,r.reset();for(var o=0,s=r.drawables.length;o<s;o++){var l=r.drawables[o];l.init&&l.init()}r.reference_track&&r.reference_track.init()}void 0===i&&void 0===n?(r.low=0,r.high=r.max_high):(r.low=void 0!==i?Math.max(i,0):0,void 0===n?(r.low=Math.max(r.low-15,0),r.high=r.low+30):r.high=Math.min(n,r.max_high)),r.request_redraw()}},go_to:function(t){t=t.replace(/,/g,""),t=t.replace(/:|\-/g," ");var e=t.split(/\s+/),i=e[0],n=e[1]?parseInt(e[1],10):void 0,r=e[2]?parseInt(e[2],10):void 0;this.change_chrom(i,n,r)},move_fraction:function(t){var e=this,i=e.high-e.low;this.move_delta(t*i)},move_delta:function(t){var e=this,i=e.high-e.low;e.low-t<e.max_low?(e.low=e.max_low,e.high=e.max_low+i):e.high-t>e.max_high?(e.high=e.max_high,e.low=e.max_high-i):(e.high-=t,e.low-=t),e.request_redraw({data_fetch:!1}),this.redraw_on_move_fn&&clearTimeout(this.redraw_on_move_fn),this.redraw_on_move_fn=setTimeout(function(){e.request_redraw()},200);var n=e.chrom_select.val();this.trigger_navigate(n,e.low,e.high,!0)},add_drawable:function(t){L.prototype.add_drawable.call(this,t),t.init(),this.changed(),this.update_intro_div();var e=this;t.config.on("change",function(){e.changed()})},add_label_track:function(t){t.view=this,t.init(),this.label_tracks.push(t)},remove_drawable:function(e,i){if(L.prototype.remove_drawable.call(this,e),i){var n=this;e.container_div.hide(0,function(){t(this).remove(),n.update_intro_div()})}},reset:function(){this.low=this.max_low,this.high=this.max_high,this.viewport_container.find(".yaxislabel").remove()},request_redraw:function(t,e){var i=this,n=e?[e]:i.drawables;c.each(n,function(e){var n=c.find(i.tracks_to_be_redrawn,function(t){return t[0]===e});n?n[1]=t:i.tracks_to_be_redrawn.push([e,t])}),this.requested_redraw||(requestAnimationFrame(function(){i._redraw()}),this.requested_redraw=!0)},_redraw:function(){this.requested_redraw=!1;var t=this.low,e=this.high;t<this.max_low&&(t=this.max_low),e>this.max_high&&(e=this.max_high);var i=this.high-this.low;0!==this.high&&i<this.min_separation&&(e=t+this.min_separation),this.low=Math.floor(t),this.high=Math.ceil(e),this.update_location(this.low,this.high),this.resolution_px_b=this.viewport_container.width()/(this.high-this.low);var n=this.low/(this.max_high-this.max_low)*this.overview_viewport.width()||0,r=(this.high-this.low)/(this.max_high-this.max_low)*this.overview_viewport.width()||0;this.overview_box.css({left:n,width:Math.max(13,r)}).show(),r<13&&this.overview_box.css("left",n-(13-r)/2),this.overview_highlight&&this.overview_highlight.css({left:n,width:r}),c.each(this.tracks_to_be_redrawn,function(t){var e=t[0],i=t[1];e&&e._draw(i)}),this.tracks_to_be_redrawn=[],c.each(this.label_tracks,function(t){t._draw()})},zoom_in:function(t,e){if(!(0===this.max_high||this.high-this.low<=this.min_separation)){var i=this.high-this.low,n=i/2+this.low,r=i/this.zoom_factor/2;t&&(n=t/this.viewport_container.width()*(this.high-this.low)+this.low),this.low=Math.round(n-r),this.high=Math.round(n+r),this.changed(),this.request_redraw()}},zoom_out:function(){if(0!==this.max_high){var t=this.high-this.low,e=t/2+this.low,i=t*this.zoom_factor/2;this.low=Math.round(e-i),this.high=Math.round(e+i),this.changed(),this.request_redraw()}},resize_viewport:function(){this.viewport_container.height(this.container.height()-this.top_container.height()-this.bottom_container.height())},resize_window:function(){this.resize_viewport(),this.request_redraw()},set_overview:function(t){if(this.overview_drawable){if(this.overview_drawable.dataset.id===t.dataset.id)return;this.overview_viewport.find(".track").remove()}var e=t.copy({content_div:this.overview_viewport}),i=this;e.header_div.hide(),e.is_overview=!0,i.overview_drawable=e,this.overview_drawable.postdraw_actions=function(){i.overview_highlight.show().height(i.overview_drawable.content_div.height()),i.overview_viewport.height(i.overview_drawable.content_div.height()+i.overview_box.outerHeight()),i.overview_close.show(),i.resize_window()},i.overview_drawable.request_draw(),this.changed()},reset_overview:function(){t(".tooltip").remove(),this.overview_viewport.find(".track-tile").remove(),this.overview_viewport.height(this.default_overview_height),this.overview_box.height(this.default_overview_height),this.overview_close.hide(),this.overview_highlight.hide(),view.resize_window(),view.overview_drawable=null}});var q=T.default.Tool.extend({defaults:{track:null},initialize:function(t){T.default.Tool.prototype.initialize.call(this,t);var e=!0;void 0!==t.tool_state&&void 0!==t.tool_state.hidden&&(e=t.tool_state.hidden),this.set("hidden",e),this.remove_inputs(["data","hidden_data","conditional"])},state_dict:function(t){return c.extend(this.get_inputs_dict(),{hidden:!this.is_visible()})}}),F=n.View.extend({events:{"change :input":"update_value"},render:function(){var e=this.$el.addClass("param-row"),i=this.model;t("<div>").addClass("param-label").text(i.get("label")).appendTo(e);t("<div/>").addClass("param-input").html(i.get("html")).appendTo(e).find(":input").val(i.get("value")),t("<div style='clear: both;'/>").appendTo(e)},update_value:function(e){this.model.set_value(t(e.target).val())}}),B=n.View.extend({initialize:function(t){this.model.on("change:hidden",this.set_visible,this)},render:function(){var e=this,i=this.model,n=this.$el.addClass("dynamic-tool").hide();n.bind("drag",function(t){t.stopPropagation()}).click(function(t){t.stopPropagation()}).bind("dblclick",function(t){t.stopPropagation()}).keydown(function(t){t.stopPropagation()});t("<div class='tool-name'>").appendTo(n).text(i.get("name"));i.get("inputs").each(function(t){var e=new F({model:t});e.render(),n.append(e.$el)}),n.find("input").click(function(){t(this).select()});var r=t("<div>").addClass("param-row").appendTo(n),a=t("<input type='submit'>").attr("value","Run on complete dataset").appendTo(r);t("<input type='submit'>").attr("value","Run on visible region").appendTo(r).click(function(){e.run_on_region()}),a.click(function(){e.run_on_dataset()}),i.is_visible()&&this.$el.show()},set_visible:function(){this.$el.toggle(this.model.is_visible())},update_params:function(){for(var t=0;t<this.params.length;t++)this.params[t].update_value()},run_on_dataset:function(){var t=this.model;this.run({target_dataset_id:this.model.get("track").dataset.id,action:"rerun",tool_id:t.id},null,function(e){Galaxy.modal.show({title:t.get("name")+" is Running",body:t.get("name")+" is running on the complete dataset. Tool outputs are in dataset's history.",buttons:{Close:function(){Galaxy.modal.hide()}}})})},run_on_region:function(){var t,e=this.model.get("track"),i=this.model,n=new d.default.GenomeRegion({chrom:e.view.chrom,start:e.view.low,end:e.view.high}),r={target_dataset_id:e.dataset.id,action:"rerun",tool_id:i.id,regions:[n.toJSON()]},a=e,o=i.get("name")+a.tool_region_and_parameters_str(n);if(a.container===view){var s=new z(view,view,{name:e.config.get_value("name")}),l=a.container.replace_drawable(a,s,!1);s.container_div.insertBefore(a.view.content_div.children()[l]),s.add_drawable(a),a.container_div.appendTo(s.content_div),t=s}else t=a.container;var u=new a.constructor(view,t,{name:o,hda_ldda:"hda"});u.init_for_tool_data(),u.change_mode(a.mode),u.set_filters_manager(a.filters_manager.copy(u)),u.update_icons(),t.add_drawable(u),u.tiles_div.text("Starting job."),this.run(r,u,function(t){u.set_dataset(new k.default.Dataset(t)),u.tiles_div.text("Running job."),u.init()})},run:function(e,i,n){e.inputs=this.model.get_inputs_dict();var r=new m.default.ServerStateDeferred({ajax_settings:{url:Galaxy.root+"api/tools",data:JSON.stringify(e),dataType:"json",contentType:"application/json",type:"POST"},interval:2e3,success_fn:function(t){return"pending"!==t}});t.when(r.go()).then(function(t){"no converter"===t?(i.container_div.addClass("error"),i.content_div.text(R)):t.error?(i.container_div.addClass("error"),i.content_div.text("Tool cannot be rerun: "+t.message)):n(t)})}}),V=function(t,e){b.default.Scaler.call(this,e),this.filter=t};V.prototype.gen_val=function(t){return this.filter.high===Number.MAX_VALUE||this.filter.low===-Number.MAX_VALUE||this.filter.low===this.filter.high?this.default_val:(parseFloat(t[this.filter.index])-this.filter.low)/(this.filter.high-this.filter.low)};var U=function(e,i,n,r,a){this.track=e,this.region=i,this.low=i.get("start"),this.high=i.get("end"),this.w_scale=n,this.canvas=r,this.html_elt=t("<div class='track-tile'/>").append(r),this.data=a,this.stale=!1};U.prototype.predisplay_actions=function(){};var W=function(t,e,i,n,r){U.call(this,t,e,i,n,r)};W.prototype.predisplay_actions=function(){};var G=function(t,e,i,n,r,a,o,s,l,u,c){U.call(this,t,e,i,n,r),this.mode=a,this.all_slotted=s,this.feature_mapper=l,this.has_icons=!1,this.incomplete_features=u,this.other_tiles_features_drawn={},this.seq_data=c};$(G.prototype,U.prototype),G.prototype.predisplay_actions=function(){};var X=function(e,i,r){$(r,{drag_handle_class:"draghandle"}),N.call(this,e,i,r),this.dataset=null,r.dataset&&(this.dataset=r.dataset instanceof n.Model?r.dataset:new k.default.Dataset(r.dataset)),this.dataset_check_type="converted_datasets_state",this.data_url_extra_params={},this.data_query_wait="data_query_wait"in r?r.data_query_wait:5e3,this.data_manager="data_manager"in r?r.data_manager:new d.default.GenomeDataManager({dataset:this.dataset,genome:new d.default.Genome({key:e.dbkey,chroms_info:{chrom_info:e.chrom_data}}),data_mode_compatible:this.data_and_mode_compatible,can_subset:this.can_subset}),this.min_height_px=16,this.max_height_px=800,this.visible_height_px=this.config.get_value("height"),this.content_div=t("<div class='track-content'>").appendTo(this.container_div),this.container&&(this.container.content_div.append(this.container_div),"resize"in r&&!r.resize||this.add_resize_handle())};$(X.prototype,N.prototype,{action_icons_def:[{name:"mode_icon",title:(0,l.default)("Set display mode"),css_class:"chevron-expand",on_click_fn:function(){}},N.prototype.action_icons_def[0],{name:"overview_icon",title:(0,l.default)("Set as overview"),css_class:"application-dock-270",on_click_fn:function(t){t.view.set_overview(t)}},N.prototype.action_icons_def[1],{name:"filters_icon",title:(0,l.default)("Filters"),css_class:"ui-slider-050",on_click_fn:function(t){t.filters_manager.visible()?t.filters_manager.clear_filters():t.filters_manager.init_filters(),t.filters_manager.toggle()}},{name:"tools_icon",title:(0,l.default)("Tool"),css_class:"hammer",on_click_fn:function(e){e.tool.toggle(),e.tool.is_visible()?e.set_name(e.config.get_value("name")+e.tool_region_and_parameters_str()):e.revert_name(),t(".tooltip").remove()}},{name:"param_space_viz_icon",title:(0,l.default)("Tool parameter space visualization"),css_class:"arrow-split",on_click_fn:function(e){var i="<strong>Tool</strong>:"+e.tool.get("name")+"<br/><strong>Dataset</strong>:"+e.config.get_value("name")+'<br/><strong>Region(s)</strong>: <select name="regions"><option value="cur">current viewing area</option><option value="bookmarks">bookmarks</option><option value="both">current viewing area and bookmarks</option></select>',r=function(){Galaxy.modal.hide(),t(window).unbind("keypress.check_enter_esc")},a=function(){var i,r=t('select[name="regions"] option:selected').val(),a=new d.default.GenomeRegion({chrom:view.chrom,start:view.low,end:view.high}),o=c.map(t(".bookmark"),function(e){return new d.default.GenomeRegion({from_str:t(e).children(".position").text()})});i="cur"===r?[a]:"bookmarks"===r?o:[a].concat(o),Galaxy.modal.hide(),window.location.href=Galaxy.root+"visualization/sweepster?"+t.param({dataset_id:e.dataset.id,hda_ldda:e.dataset.get("hda_ldda"),regions:JSON.stringify(new n.Collection(i).toJSON())})};Galaxy.modal.show({title:"Visualize tool parameter space and output from different parameter settings?",body:i,buttons:{No:r,Yes:a}})}},N.prototype.action_icons_def[2]],can_draw:function(){return this.dataset&&N.prototype.can_draw.call(this)},build_container_div:function(){return t("<div/>").addClass("track").attr("id","track_"+this.id)},set_dataset:function(t){this.dataset=t,this.data_manager.set("dataset",t)},on_resize:function(){this.request_draw({clear_tile_cache:!0})},add_resize_handle:function(){var e=this,i=!1,n=!1,r=t("<div class='track-resize'>");t(e.container_div).hover(function(){e.config.get_value("content_visible")&&(i=!0,r.show())},function(){i=!1,n||r.hide()}),r.hide().bind("dragstart",function(i,r){n=!0,r.original_height=t(e.content_div).height()}).bind("drag",function(i,n){var r=Math.min(Math.max(n.original_height+n.deltaY,e.min_height_px),e.max_height_px);t(e.tiles_div).css("height",r),e.visible_height_px=e.max_height_px===r?0:r,e.on_resize()}).bind("dragend",function(t,a){e.tile_cache.clear(),n=!1,i||r.hide(),e.config.set_value("height",e.visible_height_px),e.changed()}).appendTo(e.container_div)},hide_contents:function(){this.tiles_div.hide(),this.container_div.find(".yaxislabel, .track-resize").hide()},show_contents:function(){this.tiles_div.show(),this.container_div.find(".yaxislabel, .track-resize").show(),this.request_draw()},get_type:function(){return this instanceof J?"LabelTrack":this instanceof Q?"ReferenceTrack":this instanceof Z?"LineTrack":this instanceof nt?"ReadTrack":this instanceof it?"VariantTrack":this instanceof K?"CompositeTrack":this instanceof et?"FeatureTrack":""},show_message:function(e){return this.tiles_div.remove(),t("<span/>").addClass("message").html(e).appendTo(this.content_div)},init:function(e){var i=this;if(i.enabled=!1,i.tile_cache.clear(),i.data_manager.clear(),i.content_div.children().remove(),i.container_div.removeClass("nodata error pending"),i.tiles_div=t("<div/>").addClass("tiles").appendTo(i.content_div),i.dataset.id){var n=t.Deferred(),r={hda_ldda:i.dataset.get("hda_ldda"),data_type:this.dataset_check_type,chrom:i.view.chrom,retry:e};return t.getJSON(this.dataset.url(),r,function(e){if(e&&"error"!==e&&"error"!==e.kind)"no converter"===e?(i.container_div.addClass("error"),i.show_message(R)):"no data"===e||void 0!==e.data&&(null===e.data||0===e.data.length)?(i.container_div.addClass("nodata"),i.show_message("No data for this chrom/contig.")):"pending"===e?(i.container_div.addClass("pending"),i.show_message("Preparing data. This can take a while for a large dataset. If the visualization is saved and closed, preparation will continue in the background."),setTimeout(function(){i.init()},i.data_query_wait)):"data"!==e&&"data"!==e.status||(e.valid_chroms&&(i.valid_chroms=e.valid_chroms,i.update_icons()),i.tiles_div.text("Ready for display"),i.view.chrom?(i.tiles_div.text(""),i.tiles_div.css("height",i.visible_height_px+"px"),i.enabled=!0,t.when.apply(t,i.predraw_init()).done(function(){n.resolve(),i.container_div.removeClass("nodata error pending"),i.request_draw()})):n.resolve());else{i.container_div.addClass("error");var r=i.show_message("Cannot display dataset due to an error. ");e.message&&(r.append(t("<a href='javascript:void(0);'></a>").text("View error").click(function(){Galaxy.modal.show({title:(0,l.default)("Trackster Error"),body:"<pre>"+e.message+"</pre>",buttons:{Close:function(){Galaxy.modal.hide()}}})})),r.append(t("<span/>").text(" ")),r.append(t("<a href='javascript:void(0);'></a>").text("Try again").click(function(){i.init(!0)})))}}),this.update_icons(),n}},predraw_init:function(){var e=this;return t.getJSON(e.dataset.url(),{data_type:"data",stats:!0,chrom:e.view.chrom,low:0,high:e.view.max_high,hda_ldda:e.dataset.get("hda_ldda")},function(t){var i=t.data;if(i&&void 0!==i.min&&void 0!==i.max){var n=i.min,r=i.max;n=Math.floor(Math.min(0,Math.max(n,i.mean-2*i.sd))),r=Math.ceil(Math.max(0,Math.min(r,i.mean+2*i.sd))),e.config.set_default_value("min_value",n),e.config.set_default_value("max_value",r),e.config.set_value("min_value",n),e.config.set_value("max_value",r)}})},get_drawables:function(){return this}});var Y=function(e,i,n){X.call(this,e,i,n);var r=this;if(P(r.container_div,r.drag_handle_class,".group",r),this.filters_manager=new x.default.FiltersManager(this,"filters"in n?n.filters:null),this.data_manager.set("filters_manager",this.filters_manager),this.filters_available=!1,this.tool=n.tool?new q(c.extend(n.tool,{track:this,tool_state:n.tool_state})):null,this.tile_cache=new d.default.Cache(10),this.left_offset=0,this.header_div&&(this.set_filters_manager(this.filters_manager),this.tool)){var a=new B({model:this.tool});a.render(),this.dynamic_tool_div=a.$el,this.header_div.after(this.dynamic_tool_div)}this.tiles_div=t("<div/>").addClass("tiles").appendTo(this.content_div),this.config.get_value("content_visible")||this.tiles_div.hide(),this.overlay_div=t("<div/>").addClass("overlay").appendTo(this.content_div),n.mode&&this.change_mode(n.mode)};$(Y.prototype,N.prototype,X.prototype,{action_icons_def:X.prototype.action_icons_def.concat([{name:"show_more_rows_icon",title:"To minimize track height, not all feature rows are displayed. Click to display more rows.",css_class:"exclamation",on_click_fn:function(e){t(".tooltip").remove(),e.slotters[e.view.resolution_px_b].max_rows*=2,e.request_draw({clear_tile_cache:!0})},hide:!0}]),copy:function(t){var e=this.to_dict();$(e,{data_manager:this.data_manager});var i=new this.constructor(this.view,t,e);return i.change_mode(this.mode),i.enabled=this.enabled,i},set_filters_manager:function(t){this.filters_manager=t,this.header_div.after(this.filters_manager.parent_div)},to_dict:function(){return{track_type:this.get_type(),dataset:{id:this.dataset.id,hda_ldda:this.dataset.get("hda_ldda")},prefs:this.config.to_key_value_dict(),mode:this.mode,filters:this.filters_manager.to_dict(),tool_state:this.tool?this.tool.state_dict():{}}},set_min_max:function(){var e=this;return t.getJSON(e.dataset.url(),{data_type:"data",stats:!0,chrom:e.view.chrom,low:0,high:e.view.max_high,hda_ldda:e.dataset.get("hda_ldda")},function(t){var i=t.data;if(isNaN(parseFloat(e.config.get_value("min_value")))||isNaN(parseFloat(e.config.get_value("max_value")))){var n=i.min,r=i.max;n=Math.floor(Math.min(0,Math.max(n,i.mean-2*i.sd))),r=Math.ceil(Math.max(0,Math.min(r,i.mean+2*i.sd))),e.config.set_value("min_value",n),e.config.set_value("max_value",r)}})},change_mode:function(t){var e=this;return e.mode=t,e.config.set_value("mode",t),"Auto"===t&&this.data_manager.clear(),e.request_draw({clear_tile_cache:!0}),this.action_icons.mode_icon.attr("title","Set display mode (now: "+e.mode+")"),e},update_icons:function(){var t=this;t.action_icons.filters_icon.toggle(t.filters_available),t.action_icons.tools_icon.toggle(null!==t.tool),t.action_icons.param_space_viz_icon.toggle(null!==t.tool)},_gen_tile_cache_key:function(t,e){return t+"_"+e},request_draw:function(t){t&&t.clear_tile_cache&&this.tile_cache.clear(),this.view.request_redraw(t,this)},before_draw:function(){this.max_height_px=0},_draw:function(e){if(this.can_draw()){var i=e&&e.clear_after,n=this.view.low,r=this.view.high,a=this.view.container.width(),o=this.view.resolution_px_b,s=1/o;this.is_overview&&(n=this.view.max_low,r=this.view.max_high,o=a/(view.max_high-view.max_low),s=1/o),this.before_draw(),this.tiles_div.children().addClass("remove");for(var l,u,h=Math.floor(400*s),f=Math.floor(n/h),p=[],g=[];f*h<r;)l=new d.default.GenomeRegion({chrom:this.view.chrom,start:f*h,end:Math.min((f+1)*h,this.view.max_high)}),u=this.draw_helper(l,o,e),p.push(u),t.when(u).then(function(t){g.push(t)}),f+=1;i||this.tiles_div.children(".remove").removeClass("remove").remove();var m=this;t.when.apply(t,p).then(function(){m.tiles_div.children(".remove").remove(),g=c.filter(g,function(t){return null!==t}),0!==g.length&&m.postdraw_actions(g,a,o,i)})}},_add_yaxis_label:function(e,i){var n=this,r="max"===e?"top":"bottom",o="max"===e?"max":"min",s="max"===e?"max_value":"min_value",l=this.container_div.find(".yaxislabel."+r),u=a(n.config.get_value(s),1);i=i||function(){n.request_draw({clear_tile_cache:!0})},0!==l.length?l.text(u):(l=t("<div/>").text(u).make_text_editable({num_cols:12,on_finish:function(e){t(".tooltip").remove(),n.config.set_value(s,a(e,1)),i()},help_text:"Set "+o+" value"}).addClass("yaxislabel "+r).css("color",this.config.get_value("label_color")),this.container_div.prepend(l))},postdraw_actions:function(t,e,i,n){if(c.filter(t,function(t){return t instanceof W}).length>0){this.max_height_px=0;var r=this;c.each(t,function(t){t instanceof W||(t.html_elt.remove(),r.draw_helper(t.region,i,{force:!0,mode:"Coverage"}))}),r._add_yaxis_label("max")}else this.container_div.find(".yaxislabel").remove(),c.find(t,function(t){return t.has_icons})&&c.each(t,function(t){t.has_icons||t.html_elt.css("padding-top",20)})},get_mode:function(t){return this.mode},update_auto_mode:function(t){},_get_drawables:function(){return[this]},draw_helper:function(e,i,n){n||(n={});var r=n.force,a=n.mode||this.mode,o=1/i,s=this,l=this._get_drawables(),u=this._gen_tile_cache_key(i,e),h=r?void 0:s.tile_cache.get_elt(u);if(h)return function(t){return t&&"track"in t}(h)&&s.show_tile(h,i),h;if(!1===n.data_fetch)return null;var d=function(){var t=c.find(I,function(t){return t===a})?"Coverage":a,i=c.map(l,function(i){return i.data_manager.get_data(e,t,o,s.data_url_extra_params)});return view.reference_track&&i.push(view.reference_track.data_manager.get_data(e,a,o,view.reference_track.data_url_extra_params)),i},f=t.Deferred();return s.tile_cache.set_elt(u,f),t.when.apply(t,d()).then(function(){var r,a=d(),o=a;if(c.find(a,function(t){return m.default.is_deferred(t)}))return s.tile_cache.set_elt(u,void 0),void t.when(s.draw_helper(e,i,n)).then(function(t){f.resolve(t)});view.reference_track&&(r=view.reference_track.data_manager.subset_entry(a.pop(),e));var h=[],p=[];c.each(l,function(t,e){var n=t.mode,r=o[e];"Auto"===n&&(n=t.get_mode(r),t.update_auto_mode(n)),h.push(n),p.push(t.get_canvas_height(r,n,i,b))});var g,v=s.view.canvas_manager.new_canvas(),_=e.get("start"),y=e.get("end"),b=Math.ceil((y-_)*i)+s.left_offset,w=c.max(p);v.width=b,v.height=n.height||w;var x=v.getContext("2d");x.translate(s.left_offset,0),l.length>1&&(x.globalAlpha=.5,x.globalCompositeOperation="source-over"),c.each(l,function(t,n){g=t.draw_tile(o[n],x,h[n],e,i,r)}),void 0!==g&&(s.tile_cache.set_elt(u,g),s.show_tile(g,i)),f.resolve(g)}),f},get_canvas_height:function(t,e,i,n){return this.visible_height_px},_draw_line_track_tile:function(t,e,i,n,r){-1!==[void 0,null].indexOf(this.config.get_value("min_value"))&&this.config.set_value("min_value",0),-1!==[void 0,null,0].indexOf(this.config.get_value("max_value"))&&this.config.set_value("max_value",c.max(c.map(t.data,function(t){return t[1]}))||0);var a=e.canvas;return new b.default.LinePainter(t.data,n.get("start"),n.get("end"),this.config.to_key_value_dict(),i).draw(e,a.width,a.height,r),new W(this,n,r,a,t.data)},draw_tile:function(t,e,i,n,r,a){},show_tile:function(t,e){var i=t.html_elt;t.predisplay_actions();var n=Math.round((t.low-(this.is_overview?this.view.max_low:this.view.low))*e);this.left_offset&&(n-=this.left_offset),i.css("left",n),i.hasClass("remove")?i.removeClass("remove"):this.tiles_div.append(i),i.css("height","auto"),this.max_height_px=Math.max(this.max_height_px,i.height()-2),i.parent().children().css("height",this.max_height_px+"px");var r=this.max_height_px;0!==this.visible_height_px&&(r=Math.min(this.max_height_px,this.visible_height_px)),this.tiles_div.css("height",r+"px")},tool_region_and_parameters_str:function(t){var e=this;return" - region=["+(void 0!==t?t.toString():"all")+"], parameters=["+c.values(e.tool.get_inputs_dict()).join(", ")+"]"},data_and_mode_compatible:function(t,e){return"Auto"===e||("Coverage"===e?"bigwig"===t.dataset_type:"bigwig"!==t.dataset_type&&"no_detail"!==t.extra_info)},can_subset:function(t){return!t.message&&"no_detail"!==t.extra_info&&("bigwig"!==t.dataset_type||t.data[1][0]-t.data[0][0]==1)},init_for_tool_data:function(){this.data_manager.set("data_type","raw_data"),this.data_query_wait=1e3,this.dataset_check_type="state"}});var J=function(t,e){X.call(this,t,e,{resize:!1,header:!1}),this.container_div.addClass("label-track")};$(J.prototype,X.prototype,{init:function(){this.enabled=!0},predraw_init:function(){},_draw:function(e){for(var i=this.view,n=i.high-i.low,r=Math.floor(Math.pow(10,Math.floor(Math.log(n)/Math.log(10)))),a=Math.floor(i.low/r)*r,o=this.view.container.width(),s=t("<div/>").addClass("label-container");a<i.high;){var l=Math.floor((a-i.low)/n*o);s.append(t("<div/>").addClass("pos-label").text(m.default.commatize(a)).css({left:l})),a+=r}this.content_div.children(":first").remove(),this.content_div.append(s)}});var K=function(t,e,i){if(Y.call(this,t,e,i),this.drawables=[],"drawables"in i){for(var n,r=0;r<i.drawables.length;r++)n=i.drawables[r],this.drawables[r]=at(n,t,null),n.left_offset>this.left_offset&&(this.left_offset=n.left_offset);this.enabled=!0}c.each(this.drawables,function(t){(t instanceof et||t instanceof nt)&&t.change_mode("Coverage")}),this.update_icons(),this.obj_type="CompositeTrack"};$(K.prototype,Y.prototype,{display_modes:I,build_config_params:function(){return c.union(N.prototype.config_params,[{key:"min_value",label:"Min Value",type:"float",default_value:void 0},{key:"max_value",label:"Max Value",type:"float",default_value:void 0},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"height",type:"int",default_value:30,hidden:!0}])},action_icons_def:[{name:"composite_icon",title:(0,l.default)("Show individual tracks"),css_class:"layers-stack",on_click_fn:function(e){t(".tooltip").remove(),e.show_group()}}].concat(Y.prototype.action_icons_def),to_dict:L.prototype.to_dict,add_drawable:L.prototype.add_drawable,unpack_drawables:L.prototype.unpack_drawables,config_onchange:function(){this.set_name(this.config.get_value("name")),this.request_draw({clear_tile_cache:!0})},on_resize:function(){var t=this.visible_height_px;c.each(this.drawables,function(e){e.visible_height_px=t}),X.prototype.on_resize.call(this)},change_mode:function(t){Y.prototype.change_mode.call(this,t);for(var e=0;e<this.drawables.length;e++)this.drawables[e].change_mode(t)},init:function(){for(var e=[],i=0;i<this.drawables.length;i++)e.push(this.drawables[i].init());var n=this;t.when.apply(t,e).then(function(){n.enabled=!0,n.request_draw()})},update_icons:function(){this.action_icons.filters_icon.hide(),this.action_icons.tools_icon.hide(),this.action_icons.param_space_viz_icon.hide()},can_draw:N.prototype.can_draw,_get_drawables:function(){return this.drawables},show_group:function(){for(var t,e=new z(this.view,this.container,{name:this.config.get_value("name")}),i=0;i<this.drawables.length;i++)t=this.drawables[i],t.update_icons(),e.add_drawable(t),t.container=e,e.content_div.append(t.container_div);this.container.replace_drawable(this,e,!0);e.request_draw({clear_tile_cache:!0})},before_draw:function(){var t=c.min(c.map(this.drawables,function(t){return t.config.get_value("min_value")})),e=c.max(c.map(this.drawables,function(t){return t.config.get_value("max_value")}));this.config.set_value("min_value",t),this.config.set_value("max_value",e),c.each(this.drawables,function(i){i.config.set_value("min_value",t),i.config.set_value("max_value",e)})},update_all_min_max:function(){var t=this.config.get_value("min_value"),e=this.config.get_value("max_value");c.each(this.drawables,function(i){i.config.set_value("min_value",t),i.config.set_value("max_value",e)}),this.request_draw({clear_tile_cache:!0})},postdraw_actions:function(t,e,i,n){var r,a=-1;for(r=0;r<t.length;r++){var o=t[r].html_elt.find("canvas").height();o>a&&(a=o)}for(r=0;r<t.length;r++){var s=t[r];s.html_elt.find("canvas").height()!==a&&(this.draw_helper(s.region,i,{force:!0,height:a}),s.html_elt.remove())}var l=this,u=function(){l.update_all_min_max()};this._add_yaxis_label("min",u),this._add_yaxis_label("max",u)}});var Q=function(t){Y.call(this,t,{content_div:t.top_labeltrack},{resize:!1,header:!1}),this.left_offset=t.canvas_manager.char_width_px,this.container_div.addClass("reference-track"),this.data_url=Galaxy.root+"api/genomes/"+this.view.dbkey,this.data_url_extra_params={reference:!0},this.data_manager=new d.default.GenomeReferenceDataManager({data_url:this.data_url,can_subset:this.can_subset}),this.hide_contents()};$(Q.prototype,N.prototype,Y.prototype,{build_config_params:function(){return c.union(N.prototype.config_params,[{key:"height",type:"int",default_value:13,hidden:!0}])},init:function(){this.data_manager.clear(),this.enabled=!0},predraw_init:function(){},can_draw:N.prototype.can_draw,draw_helper:function(t,e,i){var n,r=this.tiles_div.is(":visible"),a=null;return e>this.view.canvas_manager.char_width_px?(this.tiles_div.show(),n=!0,a=Y.prototype.draw_helper.call(this,t,e,i)):(n=!1,this.tiles_div.hide()),r!==n&&this.view.resize_viewport(),a},can_subset:function(t){return!0},draw_tile:function(t,e,i,n,r){var a=this.data_manager.subset_entry(t,n),o=a.data,s=e.canvas;e.font=e.canvas.manager.default_font,e.textAlign="center";for(var l=0,u=o.length;l<u;l++)e.fillStyle=this.view.get_base_color(o[l]),e.fillText(o[l],Math.floor(l*r),10);return new U(this,n,r,s,a)}});var Z=function(e,i,n){this.mode="Histogram",Y.call(this,e,i,n),this.left_offset=30;var r=this;t.when(o(Galaxy.root+"datasets/"+this.dataset.id+"/display")).then(function(t){t&&(r.data_manager=new O.default.BBIDataManager({dataset:r.dataset}))})};$(Z.prototype,N.prototype,Y.prototype,{display_modes:I,build_config_params:function(){return c.union(N.prototype.config_params,[{key:"color",label:"Color",type:"color"},{key:"min_value",label:"Min Value",type:"float",default_value:void 0},{key:"max_value",label:"Max Value",type:"float",default_value:void 0},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"height",type:"int",default_value:30,hidden:!0}])},config_onchange:function(){this.set_name(this.config.get_value("name")),this.request_draw({clear_tile_cache:!0})},before_draw:function(){},draw_tile:function(t,e,i,n,r){return this._draw_line_track_tile(t,e,i,n,r)},can_subset:function(t){return t.data[1][0]-t.data[0][0]==1},postdraw_actions:function(t,e,i,n){this._add_yaxis_label("max"),this._add_yaxis_label("min")}});var tt=function(t,e,i){this.mode="Heatmap",Y.call(this,t,e,i)};$(tt.prototype,N.prototype,Y.prototype,{display_modes:["Heatmap"],build_config_params:function(){return c.union(N.prototype.config_params,[{key:"pos_color",label:"Positive Color",type:"color",default_value:"#FF8C00"},{key:"neg_color",label:"Negative Color",type:"color",default_value:"#4169E1"},{key:"min_value",label:"Min Value",type:"int",default_value:void 0},{key:"max_value",label:"Max Value",type:"int",default_value:void 0},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"height",type:"int",default_value:500,hidden:!0}])},config_onchange:function(){this.set_name(this.config.get_value("name")),this.request_draw({clear_tile_cache:!0})},predraw_init:function(){var e=this;return t.getJSON(e.dataset.url(),{data_type:"data",stats:!0,chrom:e.view.chrom,low:0,high:e.view.max_high,hda_ldda:e.dataset.get("hda_ldda")},function(t){t.data})},draw_tile:function(t,e,i,n,r){var a=e.canvas;return new b.default.DiagonalHeatmapPainter(t.data,n.get("start"),n.get("end"),this.config.to_key_value_dict(),i).draw(e,a.width,a.height,r),new U(this,n,r,a,t.data)}});var et=function(t,e,i){Y.call(this,t,e,i),this.container_div.addClass("feature-track"),this.summary_draw_height=30,this.slotters={},this.start_end_dct={},this.left_offset=200,this.set_painter_from_config()};$(et.prototype,N.prototype,Y.prototype,{display_modes:["Auto","Coverage","Dense","Squish","Pack"],build_config_params:function(){return c.union(N.prototype.config_params,[{key:"block_color",label:"Block color",type:"color"},{key:"reverse_strand_color",label:"Antisense strand color",type:"color"},{key:"label_color",label:"Label color",type:"color",default_value:"black"},{key:"show_counts",label:"Show summary counts",type:"bool",default_value:!0,help:"Show the number of items in each bin when drawing summary histogram"},{key:"min_value",label:"Histogram minimum",type:"float",default_value:void 0,help:"clear value to set automatically"},{key:"max_value",label:"Histogram maximum",type:"float",default_value:void 0,help:"clear value to set automatically"},{key:"connector_style",label:"Connector style",type:"select",default_value:"fishbones",options:[{label:"Line with arrows",value:"fishbone"},{label:"Arcs",value:"arcs"}]},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"height",type:"int",default_value:0,hidden:!0}])},config_onchange:function(){this.set_name(this.config.get_value("name")),this.set_painter_from_config(),this.request_draw({clear_tile_cache:!0})},set_painter_from_config:function(){"arcs"===this.config.get_value("connector_style")?this.painter=b.default.ArcLinkedFeaturePainter:this.painter=b.default.LinkedFeaturePainter},postdraw_actions:function(e,i,n,r){Y.prototype.postdraw_actions.call(this,e,i,n,r);var a,o=this;if(0===c.filter(e,function(t){return t instanceof W}).length){var s={};c.each(c.pluck(e,"incomplete_features"),function(t){c.each(t,function(t){s[t[0]]=t})});var l=this;c.each(e,function(e){var i=c.omit(s,c.map(e.incomplete_features,function(t){return t[0]}));if(i=c.omit(i,c.keys(e.other_tiles_features_drawn)),0!==c.size(i)){var n={data:c.values(i)},r=l.view.canvas_manager.new_canvas(),a=r.getContext("2d");r.height=Math.max(e.canvas.height,l.get_canvas_height(n,e.mode,e.w_scale,100)),r.width=e.canvas.width,a.drawImage(e.canvas,0,0),a.translate(o.left_offset,0);var u=l.draw_tile(n,a,e.mode,e.region,e.w_scale,e.seq_data);t(e.canvas).replaceWith(t(u.canvas)),e.canvas=r,c.extend(e.other_tiles_features_drawn,s)}})}if(o.filters_manager){var u,h=o.filters_manager.filters;for(u=0;u<h.length;u++)h[u].update_ui_elt();var d,f,p=!1;for(a=0;a<e.length;a++)if(e[a].data.length)for(d=e[a].data[0],u=0;u<h.length;u++)if(f=h[u],f.applies_to(d)&&f.min!==f.max){p=!0;break}o.filters_available!==p&&(o.filters_available=p,o.filters_available||o.filters_manager.hide(),o.update_icons())}if(e[0]instanceof G){var g=!0;for(a=0;a<e.length;a++)if(!e[a].all_slotted){g=!1;break}this.action_icons.show_more_rows_icon.toggle(!g)}else this.action_icons.show_more_rows_icon.hide()},update_auto_mode:function(t){"Auto"===this.mode&&("no_detail"===t&&(t="feature spans"),this.action_icons.mode_icon.attr("title","Set display mode (now: Auto/"+t+")"))},incremental_slots:function(t,e,i){var n=this.view.canvas_manager.dummy_context,r=this.slotters[t];return r&&r.mode===i||(r=new _.default.FeatureSlotter(t,i,100,function(t){return n.measureText(t)}),this.slotters[t]=r),r.slot_features(e)},get_mode:function(t){return"no_detail"===t.extra_info||this.is_overview?"no_detail":this.view.high-this.view.low>12e3?"Squish":"Pack"},get_canvas_height:function(t,e,i,n){if("Coverage"===e||"bigwig"===t.dataset_type)return this.summary_draw_height;var r=this.incremental_slots(i,t.data,e),a=new this.painter(null,null,null,this.config.to_key_value_dict(),e);return Math.max(this.min_height_px,a.get_required_height(r,n))},draw_tile:function(t,e,i,n,r,a,o){var s=this,l=e.canvas,u=n.get("start"),c=n.get("end"),h=this.left_offset;if("bigwig"===t.dataset_type)return this._draw_line_track_tile(t,e,i,n,r);var d=[],f=this.slotters[r].slots,p=!0;if(t.data)for(var g=this.filters_manager.filters,m=0,v=t.data.length;m<v;m++){for(var _,y=t.data[m],b=!1,w=0,x=g.length;w<x;w++)if(_=g[w],_.update_attrs(y),!_.keep(y)){b=!0;break}b||(d.push(y),y[0]in f||(p=!1))}var C=this.filters_manager.alpha_filter?new V(this.filters_manager.alpha_filter):null,k=this.filters_manager.height_filter?new V(this.filters_manager.height_filter):null,S=new this.painter(d,u,c,this.config.to_key_value_dict(),i,C,k,a,function(t){return s.view.get_base_color(t)}),T=null;if(e.fillStyle=this.config.get_value("block_color"),e.font=e.canvas.manager.default_font,e.textAlign="right",t.data){var A=S.draw(e,l.width,l.height,r,f);T=A.feature_mapper,incomplete_features=A.incomplete_features,T.translation=-h}return o?void 0:new G(s,n,r,l,t.data,i,t.message,p,T,incomplete_features,a)}});var it=function(t,e,i){Y.call(this,t,e,i),this.painter=b.default.VariantPainter,this.summary_draw_height=30,this.left_offset=30};$(it.prototype,N.prototype,Y.prototype,{display_modes:["Auto","Coverage","Dense","Squish","Pack"],build_config_params:function(){return c.union(N.prototype.config_params,[{key:"color",label:"Histogram color",type:"color"},{key:"show_sample_data",label:"Show sample data",type:"bool",default_value:!0},{key:"show_labels",label:"Show summary and sample labels",type:"bool",default_value:!0},{key:"summary_height",label:"Locus summary height",type:"float",default_value:20},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"height",type:"int",default_value:0,hidden:!0}])},config_onchange:function(){this.set_name(this.config.get_value("name")),this.request_draw({clear_tile_cache:!0})},draw_tile:function(t,e,i,n,r){if("bigwig"===t.dataset_type)return this._draw_line_track_tile(t,e,"Histogram",n,r);var a=this.view;return new this.painter(t.data,n.get("start"),n.get("end"),this.config.to_key_value_dict(),i,function(t){return a.get_base_color(t)}).draw(e,e.canvas.width,e.canvas.height,r),new U(this,n,r,e.canvas,t.data)},get_canvas_height:function(t,e,i,n){if("bigwig"===t.dataset_type)return this.summary_draw_height;var r=this.dataset.get_metadata("sample_names")?this.dataset.get_metadata("sample_names").length:0;return 0===r&&0!==t.data.length&&(r=t.data[0][7].match(/,/g),r=null===r?1:r.length+1),new this.painter(null,null,null,this.config.to_key_value_dict(),e).get_required_height(r)},predraw_init:function(){var t=[X.prototype.predraw_init.call(this)];return this.dataset.get_metadata("sample_names")||t.push(this.dataset.fetch()),t},postdraw_actions:function(e,i,n,r){Y.prototype.postdraw_actions.call(this,e,i,n,r);var a=c.filter(e,function(t){return t instanceof W}),o=this.dataset.get_metadata("sample_names");if(0===a.length&&this.config.get_value("show_labels")&&o&&o.length>1){var s;if(0===this.container_div.find(".yaxislabel.variant").length&&(s=this.config.get_value("summary_height")/2,this.tiles_div.prepend(t("<div/>").text("Summary").addClass("yaxislabel variant top").css({"font-size":s+"px",top:(this.config.get_value("summary_height")-s)/2+"px"})),this.config.get_value("show_sample_data"))){var l=o.join("<br/>");this.tiles_div.prepend(t("<div/>").html(l).addClass("yaxislabel variant top sample").css({top:this.config.get_value("summary_height")}))}s=("Squish"===this.mode?5:10)+"px",t(this.tiles_div).find(".sample").css({"font-size":s,"line-height":s}),t(this.tiles_div).find(".yaxislabel").css("color",this.config.get_value("label_color"))}else this.container_div.find(".yaxislabel.variant").remove()}});var nt=function(t,e,i){et.call(this,t,e,i),this.painter=b.default.ReadPainter,this.update_icons()};$(nt.prototype,N.prototype,Y.prototype,et.prototype,{build_config_params:function(){return c.union(N.prototype.config_params,[{key:"block_color",label:"Histogram 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Use this option to resume those tools using the new output(s) of this tool run."})},submit:function(t,e){var i=this,a={tool_id:t.id,tool_version:t.version,inputs:this.form.data.create()};if(this.form.trigger("reset"),!i.validate(a))return Galaxy.emit.debug("tool-form::submit()","Submission canceled. Validation failed."),void(e&&e());if(t.action!==Galaxy.root+"tool_runner/index"){var o=n("<form/>").attr({action:t.action,method:t.method,enctype:t.enctype});return r.each(a.inputs,function(t,e){o.append(n("<input/>").attr({name:e,value:t}))}),o.hide().appendTo("body").submit().remove(),void(e&&e())}Galaxy.emit.debug("tool-form::submit()","Validation complete.",a),u.default.request({type:"POST",url:Galaxy.root+"api/tools",data:a,success:function(t){if(e&&e(),i.$el.children().hide(),i.$el.append(i._templateSuccess(t)),t.jobs&&t.jobs.length>0){i.$el.append(n("<div/>",{id:"webhook-view"}));new v.default.WebhookView({urlRoot:Galaxy.root+"api/webhooks/tool",toolId:a.tool_id})}parent.Galaxy&&parent.Galaxy.currHistoryPanel&&parent.Galaxy.currHistoryPanel.refreshContents()},error:function(t){e&&e(),Galaxy.emit.debug("tool-form::submit","Submission failed.",t);var n=!1;if(t&&t.err_data){var r=i.form.data.matchResponse(t.err_data);for(var o in r){i.form.highlight(o,r[o]),n=!0;break}}n||i.modal.show({title:(0,s.default)("Job submission failed"),body:i._templateError(a,t&&t.err_msg),buttons:{Close:function(){i.modal.hide()}}})}})},validate:function(t){var e=t.inputs,i=-1,n=null;for(var r in e){var a=e[r],o=this.form.data.match(r),s=this.form.field_list[o],l=this.form.input_list[o];if(o&&l&&s){if(!l.optional&&null==a)return this.form.highlight(o),!1;if(a&&a.batch){var u=a.values.length,c=u>0&&a.values[0]&&a.values[0].src;if(c)if(null===n)n=c;else if(n!==c)return this.form.highlight(o,"Please select either dataset or dataset list fields for all batch mode fields."),!1;if(-1===i)i=u;else if(i!==u)return this.form.highlight(o,"Please make sure that you select the same number of inputs for all batch mode fields. This field contains <b>"+u+"</b> selection(s) while a previous field contains <b>"+i+"</b>."),!1}}else Galaxy.emit.debug("tool-form::validate()","Retrieving input objects failed.")}return!0},_templateSuccess:function(t){if(t.jobs&&t.jobs.length>0){var e=t.jobs.length,i=1==e?"1 job has":e+" jobs have",a=n("<div/>").addClass("donemessagelarge").append(n("<p/>").text(i+" been successfully added to the queue - resulting in the following datasets:"));return r.each(t.outputs,function(t){a.append(n("<p/>").addClass("messagerow").append(n("<b/>").text(t.hid+": "+t.name)))}),a.append(n("<p/>").append("<b/>").text("You can check the status of queued jobs and view the resulting data by refreshing the History pane. When the job has been run the status will change from 'running' to 'finished' if completed successfully or 'error' if problems were encountered.")),a}return this._templateError(t,"Invalid success response. No jobs found.")},_templateError:function(t,e){return n("<div/>").addClass("errormessagelarge").append(n("<p/>").text("The server could not complete the request. Please contact the Galaxy Team if this error persists. "+(e||""))).append(n("<pre/>").text(JSON.stringify(t,null,4)))}});e.default={View:_}}).call(e,i(2),i(0),i(1))},function(t,e,i){"use strict";(function(t,n){Object.defineProperty(e,"__esModule",{value:!0});var r=i(5),a=function(t){return t&&t.__esModule?t:{default:t}}(r);e.default=t.Model.extend({initialize:function(){this.active={},this.last=null},execute:function(t){var e=this,i=a.default.uid(),r=t.length>0;this.active[i]=!0;var o=n.Deferred();o.promise().always(function(){delete e.active[i],r&&Galaxy.emit.debug("deferred::execute()",this.state().charAt(0).toUpperCase()+this.state().slice(1)+" "+i)}),n.when(this.last).always(function(){e.active[i]?(r&&Galaxy.emit.debug("deferred::execute()","Running "+i),t(o),!r&&o.resolve()):o.reject()}),this.last=o.promise()},reset:function(){Galaxy.emit.debug("deferred::execute()","Reset");for(var t in this.active)this.active[t]=!1},ready:function(){return n.isEmptyObject(this.active)}})}).call(e,i(2),i(0))},function(t,e,i){"use 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i=t[e],r=null,a=null;"string"!=n.type(i)?(r=i.id,a=i.name):r=a=i,null!=r&&this.add({id:r,name:a})}this._refresh()}var o=[];return this.$(".ui-list-id").each(function(){o.push({id:n(this).prop("id"),name:n(this).find(".ui-list-name").html()})}),0==o.length?null:o},add:function(t){var e=this;if(0===this.$('[id="'+t.id+'"]').length)if(o.default.isEmpty(t.id))this.message.update({message:"Please select a valid "+this.name+".",status:"danger"});else{var i=n(this._templateRow({id:t.id,name:t.name}));i.on("click",function(){i.remove(),e._refresh()}),i.on("mouseover",function(){i.addClass("portlet-highlight")}),i.on("mouseout",function(){i.removeClass("portlet-highlight")}),this.portlet.append(i),this._refresh()}else this.message.update({message:"This "+this.name+" is already in the 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i=n.prop("readonly");i===e&&(i=!1),this.readonly(i),_(this.container,this.opts.element,this.opts.adaptContainerCssClass),this.container.addClass(S(this.opts.containerCssClass,this.opts.element)),_(this.dropdown,this.opts.element,this.opts.adaptDropdownCssClass),this.dropdown.addClass(S(this.opts.dropdownCssClass,this.opts.element))}),n.length&&n[0].attachEvent&&n.each(function(){this.attachEvent("onpropertychange",r._sync)}),(i=window.MutationObserver||window.WebKitMutationObserver||window.MozMutationObserver)!==e&&(this.propertyObserver&&(delete this.propertyObserver,this.propertyObserver=null),this.propertyObserver=new i(function(e){t.each(e,r._sync)}),this.propertyObserver.observe(n.get(0),{attributes:!0,subtree:!1}))},triggerSelect:function(e){var i=t.Event("select2-selecting",{val:this.id(e),object:e,choice:e});return this.opts.element.trigger(i),!i.isDefaultPrevented()},triggerChange:function(e){e=e||{},e=t.extend({},e,{type:"change",val:this.val()}),this.opts.element.data("select2-change-triggered",!0),this.opts.element.trigger(e),this.opts.element.data("select2-change-triggered",!1),this.opts.element.click(),this.opts.blurOnChange&&this.opts.element.blur()},isInterfaceEnabled:function(){return!0===this.enabledInterface},enableInterface:function(){var t=this._enabled&&!this._readonly,e=!t;return t!==this.enabledInterface&&(this.container.toggleClass("select2-container-disabled",e),this.close(),this.enabledInterface=t,!0)},enable:function(t){t===e&&(t=!0),this._enabled!==t&&(this._enabled=t,this.opts.element.prop("disabled",!t),this.enableInterface())},disable:function(){this.enable(!1)},readonly:function(t){t===e&&(t=!1),this._readonly!==t&&(this._readonly=t,this.opts.element.prop("readonly",t),this.enableInterface())},opened:function(){return!!this.container&&this.container.hasClass("select2-dropdown-open")},positionDropdown:function(){var e,i,n,r,a,o=this.dropdown,s=this.container.offset(),l=this.container.outerHeight(!1),u=this.container.outerWidth(!1),c=o.outerHeight(!1),h=t(window),d=h.width(),f=h.height(),p=h.scrollLeft()+d,g=h.scrollTop()+f,m=s.top+l,v=s.left,_=m+c<=g,y=s.top-c>=h.scrollTop(),b=o.outerWidth(!1),w=v+b<=p,x=o.hasClass("select2-drop-above");x?(i=!0,!y&&_&&(n=!0,i=!1)):(i=!1,!_&&y&&(n=!0,i=!0)),n&&(o.hide(),s=this.container.offset(),l=this.container.outerHeight(!1),u=this.container.outerWidth(!1),c=o.outerHeight(!1),p=h.scrollLeft()+d,g=h.scrollTop()+f,m=s.top+l,v=s.left,b=o.outerWidth(!1),w=v+b<=p,o.show(),this.focusSearch()),this.opts.dropdownAutoWidth?(a=t(".select2-results",o)[0],o.addClass("select2-drop-auto-width"),o.css("width",""),b=o.outerWidth(!1)+(a.scrollHeight===a.clientHeight?0:N.width),b>u?u=b:b=u,c=o.outerHeight(!1),w=v+b<=p):this.container.removeClass("select2-drop-auto-width"),"static"!==this.body.css("position")&&(e=this.body.offset(),m-=e.top,v-=e.left),w||(v=s.left+this.container.outerWidth(!1)-b),r={left:v,width:u},i?(r.top=s.top-c,r.bottom="auto",this.container.addClass("select2-drop-above"),o.addClass("select2-drop-above")):(r.top=m,r.bottom="auto",this.container.removeClass("select2-drop-above"),o.removeClass("select2-drop-above")),r=t.extend(r,S(this.opts.dropdownCss,this.opts.element)),o.css(r)},shouldOpen:function(){var e;return!this.opened()&&(!1!==this._enabled&&!0!==this._readonly&&(e=t.Event("select2-opening"),this.opts.element.trigger(e),!e.isDefaultPrevented()))},clearDropdownAlignmentPreference:function(){this.container.removeClass("select2-drop-above"),this.dropdown.removeClass("select2-drop-above")},open:function(){return!!this.shouldOpen()&&(this.opening(),I.on("mousemove.select2Event",function(t){L.x=t.pageX,L.y=t.pageY}),!0)},opening:function(){var e,n=this.containerEventName,r="scroll."+n,a="resize."+n,o="orientationchange."+n;this.container.addClass("select2-dropdown-open").addClass("select2-container-active"),this.clearDropdownAlignmentPreference(),this.dropdown[0]!==this.body.children().last()[0]&&this.dropdown.detach().appendTo(this.body),e=t("#select2-drop-mask"),0==e.length&&(e=t(document.createElement("div")),e.attr("id","select2-drop-mask").attr("class","select2-drop-mask"),e.hide(),e.appendTo(this.body),e.on("mousedown touchstart click",function(n){i(e);var r,a=t("#select2-drop");a.length>0&&(r=a.data("select2"),r.opts.selectOnBlur&&r.selectHighlighted({noFocus:!0}),r.close(),n.preventDefault(),n.stopPropagation())})),this.dropdown.prev()[0]!==e[0]&&this.dropdown.before(e),t("#select2-drop").removeAttr("id"),this.dropdown.attr("id","select2-drop"),e.show(),this.positionDropdown(),this.dropdown.show(),this.positionDropdown(),this.dropdown.addClass("select2-drop-active");var s=this;this.container.parents().add(window).each(function(){t(this).on(a+" "+r+" "+o,function(t){s.opened()&&s.positionDropdown()})})},close:function(){if(this.opened()){var e=this.containerEventName,i="scroll."+e,n="resize."+e,r="orientationchange."+e;this.container.parents().add(window).each(function(){t(this).off(i).off(n).off(r)}),this.clearDropdownAlignmentPreference(),t("#select2-drop-mask").hide(),this.dropdown.removeAttr("id"),this.dropdown.hide(),this.container.removeClass("select2-dropdown-open").removeClass("select2-container-active"),this.results.empty(),I.off("mousemove.select2Event"),this.clearSearch(),this.search.removeClass("select2-active"),this.opts.element.trigger(t.Event("select2-close"))}},externalSearch:function(t){this.open(),this.search.val(t),this.updateResults(!1)},clearSearch:function(){},getMaximumSelectionSize:function(){return S(this.opts.maximumSelectionSize,this.opts.element)},ensureHighlightVisible:function(){var e,i,n,r,a,o,s,l,u=this.results;if(!((i=this.highlight())<0)){if(0==i)return void u.scrollTop(0);e=this.findHighlightableChoices().find(".select2-result-label"),n=t(e[i]),l=(n.offset()||{}).top||0,r=l+n.outerHeight(!0),i===e.length-1&&(s=u.find("li.select2-more-results"),s.length>0&&(r=s.offset().top+s.outerHeight(!0))),a=u.offset().top+u.outerHeight(!0),r>a&&u.scrollTop(u.scrollTop()+(r-a)),o=l-u.offset().top,o<0&&"none"!=n.css("display")&&u.scrollTop(u.scrollTop()+o)}},findHighlightableChoices:function(){return this.results.find(".select2-result-selectable:not(.select2-disabled):not(.select2-selected)")},moveHighlight:function(e){for(var i=this.findHighlightableChoices(),n=this.highlight();n>-1&&n<i.length;){n+=e;var r=t(i[n]);if(r.hasClass("select2-result-selectable")&&!r.hasClass("select2-disabled")&&!r.hasClass("select2-selected")){this.highlight(n);break}}},highlight:function(e){var i,n,a=this.findHighlightableChoices();if(0===arguments.length)return r(a.filter(".select2-highlighted")[0],a.get());e>=a.length&&(e=a.length-1),e<0&&(e=0),this.removeHighlight(),i=t(a[e]),i.addClass("select2-highlighted"),this.search.attr("aria-activedescendant",i.find(".select2-result-label").attr("id")),this.ensureHighlightVisible(),this.liveRegion.text(i.text()),(n=i.data("select2-data"))&&this.opts.element.trigger({type:"select2-highlight",val:this.id(n),choice:n})},removeHighlight:function(){this.results.find(".select2-highlighted").removeClass("select2-highlighted")},touchMoved:function(){this._touchMoved=!0},clearTouchMoved:function(){this._touchMoved=!1},countSelectableResults:function(){return this.findHighlightableChoices().length},highlightUnderEvent:function(e){var i=t(e.target).closest(".select2-result-selectable");if(i.length>0&&!i.is(".select2-highlighted")){var n=this.findHighlightableChoices();this.highlight(n.index(i))}else 0==i.length&&this.removeHighlight()},loadMoreIfNeeded:function(){var t=this.results,e=t.find("li.select2-more-results"),i=this.resultsPage+1,n=this,r=this.search.val(),a=this.context;0!==e.length&&e.offset().top-t.offset().top-t.height()<=this.opts.loadMorePadding&&(e.addClass("select2-active"),this.opts.query({element:this.opts.element,term:r,page:i,context:a,matcher:this.opts.matcher,callback:this.bind(function(o){n.opened()&&(n.opts.populateResults.call(this,t,o.results,{term:r,page:i,context:a}),n.postprocessResults(o,!1,!1),!0===o.more?(e.detach().appendTo(t).text(S(n.opts.formatLoadMore,n.opts.element,i+1)),window.setTimeout(function(){n.loadMoreIfNeeded()},10)):e.remove(),n.positionDropdown(),n.resultsPage=i,n.context=o.context,this.opts.element.trigger({type:"select2-loaded",items:o}))})}))},tokenize:function(){},updateResults:function(i){function n(){u.removeClass("select2-active"),d.positionDropdown(),c.find(".select2-no-results,.select2-selection-limit,.select2-searching").length?d.liveRegion.text(c.text()):d.liveRegion.text(d.opts.formatMatches(c.find(".select2-result-selectable").length))}function r(t){c.html(t),n()}var a,s,l,u=this.search,c=this.results,h=this.opts,d=this,f=u.val(),p=t.data(this.container,"select2-last-term");if((!0===i||!p||!o(f,p))&&(t.data(this.container,"select2-last-term",f),!0===i||!1!==this.showSearchInput&&this.opened())){l=++this.queryCount;var g=this.getMaximumSelectionSize();if(g>=1&&(a=this.data(),t.isArray(a)&&a.length>=g&&k(h.formatSelectionTooBig,"formatSelectionTooBig")))return void r("<li class='select2-selection-limit'>"+S(h.formatSelectionTooBig,h.element,g)+"</li>");if(u.val().length<h.minimumInputLength)return r(k(h.formatInputTooShort,"formatInputTooShort")?"<li class='select2-no-results'>"+S(h.formatInputTooShort,h.element,u.val(),h.minimumInputLength)+"</li>":""),void(i&&this.showSearch&&this.showSearch(!0));if(h.maximumInputLength&&u.val().length>h.maximumInputLength)return void r(k(h.formatInputTooLong,"formatInputTooLong")?"<li class='select2-no-results'>"+S(h.formatInputTooLong,h.element,u.val(),h.maximumInputLength)+"</li>":"");h.formatSearching&&0===this.findHighlightableChoices().length&&r("<li class='select2-searching'>"+S(h.formatSearching,h.element)+"</li>"),u.addClass("select2-active"),this.removeHighlight(),s=this.tokenize(),s!=e&&null!=s&&u.val(s),this.resultsPage=1,h.query({element:h.element,term:u.val(),page:this.resultsPage,context:null,matcher:h.matcher,callback:this.bind(function(a){var s;if(l==this.queryCount){if(!this.opened())return void this.search.removeClass("select2-active");if(a.hasError!==e&&k(h.formatAjaxError,"formatAjaxError"))return void r("<li class='select2-ajax-error'>"+S(h.formatAjaxError,h.element,a.jqXHR,a.textStatus,a.errorThrown)+"</li>");if(this.context=a.context===e?null:a.context,this.opts.createSearchChoice&&""!==u.val()&&(s=this.opts.createSearchChoice.call(d,u.val(),a.results))!==e&&null!==s&&d.id(s)!==e&&null!==d.id(s)&&0===t(a.results).filter(function(){return o(d.id(this),d.id(s))}).length&&this.opts.createSearchChoicePosition(a.results,s),0===a.results.length&&k(h.formatNoMatches,"formatNoMatches"))return void r("<li class='select2-no-results'>"+S(h.formatNoMatches,h.element,u.val())+"</li>");c.empty(),d.opts.populateResults.call(this,c,a.results,{term:u.val(),page:this.resultsPage,context:null}),!0===a.more&&k(h.formatLoadMore,"formatLoadMore")&&(c.append("<li class='select2-more-results'>"+h.escapeMarkup(S(h.formatLoadMore,h.element,this.resultsPage))+"</li>"),window.setTimeout(function(){d.loadMoreIfNeeded()},10)),this.postprocessResults(a,i),n(),this.opts.element.trigger({type:"select2-loaded",items:a})}})})}},cancel:function(){this.close()},blur:function(){this.opts.selectOnBlur&&this.selectHighlighted({noFocus:!0}),this.close(),this.container.removeClass("select2-container-active"),this.search[0]===document.activeElement&&this.search.blur(),this.clearSearch(),this.selection.find(".select2-search-choice-focus").removeClass("select2-search-choice-focus")},focusSearch:function(){f(this.search)},selectHighlighted:function(t){if(this._touchMoved)return void this.clearTouchMoved();var e=this.highlight(),i=this.results.find(".select2-highlighted"),n=i.closest(".select2-result").data("select2-data");n?(this.highlight(e),this.onSelect(n,t)):t&&t.noFocus&&this.close()},getPlaceholder:function(){var t;return this.opts.element.attr("placeholder")||this.opts.element.attr("data-placeholder")||this.opts.element.data("placeholder")||this.opts.placeholder||((t=this.getPlaceholderOption())!==e?t.text():e)},getPlaceholderOption:function(){if(this.select){var i=this.select.children("option").first();if(this.opts.placeholderOption!==e)return"first"===this.opts.placeholderOption&&i||"function"==typeof this.opts.placeholderOption&&this.opts.placeholderOption(this.select);if(""===t.trim(i.text())&&""===i.val())return i}},initContainerWidth:function(){function i(){var i,n,r,a,o,s;if("off"===this.opts.width)return null;if("element"===this.opts.width)return 0===this.opts.element.outerWidth(!1)?"auto":this.opts.element.outerWidth(!1)+"px";if("copy"===this.opts.width||"resolve"===this.opts.width){if((i=this.opts.element.attr("style"))!==e)for(n=i.split(";"),a=0,o=n.length;a<o;a+=1)if(s=n[a].replace(/\s/g,""),null!==(r=s.match(/^width:(([-+]?([0-9]*\.)?[0-9]+)(px|em|ex|%|in|cm|mm|pt|pc))/i))&&r.length>=1)return r[1];return"resolve"===this.opts.width?(i=this.opts.element.css("width"),i.indexOf("%")>0?i:0===this.opts.element.outerWidth(!1)?"auto":this.opts.element.outerWidth(!1)+"px"):null}return t.isFunction(this.opts.width)?this.opts.width():this.opts.width}var n=i.call(this);null!==n&&this.container.css("width",n)}}),D=E($,{createContainer:function(){return t(document.createElement("div")).attr({class:"select2-container"}).html(["<a href='javascript:void(0)' class='select2-choice' tabindex='-1'>","   <span class='select2-chosen'>&#160;</span><abbr class='select2-search-choice-close'></abbr>","   <span class='select2-arrow' role='presentation'><b role='presentation'></b></span>","</a>","<label for='' class='select2-offscreen'></label>","<input class='select2-focusser select2-offscreen' type='text' aria-haspopup='true' role='button' />","<div class='select2-drop select2-display-none'>","   <div class='select2-search'>","       <label for='' class='select2-offscreen'></label>","       <input type='text' autocomplete='off' autocorrect='off' autocapitalize='off' spellcheck='false' class='select2-input' role='combobox' aria-expanded='true'","       aria-autocomplete='list' />","   </div>","   <ul class='select2-results' role='listbox'>","   </ul>","</div>"].join(""))},enableInterface:function(){this.parent.enableInterface.apply(this,arguments)&&this.focusser.prop("disabled",!this.isInterfaceEnabled())},opening:function(){var i,n,r;this.opts.minimumResultsForSearch>=0&&this.showSearch(!0),this.parent.opening.apply(this,arguments),!1!==this.showSearchInput&&this.search.val(this.focusser.val()),this.opts.shouldFocusInput(this)&&(this.search.focus(),i=this.search.get(0),i.createTextRange?(n=i.createTextRange(),n.collapse(!1),n.select()):i.setSelectionRange&&(r=this.search.val().length,i.setSelectionRange(r,r))),""===this.search.val()&&this.nextSearchTerm!=e&&(this.search.val(this.nextSearchTerm),this.search.select()),this.focusser.prop("disabled",!0).val(""),this.updateResults(!0),this.opts.element.trigger(t.Event("select2-open"))},close:function(){this.opened()&&(this.parent.close.apply(this,arguments),this.focusser.prop("disabled",!1),this.opts.shouldFocusInput(this)&&this.focusser.focus())},focus:function(){this.opened()?this.close():(this.focusser.prop("disabled",!1),this.opts.shouldFocusInput(this)&&this.focusser.focus())},isFocused:function(){return this.container.hasClass("select2-container-active")},cancel:function(){this.parent.cancel.apply(this,arguments),this.focusser.prop("disabled",!1),this.opts.shouldFocusInput(this)&&this.focusser.focus()},destroy:function(){t("label[for='"+this.focusser.attr("id")+"']").attr("for",this.opts.element.attr("id")),this.parent.destroy.apply(this,arguments),M.call(this,"selection","focusser")},initContainer:function(){var e,n,r=this.container,a=this.dropdown,o=P();this.opts.minimumResultsForSearch<0?this.showSearch(!1):this.showSearch(!0),this.selection=e=r.find(".select2-choice"),this.focusser=r.find(".select2-focusser"),e.find(".select2-chosen").attr("id","select2-chosen-"+o),this.focusser.attr("aria-labelledby","select2-chosen-"+o),this.results.attr("id","select2-results-"+o),this.search.attr("aria-owns","select2-results-"+o),this.focusser.attr("id","s2id_autogen"+o),n=t("label[for='"+this.opts.element.attr("id")+"']"),this.focusser.prev().text(n.text()).attr("for",this.focusser.attr("id"));var s=this.opts.element.attr("title");this.opts.element.attr("title",s||n.text()),this.focusser.attr("tabindex",this.elementTabIndex),this.search.attr("id",this.focusser.attr("id")+"_search"),this.search.prev().text(t("label[for='"+this.focusser.attr("id")+"']").text()).attr("for",this.search.attr("id")),this.search.on("keydown",this.bind(function(t){if(this.isInterfaceEnabled()&&229!=t.keyCode){if(t.which===O.PAGE_UP||t.which===O.PAGE_DOWN)return void g(t);switch(t.which){case O.UP:case O.DOWN:return this.moveHighlight(t.which===O.UP?-1:1),void g(t);case O.ENTER:return this.selectHighlighted(),void g(t);case O.TAB:return void this.selectHighlighted({noFocus:!0});case O.ESC:return this.cancel(t),void g(t)}}})),this.search.on("blur",this.bind(function(t){document.activeElement===this.body.get(0)&&window.setTimeout(this.bind(function(){this.opened()&&this.search.focus()}),0)})),this.focusser.on("keydown",this.bind(function(t){if(this.isInterfaceEnabled()&&t.which!==O.TAB&&!O.isControl(t)&&!O.isFunctionKey(t)&&t.which!==O.ESC){if(!1===this.opts.openOnEnter&&t.which===O.ENTER)return void g(t);if(t.which==O.DOWN||t.which==O.UP||t.which==O.ENTER&&this.opts.openOnEnter){if(t.altKey||t.ctrlKey||t.shiftKey||t.metaKey)return;return this.open(),void g(t)}return t.which==O.DELETE||t.which==O.BACKSPACE?(this.opts.allowClear&&this.clear(),void g(t)):void 0}})),u(this.focusser),this.focusser.on("keyup-change input",this.bind(function(t){if(this.opts.minimumResultsForSearch>=0){if(t.stopPropagation(),this.opened())return;this.open()}})),e.on("mousedown touchstart","abbr",this.bind(function(t){this.isInterfaceEnabled()&&(this.clear(),m(t),this.close(),this.selection.focus())})),e.on("mousedown touchstart",this.bind(function(n){i(e),this.container.hasClass("select2-container-active")||this.opts.element.trigger(t.Event("select2-focus")),this.opened()?this.close():this.isInterfaceEnabled()&&this.open(),g(n)})),a.on("mousedown touchstart",this.bind(function(){this.opts.shouldFocusInput(this)&&this.search.focus()})),e.on("focus",this.bind(function(t){g(t)})),this.focusser.on("focus",this.bind(function(){this.container.hasClass("select2-container-active")||this.opts.element.trigger(t.Event("select2-focus")),this.container.addClass("select2-container-active")})).on("blur",this.bind(function(){this.opened()||(this.container.removeClass("select2-container-active"),this.opts.element.trigger(t.Event("select2-blur")))})),this.search.on("focus",this.bind(function(){this.container.hasClass("select2-container-active")||this.opts.element.trigger(t.Event("select2-focus")),this.container.addClass("select2-container-active")})),this.initContainerWidth(),this.opts.element.addClass("select2-offscreen"),this.setPlaceholder()},clear:function(e){var i=this.selection.data("select2-data");if(i){var n=t.Event("select2-clearing");if(this.opts.element.trigger(n),n.isDefaultPrevented())return;var r=this.getPlaceholderOption();this.opts.element.val(r?r.val():""),this.selection.find(".select2-chosen").empty(),this.selection.removeData("select2-data"),this.setPlaceholder(),!1!==e&&(this.opts.element.trigger({type:"select2-removed",val:this.id(i),choice:i}),this.triggerChange({removed:i}))}},initSelection:function(){if(this.isPlaceholderOptionSelected())this.updateSelection(null),this.close(),this.setPlaceholder();else{var t=this;this.opts.initSelection.call(null,this.opts.element,function(i){i!==e&&null!==i&&(t.updateSelection(i),t.close(),t.setPlaceholder(),t.nextSearchTerm=t.opts.nextSearchTerm(i,t.search.val()))})}},isPlaceholderOptionSelected:function(){var t;return this.getPlaceholder()!==e&&((t=this.getPlaceholderOption())!==e&&t.prop("selected")||""===this.opts.element.val()||this.opts.element.val()===e||null===this.opts.element.val())},prepareOpts:function(){var e=this.parent.prepareOpts.apply(this,arguments),i=this;return"select"===e.element.get(0).tagName.toLowerCase()?e.initSelection=function(t,e){var n=t.find("option").filter(function(){return this.selected&&!this.disabled});e(i.optionToData(n))}:"data"in e&&(e.initSelection=e.initSelection||function(i,n){var r=i.val(),a=null;e.query({matcher:function(t,i,n){var s=o(r,e.id(n));return s&&(a=n),s},callback:t.isFunction(n)?function(){n(a)}:t.noop})}),e},getPlaceholder:function(){return this.select&&this.getPlaceholderOption()===e?e:this.parent.getPlaceholder.apply(this,arguments)},setPlaceholder:function(){var t=this.getPlaceholder();if(this.isPlaceholderOptionSelected()&&t!==e){if(this.select&&this.getPlaceholderOption()===e)return;this.selection.find(".select2-chosen").html(this.opts.escapeMarkup(t)),this.selection.addClass("select2-default"),this.container.removeClass("select2-allowclear")}},postprocessResults:function(t,e,i){var n=0,r=this;if(this.findHighlightableChoices().each2(function(t,e){if(o(r.id(e.data("select2-data")),r.opts.element.val()))return n=t,!1}),!1!==i&&(!0===e&&n>=0?this.highlight(n):this.highlight(0)),!0===e){var a=this.opts.minimumResultsForSearch;a>=0&&this.showSearch(T(t.results)>=a)}},showSearch:function(e){this.showSearchInput!==e&&(this.showSearchInput=e,this.dropdown.find(".select2-search").toggleClass("select2-search-hidden",!e),this.dropdown.find(".select2-search").toggleClass("select2-offscreen",!e),t(this.dropdown,this.container).toggleClass("select2-with-searchbox",e))},onSelect:function(t,e){if(this.triggerSelect(t)){var i=this.opts.element.val(),n=this.data();this.opts.element.val(this.id(t)),this.updateSelection(t),this.opts.element.trigger({type:"select2-selected",val:this.id(t),choice:t}),this.nextSearchTerm=this.opts.nextSearchTerm(t,this.search.val()),this.close(),e&&e.noFocus||!this.opts.shouldFocusInput(this)||this.focusser.focus(),o(i,this.id(t))||this.triggerChange({added:t,removed:n})}},updateSelection:function(t){var i,n,r=this.selection.find(".select2-chosen");this.selection.data("select2-data",t),r.empty(),null!==t&&(i=this.opts.formatSelection(t,r,this.opts.escapeMarkup)),i!==e&&r.append(i),n=this.opts.formatSelectionCssClass(t,r),n!==e&&r.addClass(n),this.selection.removeClass("select2-default"),this.opts.allowClear&&this.getPlaceholder()!==e&&this.container.addClass("select2-allowclear")},val:function(){var t,i=!1,n=null,r=this,a=this.data();if(0===arguments.length)return this.opts.element.val();if(t=arguments[0],arguments.length>1&&(i=arguments[1]),this.select)this.select.val(t).find("option").filter(function(){return this.selected}).each2(function(t,e){return n=r.optionToData(e),!1}),this.updateSelection(n),this.setPlaceholder(),i&&this.triggerChange({added:n,removed:a});else{if(!t&&0!==t)return void this.clear(i);if(this.opts.initSelection===e)throw new Error("cannot call val() if initSelection() is not defined");this.opts.element.val(t),this.opts.initSelection(this.opts.element,function(t){r.opts.element.val(t?r.id(t):""),r.updateSelection(t),r.setPlaceholder(),i&&r.triggerChange({added:t,removed:a})})}},clearSearch:function(){this.search.val(""),this.focusser.val("")},data:function(t){var i,n=!1;if(0===arguments.length)return i=this.selection.data("select2-data"),i==e&&(i=null),i;arguments.length>1&&(n=arguments[1]),t?(i=this.data(),this.opts.element.val(t?this.id(t):""),this.updateSelection(t),n&&this.triggerChange({added:t,removed:i})):this.clear(n)}}),j=E($,{createContainer:function(){return t(document.createElement("div")).attr({class:"select2-container select2-container-multi"}).html(["<ul class='select2-choices'>","  <li class='select2-search-field'>","    <label for='' class='select2-offscreen'></label>","    <input type='text' autocomplete='off' autocorrect='off' autocapitalize='off' spellcheck='false' class='select2-input'>","  </li>","</ul>","<div class='select2-drop select2-drop-multi select2-display-none'>","   <ul class='select2-results'>","   </ul>","</div>"].join(""))},prepareOpts:function(){var e=this.parent.prepareOpts.apply(this,arguments),i=this;return"select"===e.element.get(0).tagName.toLowerCase()?e.initSelection=function(t,e){var n=[];t.find("option").filter(function(){return this.selected&&!this.disabled}).each2(function(t,e){n.push(i.optionToData(e))}),e(n)}:"data"in e&&(e.initSelection=e.initSelection||function(i,n){var r=s(i.val(),e.separator),a=[];e.query({matcher:function(i,n,s){var l=t.grep(r,function(t){return o(t,e.id(s))}).length;return l&&a.push(s),l},callback:t.isFunction(n)?function(){for(var t=[],i=0;i<r.length;i++)for(var s=r[i],l=0;l<a.length;l++){var u=a[l];if(o(s,e.id(u))){t.push(u),a.splice(l,1);break}}n(t)}:t.noop})}),e},selectChoice:function(t){var e=this.container.find(".select2-search-choice-focus");e.length&&t&&t[0]==e[0]||(e.length&&this.opts.element.trigger("choice-deselected",e),e.removeClass("select2-search-choice-focus"),t&&t.length&&(this.close(),t.addClass("select2-search-choice-focus"),this.opts.element.trigger("choice-selected",t)))},destroy:function(){t("label[for='"+this.search.attr("id")+"']").attr("for",this.opts.element.attr("id")),this.parent.destroy.apply(this,arguments),M.call(this,"searchContainer","selection")},initContainer:function(){var e,i=".select2-choices";this.searchContainer=this.container.find(".select2-search-field"),this.selection=e=this.container.find(i);var n=this;this.selection.on("click",".select2-search-choice:not(.select2-locked)",function(e){n.search[0].focus(),n.selectChoice(t(this))}),this.search.attr("id","s2id_autogen"+P()),this.search.prev().text(t("label[for='"+this.opts.element.attr("id")+"']").text()).attr("for",this.search.attr("id")),this.search.on("input paste",this.bind(function(){this.search.attr("placeholder")&&0==this.search.val().length||this.isInterfaceEnabled()&&(this.opened()||this.open())})),this.search.attr("tabindex",this.elementTabIndex),this.keydowns=0,this.search.on("keydown",this.bind(function(t){if(this.isInterfaceEnabled()){++this.keydowns;var i=e.find(".select2-search-choice-focus"),n=i.prev(".select2-search-choice:not(.select2-locked)"),r=i.next(".select2-search-choice:not(.select2-locked)"),a=p(this.search);if(i.length&&(t.which==O.LEFT||t.which==O.RIGHT||t.which==O.BACKSPACE||t.which==O.DELETE||t.which==O.ENTER)){var o=i;return t.which==O.LEFT&&n.length?o=n:t.which==O.RIGHT?o=r.length?r:null:t.which===O.BACKSPACE?this.unselect(i.first())&&(this.search.width(10),o=n.length?n:r):t.which==O.DELETE?this.unselect(i.first())&&(this.search.width(10),o=r.length?r:null):t.which==O.ENTER&&(o=null),this.selectChoice(o),g(t),void(o&&o.length||this.open())}if((t.which===O.BACKSPACE&&1==this.keydowns||t.which==O.LEFT)&&0==a.offset&&!a.length)return this.selectChoice(e.find(".select2-search-choice:not(.select2-locked)").last()),void g(t);if(this.selectChoice(null),this.opened())switch(t.which){case O.UP:case O.DOWN:return this.moveHighlight(t.which===O.UP?-1:1),void g(t);case O.ENTER:return this.selectHighlighted(),void g(t);case O.TAB:return this.selectHighlighted({noFocus:!0}),void this.close();case O.ESC:return this.cancel(t),void g(t)}if(t.which!==O.TAB&&!O.isControl(t)&&!O.isFunctionKey(t)&&t.which!==O.BACKSPACE&&t.which!==O.ESC){if(t.which===O.ENTER){if(!1===this.opts.openOnEnter)return;if(t.altKey||t.ctrlKey||t.shiftKey||t.metaKey)return}this.open(),t.which!==O.PAGE_UP&&t.which!==O.PAGE_DOWN||g(t),t.which===O.ENTER&&g(t)}}})),this.search.on("keyup",this.bind(function(t){this.keydowns=0,this.resizeSearch()})),this.search.on("blur",this.bind(function(e){this.container.removeClass("select2-container-active"),this.search.removeClass("select2-focused"),this.selectChoice(null),this.opened()||this.clearSearch(),e.stopImmediatePropagation(),this.opts.element.trigger(t.Event("select2-blur"))})),this.container.on("click",i,this.bind(function(e){this.isInterfaceEnabled()&&(t(e.target).closest(".select2-search-choice").length>0||(this.selectChoice(null),this.clearPlaceholder(),this.container.hasClass("select2-container-active")||this.opts.element.trigger(t.Event("select2-focus")),this.open(),this.focusSearch(),e.preventDefault()))})),this.container.on("focus",i,this.bind(function(){this.isInterfaceEnabled()&&(this.container.hasClass("select2-container-active")||this.opts.element.trigger(t.Event("select2-focus")),this.container.addClass("select2-container-active"),this.dropdown.addClass("select2-drop-active"),this.clearPlaceholder())})),this.initContainerWidth(),this.opts.element.addClass("select2-offscreen"),this.clearSearch()},enableInterface:function(){this.parent.enableInterface.apply(this,arguments)&&this.search.prop("disabled",!this.isInterfaceEnabled())},initSelection:function(){if(""===this.opts.element.val()&&""===this.opts.element.text()&&(this.updateSelection([]),this.close(),this.clearSearch()),this.select||""!==this.opts.element.val()){var t=this;this.opts.initSelection.call(null,this.opts.element,function(i){i!==e&&null!==i&&(t.updateSelection(i),t.close(),t.clearSearch())})}},clearSearch:function(){var t=this.getPlaceholder(),i=this.getMaxSearchWidth();t!==e&&0===this.getVal().length&&!1===this.search.hasClass("select2-focused")?(this.search.val(t).addClass("select2-default"),this.search.width(i>0?i:this.container.css("width"))):this.search.val("").width(10)},clearPlaceholder:function(){this.search.hasClass("select2-default")&&this.search.val("").removeClass("select2-default")},opening:function(){this.clearPlaceholder(),this.resizeSearch(),this.parent.opening.apply(this,arguments),this.focusSearch(),""===this.search.val()&&this.nextSearchTerm!=e&&(this.search.val(this.nextSearchTerm),this.search.select()),this.updateResults(!0),this.opts.shouldFocusInput(this)&&this.search.focus(),this.opts.element.trigger(t.Event("select2-open"))},close:function(){this.opened()&&this.parent.close.apply(this,arguments)},focus:function(){this.close(),this.search.focus()},isFocused:function(){return this.search.hasClass("select2-focused")},updateSelection:function(e){var i=[],n=[],a=this;t(e).each(function(){r(a.id(this),i)<0&&(i.push(a.id(this)),n.push(this))}),e=n,this.selection.find(".select2-search-choice").remove(),t(e).each(function(){a.addSelectedChoice(this)}),a.postprocessResults()},tokenize:function(){var t=this.search.val();null!=(t=this.opts.tokenizer.call(this,t,this.data(),this.bind(this.onSelect),this.opts))&&t!=e&&(this.search.val(t),t.length>0&&this.open())},onSelect:function(t,i){this.triggerSelect(t)&&""!==t.text&&(this.addSelectedChoice(t),this.opts.element.trigger({type:"selected",val:this.id(t),choice:t}),this.nextSearchTerm=this.opts.nextSearchTerm(t,this.search.val()),this.moveHighlight(1),!this.select&&this.opts.closeOnSelect||this.postprocessResults(t,!1,!0===this.opts.closeOnSelect),this.opts.closeOnSelect?(this.clearSearch(),this.updateResults(),this.close(),this.search.width(10)):this.countSelectableResults()>0?(this.search.width(10),this.resizeSearch(),this.getMaximumSelectionSize()>0&&this.val().length>=this.getMaximumSelectionSize()?this.updateResults(!0):this.nextSearchTerm!=e&&(this.search.val(this.nextSearchTerm),this.updateResults(),this.search.select()),this.positionDropdown()):(this.close(),this.search.width(10)),this.triggerChange({added:t}),i&&i.noFocus||this.focusSearch())},cancel:function(){this.close(),this.focusSearch()},addSelectedChoice:function(i){var n,r,a=!i.locked,o=t("<li class='select2-search-choice'>    <div></div>    <a href='#' class='select2-search-choice-close' tabindex='-1'></a></li>"),s=t("<li class='select2-search-choice select2-locked'><div></div></li>"),l=a?o:s,u=this.id(i),c=this.getVal();n=this.opts.formatSelection(i,l.find("div"),this.opts.escapeMarkup),n!=e&&l.find("div").replaceWith("<div>"+n+"</div>"),r=this.opts.formatSelectionCssClass(i,l.find("div")),r!=e&&l.addClass(r),a&&l.find(".select2-search-choice-close").on("mousedown",g).on("click dblclick",this.bind(function(e){this.isInterfaceEnabled()&&(this.unselect(t(e.target)),this.selection.find(".select2-search-choice-focus").removeClass("select2-search-choice-focus"),g(e),this.close(),this.focusSearch())})).on("focus",this.bind(function(){this.isInterfaceEnabled()&&(this.container.addClass("select2-container-active"),this.dropdown.addClass("select2-drop-active"))})),l.data("select2-data",i),l.insertBefore(this.searchContainer),c.push(u),this.setVal(c)},unselect:function(e){var i,n,a=this.getVal();if(e=e.closest(".select2-search-choice"),0===e.length)throw"Invalid argument: "+e+". Must be .select2-search-choice";if(i=e.data("select2-data")){var o=t.Event("select2-removing");if(o.val=this.id(i),o.choice=i,this.opts.element.trigger(o),o.isDefaultPrevented())return!1;for(;(n=r(this.id(i),a))>=0;)a.splice(n,1),this.setVal(a),this.select&&this.postprocessResults();return e.remove(),this.opts.element.trigger({type:"select2-removed",val:this.id(i),choice:i}),this.triggerChange({removed:i}),!0}},postprocessResults:function(t,e,i){var n=this.getVal(),a=this.results.find(".select2-result"),o=this.results.find(".select2-result-with-children"),s=this;a.each2(function(t,e){r(s.id(e.data("select2-data")),n)>=0&&(e.addClass("select2-selected"),e.find(".select2-result-selectable").addClass("select2-selected"))}),o.each2(function(t,e){e.is(".select2-result-selectable")||0!==e.find(".select2-result-selectable:not(.select2-selected)").length||e.addClass("select2-selected")}),-1==this.highlight()&&!1!==i&&s.highlight(0),!this.opts.createSearchChoice&&!a.filter(".select2-result:not(.select2-selected)").length>0&&(!t||t&&!t.more&&0===this.results.find(".select2-no-results").length)&&k(s.opts.formatNoMatches,"formatNoMatches")&&this.results.append("<li class='select2-no-results'>"+S(s.opts.formatNoMatches,s.opts.element,s.search.val())+"</li>")},getMaxSearchWidth:function(){return this.selection.width()-l(this.search)},resizeSearch:function(){var t,e,i,n,r,a=l(this.search);t=v(this.search)+10,e=this.search.offset().left,i=this.selection.width(),n=this.selection.offset().left,r=i-(e-n)-a,r<t&&(r=i-a),r<40&&(r=i-a),r<=0&&(r=t),this.search.width(Math.floor(r))},getVal:function(){var t;return this.select?(t=this.select.val(),null===t?[]:t):(t=this.opts.element.val(),s(t,this.opts.separator))},setVal:function(e){var i;this.select?this.select.val(e):(i=[],t(e).each(function(){r(this,i)<0&&i.push(this)}),this.opts.element.val(0===i.length?"":i.join(this.opts.separator)))},buildChangeDetails:function(t,e){for(var e=e.slice(0),t=t.slice(0),i=0;i<e.length;i++)for(var n=0;n<t.length;n++)o(this.opts.id(e[i]),this.opts.id(t[n]))&&(e.splice(i,1),i>0&&i--,t.splice(n,1),n--);return{added:e,removed:t}},val:function(i,n){var r,a=this;if(0===arguments.length)return this.getVal();if(r=this.data(),r.length||(r=[]),!i&&0!==i)return this.opts.element.val(""),this.updateSelection([]),this.clearSearch(),void(n&&this.triggerChange({added:this.data(),removed:r}));if(this.setVal(i),this.select)this.opts.initSelection(this.select,this.bind(this.updateSelection)),n&&this.triggerChange(this.buildChangeDetails(r,this.data()));else{if(this.opts.initSelection===e)throw new Error("val() cannot be called if initSelection() is not defined");this.opts.initSelection(this.opts.element,function(e){var i=t.map(e,a.id);a.setVal(i),a.updateSelection(e),a.clearSearch(),n&&a.triggerChange(a.buildChangeDetails(r,a.data()))})}this.clearSearch()},onSortStart:function(){if(this.select)throw new Error("Sorting of elements is not supported when attached to <select>. Attach to <input type='hidden'/> instead.");this.search.width(0),this.searchContainer.hide()},onSortEnd:function(){var e=[],i=this;this.searchContainer.show(),this.searchContainer.appendTo(this.searchContainer.parent()),this.resizeSearch(),this.selection.find(".select2-search-choice").each(function(){e.push(i.opts.id(t(this).data("select2-data")))}),this.setVal(e),this.triggerChange()},data:function(e,i){var n,r,a=this;if(0===arguments.length)return this.selection.children(".select2-search-choice").map(function(){return t(this).data("select2-data")}).get();r=this.data(),e||(e=[]),n=t.map(e,function(t){return a.opts.id(t)}),this.setVal(n),this.updateSelection(e),this.clearSearch(),i&&this.triggerChange(this.buildChangeDetails(r,this.data()))}}),t.fn.select2=function(){var i,n,a,o,s,l=Array.prototype.slice.call(arguments,0),u=["val","destroy","opened","open","close","focus","isFocused","container","dropdown","onSortStart","onSortEnd","enable","disable","readonly","positionDropdown","data","search"],c=["opened","isFocused","container","dropdown"],h=["val","data"],d={search:"externalSearch"};return this.each(function(){if(0===l.length||"object"==typeof l[0])i=0===l.length?{}:t.extend({},l[0]),i.element=t(this),"select"===i.element.get(0).tagName.toLowerCase()?s=i.element.prop("multiple"):(s=i.multiple||!1,"tags"in i&&(i.multiple=s=!0)),n=s?new window.Select2.class.multi:new window.Select2.class.single,n.init(i);else{if("string"!=typeof l[0])throw"Invalid arguments to select2 plugin: "+l;if(r(l[0],u)<0)throw"Unknown method: "+l[0];if(o=e,(n=t(this).data("select2"))===e)return;if(a=l[0],"container"===a?o=n.container:"dropdown"===a?o=n.dropdown:(d[a]&&(a=d[a]),o=n[a].apply(n,l.slice(1))),r(l[0],c)>=0||r(l[0],h)>=0&&1==l.length)return!1}}),o===e?this:o},t.fn.select2.defaults={width:"copy",loadMorePadding:0,closeOnSelect:!0,openOnEnter:!0,containerCss:{},dropdownCss:{},containerCssClass:"",dropdownCssClass:"",formatResult:function(t,e,i,n){var r=[];return y(t.text,i.term,r,n),r.join("")},formatSelection:function(t,i,n){return t?n(t.text):e},sortResults:function(t,e,i){return t},formatResultCssClass:function(t){return t.css},formatSelectionCssClass:function(t,i){return e},minimumResultsForSearch:0,minimumInputLength:0,maximumInputLength:null,maximumSelectionSize:0,id:function(t){return t==e?null:t.id},matcher:function(t,e){return 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n.ajax({url:Galaxy.root+"visualization/save",type:"POST",dataType:"json",data:{id:x.vis_id,title:x.config.get_value("name"),dbkey:x.dbkey,type:"trackster",vis_json:JSON.stringify(i)}}).success(function(t){Galaxy.modal.hide(),x.vis_id=t.vis_id,x.has_changes=!1,window.history.pushState({},"",t.url+window.location.hash)}).error(function(){Galaxy.modal.show({title:(0,o.default)("Could Not Save"),body:"Could not save visualization. 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d.default.TrackBrowserRouter(e),t.history.start()},init_keyboard_nav:function(t){n(document).keyup(function(e){if(!n(e.srcElement).is(":input"))switch(e.which){case 37:t.move_fraction(.25);break;case 38:Math.round(t.viewport_container.height()/15);t.viewport_container.scrollTop(t.viewport_container.scrollTop()-20);break;case 39:t.move_fraction(-.25);break;case 40:Math.round(t.viewport_container.height()/15);t.viewport_container.scrollTop(t.viewport_container.scrollTop()+20)}})},handle_unsaved_changes:function(t){if(t.has_changes){var e=this;Galaxy.modal.show({title:(0,o.default)("Close visualization"),body:"There are unsaved changes to your visualization which will be lost if you do not save them.",buttons:{Cancel:function(){Galaxy.modal.hide()},"Leave without Saving":function(){n(window).off("beforeunload"),window.location=Galaxy.root+"visualization"},Save:function(){n.when(e.save_viz()).then(function(){window.location=Galaxy.root+"visualization"})}}})}else window.location=Galaxy.root+"visualization"}}),S=t.View.extend({initialize:function(){w=new k(Galaxy.root),w.createButtonMenu(),w.buttonMenu.$el.attr("style","float: right"),n("#center .unified-panel-header-inner").append(w.buttonMenu.$el),n("#right .unified-panel-title").append("Bookmarks"),n("#right .unified-panel-icons").append("<a id='add-bookmark-button' class='icon-button menu-button plus-button' href='javascript:void(0);' title='Add bookmark'></a>"),n("#right-border").click(function(){x.resize_window()}),window.force_right_panel("hide"),window.galaxy_config.app.id?this.view_existing():m.default.get("dataset_id")?this.choose_existing_or_new():this.view_new()},choose_existing_or_new:function(){var t=this,e=m.default.get("dbkey"),i={},n={dbkey:e,dataset_id:m.default.get("dataset_id"),hda_ldda:m.default.get("hda_ldda"),gene_region:m.default.get("gene_region")};e&&(i["f-dbkey"]=e),Galaxy.modal.show({title:"View Data in a New or Saved Visualization?",body:"<p><ul style='list-style: 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t=window.galaxy_config.app.viz_config;x=w.create_visualization({container:n("#center .unified-panel-body"),name:t.title,vis_id:t.vis_id,dbkey:t.dbkey},t.viewport,t.tracks,t.bookmarks,!0),this.init_editor()},view_new:function(){var t=this;n.ajax({url:Galaxy.root+"api/genomes?chrom_info=True",data:{},error:function(){alert("Couldn't create new browser.")},success:function(e){Galaxy.modal.show({title:(0,o.default)("New Visualization"),body:t.template_view_new(e),buttons:{Cancel:function(){window.location=Galaxy.root+"visualizations/list"},Create:function(){t.create_browser(n("#new-title").val(),n("#new-dbkey").val()),Galaxy.modal.hide()}}});var i=e.map(function(t){return t[1]});window.galaxy_config.app.default_dbkey&&l.contains(i,window.galaxy_config.app.default_dbkey)&&n("#new-dbkey").val(window.galaxy_config.app.default_dbkey),n("#new-title").focus(),n("select[name='dbkey']").select2(),n("#overlay").css("overflow","auto")}})},template_view_new:function(t){for(var e='<form id="new-browser-form" action="javascript:void(0);" method="post" onsubmit="return false;"><div class="form-row"><label for="new-title">Browser name:</label><div class="form-row-input"><input type="text" name="title" id="new-title" value="Unnamed"></input></div><div style="clear: both;"></div></div><div class="form-row"><label for="new-dbkey">Reference genome build (dbkey): </label><div class="form-row-input"><select name="dbkey" id="new-dbkey">',i=0;i<t.length;i++)e+='<option value="'+t[i][1]+'">'+t[i][0]+"</option>";return e+='</select></div><div style="clear: both;"></div></div><div class="form-row">Is the build not listed here? <a href="'+Galaxy.root+'custom_builds">Add a Custom Build</a></div></form>'},create_browser:function(t,e){n(document).trigger("convert_to_values"),x=w.create_visualization({container:n("#center .unified-panel-body"),name:t,dbkey:e},window.galaxy_config.app.gene_region),this.init_editor(),x.editor=!0},init_editor:function(){n("#center .unified-panel-title").text(x.config.get_value("name")+" ("+x.dbkey+")"),window.galaxy_config.app.add_dataset&&n.ajax({url:Galaxy.root+"api/datasets/"+window.galaxy_config.app.add_dataset,data:{hda_ldda:"hda",data_type:"track_config"},dataType:"json",success:function(t){x.add_drawable(c.default.object_from_template(t,x,x))}}),n("#add-bookmark-button").click(function(){var t=x.chrom+":"+x.low+"-"+x.high;return w.add_bookmark(t,"Bookmark description",!0)}),w.init_keyboard_nav(x),n(window).on("beforeunload",function(){if(x.has_changes)return"There are unsaved changes to your visualization that will be lost if you leave this page."})}});e.default={TracksterUI:k,GalaxyApp:S}}).call(e,i(2),i(0))},function(t,e,i){"use strict";(function(t,n){function r(t){return t&&t.__esModule?t:{default:t}}function a(t,e){e||(e=0);var i=Math.pow(10,e);return Math.round(t*i)/i}function o(e){var i=t.Deferred();return t.ajax({type:"HEAD",url:e,beforeSend:function(t){t.setRequestHeader("Range","bytes=0-10")},success:function(t,e,n){i.resolve(206===n.status)}}),i}Object.defineProperty(e,"__esModule",{value:!0});var s=i(3),l=r(s),u=i(1),c=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var i in t)Object.prototype.hasOwnProperty.call(t,i)&&(e[i]=t[i]);return e.default=t,e}(u),h=i(24),d=r(h),f=i(161),p=r(f),g=i(45),m=r(g),v=i(162),_=r(v),y=i(163),b=r(y),w=i(164),x=r(w),C=i(23),k=r(C),S=i(80),T=r(S),A=i(46),M=r(A),E=i(245),O=r(E);i(15);var $=c.extend,D={},j=function(t,e){D[t.attr("id")]=e},P=function(e,i,n,r){n=".group",D[e.attr("id")]=r,e.bind("drag",{handle:"."+i,relative:!0},function(e,i){var r,a,o,s,l,u=(t(this),t(this).parent()),c=u.children(".track,.group"),h=D[t(this).attr("id")];if(a=t(this).parents(n),0!==a.length){o=a.position().top,s=o+a.outerHeight();var d=D[a.attr("id")];if(i.offsetY<o)return t(this).insertBefore(a),d.remove_drawable(h),void d.container.add_drawable_before(h,d);if(i.offsetY>s)return t(this).insertAfter(a),d.remove_drawable(h),void d.container.add_drawable(h)}for(a=null,l=0;l<c.length;l++)if(r=t(c.get(l)),o=r.position().top,s=o+r.outerHeight(),r.is(n)&&this!==r.get(0)&&i.offsetY>=o&&i.offsetY<=s)return i.offsetY-o<s-i.offsetY?r.find(".content-div").prepend(this):r.find(".content-div").append(this),h.container&&h.container.remove_drawable(h),void D[r.attr("id")].add_drawable(h);for(l=0;l<c.length&&(r=t(c.get(l)),!(i.offsetY<r.position().top)||r.hasClass("reference-track")||r.hasClass("intro"));l++);l===c.length?this!==c.get(l-1)&&(u.append(this),D[u.attr("id")].move_drawable(h,l)):this!==c.get(l)&&(t(this).insertBefore(c.get(l)),D[u.attr("id")].move_drawable(h,i.deltaY>0?l-1:l))}).bind("dragstart",function(){t(this).addClass("dragging")}).bind("dragend",function(){t(this).removeClass("dragging")})},R="A converter for this dataset is not installed. Please check your datatypes_conf.xml file.",I=["Histogram","Line","Filled","Intensity"],N=function t(e,i,n){if(t.id_counter||(t.id_counter=0),this.id=t.id_counter++,this.view=e,this.container=i,this.drag_handle_class=n.drag_handle_class,this.is_overview=!1,this.action_icons={},this.config=M.default.ConfigSettingCollection.from_models_and_saved_values(this.config_params,n.prefs),this.config.get_value("name")||this.config.set_value("name",n.name),this.config_onchange&&this.config.on("change",this.config_onchange,this),this.container_div=this.build_container_div(),this.header_div=null,!1!==n.header){var r=new p.default.TrackHeaderView({model:this,id:this.id});this.header_div=r.$el,this.container_div.append(this.header_div);var a=r.icons_div;this.action_icons=r.action_icons,this.container_div.hover(function(){a.show()},function(){a.hide()})}};N.prototype.action_icons_def=[{name:"toggle_icon",title:"Hide/show content",css_class:"toggle",on_click_fn:function(t){t.config.get_value("content_visible")?(t.action_icons.toggle_icon.addClass("toggle-expand").removeClass("toggle"),t.hide_contents(),t.config.set_value("content_visible",!1)):(t.action_icons.toggle_icon.addClass("toggle").removeClass("toggle-expand"),t.config.set_value("content_visible",!0),t.show_contents())}},{name:"settings_icon",title:(0,l.default)("Edit settings"),css_class:"gear",on_click_fn:function(t){new M.default.ConfigSettingCollectionView({collection:t.config}).render_in_modal("Configure Track")}},{name:"remove_icon",title:(0,l.default)("Remove"),css_class:"remove-icon",on_click_fn:function(e){t(".tooltip").remove(),e.remove()}}],$(N.prototype,{config_params:[{key:"name",label:"Name",type:"text",default_value:""},{key:"content_visible",type:"bool",default_value:!0,hidden:!0}],config_onchange:function(){},init:function(){},changed:function(){this.view.changed()},can_draw:function(){return!(!this.enabled||!this.config.get_value("content_visible"))},request_draw:function(){},_draw:function(t){},to_dict:function(){},set_name:function(t){this.old_name=this.config.get_value("name"),this.config.set_value("name",t)},revert_name:function(){this.old_name&&this.config.set_value("name",this.old_name)},remove:function(){this.changed(),this.container.remove_drawable(this);var e=this.view;this.container_div.hide(0,function(){t(this).remove(),e.update_intro_div()})},build_container_div:function(){},update_icons:function(){},hide_contents:function(){},show_contents:function(){},get_drawables:function(){}});var L=function(t,e,i){N.call(this,t,e,i),this.obj_type=i.obj_type,this.drawables=[]};$(L.prototype,N.prototype,{unpack_drawables:function(t){this.drawables=[];for(var e,i=0;i<t.length;i++)e=at(t[i],this.view,this),this.add_drawable(e)},init:function(){for(var t=0;t<this.drawables.length;t++)this.drawables[t].init()},_draw:function(t){for(var e=0;e<this.drawables.length;e++)this.drawables[e]._draw(t)},to_dict:function(){for(var t=[],e=0;e<this.drawables.length;e++)t.push(this.drawables[e].to_dict());return{prefs:this.config.to_key_value_dict(),obj_type:this.obj_type,drawables:t}},add_drawable:function(t){this.drawables.push(t),t.container=this,this.changed()},add_drawable_before:function(t,e){this.changed();var i=this.drawables.indexOf(e);return-1!==i&&(this.drawables.splice(i,0,t),!0)},replace_drawable:function(t,e,i){var n=this.drawables.indexOf(t);return-1!==n&&(this.drawables[n]=e,i&&t.container_div.replaceWith(e.container_div),this.changed()),n},remove_drawable:function(t){var e=this.drawables.indexOf(t);return-1!==e&&(this.drawables.splice(e,1),t.container=null,this.changed(),!0)},move_drawable:function(t,e){var i=this.drawables.indexOf(t);return-1!==i&&(this.drawables.splice(i,1),this.drawables.splice(e,0,t),this.changed(),!0)},get_drawables:function(){return this.drawables},get_tracks:function(t){for(var e,i=this.drawables.slice(0),n=[];0!==i.length;)e=i.shift(),e instanceof t?n.push(e):e.drawables&&(i=i.concat(e.drawables));return n}});var z=function(e,i,n){if($(n,{obj_type:"DrawableGroup",drag_handle_class:"group-handle"}),L.call(this,e,i,n),this.content_div=t("<div/>").addClass("content-div").attr("id","group_"+this.id+"_content_div").appendTo(this.container_div),j(this.container_div,this),j(this.content_div,this),P(this.container_div,this.drag_handle_class,".group",this),this.filters_manager=new x.default.FiltersManager(this),this.header_div.after(this.filters_manager.parent_div),this.filters_manager.parent_div.after(t("<div style='clear: both'/>")),this.saved_filters_managers=[],"drawables"in n&&this.unpack_drawables(n.drawables),"filters"in n){var r=this.filters_manager;this.filters_manager=new x.default.FiltersManager(this,n.filters),r.parent_div.replaceWith(this.filters_manager.parent_div),n.filters.visible&&this.setup_multitrack_filtering()}};$(z.prototype,N.prototype,L.prototype,{action_icons_def:[N.prototype.action_icons_def[0],N.prototype.action_icons_def[1],{name:"composite_icon",title:(0,l.default)("Show composite track"),css_class:"layers-stack",on_click_fn:function(e){t(".tooltip").remove(),e.show_composite_track()}},{name:"filters_icon",title:(0,l.default)("Filters"),css_class:"ui-slider-050",on_click_fn:function(t){t.filters_manager.visible()?(t.filters_manager.clear_filters(),t._restore_filter_managers()):(t.setup_multitrack_filtering(),t.request_draw({clear_tile_cache:!0})),t.filters_manager.toggle()}},N.prototype.action_icons_def[2]],build_container_div:function(){var e=t("<div/>").addClass("group").attr("id","group_"+this.id);return this.container&&this.container.content_div.append(e),e},hide_contents:function(){this.tiles_div.hide()},show_contents:function(){this.tiles_div.show(),this.request_draw()},update_icons:function(){var e=this.drawables.length;if(0===e)this.action_icons.composite_icon.hide(),this.action_icons.filters_icon.hide();else if(1===e)this.action_icons.composite_icon.toggle(this.drawables[0]instanceof K),this.action_icons.filters_icon.hide();else{var i,n,r,a=this.drawables[0].get_type(),o=0;for(i=0;i<e;i++){if(r=this.drawables[i],r.get_type()!==a){can_composite=!1;break}r instanceof et&&o++}if(this.drawables[0]instanceof Z?this.action_icons.composite_icon.show():(this.action_icons.composite_icon.hide(),t(".tooltip").remove()),o>1&&o===this.drawables.length){var s,l={};for(r=this.drawables[0],n=0;n<r.filters_manager.filters.length;n++)s=r.filters_manager.filters[n],l[s.name]=[s];for(i=1;i<this.drawables.length;i++)for(r=this.drawables[i],n=0;n<r.filters_manager.filters.length;n++)s=r.filters_manager.filters[n],s.name in l&&l[s.name].push(s);this.filters_manager.remove_all();var u,c;for(var h in l)u=l[h],u.length===o&&(c=new x.default.NumberFilter({name:u[0].name,index:u[0].index}),this.filters_manager.add_filter(c));this.action_icons.filters_icon.toggle(this.filters_manager.filters.length>0)}else this.action_icons.filters_icon.hide()}},_restore_filter_managers:function(){for(var t=0;t<this.drawables.length;t++)this.drawables[t].filters_manager=this.saved_filters_managers[t];this.saved_filters_managers=[]},setup_multitrack_filtering:function(){if(this.filters_manager.filters.length>0){this.saved_filters_managers=[];for(var t=0;t<this.drawables.length;t++){var e=this.drawables[t];this.saved_filters_managers.push(e.filters_manager),e.filters_manager=this.filters_manager}}this.filters_manager.init_filters()},show_composite_track:function(){var t=new K(this.view,this.view,{name:this.config.get_value("name"),drawables:this.drawables});this.container.replace_drawable(this,t,!0);t.request_draw()},add_drawable:function(t){L.prototype.add_drawable.call(this,t),this.update_icons()},remove_drawable:function(t){L.prototype.remove_drawable.call(this,t),this.update_icons()},to_dict:function(){this.filters_manager.visible()&&this._restore_filter_managers();var t=$(L.prototype.to_dict.call(this),{filters:this.filters_manager.to_dict()});return this.filters_manager.visible()&&this.setup_multitrack_filtering(),t},request_draw:function(t){c.each(this.drawables,function(e){e.request_draw(t)})}});var H=n.View.extend({initialize:function(t){$(t,{obj_type:"View"}),L.call(this,"View",t.container,t),this.chrom=null,this.vis_id=t.vis_id,this.dbkey=t.dbkey,this.stand_alone=void 0===t.stand_alone||t.stand_alone,this.label_tracks=[],this.tracks_to_be_redrawn=[],this.max_low=0,this.max_high=0,this.zoom_factor=3,this.min_separation=30,this.has_changes=!1,this.load_chroms_deferred=null,this.render(),this.canvas_manager=new d.default.CanvasManager(this.container.get(0).ownerDocument),this.reset(),this.config=M.default.ConfigSettingCollection.from_models_and_saved_values([{key:"name",label:"Name",type:"text",default_value:""},{key:"a_color",label:"A Color",type:"color",default_value:"#FF0000"},{key:"c_color",label:"C Color",type:"color",default_value:"#00FF00"},{key:"g_color",label:"G Color",type:"color",default_value:"#0000FF"},{key:"t_color",label:"T Color",type:"color",default_value:"#FF00FF"},{key:"n_color",label:"N Color",type:"color",default_value:"#AAAAAA"}],{name:t.name})},render:function(){this.requested_redraw=!1;var e=this.container,i=this;this.top_container=t("<div/>").addClass("top-container").appendTo(e),this.browser_content_div=t("<div/>").addClass("content").appendTo(e),this.bottom_container=t("<div/>").addClass("bottom-container").appendTo(e),this.top_labeltrack=t("<div/>").addClass("top-labeltrack").appendTo(this.top_container),this.viewport_container=t("<div/>").addClass("viewport-container").attr("id","viewport-container").appendTo(this.browser_content_div),this.content_div=this.viewport_container,j(this.viewport_container,i),this.intro_div=t("<div/>").addClass("intro").appendTo(this.viewport_container);t("<div/>").text("Add Datasets to Visualization").addClass("action-button").appendTo(this.intro_div).click(function(){d.default.select_datasets({dbkey:i.dbkey},function(t){c.each(t,function(t){i.add_drawable(at(t,i,i))})})});this.nav_container=t("<div/>").addClass("trackster-nav-container").prependTo(this.top_container),this.nav=t("<div/>").addClass("trackster-nav").appendTo(this.nav_container),this.stand_alone&&(this.nav_container.addClass("stand-alone"),this.nav.addClass("stand-alone")),this.overview=t("<div/>").addClass("overview").appendTo(this.bottom_container),this.overview_viewport=t("<div/>").addClass("overview-viewport").appendTo(this.overview),this.overview_close=t("<a/>").attr("title","Close overview").addClass("icon-button overview-close tooltip").hide().appendTo(this.overview_viewport),this.overview_highlight=t("<div/>").addClass("overview-highlight").hide().appendTo(this.overview_viewport),this.overview_box_background=t("<div/>").addClass("overview-boxback").appendTo(this.overview_viewport),this.overview_box=t("<div/>").addClass("overview-box").appendTo(this.overview_viewport),this.default_overview_height=this.overview_box.height(),this.nav_controls=t("<div/>").addClass("nav-controls").appendTo(this.nav),this.chrom_select=t("<select/>").attr({name:"chrom"}).addClass("chrom-nav").append("<option value=''>Loading</option>").appendTo(this.nav_controls);var n=function(e){"focusout"!==e.type&&13!==(e.keyCode||e.which)&&27!==(e.keyCode||e.which)||(27!==(e.keyCode||e.which)&&i.go_to(t(this).val()),t(this).hide(),t(this).val(""),i.location_span.show(),i.chrom_select.show()),e.stopPropagation()};this.nav_input=t("<input/>").addClass("nav-input").hide().bind("keyup focusout",n).appendTo(this.nav_controls),this.location_span=t("<span/>").addClass("location").attr("title","Click to change location").tooltip({placement:"bottom"}).appendTo(this.nav_controls),this.location_span.click(function(){i.location_span.hide(),i.chrom_select.hide(),i.nav_input.val(i.chrom+":"+i.low+"-"+i.high),i.nav_input.css("display","inline-block"),i.nav_input.select(),i.nav_input.focus(),i.nav_input.autocomplete({source:function(e,n){var r=[],a=t.map(i.get_tracks(et),function(t){return t.data_manager.search_features(e.term).success(function(t){r=r.concat(t)})});t.when.apply(t,a).done(function(){n(t.map(r,function(t){return{label:t[0],value:t[1]}}))})},minLength:2})}),void 0!==this.vis_id&&(this.hidden_input=t("<input/>").attr("type","hidden").val(this.vis_id).appendTo(this.nav_controls)),this.zo_link=t("<a/>").attr("id","zoom-out").attr("title","Zoom out").tooltip({placement:"bottom"}).click(function(){i.zoom_out()}).appendTo(this.nav_controls),this.zi_link=t("<a/>").attr("id","zoom-in").attr("title","Zoom in").tooltip({placement:"bottom"}).click(function(){i.zoom_in()}).appendTo(this.nav_controls),this.load_chroms_deferred=this.load_chroms({low:0}),this.chrom_select.bind("change",function(){i.change_chrom(i.chrom_select.val())}),this.browser_content_div.click(function(e){t(this).find("input").trigger("blur")}),this.browser_content_div.bind("dblclick",function(t){i.zoom_in(t.pageX,this.viewport_container)}),this.overview_box.bind("dragstart",function(t,e){this.current_x=e.offsetX}).bind("drag",function(t,e){var n=e.offsetX-this.current_x;this.current_x=e.offsetX;var r=Math.round(n/i.viewport_container.width()*(i.max_high-i.max_low));i.move_delta(-r)}),this.overview_close.click(function(){i.reset_overview()}),this.viewport_container.bind("draginit",function(t,e){if(t.clientX>i.viewport_container.width()-16)return!1}).bind("dragstart",function(t,e){e.original_low=i.low,e.current_height=t.clientY,e.current_x=e.offsetX}).bind("drag",function(e,n){var r=t(this),a=n.offsetX-n.current_x,o=r.scrollTop()-(e.clientY-n.current_height);r.scrollTop(o),n.current_height=e.clientY,n.current_x=n.offsetX;var s=Math.round(a/i.viewport_container.width()*(i.high-i.low));i.move_delta(s)}),this.top_labeltrack.bind("dragstart",function(e,n){return t("<div/>").addClass("zoom-area").css("height",i.browser_content_div.height()+i.top_labeltrack.height()+1).appendTo(t(this))}).bind("drag",function(e,n){t(n.proxy).css({left:Math.min(e.pageX,n.startX)-i.container.offset().left,width:Math.abs(e.pageX-n.startX)});var r=Math.min(e.pageX,n.startX)-i.container.offset().left,a=Math.max(e.pageX,n.startX)-i.container.offset().left,o=i.high-i.low,s=i.viewport_container.width();i.update_location(Math.round(r/s*o)+i.low,Math.round(a/s*o)+i.low)}).bind("dragend",function(e,n){var r=Math.min(e.pageX,n.startX),a=Math.max(e.pageX,n.startX),o=i.high-i.low,s=i.viewport_container.width(),l=i.low;i.low=Math.round(r/s*o)+l,i.high=Math.round(a/s*o)+l,t(n.proxy).remove(),i.request_redraw()}),this.add_label_track(new J(this,{content_div:this.top_labeltrack})),t(window).bind("resize",function(){this.resize_timer&&clearTimeout(this.resize_timer),this.resize_timer=setTimeout(function(){i.resize_window()},500)}),t(document).bind("redraw",function(){i.redraw()}),this.reset(),t(window).trigger("resize")},get_base_color:function(t){return this.config.get_value(t.toLowerCase()+"_color")||this.config.get_value("n_color")}});$(H.prototype,L.prototype,{changed:function(){this.has_changes=!0},update_intro_div:function(){this.intro_div.toggle(0===this.drawables.length)},trigger_navigate:function(t,e,i,n){if(this.timer&&clearTimeout(this.timer),n){var r=this;this.timer=setTimeout(function(){r.trigger("navigate",t+":"+e+"-"+i)},500)}else view.trigger("navigate",t+":"+e+"-"+i)},update_location:function(t,e){this.location_span.text(m.default.commatize(t)+" - "+m.default.commatize(e)),this.nav_input.val(this.chrom+":"+m.default.commatize(t)+"-"+m.default.commatize(e));var i=this.chrom_select.val();""!==i&&this.trigger_navigate(i,this.low,this.high,!0)},load_chroms:function(e){e.num=100;var i=this,n=t.Deferred();return t.ajax({url:Galaxy.root+"api/genomes/"+this.dbkey,data:e,dataType:"json",success:function(e){if(0!==e.chrom_info.length){if(e.reference){var r=new Q(i);i.add_label_track(r),i.reference_track=r}i.chrom_data=e.chrom_info,i.chrom_select.html(""),i.chrom_select.append(t('<option value="">Select Chrom/Contig</option>'));for(var a=0,o=i.chrom_data.length;a<o;a++){var s=i.chrom_data[a].chrom,l=t("<option>");l.text(s),l.val(s),i.chrom_select.append(l)}e.prev_chroms&&i.chrom_select.append(t('<option value="previous">Previous 100</option>')),e.next_chroms&&i.chrom_select.append(t('<option value="next">Next 100</option>')),i.chrom_start_index=e.start_index,n.resolve(e.chrom_info)}},error:function(){alert("Could not load chroms for this dbkey: "+i.dbkey)}}),n},change_chrom:function(e,i,n){var r=this;if(!r.chrom_data)return void r.load_chroms_deferred.then(function(){r.change_chrom(e,i,n)});if(e&&"None"!==e){if("previous"===e)return void r.load_chroms({low:this.chrom_start_index-100});if("next"===e)return void r.load_chroms({low:this.chrom_start_index+100});var a=t.grep(r.chrom_data,function(t,i){return t.chrom===e})[0];if(void 0===a)return void r.load_chroms({chrom:e},function(){r.change_chrom(e,i,n)});if(e!==r.chrom){r.chrom=e,r.chrom_select.val(r.chrom),r.max_high=a.len-1,r.reset();for(var o=0,s=r.drawables.length;o<s;o++){var l=r.drawables[o];l.init&&l.init()}r.reference_track&&r.reference_track.init()}void 0===i&&void 0===n?(r.low=0,r.high=r.max_high):(r.low=void 0!==i?Math.max(i,0):0,void 0===n?(r.low=Math.max(r.low-15,0),r.high=r.low+30):r.high=Math.min(n,r.max_high)),r.request_redraw()}},go_to:function(t){t=t.replace(/,/g,""),t=t.replace(/:|\-/g," ");var e=t.split(/\s+/),i=e[0],n=e[1]?parseInt(e[1],10):void 0,r=e[2]?parseInt(e[2],10):void 0;this.change_chrom(i,n,r)},move_fraction:function(t){var e=this,i=e.high-e.low;this.move_delta(t*i)},move_delta:function(t){var e=this,i=e.high-e.low;e.low-t<e.max_low?(e.low=e.max_low,e.high=e.max_low+i):e.high-t>e.max_high?(e.high=e.max_high,e.low=e.max_high-i):(e.high-=t,e.low-=t),e.request_redraw({data_fetch:!1}),this.redraw_on_move_fn&&clearTimeout(this.redraw_on_move_fn),this.redraw_on_move_fn=setTimeout(function(){e.request_redraw()},200);var n=e.chrom_select.val();this.trigger_navigate(n,e.low,e.high,!0)},add_drawable:function(t){L.prototype.add_drawable.call(this,t),t.init(),this.changed(),this.update_intro_div();var e=this;t.config.on("change",function(){e.changed()})},add_label_track:function(t){t.view=this,t.init(),this.label_tracks.push(t)},remove_drawable:function(e,i){if(L.prototype.remove_drawable.call(this,e),i){var n=this;e.container_div.hide(0,function(){t(this).remove(),n.update_intro_div()})}},reset:function(){this.low=this.max_low,this.high=this.max_high,this.viewport_container.find(".yaxislabel").remove()},request_redraw:function(t,e){var i=this,n=e?[e]:i.drawables;c.each(n,function(e){var n=c.find(i.tracks_to_be_redrawn,function(t){return t[0]===e});n?n[1]=t:i.tracks_to_be_redrawn.push([e,t])}),this.requested_redraw||(requestAnimationFrame(function(){i._redraw()}),this.requested_redraw=!0)},_redraw:function(){this.requested_redraw=!1;var t=this.low,e=this.high;t<this.max_low&&(t=this.max_low),e>this.max_high&&(e=this.max_high);var i=this.high-this.low;0!==this.high&&i<this.min_separation&&(e=t+this.min_separation),this.low=Math.floor(t),this.high=Math.ceil(e),this.update_location(this.low,this.high),this.resolution_px_b=this.viewport_container.width()/(this.high-this.low);var n=this.low/(this.max_high-this.max_low)*this.overview_viewport.width()||0,r=(this.high-this.low)/(this.max_high-this.max_low)*this.overview_viewport.width()||0;this.overview_box.css({left:n,width:Math.max(13,r)}).show(),r<13&&this.overview_box.css("left",n-(13-r)/2),this.overview_highlight&&this.overview_highlight.css({left:n,width:r}),c.each(this.tracks_to_be_redrawn,function(t){var e=t[0],i=t[1];e&&e._draw(i)}),this.tracks_to_be_redrawn=[],c.each(this.label_tracks,function(t){t._draw()})},zoom_in:function(t,e){if(!(0===this.max_high||this.high-this.low<=this.min_separation)){var i=this.high-this.low,n=i/2+this.low,r=i/this.zoom_factor/2;t&&(n=t/this.viewport_container.width()*(this.high-this.low)+this.low),this.low=Math.round(n-r),this.high=Math.round(n+r),this.changed(),this.request_redraw()}},zoom_out:function(){if(0!==this.max_high){var t=this.high-this.low,e=t/2+this.low,i=t*this.zoom_factor/2;this.low=Math.round(e-i),this.high=Math.round(e+i),this.changed(),this.request_redraw()}},resize_viewport:function(){this.viewport_container.height(this.container.height()-this.top_container.height()-this.bottom_container.height())},resize_window:function(){this.resize_viewport(),this.request_redraw()},set_overview:function(t){if(this.overview_drawable){if(this.overview_drawable.dataset.id===t.dataset.id)return;this.overview_viewport.find(".track").remove()}var e=t.copy({content_div:this.overview_viewport}),i=this;e.header_div.hide(),e.is_overview=!0,i.overview_drawable=e,this.overview_drawable.postdraw_actions=function(){i.overview_highlight.show().height(i.overview_drawable.content_div.height()),i.overview_viewport.height(i.overview_drawable.content_div.height()+i.overview_box.outerHeight()),i.overview_close.show(),i.resize_window()},i.overview_drawable.request_draw(),this.changed()},reset_overview:function(){t(".tooltip").remove(),this.overview_viewport.find(".track-tile").remove(),this.overview_viewport.height(this.default_overview_height),this.overview_box.height(this.default_overview_height),this.overview_close.hide(),this.overview_highlight.hide(),view.resize_window(),view.overview_drawable=null}});var q=T.default.Tool.extend({defaults:{track:null},initialize:function(t){T.default.Tool.prototype.initialize.call(this,t);var e=!0;void 0!==t.tool_state&&void 0!==t.tool_state.hidden&&(e=t.tool_state.hidden),this.set("hidden",e),this.remove_inputs(["data","hidden_data","conditional"])},state_dict:function(t){return c.extend(this.get_inputs_dict(),{hidden:!this.is_visible()})}}),F=n.View.extend({events:{"change :input":"update_value"},render:function(){var e=this.$el.addClass("param-row"),i=this.model;t("<div>").addClass("param-label").text(i.get("label")).appendTo(e);t("<div/>").addClass("param-input").html(i.get("html")).appendTo(e).find(":input").val(i.get("value")),t("<div style='clear: both;'/>").appendTo(e)},update_value:function(e){this.model.set_value(t(e.target).val())}}),B=n.View.extend({initialize:function(t){this.model.on("change:hidden",this.set_visible,this)},render:function(){var e=this,i=this.model,n=this.$el.addClass("dynamic-tool").hide();n.bind("drag",function(t){t.stopPropagation()}).click(function(t){t.stopPropagation()}).bind("dblclick",function(t){t.stopPropagation()}).keydown(function(t){t.stopPropagation()});t("<div class='tool-name'>").appendTo(n).text(i.get("name"));i.get("inputs").each(function(t){var e=new F({model:t});e.render(),n.append(e.$el)}),n.find("input").click(function(){t(this).select()});var r=t("<div>").addClass("param-row").appendTo(n),a=t("<input type='submit'>").attr("value","Run on complete dataset").appendTo(r);t("<input type='submit'>").attr("value","Run on visible region").appendTo(r).click(function(){e.run_on_region()}),a.click(function(){e.run_on_dataset()}),i.is_visible()&&this.$el.show()},set_visible:function(){this.$el.toggle(this.model.is_visible())},update_params:function(){for(var t=0;t<this.params.length;t++)this.params[t].update_value()},run_on_dataset:function(){var t=this.model;this.run({target_dataset_id:this.model.get("track").dataset.id,action:"rerun",tool_id:t.id},null,function(e){Galaxy.modal.show({title:t.get("name")+" is Running",body:t.get("name")+" is running on the complete dataset. Tool outputs are in dataset's history.",buttons:{Close:function(){Galaxy.modal.hide()}}})})},run_on_region:function(){var t,e=this.model.get("track"),i=this.model,n=new d.default.GenomeRegion({chrom:e.view.chrom,start:e.view.low,end:e.view.high}),r={target_dataset_id:e.dataset.id,action:"rerun",tool_id:i.id,regions:[n.toJSON()]},a=e,o=i.get("name")+a.tool_region_and_parameters_str(n);if(a.container===view){var s=new z(view,view,{name:e.config.get_value("name")}),l=a.container.replace_drawable(a,s,!1);s.container_div.insertBefore(a.view.content_div.children()[l]),s.add_drawable(a),a.container_div.appendTo(s.content_div),t=s}else t=a.container;var u=new a.constructor(view,t,{name:o,hda_ldda:"hda"});u.init_for_tool_data(),u.change_mode(a.mode),u.set_filters_manager(a.filters_manager.copy(u)),u.update_icons(),t.add_drawable(u),u.tiles_div.text("Starting job."),this.run(r,u,function(t){u.set_dataset(new k.default.Dataset(t)),u.tiles_div.text("Running job."),u.init()})},run:function(e,i,n){e.inputs=this.model.get_inputs_dict();var r=new m.default.ServerStateDeferred({ajax_settings:{url:Galaxy.root+"api/tools",data:JSON.stringify(e),dataType:"json",contentType:"application/json",type:"POST"},interval:2e3,success_fn:function(t){return"pending"!==t}});t.when(r.go()).then(function(t){"no converter"===t?(i.container_div.addClass("error"),i.content_div.text(R)):t.error?(i.container_div.addClass("error"),i.content_div.text("Tool cannot be rerun: "+t.message)):n(t)})}}),V=function(t,e){b.default.Scaler.call(this,e),this.filter=t};V.prototype.gen_val=function(t){return this.filter.high===Number.MAX_VALUE||this.filter.low===-Number.MAX_VALUE||this.filter.low===this.filter.high?this.default_val:(parseFloat(t[this.filter.index])-this.filter.low)/(this.filter.high-this.filter.low)};var U=function(e,i,n,r,a){this.track=e,this.region=i,this.low=i.get("start"),this.high=i.get("end"),this.w_scale=n,this.canvas=r,this.html_elt=t("<div class='track-tile'/>").append(r),this.data=a,this.stale=!1};U.prototype.predisplay_actions=function(){};var W=function(t,e,i,n,r){U.call(this,t,e,i,n,r)};W.prototype.predisplay_actions=function(){};var G=function(t,e,i,n,r,a,o,s,l,u,c){U.call(this,t,e,i,n,r),this.mode=a,this.all_slotted=s,this.feature_mapper=l,this.has_icons=!1,this.incomplete_features=u,this.other_tiles_features_drawn={},this.seq_data=c};$(G.prototype,U.prototype),G.prototype.predisplay_actions=function(){};var X=function(e,i,r){$(r,{drag_handle_class:"draghandle"}),N.call(this,e,i,r),this.dataset=null,r.dataset&&(this.dataset=r.dataset instanceof n.Model?r.dataset:new k.default.Dataset(r.dataset)),this.dataset_check_type="converted_datasets_state",this.data_url_extra_params={},this.data_query_wait="data_query_wait"in r?r.data_query_wait:5e3,this.data_manager="data_manager"in r?r.data_manager:new d.default.GenomeDataManager({dataset:this.dataset,genome:new d.default.Genome({key:e.dbkey,chroms_info:{chrom_info:e.chrom_data}}),data_mode_compatible:this.data_and_mode_compatible,can_subset:this.can_subset}),this.min_height_px=16,this.max_height_px=800,this.visible_height_px=this.config.get_value("height"),this.content_div=t("<div class='track-content'>").appendTo(this.container_div),this.container&&(this.container.content_div.append(this.container_div),"resize"in r&&!r.resize||this.add_resize_handle())};$(X.prototype,N.prototype,{action_icons_def:[{name:"mode_icon",title:(0,l.default)("Set display mode"),css_class:"chevron-expand",on_click_fn:function(){}},N.prototype.action_icons_def[0],{name:"overview_icon",title:(0,l.default)("Set as overview"),css_class:"application-dock-270",on_click_fn:function(t){t.view.set_overview(t)}},N.prototype.action_icons_def[1],{name:"filters_icon",title:(0,l.default)("Filters"),css_class:"ui-slider-050",on_click_fn:function(t){t.filters_manager.visible()?t.filters_manager.clear_filters():t.filters_manager.init_filters(),t.filters_manager.toggle()}},{name:"tools_icon",title:(0,l.default)("Tool"),css_class:"hammer",on_click_fn:function(e){e.tool.toggle(),e.tool.is_visible()?e.set_name(e.config.get_value("name")+e.tool_region_and_parameters_str()):e.revert_name(),t(".tooltip").remove()}},{name:"param_space_viz_icon",title:(0,l.default)("Tool parameter space visualization"),css_class:"arrow-split",on_click_fn:function(e){var i="<strong>Tool</strong>:"+e.tool.get("name")+"<br/><strong>Dataset</strong>:"+e.config.get_value("name")+'<br/><strong>Region(s)</strong>: <select name="regions"><option value="cur">current viewing area</option><option value="bookmarks">bookmarks</option><option value="both">current viewing area and bookmarks</option></select>',r=function(){Galaxy.modal.hide(),t(window).unbind("keypress.check_enter_esc")},a=function(){var i,r=t('select[name="regions"] option:selected').val(),a=new d.default.GenomeRegion({chrom:view.chrom,start:view.low,end:view.high}),o=c.map(t(".bookmark"),function(e){return new d.default.GenomeRegion({from_str:t(e).children(".position").text()})});i="cur"===r?[a]:"bookmarks"===r?o:[a].concat(o),Galaxy.modal.hide(),window.location.href=Galaxy.root+"visualization/sweepster?"+t.param({dataset_id:e.dataset.id,hda_ldda:e.dataset.get("hda_ldda"),regions:JSON.stringify(new n.Collection(i).toJSON())})};Galaxy.modal.show({title:"Visualize tool parameter space and output from different parameter settings?",body:i,buttons:{No:r,Yes:a}})}},N.prototype.action_icons_def[2]],can_draw:function(){return this.dataset&&N.prototype.can_draw.call(this)},build_container_div:function(){return t("<div/>").addClass("track").attr("id","track_"+this.id)},set_dataset:function(t){this.dataset=t,this.data_manager.set("dataset",t)},on_resize:function(){this.request_draw({clear_tile_cache:!0})},add_resize_handle:function(){var e=this,i=!1,n=!1,r=t("<div class='track-resize'>");t(e.container_div).hover(function(){e.config.get_value("content_visible")&&(i=!0,r.show())},function(){i=!1,n||r.hide()}),r.hide().bind("dragstart",function(i,r){n=!0,r.original_height=t(e.content_div).height()}).bind("drag",function(i,n){var r=Math.min(Math.max(n.original_height+n.deltaY,e.min_height_px),e.max_height_px);t(e.tiles_div).css("height",r),e.visible_height_px=e.max_height_px===r?0:r,e.on_resize()}).bind("dragend",function(t,a){e.tile_cache.clear(),n=!1,i||r.hide(),e.config.set_value("height",e.visible_height_px),e.changed()}).appendTo(e.container_div)},hide_contents:function(){this.tiles_div.hide(),this.container_div.find(".yaxislabel, .track-resize").hide()},show_contents:function(){this.tiles_div.show(),this.container_div.find(".yaxislabel, .track-resize").show(),this.request_draw()},get_type:function(){return this instanceof J?"LabelTrack":this instanceof Q?"ReferenceTrack":this instanceof Z?"LineTrack":this instanceof nt?"ReadTrack":this instanceof it?"VariantTrack":this instanceof K?"CompositeTrack":this instanceof et?"FeatureTrack":""},show_message:function(e){return this.tiles_div.remove(),t("<span/>").addClass("message").html(e).appendTo(this.content_div)},init:function(e){var i=this;if(i.enabled=!1,i.tile_cache.clear(),i.data_manager.clear(),i.content_div.children().remove(),i.container_div.removeClass("nodata error pending"),i.tiles_div=t("<div/>").addClass("tiles").appendTo(i.content_div),i.dataset.id){var n=t.Deferred(),r={hda_ldda:i.dataset.get("hda_ldda"),data_type:this.dataset_check_type,chrom:i.view.chrom,retry:e};return t.getJSON(this.dataset.url(),r,function(e){if(e&&"error"!==e&&"error"!==e.kind)"no converter"===e?(i.container_div.addClass("error"),i.show_message(R)):"no data"===e||void 0!==e.data&&(null===e.data||0===e.data.length)?(i.container_div.addClass("nodata"),i.show_message("No data for this chrom/contig.")):"pending"===e?(i.container_div.addClass("pending"),i.show_message("Preparing data. This can take a while for a large dataset. If the visualization is saved and closed, preparation will continue in the background."),setTimeout(function(){i.init()},i.data_query_wait)):"data"!==e&&"data"!==e.status||(e.valid_chroms&&(i.valid_chroms=e.valid_chroms,i.update_icons()),i.tiles_div.text("Ready for display"),i.view.chrom?(i.tiles_div.text(""),i.tiles_div.css("height",i.visible_height_px+"px"),i.enabled=!0,t.when.apply(t,i.predraw_init()).done(function(){n.resolve(),i.container_div.removeClass("nodata error pending"),i.request_draw()})):n.resolve());else{i.container_div.addClass("error");var r=i.show_message("Cannot display dataset due to an error. ");e.message&&(r.append(t("<a href='javascript:void(0);'></a>").text("View error").click(function(){Galaxy.modal.show({title:(0,l.default)("Trackster Error"),body:"<pre>"+e.message+"</pre>",buttons:{Close:function(){Galaxy.modal.hide()}}})})),r.append(t("<span/>").text(" ")),r.append(t("<a href='javascript:void(0);'></a>").text("Try again").click(function(){i.init(!0)})))}}),this.update_icons(),n}},predraw_init:function(){var e=this;return t.getJSON(e.dataset.url(),{data_type:"data",stats:!0,chrom:e.view.chrom,low:0,high:e.view.max_high,hda_ldda:e.dataset.get("hda_ldda")},function(t){var i=t.data;if(i&&void 0!==i.min&&void 0!==i.max){var n=i.min,r=i.max;n=Math.floor(Math.min(0,Math.max(n,i.mean-2*i.sd))),r=Math.ceil(Math.max(0,Math.min(r,i.mean+2*i.sd))),e.config.set_default_value("min_value",n),e.config.set_default_value("max_value",r),e.config.set_value("min_value",n),e.config.set_value("max_value",r)}})},get_drawables:function(){return this}});var Y=function(e,i,n){X.call(this,e,i,n);var r=this;if(P(r.container_div,r.drag_handle_class,".group",r),this.filters_manager=new x.default.FiltersManager(this,"filters"in n?n.filters:null),this.data_manager.set("filters_manager",this.filters_manager),this.filters_available=!1,this.tool=n.tool?new q(c.extend(n.tool,{track:this,tool_state:n.tool_state})):null,this.tile_cache=new d.default.Cache(10),this.left_offset=0,this.header_div&&(this.set_filters_manager(this.filters_manager),this.tool)){var a=new B({model:this.tool});a.render(),this.dynamic_tool_div=a.$el,this.header_div.after(this.dynamic_tool_div)}this.tiles_div=t("<div/>").addClass("tiles").appendTo(this.content_div),this.config.get_value("content_visible")||this.tiles_div.hide(),this.overlay_div=t("<div/>").addClass("overlay").appendTo(this.content_div),n.mode&&this.change_mode(n.mode)};$(Y.prototype,N.prototype,X.prototype,{action_icons_def:X.prototype.action_icons_def.concat([{name:"show_more_rows_icon",title:"To minimize track height, not all feature rows are displayed. Click to display more rows.",css_class:"exclamation",on_click_fn:function(e){t(".tooltip").remove(),e.slotters[e.view.resolution_px_b].max_rows*=2,e.request_draw({clear_tile_cache:!0})},hide:!0}]),copy:function(t){var e=this.to_dict();$(e,{data_manager:this.data_manager});var i=new this.constructor(this.view,t,e);return i.change_mode(this.mode),i.enabled=this.enabled,i},set_filters_manager:function(t){this.filters_manager=t,this.header_div.after(this.filters_manager.parent_div)},to_dict:function(){return{track_type:this.get_type(),dataset:{id:this.dataset.id,hda_ldda:this.dataset.get("hda_ldda")},prefs:this.config.to_key_value_dict(),mode:this.mode,filters:this.filters_manager.to_dict(),tool_state:this.tool?this.tool.state_dict():{}}},set_min_max:function(){var e=this;return t.getJSON(e.dataset.url(),{data_type:"data",stats:!0,chrom:e.view.chrom,low:0,high:e.view.max_high,hda_ldda:e.dataset.get("hda_ldda")},function(t){var i=t.data;if(isNaN(parseFloat(e.config.get_value("min_value")))||isNaN(parseFloat(e.config.get_value("max_value")))){var n=i.min,r=i.max;n=Math.floor(Math.min(0,Math.max(n,i.mean-2*i.sd))),r=Math.ceil(Math.max(0,Math.min(r,i.mean+2*i.sd))),e.config.set_value("min_value",n),e.config.set_value("max_value",r)}})},change_mode:function(t){var e=this;return e.mode=t,e.config.set_value("mode",t),"Auto"===t&&this.data_manager.clear(),e.request_draw({clear_tile_cache:!0}),this.action_icons.mode_icon.attr("title","Set display mode (now: "+e.mode+")"),e},update_icons:function(){var t=this;t.action_icons.filters_icon.toggle(t.filters_available),t.action_icons.tools_icon.toggle(null!==t.tool),t.action_icons.param_space_viz_icon.toggle(null!==t.tool)},_gen_tile_cache_key:function(t,e){return t+"_"+e},request_draw:function(t){t&&t.clear_tile_cache&&this.tile_cache.clear(),this.view.request_redraw(t,this)},before_draw:function(){this.max_height_px=0},_draw:function(e){if(this.can_draw()){var i=e&&e.clear_after,n=this.view.low,r=this.view.high,a=this.view.container.width(),o=this.view.resolution_px_b,s=1/o;this.is_overview&&(n=this.view.max_low,r=this.view.max_high,o=a/(view.max_high-view.max_low),s=1/o),this.before_draw(),this.tiles_div.children().addClass("remove");for(var l,u,h=Math.floor(400*s),f=Math.floor(n/h),p=[],g=[];f*h<r;)l=new d.default.GenomeRegion({chrom:this.view.chrom,start:f*h,end:Math.min((f+1)*h,this.view.max_high)}),u=this.draw_helper(l,o,e),p.push(u),t.when(u).then(function(t){g.push(t)}),f+=1;i||this.tiles_div.children(".remove").removeClass("remove").remove();var m=this;t.when.apply(t,p).then(function(){m.tiles_div.children(".remove").remove(),g=c.filter(g,function(t){return null!==t}),0!==g.length&&m.postdraw_actions(g,a,o,i)})}},_add_yaxis_label:function(e,i){var n=this,r="max"===e?"top":"bottom",o="max"===e?"max":"min",s="max"===e?"max_value":"min_value",l=this.container_div.find(".yaxislabel."+r),u=a(n.config.get_value(s),1);i=i||function(){n.request_draw({clear_tile_cache:!0})},0!==l.length?l.text(u):(l=t("<div/>").text(u).make_text_editable({num_cols:12,on_finish:function(e){t(".tooltip").remove(),n.config.set_value(s,a(e,1)),i()},help_text:"Set "+o+" value"}).addClass("yaxislabel "+r).css("color",this.config.get_value("label_color")),this.container_div.prepend(l))},postdraw_actions:function(t,e,i,n){if(c.filter(t,function(t){return t instanceof W}).length>0){this.max_height_px=0;var r=this;c.each(t,function(t){t instanceof W||(t.html_elt.remove(),r.draw_helper(t.region,i,{force:!0,mode:"Coverage"}))}),r._add_yaxis_label("max")}else this.container_div.find(".yaxislabel").remove(),c.find(t,function(t){return t.has_icons})&&c.each(t,function(t){t.has_icons||t.html_elt.css("padding-top",20)})},get_mode:function(t){return this.mode},update_auto_mode:function(t){},_get_drawables:function(){return[this]},draw_helper:function(e,i,n){n||(n={});var r=n.force,a=n.mode||this.mode,o=1/i,s=this,l=this._get_drawables(),u=this._gen_tile_cache_key(i,e),h=r?void 0:s.tile_cache.get_elt(u);if(h)return function(t){return t&&"track"in t}(h)&&s.show_tile(h,i),h;if(!1===n.data_fetch)return null;var d=function(){var t=c.find(I,function(t){return t===a})?"Coverage":a,i=c.map(l,function(i){return i.data_manager.get_data(e,t,o,s.data_url_extra_params)});return view.reference_track&&i.push(view.reference_track.data_manager.get_data(e,a,o,view.reference_track.data_url_extra_params)),i},f=t.Deferred();return s.tile_cache.set_elt(u,f),t.when.apply(t,d()).then(function(){var r,a=d(),o=a;if(c.find(a,function(t){return m.default.is_deferred(t)}))return s.tile_cache.set_elt(u,void 0),void t.when(s.draw_helper(e,i,n)).then(function(t){f.resolve(t)});view.reference_track&&(r=view.reference_track.data_manager.subset_entry(a.pop(),e));var h=[],p=[];c.each(l,function(t,e){var n=t.mode,r=o[e];"Auto"===n&&(n=t.get_mode(r),t.update_auto_mode(n)),h.push(n),p.push(t.get_canvas_height(r,n,i,b))});var g,v=s.view.canvas_manager.new_canvas(),_=e.get("start"),y=e.get("end"),b=Math.ceil((y-_)*i)+s.left_offset,w=c.max(p);v.width=b,v.height=n.height||w;var x=v.getContext("2d");x.translate(s.left_offset,0),l.length>1&&(x.globalAlpha=.5,x.globalCompositeOperation="source-over"),c.each(l,function(t,n){g=t.draw_tile(o[n],x,h[n],e,i,r)}),void 0!==g&&(s.tile_cache.set_elt(u,g),s.show_tile(g,i)),f.resolve(g)}),f},get_canvas_height:function(t,e,i,n){return this.visible_height_px},_draw_line_track_tile:function(t,e,i,n,r){-1!==[void 0,null].indexOf(this.config.get_value("min_value"))&&this.config.set_value("min_value",0),-1!==[void 0,null,0].indexOf(this.config.get_value("max_value"))&&this.config.set_value("max_value",c.max(c.map(t.data,function(t){return t[1]}))||0);var a=e.canvas;return new b.default.LinePainter(t.data,n.get("start"),n.get("end"),this.config.to_key_value_dict(),i).draw(e,a.width,a.height,r),new W(this,n,r,a,t.data)},draw_tile:function(t,e,i,n,r,a){},show_tile:function(t,e){var i=t.html_elt;t.predisplay_actions();var n=Math.round((t.low-(this.is_overview?this.view.max_low:this.view.low))*e);this.left_offset&&(n-=this.left_offset),i.css("left",n),i.hasClass("remove")?i.removeClass("remove"):this.tiles_div.append(i),i.css("height","auto"),this.max_height_px=Math.max(this.max_height_px,i.height()-2),i.parent().children().css("height",this.max_height_px+"px");var r=this.max_height_px;0!==this.visible_height_px&&(r=Math.min(this.max_height_px,this.visible_height_px)),this.tiles_div.css("height",r+"px")},tool_region_and_parameters_str:function(t){var e=this;return" - region=["+(void 0!==t?t.toString():"all")+"], parameters=["+c.values(e.tool.get_inputs_dict()).join(", ")+"]"},data_and_mode_compatible:function(t,e){return"Auto"===e||("Coverage"===e?"bigwig"===t.dataset_type:"bigwig"!==t.dataset_type&&"no_detail"!==t.extra_info)},can_subset:function(t){return!t.message&&"no_detail"!==t.extra_info&&("bigwig"!==t.dataset_type||t.data[1][0]-t.data[0][0]==1)},init_for_tool_data:function(){this.data_manager.set("data_type","raw_data"),this.data_query_wait=1e3,this.dataset_check_type="state"}});var J=function(t,e){X.call(this,t,e,{resize:!1,header:!1}),this.container_div.addClass("label-track")};$(J.prototype,X.prototype,{init:function(){this.enabled=!0},predraw_init:function(){},_draw:function(e){for(var i=this.view,n=i.high-i.low,r=Math.floor(Math.pow(10,Math.floor(Math.log(n)/Math.log(10)))),a=Math.floor(i.low/r)*r,o=this.view.container.width(),s=t("<div/>").addClass("label-container");a<i.high;){var l=Math.floor((a-i.low)/n*o);s.append(t("<div/>").addClass("pos-label").text(m.default.commatize(a)).css({left:l})),a+=r}this.content_div.children(":first").remove(),this.content_div.append(s)}});var K=function(t,e,i){if(Y.call(this,t,e,i),this.drawables=[],"drawables"in i){for(var n,r=0;r<i.drawables.length;r++)n=i.drawables[r],this.drawables[r]=at(n,t,null),n.left_offset>this.left_offset&&(this.left_offset=n.left_offset);this.enabled=!0}c.each(this.drawables,function(t){(t instanceof et||t instanceof nt)&&t.change_mode("Coverage")}),this.update_icons(),this.obj_type="CompositeTrack"};$(K.prototype,Y.prototype,{display_modes:I,build_config_params:function(){return c.union(N.prototype.config_params,[{key:"min_value",label:"Min Value",type:"float",default_value:void 0},{key:"max_value",label:"Max Value",type:"float",default_value:void 0},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"height",type:"int",default_value:30,hidden:!0}])},action_icons_def:[{name:"composite_icon",title:(0,l.default)("Show individual tracks"),css_class:"layers-stack",on_click_fn:function(e){t(".tooltip").remove(),e.show_group()}}].concat(Y.prototype.action_icons_def),to_dict:L.prototype.to_dict,add_drawable:L.prototype.add_drawable,unpack_drawables:L.prototype.unpack_drawables,config_onchange:function(){this.set_name(this.config.get_value("name")),this.request_draw({clear_tile_cache:!0})},on_resize:function(){var t=this.visible_height_px;c.each(this.drawables,function(e){e.visible_height_px=t}),X.prototype.on_resize.call(this)},change_mode:function(t){Y.prototype.change_mode.call(this,t);for(var e=0;e<this.drawables.length;e++)this.drawables[e].change_mode(t)},init:function(){for(var e=[],i=0;i<this.drawables.length;i++)e.push(this.drawables[i].init());var n=this;t.when.apply(t,e).then(function(){n.enabled=!0,n.request_draw()})},update_icons:function(){this.action_icons.filters_icon.hide(),this.action_icons.tools_icon.hide(),this.action_icons.param_space_viz_icon.hide()},can_draw:N.prototype.can_draw,_get_drawables:function(){return this.drawables},show_group:function(){for(var t,e=new z(this.view,this.container,{name:this.config.get_value("name")}),i=0;i<this.drawables.length;i++)t=this.drawables[i],t.update_icons(),e.add_drawable(t),t.container=e,e.content_div.append(t.container_div);this.container.replace_drawable(this,e,!0);e.request_draw({clear_tile_cache:!0})},before_draw:function(){var t=c.min(c.map(this.drawables,function(t){return t.config.get_value("min_value")})),e=c.max(c.map(this.drawables,function(t){return t.config.get_value("max_value")}));this.config.set_value("min_value",t),this.config.set_value("max_value",e),c.each(this.drawables,function(i){i.config.set_value("min_value",t),i.config.set_value("max_value",e)})},update_all_min_max:function(){var t=this.config.get_value("min_value"),e=this.config.get_value("max_value");c.each(this.drawables,function(i){i.config.set_value("min_value",t),i.config.set_value("max_value",e)}),this.request_draw({clear_tile_cache:!0})},postdraw_actions:function(t,e,i,n){var r,a=-1;for(r=0;r<t.length;r++){var o=t[r].html_elt.find("canvas").height();o>a&&(a=o)}for(r=0;r<t.length;r++){var s=t[r];s.html_elt.find("canvas").height()!==a&&(this.draw_helper(s.region,i,{force:!0,height:a}),s.html_elt.remove())}var l=this,u=function(){l.update_all_min_max()};this._add_yaxis_label("min",u),this._add_yaxis_label("max",u)}});var Q=function(t){Y.call(this,t,{content_div:t.top_labeltrack},{resize:!1,header:!1}),this.left_offset=t.canvas_manager.char_width_px,this.container_div.addClass("reference-track"),this.data_url=Galaxy.root+"api/genomes/"+this.view.dbkey,this.data_url_extra_params={reference:!0},this.data_manager=new d.default.GenomeReferenceDataManager({data_url:this.data_url,can_subset:this.can_subset}),this.hide_contents()};$(Q.prototype,N.prototype,Y.prototype,{build_config_params:function(){return c.union(N.prototype.config_params,[{key:"height",type:"int",default_value:13,hidden:!0}])},init:function(){this.data_manager.clear(),this.enabled=!0},predraw_init:function(){},can_draw:N.prototype.can_draw,draw_helper:function(t,e,i){var n,r=this.tiles_div.is(":visible"),a=null;return e>this.view.canvas_manager.char_width_px?(this.tiles_div.show(),n=!0,a=Y.prototype.draw_helper.call(this,t,e,i)):(n=!1,this.tiles_div.hide()),r!==n&&this.view.resize_viewport(),a},can_subset:function(t){return!0},draw_tile:function(t,e,i,n,r){var a=this.data_manager.subset_entry(t,n),o=a.data,s=e.canvas;e.font=e.canvas.manager.default_font,e.textAlign="center";for(var l=0,u=o.length;l<u;l++)e.fillStyle=this.view.get_base_color(o[l]),e.fillText(o[l],Math.floor(l*r),10);return new U(this,n,r,s,a)}});var Z=function(e,i,n){this.mode="Histogram",Y.call(this,e,i,n),this.left_offset=30;var r=this;t.when(o(Galaxy.root+"datasets/"+this.dataset.id+"/display")).then(function(t){t&&(r.data_manager=new O.default.BBIDataManager({dataset:r.dataset}))})};$(Z.prototype,N.prototype,Y.prototype,{display_modes:I,build_config_params:function(){return c.union(N.prototype.config_params,[{key:"color",label:"Color",type:"color"},{key:"min_value",label:"Min Value",type:"float",default_value:void 0},{key:"max_value",label:"Max Value",type:"float",default_value:void 0},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"height",type:"int",default_value:30,hidden:!0}])},config_onchange:function(){this.set_name(this.config.get_value("name")),this.request_draw({clear_tile_cache:!0})},before_draw:function(){},draw_tile:function(t,e,i,n,r){return this._draw_line_track_tile(t,e,i,n,r)},can_subset:function(t){return t.data[1][0]-t.data[0][0]==1},postdraw_actions:function(t,e,i,n){this._add_yaxis_label("max"),this._add_yaxis_label("min")}});var tt=function(t,e,i){this.mode="Heatmap",Y.call(this,t,e,i)};$(tt.prototype,N.prototype,Y.prototype,{display_modes:["Heatmap"],build_config_params:function(){return c.union(N.prototype.config_params,[{key:"pos_color",label:"Positive Color",type:"color",default_value:"#FF8C00"},{key:"neg_color",label:"Negative Color",type:"color",default_value:"#4169E1"},{key:"min_value",label:"Min Value",type:"int",default_value:void 0},{key:"max_value",label:"Max Value",type:"int",default_value:void 0},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"height",type:"int",default_value:500,hidden:!0}])},config_onchange:function(){this.set_name(this.config.get_value("name")),this.request_draw({clear_tile_cache:!0})},predraw_init:function(){var e=this;return t.getJSON(e.dataset.url(),{data_type:"data",stats:!0,chrom:e.view.chrom,low:0,high:e.view.max_high,hda_ldda:e.dataset.get("hda_ldda")},function(t){t.data})},draw_tile:function(t,e,i,n,r){var a=e.canvas;return new b.default.DiagonalHeatmapPainter(t.data,n.get("start"),n.get("end"),this.config.to_key_value_dict(),i).draw(e,a.width,a.height,r),new U(this,n,r,a,t.data)}});var et=function(t,e,i){Y.call(this,t,e,i),this.container_div.addClass("feature-track"),this.summary_draw_height=30,this.slotters={},this.start_end_dct={},this.left_offset=200,this.set_painter_from_config()};$(et.prototype,N.prototype,Y.prototype,{display_modes:["Auto","Coverage","Dense","Squish","Pack"],build_config_params:function(){return c.union(N.prototype.config_params,[{key:"block_color",label:"Block color",type:"color"},{key:"reverse_strand_color",label:"Antisense strand color",type:"color"},{key:"label_color",label:"Label color",type:"color",default_value:"black"},{key:"show_counts",label:"Show summary counts",type:"bool",default_value:!0,help:"Show the number of items in each bin when drawing summary histogram"},{key:"min_value",label:"Histogram minimum",type:"float",default_value:void 0,help:"clear value to set automatically"},{key:"max_value",label:"Histogram maximum",type:"float",default_value:void 0,help:"clear value to set automatically"},{key:"connector_style",label:"Connector style",type:"select",default_value:"fishbones",options:[{label:"Line with arrows",value:"fishbone"},{label:"Arcs",value:"arcs"}]},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"height",type:"int",default_value:0,hidden:!0}])},config_onchange:function(){this.set_name(this.config.get_value("name")),this.set_painter_from_config(),this.request_draw({clear_tile_cache:!0})},set_painter_from_config:function(){"arcs"===this.config.get_value("connector_style")?this.painter=b.default.ArcLinkedFeaturePainter:this.painter=b.default.LinkedFeaturePainter},postdraw_actions:function(e,i,n,r){Y.prototype.postdraw_actions.call(this,e,i,n,r);var a,o=this;if(0===c.filter(e,function(t){return t instanceof W}).length){var s={};c.each(c.pluck(e,"incomplete_features"),function(t){c.each(t,function(t){s[t[0]]=t})});var l=this;c.each(e,function(e){var i=c.omit(s,c.map(e.incomplete_features,function(t){return t[0]}));if(i=c.omit(i,c.keys(e.other_tiles_features_drawn)),0!==c.size(i)){var n={data:c.values(i)},r=l.view.canvas_manager.new_canvas(),a=r.getContext("2d");r.height=Math.max(e.canvas.height,l.get_canvas_height(n,e.mode,e.w_scale,100)),r.width=e.canvas.width,a.drawImage(e.canvas,0,0),a.translate(o.left_offset,0);var u=l.draw_tile(n,a,e.mode,e.region,e.w_scale,e.seq_data);t(e.canvas).replaceWith(t(u.canvas)),e.canvas=r,c.extend(e.other_tiles_features_drawn,s)}})}if(o.filters_manager){var u,h=o.filters_manager.filters;for(u=0;u<h.length;u++)h[u].update_ui_elt();var d,f,p=!1;for(a=0;a<e.length;a++)if(e[a].data.length)for(d=e[a].data[0],u=0;u<h.length;u++)if(f=h[u],f.applies_to(d)&&f.min!==f.max){p=!0;break}o.filters_available!==p&&(o.filters_available=p,o.filters_available||o.filters_manager.hide(),o.update_icons())}if(e[0]instanceof G){var g=!0;for(a=0;a<e.length;a++)if(!e[a].all_slotted){g=!1;break}this.action_icons.show_more_rows_icon.toggle(!g)}else this.action_icons.show_more_rows_icon.hide()},update_auto_mode:function(t){"Auto"===this.mode&&("no_detail"===t&&(t="feature spans"),this.action_icons.mode_icon.attr("title","Set display mode (now: Auto/"+t+")"))},incremental_slots:function(t,e,i){var n=this.view.canvas_manager.dummy_context,r=this.slotters[t];return r&&r.mode===i||(r=new _.default.FeatureSlotter(t,i,100,function(t){return n.measureText(t)}),this.slotters[t]=r),r.slot_features(e)},get_mode:function(t){return"no_detail"===t.extra_info||this.is_overview?"no_detail":this.view.high-this.view.low>12e3?"Squish":"Pack"},get_canvas_height:function(t,e,i,n){if("Coverage"===e||"bigwig"===t.dataset_type)return this.summary_draw_height;var r=this.incremental_slots(i,t.data,e),a=new this.painter(null,null,null,this.config.to_key_value_dict(),e);return Math.max(this.min_height_px,a.get_required_height(r,n))},draw_tile:function(t,e,i,n,r,a,o){var s=this,l=e.canvas,u=n.get("start"),c=n.get("end"),h=this.left_offset;if("bigwig"===t.dataset_type)return this._draw_line_track_tile(t,e,i,n,r);var d=[],f=this.slotters[r].slots,p=!0;if(t.data)for(var g=this.filters_manager.filters,m=0,v=t.data.length;m<v;m++){for(var _,y=t.data[m],b=!1,w=0,x=g.length;w<x;w++)if(_=g[w],_.update_attrs(y),!_.keep(y)){b=!0;break}b||(d.push(y),y[0]in f||(p=!1))}var C=this.filters_manager.alpha_filter?new V(this.filters_manager.alpha_filter):null,k=this.filters_manager.height_filter?new V(this.filters_manager.height_filter):null,S=new this.painter(d,u,c,this.config.to_key_value_dict(),i,C,k,a,function(t){return s.view.get_base_color(t)}),T=null;if(e.fillStyle=this.config.get_value("block_color"),e.font=e.canvas.manager.default_font,e.textAlign="right",t.data){var A=S.draw(e,l.width,l.height,r,f);T=A.feature_mapper,incomplete_features=A.incomplete_features,T.translation=-h}return o?void 0:new G(s,n,r,l,t.data,i,t.message,p,T,incomplete_features,a)}});var it=function(t,e,i){Y.call(this,t,e,i),this.painter=b.default.VariantPainter,this.summary_draw_height=30,this.left_offset=30};$(it.prototype,N.prototype,Y.prototype,{display_modes:["Auto","Coverage","Dense","Squish","Pack"],build_config_params:function(){return c.union(N.prototype.config_params,[{key:"color",label:"Histogram color",type:"color"},{key:"show_sample_data",label:"Show sample data",type:"bool",default_value:!0},{key:"show_labels",label:"Show summary and sample labels",type:"bool",default_value:!0},{key:"summary_height",label:"Locus summary height",type:"float",default_value:20},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"height",type:"int",default_value:0,hidden:!0}])},config_onchange:function(){this.set_name(this.config.get_value("name")),this.request_draw({clear_tile_cache:!0})},draw_tile:function(t,e,i,n,r){if("bigwig"===t.dataset_type)return this._draw_line_track_tile(t,e,"Histogram",n,r);var a=this.view;return new this.painter(t.data,n.get("start"),n.get("end"),this.config.to_key_value_dict(),i,function(t){return a.get_base_color(t)}).draw(e,e.canvas.width,e.canvas.height,r),new U(this,n,r,e.canvas,t.data)},get_canvas_height:function(t,e,i,n){if("bigwig"===t.dataset_type)return this.summary_draw_height;var r=this.dataset.get_metadata("sample_names")?this.dataset.get_metadata("sample_names").length:0;return 0===r&&0!==t.data.length&&(r=t.data[0][7].match(/,/g),r=null===r?1:r.length+1),new this.painter(null,null,null,this.config.to_key_value_dict(),e).get_required_height(r)},predraw_init:function(){var t=[X.prototype.predraw_init.call(this)];return this.dataset.get_metadata("sample_names")||t.push(this.dataset.fetch()),t},postdraw_actions:function(e,i,n,r){Y.prototype.postdraw_actions.call(this,e,i,n,r);var a=c.filter(e,function(t){return t instanceof W}),o=this.dataset.get_metadata("sample_names");if(0===a.length&&this.config.get_value("show_labels")&&o&&o.length>1){var s;if(0===this.container_div.find(".yaxislabel.variant").length&&(s=this.config.get_value("summary_height")/2,this.tiles_div.prepend(t("<div/>").text("Summary").addClass("yaxislabel variant top").css({"font-size":s+"px",top:(this.config.get_value("summary_height")-s)/2+"px"})),this.config.get_value("show_sample_data"))){var l=o.join("<br/>");this.tiles_div.prepend(t("<div/>").html(l).addClass("yaxislabel variant top sample").css({top:this.config.get_value("summary_height")}))}s=("Squish"===this.mode?5:10)+"px",t(this.tiles_div).find(".sample").css({"font-size":s,"line-height":s}),t(this.tiles_div).find(".yaxislabel").css("color",this.config.get_value("label_color"))}else this.container_div.find(".yaxislabel.variant").remove()}});var nt=function(t,e,i){et.call(this,t,e,i),this.painter=b.default.ReadPainter,this.update_icons()};$(nt.prototype,N.prototype,Y.prototype,et.prototype,{build_config_params:function(){return c.union(N.prototype.config_params,[{key:"block_color",label:"Histogram 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sparkline"),t.data(this,"_jqs_errnotify",!0)));c=new(t.fn.sparkline[a.get("type")])(this,i,a,n,r),c.render(),u&&u.registerSparkline(c)},t(this).html()&&!a.get("disableHiddenCheck")&&t(this).is(":hidden")||!t(this).parents("body").length){if(!a.get("composite")&&t.data(this,"_jqs_pending"))for(r=j.length;r;r--)j[r-1][0]==this&&j.splice(r-1,1);j.push([this,n]),t.data(this,"_jqs_pending",!0)}else n.call(this)})},t.fn.sparkline.defaults=e(),t.sparkline_display_visible=function(){var e,i,n,r=[];for(i=0,n=j.length;i<n;i++)e=j[i][0],t(e).is(":visible")&&!t(e).parents().is(":hidden")?(j[i][1].call(e),t.data(j[i][0],"_jqs_pending",!1),r.push(i)):t(e).closest("html").length||t.data(e,"_jqs_pending")||(t.data(j[i][0],"_jqs_pending",!1),r.push(i));for(i=r.length;i;i--)j.splice(r[i-1],1)},t.fn.sparkline.options=i({init:function(e,i){var n,r,a,o;this.userOptions=i=i||{},this.tag=e,this.tagValCache={},r=t.fn.sparkline.defaults,a=r.common,this.tagOptionsPrefix=i.enableTagOptions&&(i.tagOptionsPrefix||a.tagOptionsPrefix),o=this.getTagSetting("type"),n=o===P?r[i.type||a.type]:r[o],this.mergedOptions=t.extend({},a,n,i)},getTagSetting:function(t){var e,i,n,r,a=this.tagOptionsPrefix;if(!1===a||void 0===a)return P;if(this.tagValCache.hasOwnProperty(t))e=this.tagValCache.key;else{if(void 0===(e=this.tag.getAttribute(a+t))||null===e)e=P;else if("["===e.substr(0,1))for(e=e.substr(1,e.length-2).split(","),i=e.length;i--;)e[i]=l(e[i].replace(/(^\s*)|(\s*$)/g,""));else if("{"===e.substr(0,1))for(n=e.substr(1,e.length-2).split(","),e={},i=n.length;i--;)r=n[i].split(":",2),e[r[0].replace(/(^\s*)|(\s*$)/g,"")]=l(r[1].replace(/(^\s*)|(\s*$)/g,""));else e=l(e);this.tagValCache.key=e}return e},get:function(t,e){var i,n=this.getTagSetting(t);return n!==P?n:void 0===(i=this.mergedOptions[t])?e:i}}),t.fn.sparkline._base=i({disabled:!1,init:function(e,i,n,r,a){this.el=e,this.$el=t(e),this.values=i,this.options=n,this.width=r,this.height=a,this.currentRegion=void 0},initTarget:function(){var t=!this.options.get("disableInteraction");(this.target=this.$el.simpledraw(this.width,this.height,this.options.get("composite"),t))?(this.canvasWidth=this.target.pixelWidth,this.canvasHeight=this.target.pixelHeight):this.disabled=!0},render:function(){return!this.disabled||(this.el.innerHTML="",!1)},getRegion:function(t,e){},setRegionHighlight:function(t,e,i){var n,r=this.currentRegion,a=!this.options.get("disableHighlight");return e>this.canvasWidth||i>this.canvasHeight||e<0||i<0?null:(n=this.getRegion(t,e,i),r!==n&&(void 0!==r&&a&&this.removeHighlight(),this.currentRegion=n,void 0!==n&&a&&this.renderHighlight(),!0))},clearRegionHighlight:function(){return void 0!==this.currentRegion&&(this.removeHighlight(),this.currentRegion=void 0,!0)},renderHighlight:function(){this.changeHighlight(!0)},removeHighlight:function(){this.changeHighlight(!1)},changeHighlight:function(t){},getCurrentRegionTooltip:function(){var e,i,r,a,o,s,l,u,c,h,d,f,p,g,m=this.options,v="",_=[];if(void 0===this.currentRegion)return"";if(e=this.getCurrentRegionFields(),d=m.get("tooltipFormatter"))return d(this,m,e);if(m.get("tooltipChartTitle")&&(v+='<div class="jqs jqstitle">'+m.get("tooltipChartTitle")+"</div>\n"),!(i=this.options.get("tooltipFormat")))return"";if(t.isArray(i)||(i=[i]),t.isArray(e)||(e=[e]),l=this.options.get("tooltipFormatFieldlist"),u=this.options.get("tooltipFormatFieldlistKey"),l&&u){for(c=[],s=e.length;s--;)h=e[s][u],-1!=(g=t.inArray(h,l))&&(c[g]=e[s]);e=c}for(r=i.length,p=e.length,s=0;s<r;s++)for(f=i[s],"string"==typeof f&&(f=new n(f)),a=f.fclass||"jqsfield",g=0;g<p;g++)e[g].isNull&&m.get("tooltipSkipNull")||(t.extend(e[g],{prefix:m.get("tooltipPrefix"),suffix:m.get("tooltipSuffix")}),o=f.render(e[g],m.get("tooltipValueLookups"),m),_.push('<div class="'+a+'">'+o+"</div>"));return _.length?v+_.join("\n"):""},getCurrentRegionFields:function(){},calcHighlightColor:function(t,e){var i,n,a,o,l=e.get("highlightColor"),u=e.get("highlightLighten");if(l)return l;if(u&&(i=/^#([0-9a-f])([0-9a-f])([0-9a-f])$/i.exec(t)||/^#([0-9a-f]{2})([0-9a-f]{2})([0-9a-f]{2})$/i.exec(t))){for(a=[],n=4===t.length?16:1,o=0;o<3;o++)a[o]=r(s.round(parseInt(i[o+1],16)*n*u),0,255);return"rgb("+a.join(",")+")"}return t}}),y={changeHighlight:function(e){var i,n=this.currentRegion,r=this.target,a=this.regionShapes[n];a&&(i=this.renderRegion(n,e),t.isArray(i)||t.isArray(a)?(r.replaceWithShapes(a,i),this.regionShapes[n]=t.map(i,function(t){return t.id})):(r.replaceWithShape(a,i),this.regionShapes[n]=i.id))},render:function(){var e,i,n,r,a=this.values,o=this.target,s=this.regionShapes;if(this.cls._super.render.call(this)){for(n=a.length;n--;)if(e=this.renderRegion(n))if(t.isArray(e)){for(i=[],r=e.length;r--;)e[r].append(),i.push(e[r].id);s[n]=i}else e.append(),s[n]=e.id;else s[n]=null;o.render()}}},t.fn.sparkline.line=b=i(t.fn.sparkline._base,{type:"line",init:function(t,e,i,n,r){b._super.init.call(this,t,e,i,n,r),this.vertices=[],this.regionMap=[],this.xvalues=[],this.yvalues=[],this.yminmax=[],this.hightlightSpotId=null,this.lastShapeId=null,this.initTarget()},getRegion:function(t,e,i){var n,r=this.regionMap;for(n=r.length;n--;)if(null!==r[n]&&e>=r[n][0]&&e<=r[n][1])return r[n][2]},getCurrentRegionFields:function(){var t=this.currentRegion;return{isNull:null===this.yvalues[t],x:this.xvalues[t],y:this.yvalues[t],color:this.options.get("lineColor"),fillColor:this.options.get("fillColor"),offset:t}},renderHighlight:function(){var t,e,i=this.currentRegion,n=this.target,r=this.vertices[i],a=this.options,o=a.get("spotRadius"),s=a.get("highlightSpotColor"),l=a.get("highlightLineColor");r&&(o&&s&&(t=n.drawCircle(r[0],r[1],o,void 0,s),this.highlightSpotId=t.id,n.insertAfterShape(this.lastShapeId,t)),l&&(e=n.drawLine(r[0],this.canvasTop,r[0],this.canvasTop+this.canvasHeight,l),this.highlightLineId=e.id,n.insertAfterShape(this.lastShapeId,e)))},removeHighlight:function(){var t=this.target;this.highlightSpotId&&(t.removeShapeId(this.highlightSpotId),this.highlightSpotId=null),this.highlightLineId&&(t.removeShapeId(this.highlightLineId),this.highlightLineId=null)},scanValues:function(){var t,e,i,n,r,a=this.values,o=a.length,l=this.xvalues,u=this.yvalues,c=this.yminmax;for(t=0;t<o;t++)e=a[t],i="string"==typeof a[t],n="object"==typeof a[t]&&a[t]instanceof Array,r=i&&a[t].split(":"),i&&2===r.length?(l.push(Number(r[0])),u.push(Number(r[1])),c.push(Number(r[1]))):n?(l.push(e[0]),u.push(e[1]),c.push(e[1])):(l.push(t),null===a[t]||"null"===a[t]?u.push(null):(u.push(Number(e)),c.push(Number(e))));this.options.get("xvalues")&&(l=this.options.get("xvalues")),this.maxy=this.maxyorg=s.max.apply(s,c),this.miny=this.minyorg=s.min.apply(s,c),this.maxx=s.max.apply(s,l),this.minx=s.min.apply(s,l),this.xvalues=l,this.yvalues=u,this.yminmax=c},processRangeOptions:function(){var t=this.options,e=t.get("normalRangeMin"),i=t.get("normalRangeMax");void 0!==e&&(e<this.miny&&(this.miny=e),i>this.maxy&&(this.maxy=i)),void 0!==t.get("chartRangeMin")&&(t.get("chartRangeClip")||t.get("chartRangeMin")<this.miny)&&(this.miny=t.get("chartRangeMin")),void 0!==t.get("chartRangeMax")&&(t.get("chartRangeClip")||t.get("chartRangeMax")>this.maxy)&&(this.maxy=t.get("chartRangeMax")),void 0!==t.get("chartRangeMinX")&&(t.get("chartRangeClipX")||t.get("chartRangeMinX")<this.minx)&&(this.minx=t.get("chartRangeMinX")),void 0!==t.get("chartRangeMaxX")&&(t.get("chartRangeClipX")||t.get("chartRangeMaxX")>this.maxx)&&(this.maxx=t.get("chartRangeMaxX"))},drawNormalRange:function(t,e,i,n,r){var a=this.options.get("normalRangeMin"),o=this.options.get("normalRangeMax"),l=e+s.round(i-i*((o-this.miny)/r)),u=s.round(i*(o-a)/r);this.target.drawRect(t,l,n,u,void 0,this.options.get("normalRangeColor")).append()},render:function(){var e,i,n,r,a,o,l,u,c,h,d,f,p,g,v,_,y,w,x,C,k,S,T,A,M,E=this.options,O=this.target,$=this.canvasWidth,D=this.canvasHeight,j=this.vertices,P=E.get("spotRadius"),R=this.regionMap;if(b._super.render.call(this)&&(this.scanValues(),this.processRangeOptions(),T=this.xvalues,A=this.yvalues,this.yminmax.length&&!(this.yvalues.length<2))){for(r=a=0,e=this.maxx-this.minx==0?1:this.maxx-this.minx,i=this.maxy-this.miny==0?1:this.maxy-this.miny,n=this.yvalues.length-1,P&&($<4*P||D<4*P)&&(P=0),P&&(k=E.get("highlightSpotColor")&&!E.get("disableInteraction"),(k||E.get("minSpotColor")||E.get("spotColor")&&A[n]===this.miny)&&(D-=s.ceil(P)),(k||E.get("maxSpotColor")||E.get("spotColor")&&A[n]===this.maxy)&&(D-=s.ceil(P),r+=s.ceil(P)),(k||(E.get("minSpotColor")||E.get("maxSpotColor"))&&(A[0]===this.miny||A[0]===this.maxy))&&(a+=s.ceil(P),$-=s.ceil(P)),(k||E.get("spotColor")||E.get("minSpotColor")||E.get("maxSpotColor")&&(A[n]===this.miny||A[n]===this.maxy))&&($-=s.ceil(P))),D--,void 0===E.get("normalRangeMin")||E.get("drawNormalOnTop")||this.drawNormalRange(a,r,D,$,i),l=[],u=[l],g=v=null,_=A.length,M=0;M<_;M++)c=T[M],d=T[M+1],h=A[M],f=a+s.round((c-this.minx)*($/e)),p=M<_-1?a+s.round((d-this.minx)*($/e)):$,v=f+(p-f)/2,R[M]=[g||0,v,M],g=v,null===h?M&&(null!==A[M-1]&&(l=[],u.push(l)),j.push(null)):(h<this.miny&&(h=this.miny),h>this.maxy&&(h=this.maxy),l.length||l.push([f,r+D]),o=[f,r+s.round(D-D*((h-this.miny)/i))],l.push(o),j.push(o));for(y=[],w=[],x=u.length,M=0;M<x;M++)l=u[M],l.length&&(E.get("fillColor")&&(l.push([l[l.length-1][0],r+D]),w.push(l.slice(0)),l.pop()),l.length>2&&(l[0]=[l[0][0],l[1][1]]),y.push(l));for(x=w.length,M=0;M<x;M++)O.drawShape(w[M],E.get("fillColor"),E.get("fillColor")).append();for(void 0!==E.get("normalRangeMin")&&E.get("drawNormalOnTop")&&this.drawNormalRange(a,r,D,$,i),x=y.length,M=0;M<x;M++)O.drawShape(y[M],E.get("lineColor"),void 0,E.get("lineWidth")).append();if(P&&E.get("valueSpots"))for(C=E.get("valueSpots"),void 0===C.get&&(C=new m(C)),M=0;M<_;M++)(S=C.get(A[M]))&&O.drawCircle(a+s.round((T[M]-this.minx)*($/e)),r+s.round(D-D*((A[M]-this.miny)/i)),P,void 0,S).append();P&&E.get("spotColor")&&null!==A[n]&&O.drawCircle(a+s.round((T[T.length-1]-this.minx)*($/e)),r+s.round(D-D*((A[n]-this.miny)/i)),P,void 0,E.get("spotColor")).append(),this.maxy!==this.minyorg&&(P&&E.get("minSpotColor")&&(c=T[t.inArray(this.minyorg,A)],O.drawCircle(a+s.round((c-this.minx)*($/e)),r+s.round(D-D*((this.minyorg-this.miny)/i)),P,void 0,E.get("minSpotColor")).append()),P&&E.get("maxSpotColor")&&(c=T[t.inArray(this.maxyorg,A)],O.drawCircle(a+s.round((c-this.minx)*($/e)),r+s.round(D-D*((this.maxyorg-this.miny)/i)),P,void 0,E.get("maxSpotColor")).append())),this.lastShapeId=O.getLastShapeId(),this.canvasTop=r,O.render()}}}),t.fn.sparkline.bar=w=i(t.fn.sparkline._base,y,{type:"bar",init:function(e,i,n,a,o){var h,d,f,p,g,v,_,y,b,x,C,k,S,T,A,M,E,O,$,D,j,P,R=parseInt(n.get("barWidth"),10),I=parseInt(n.get("barSpacing"),10),N=n.get("chartRangeMin"),L=n.get("chartRangeMax"),z=n.get("chartRangeClip"),H=1/0,q=-1/0;for(w._super.init.call(this,e,i,n,a,o),v=0,_=i.length;v<_;v++)D=i[v],((h="string"==typeof D&&D.indexOf(":")>-1)||t.isArray(D))&&(A=!0,h&&(D=i[v]=u(D.split(":"))),D=c(D,null),d=s.min.apply(s,D),f=s.max.apply(s,D),d<H&&(H=d),f>q&&(q=f));this.stacked=A,this.regionShapes={},this.barWidth=R,this.barSpacing=I,this.totalBarWidth=R+I,this.width=a=i.length*R+(i.length-1)*I,this.initTarget(),z&&(S=void 0===N?-1/0:N,T=void 0===L?1/0:L),g=[],p=A?[]:g;var F=[],B=[];for(v=0,_=i.length;v<_;v++)if(A)for(M=i[v],i[v]=$=[],F[v]=0,p[v]=B[v]=0,E=0,O=M.length;E<O;E++)null!==(D=$[E]=z?r(M[E],S,T):M[E])&&(D>0&&(F[v]+=D),H<0&&q>0?D<0?B[v]+=s.abs(D):p[v]+=D:p[v]+=s.abs(D-(D<0?q:H)),g.push(D));else D=z?r(i[v],S,T):i[v],null!==(D=i[v]=l(D))&&g.push(D);this.max=k=s.max.apply(s,g),this.min=C=s.min.apply(s,g),this.stackMax=q=A?s.max.apply(s,F):k,this.stackMin=H=A?s.min.apply(s,g):C,void 0!==n.get("chartRangeMin")&&(n.get("chartRangeClip")||n.get("chartRangeMin")<C)&&(C=n.get("chartRangeMin")),void 0!==n.get("chartRangeMax")&&(n.get("chartRangeClip")||n.get("chartRangeMax")>k)&&(k=n.get("chartRangeMax")),this.zeroAxis=b=n.get("zeroAxis",!0),x=C<=0&&k>=0&&b?0:0==b?C:C>0?C:k,this.xaxisOffset=x,y=A?s.max.apply(s,p)+s.max.apply(s,B):k-C,this.canvasHeightEf=b&&C<0?this.canvasHeight-2:this.canvasHeight-1,C<x?(P=A&&k>=0?q:k,(j=(P-x)/y*this.canvasHeight)!==s.ceil(j)&&(this.canvasHeightEf-=2,j=s.ceil(j))):j=this.canvasHeight,this.yoffset=j,t.isArray(n.get("colorMap"))?(this.colorMapByIndex=n.get("colorMap"),this.colorMapByValue=null):(this.colorMapByIndex=null,this.colorMapByValue=n.get("colorMap"),this.colorMapByValue&&void 0===this.colorMapByValue.get&&(this.colorMapByValue=new m(this.colorMapByValue))),this.range=y},getRegion:function(t,e,i){var n=s.floor(e/this.totalBarWidth);return n<0||n>=this.values.length?void 0:n},getCurrentRegionFields:function(){var t,e,i=this.currentRegion,n=p(this.values[i]),r=[];for(e=n.length;e--;)t=n[e],r.push({isNull:null===t,value:t,color:this.calcColor(e,t,i),offset:i});return r},calcColor:function(e,i,n){var r,a,o=this.colorMapByIndex,s=this.colorMapByValue,l=this.options;return r=this.stacked?l.get("stackedBarColor"):i<0?l.get("negBarColor"):l.get("barColor"),0===i&&void 0!==l.get("zeroColor")&&(r=l.get("zeroColor")),s&&(a=s.get(i))?r=a:o&&o.length>n&&(r=o[n]),t.isArray(r)?r[e%r.length]:r},renderRegion:function(e,i){var n,r,a,o,l,u,c,h,f,p,g=this.values[e],m=this.options,v=this.xaxisOffset,_=[],y=this.range,b=this.stacked,w=this.target,x=e*this.totalBarWidth,C=this.canvasHeightEf,k=this.yoffset;if(g=t.isArray(g)?g:[g],c=g.length,h=g[0],o=d(null,g),p=d(v,g,!0),o)return m.get("nullColor")?(a=i?m.get("nullColor"):this.calcHighlightColor(m.get("nullColor"),m),n=k>0?k-1:k,w.drawRect(x,n,this.barWidth-1,0,a,a)):void 0;for(l=k,u=0;u<c;u++){if(h=g[u],b&&h===v){if(!p||f)continue;f=!0}r=y>0?s.floor(C*(s.abs(h-v)/y))+1:1,h<v||h===v&&0===k?(n=l,l+=r):(n=k-r,k-=r),a=this.calcColor(u,h,e),i&&(a=this.calcHighlightColor(a,m)),_.push(w.drawRect(x,n,this.barWidth-1,r-1,a,a))}return 1===_.length?_[0]:_}}),t.fn.sparkline.tristate=x=i(t.fn.sparkline._base,y,{type:"tristate",init:function(e,i,n,r,a){var o=parseInt(n.get("barWidth"),10),s=parseInt(n.get("barSpacing"),10);x._super.init.call(this,e,i,n,r,a),this.regionShapes={},this.barWidth=o,this.barSpacing=s,this.totalBarWidth=o+s,this.values=t.map(i,Number),this.width=r=i.length*o+(i.length-1)*s,t.isArray(n.get("colorMap"))?(this.colorMapByIndex=n.get("colorMap"),this.colorMapByValue=null):(this.colorMapByIndex=null,this.colorMapByValue=n.get("colorMap"),this.colorMapByValue&&void 0===this.colorMapByValue.get&&(this.colorMapByValue=new m(this.colorMapByValue))),this.initTarget()},getRegion:function(t,e,i){return s.floor(e/this.totalBarWidth)},getCurrentRegionFields:function(){var t=this.currentRegion;return{isNull:void 0===this.values[t],value:this.values[t],color:this.calcColor(this.values[t],t),offset:t}},calcColor:function(t,e){var i,n=this.values,r=this.options,a=this.colorMapByIndex,o=this.colorMapByValue;return o&&(i=o.get(t))?i:a&&a.length>e?a[e]:n[e]<0?r.get("negBarColor"):n[e]>0?r.get("posBarColor"):r.get("zeroBarColor")},renderRegion:function(t,e){var i,n,r,a,o,l,u=this.values,c=this.options,h=this.target;if(i=h.pixelHeight,r=s.round(i/2),a=t*this.totalBarWidth,u[t]<0?(o=r,n=r-1):u[t]>0?(o=0,n=r-1):(o=r-1,n=2),null!==(l=this.calcColor(u[t],t)))return e&&(l=this.calcHighlightColor(l,c)),h.drawRect(a,o,this.barWidth-1,n-1,l,l)}}),t.fn.sparkline.discrete=C=i(t.fn.sparkline._base,y,{type:"discrete",init:function(e,i,n,r,a){C._super.init.call(this,e,i,n,r,a),this.regionShapes={},this.values=i=t.map(i,Number),this.min=s.min.apply(s,i),this.max=s.max.apply(s,i),this.range=this.max-this.min,this.width=r="auto"===n.get("width")?2*i.length:this.width,this.interval=s.floor(r/i.length),this.itemWidth=r/i.length,void 0!==n.get("chartRangeMin")&&(n.get("chartRangeClip")||n.get("chartRangeMin")<this.min)&&(this.min=n.get("chartRangeMin")),void 0!==n.get("chartRangeMax")&&(n.get("chartRangeClip")||n.get("chartRangeMax")>this.max)&&(this.max=n.get("chartRangeMax")),this.initTarget(),this.target&&(this.lineHeight="auto"===n.get("lineHeight")?s.round(.3*this.canvasHeight):n.get("lineHeight"))},getRegion:function(t,e,i){return s.floor(e/this.itemWidth)},getCurrentRegionFields:function(){var t=this.currentRegion;return{isNull:void 0===this.values[t],value:this.values[t],offset:t}},renderRegion:function(t,e){var i,n,a,o,l=this.values,u=this.options,c=this.min,h=this.max,d=this.range,f=this.interval,p=this.target,g=this.canvasHeight,m=this.lineHeight,v=g-m;return n=r(l[t],c,h),o=t*f,i=s.round(v-v*((n-c)/d)),a=u.get("thresholdColor")&&n<u.get("thresholdValue")?u.get("thresholdColor"):u.get("lineColor"),e&&(a=this.calcHighlightColor(a,u)),p.drawLine(o,i,o,i+m,a)}}),t.fn.sparkline.bullet=k=i(t.fn.sparkline._base,{type:"bullet",init:function(t,e,i,n,r){var a,o,l;k._super.init.call(this,t,e,i,n,r),this.values=e=u(e),l=e.slice(),l[0]=null===l[0]?l[2]:l[0],l[1]=null===e[1]?l[2]:l[1],a=s.min.apply(s,e),o=s.max.apply(s,e),a=void 0===i.get("base")?a<0?a:0:i.get("base"),this.min=a,this.max=o,this.range=o-a,this.shapes={},this.valueShapes={},this.regiondata={},this.width=n="auto"===i.get("width")?"4.0em":n,this.target=this.$el.simpledraw(n,r,i.get("composite")),e.length||(this.disabled=!0),this.initTarget()},getRegion:function(t,e,i){var n=this.target.getShapeAt(t,e,i);return void 0!==n&&void 0!==this.shapes[n]?this.shapes[n]:void 0},getCurrentRegionFields:function(){var t=this.currentRegion;return{fieldkey:t.substr(0,1),value:this.values[t.substr(1)],region:t}},changeHighlight:function(t){var e,i=this.currentRegion,n=this.valueShapes[i];switch(delete this.shapes[n],i.substr(0,1)){case"r":e=this.renderRange(i.substr(1),t);break;case"p":e=this.renderPerformance(t);break;case"t":e=this.renderTarget(t)}this.valueShapes[i]=e.id,this.shapes[e.id]=i,this.target.replaceWithShape(n,e)},renderRange:function(t,e){var i=this.values[t],n=s.round(this.canvasWidth*((i-this.min)/this.range)),r=this.options.get("rangeColors")[t-2];return e&&(r=this.calcHighlightColor(r,this.options)),this.target.drawRect(0,0,n-1,this.canvasHeight-1,r,r)},renderPerformance:function(t){var e=this.values[1],i=s.round(this.canvasWidth*((e-this.min)/this.range)),n=this.options.get("performanceColor");return t&&(n=this.calcHighlightColor(n,this.options)),this.target.drawRect(0,s.round(.3*this.canvasHeight),i-1,s.round(.4*this.canvasHeight)-1,n,n)},renderTarget:function(t){var e=this.values[0],i=s.round(this.canvasWidth*((e-this.min)/this.range)-this.options.get("targetWidth")/2),n=s.round(.1*this.canvasHeight),r=this.canvasHeight-2*n,a=this.options.get("targetColor");return t&&(a=this.calcHighlightColor(a,this.options)),this.target.drawRect(i,n,this.options.get("targetWidth")-1,r-1,a,a)},render:function(){var t,e,i=this.values.length,n=this.target;if(k._super.render.call(this)){for(t=2;t<i;t++)e=this.renderRange(t).append(),this.shapes[e.id]="r"+t,this.valueShapes["r"+t]=e.id;null!==this.values[1]&&(e=this.renderPerformance().append(),this.shapes[e.id]="p1",this.valueShapes.p1=e.id),null!==this.values[0]&&(e=this.renderTarget().append(),this.shapes[e.id]="t0",this.valueShapes.t0=e.id),n.render()}}}),t.fn.sparkline.pie=S=i(t.fn.sparkline._base,{type:"pie",init:function(e,i,n,r,a){var o,l=0;if(S._super.init.call(this,e,i,n,r,a),this.shapes={},this.valueShapes={},this.values=i=t.map(i,Number),"auto"===n.get("width")&&(this.width=this.height),i.length>0)for(o=i.length;o--;)l+=i[o];this.total=l,this.initTarget(),this.radius=s.floor(s.min(this.canvasWidth,this.canvasHeight)/2)},getRegion:function(t,e,i){var n=this.target.getShapeAt(t,e,i);return void 0!==n&&void 0!==this.shapes[n]?this.shapes[n]:void 0},getCurrentRegionFields:function(){var t=this.currentRegion;return{isNull:void 0===this.values[t],value:this.values[t],percent:this.values[t]/this.total*100,color:this.options.get("sliceColors")[t%this.options.get("sliceColors").length],offset:t}},changeHighlight:function(t){var e=this.currentRegion,i=this.renderSlice(e,t),n=this.valueShapes[e];delete this.shapes[n],this.target.replaceWithShape(n,i),this.valueShapes[e]=i.id,this.shapes[i.id]=e},renderSlice:function(t,e){var i,n,r,a,o,l=this.target,u=this.options,c=this.radius,h=u.get("borderWidth"),d=u.get("offset"),f=2*s.PI,p=this.values,g=this.total,m=d?2*s.PI*(d/360):0;for(a=p.length,r=0;r<a;r++){if(i=m,n=m,g>0&&(n=m+f*(p[r]/g)),t===r)return o=u.get("sliceColors")[r%u.get("sliceColors").length],e&&(o=this.calcHighlightColor(o,u)),l.drawPieSlice(c,c,c-h,i,n,void 0,o);m=n}},render:function(){var t,e,i=this.target,n=this.values,r=this.options,a=this.radius,o=r.get("borderWidth");if(S._super.render.call(this)){for(o&&i.drawCircle(a,a,s.floor(a-o/2),r.get("borderColor"),void 0,o).append(),e=n.length;e--;)n[e]&&(t=this.renderSlice(e).append(),this.valueShapes[e]=t.id,this.shapes[t.id]=e);i.render()}}}),t.fn.sparkline.box=T=i(t.fn.sparkline._base,{type:"box",init:function(e,i,n,r,a){T._super.init.call(this,e,i,n,r,a),this.values=t.map(i,Number),this.width="auto"===n.get("width")?"4.0em":r,this.initTarget(),this.values.length||(this.disabled=1)},getRegion:function(){return 1},getCurrentRegionFields:function(){var t=[{field:"lq",value:this.quartiles[0]},{field:"med",value:this.quartiles[1]},{field:"uq",value:this.quartiles[2]}];return void 0!==this.loutlier&&t.push({field:"lo",value:this.loutlier}),void 0!==this.routlier&&t.push({field:"ro",value:this.routlier}),void 0!==this.lwhisker&&t.push({field:"lw",value:this.lwhisker}),void 0!==this.rwhisker&&t.push({field:"rw",value:this.rwhisker}),t},render:function(){var t,e,i,n,r,o,l,u,c,h,d,f=this.target,p=this.values,g=p.length,m=this.options,v=this.canvasWidth,_=this.canvasHeight,y=void 0===m.get("chartRangeMin")?s.min.apply(s,p):m.get("chartRangeMin"),b=void 0===m.get("chartRangeMax")?s.max.apply(s,p):m.get("chartRangeMax"),w=0;if(T._super.render.call(this)){if(m.get("raw"))m.get("showOutliers")&&p.length>5?(e=p[0],t=p[1],n=p[2],r=p[3],o=p[4],l=p[5],u=p[6]):(t=p[0],n=p[1],r=p[2],o=p[3],l=p[4]);else if(p.sort(function(t,e){return t-e}),n=a(p,1),r=a(p,2),o=a(p,3),i=o-n,m.get("showOutliers")){for(t=l=void 0,c=0;c<g;c++)void 0===t&&p[c]>n-i*m.get("outlierIQR")&&(t=p[c]),p[c]<o+i*m.get("outlierIQR")&&(l=p[c]);e=p[0],u=p[g-1]}else t=p[0],l=p[g-1];this.quartiles=[n,r,o],this.lwhisker=t,this.rwhisker=l,this.loutlier=e,this.routlier=u,d=v/(b-y+1),m.get("showOutliers")&&(w=s.ceil(m.get("spotRadius")),v-=2*s.ceil(m.get("spotRadius")),d=v/(b-y+1),e<t&&f.drawCircle((e-y)*d+w,_/2,m.get("spotRadius"),m.get("outlierLineColor"),m.get("outlierFillColor")).append(),u>l&&f.drawCircle((u-y)*d+w,_/2,m.get("spotRadius"),m.get("outlierLineColor"),m.get("outlierFillColor")).append()),f.drawRect(s.round((n-y)*d+w),s.round(.1*_),s.round((o-n)*d),s.round(.8*_),m.get("boxLineColor"),m.get("boxFillColor")).append(),f.drawLine(s.round((t-y)*d+w),s.round(_/2),s.round((n-y)*d+w),s.round(_/2),m.get("lineColor")).append(),f.drawLine(s.round((t-y)*d+w),s.round(_/4),s.round((t-y)*d+w),s.round(_-_/4),m.get("whiskerColor")).append(),f.drawLine(s.round((l-y)*d+w),s.round(_/2),s.round((o-y)*d+w),s.round(_/2),m.get("lineColor")).append(),f.drawLine(s.round((l-y)*d+w),s.round(_/4),s.round((l-y)*d+w),s.round(_-_/4),m.get("whiskerColor")).append(),f.drawLine(s.round((r-y)*d+w),s.round(.1*_),s.round((r-y)*d+w),s.round(.9*_),m.get("medianColor")).append(),m.get("target")&&(h=s.ceil(m.get("spotRadius")),f.drawLine(s.round((m.get("target")-y)*d+w),s.round(_/2-h),s.round((m.get("target")-y)*d+w),s.round(_/2+h),m.get("targetColor")).append(),f.drawLine(s.round((m.get("target")-y)*d+w-h),s.round(_/2),s.round((m.get("target")-y)*d+w+h),s.round(_/2),m.get("targetColor")).append()),f.render()}}}),E=i({init:function(t,e,i,n){this.target=t,this.id=e,this.type=i,this.args=n},append:function(){return this.target.appendShape(this),this}}),O=i({_pxregex:/(\d+)(px)?\s*$/i,init:function(e,i,n){e&&(this.width=e,this.height=i,this.target=n,this.lastShapeId=null,n[0]&&(n=n[0]),t.data(n,"_jqs_vcanvas",this))},drawLine:function(t,e,i,n,r,a){return this.drawShape([[t,e],[i,n]],r,a)},drawShape:function(t,e,i,n){return this._genShape("Shape",[t,e,i,n])},drawCircle:function(t,e,i,n,r,a){return this._genShape("Circle",[t,e,i,n,r,a])},drawPieSlice:function(t,e,i,n,r,a,o){return this._genShape("PieSlice",[t,e,i,n,r,a,o])},drawRect:function(t,e,i,n,r,a){return this._genShape("Rect",[t,e,i,n,r,a])},getElement:function(){return this.canvas},getLastShapeId:function(){return this.lastShapeId},reset:function(){alert("reset not implemented")},_insert:function(e,i){t(i).html(e)},_calculatePixelDims:function(e,i,n){var r;r=this._pxregex.exec(i),this.pixelHeight=r?r[1]:t(n).height(),r=this._pxregex.exec(e),this.pixelWidth=r?r[1]:t(n).width()},_genShape:function(t,e){var i=R++;return e.unshift(i),new E(this,i,t,e)},appendShape:function(t){alert("appendShape not implemented")},replaceWithShape:function(t,e){alert("replaceWithShape not implemented")},insertAfterShape:function(t,e){alert("insertAfterShape not implemented")},removeShapeId:function(t){alert("removeShapeId not implemented")},getShapeAt:function(t,e,i){alert("getShapeAt not implemented")},render:function(){alert("render not implemented")}}),$=i(O,{init:function(e,i,n,r){$._super.init.call(this,e,i,n),this.canvas=o.createElement("canvas"),n[0]&&(n=n[0]),t.data(n,"_jqs_vcanvas",this),t(this.canvas).css({display:"inline-block",width:e,height:i,verticalAlign:"top"}),this._insert(this.canvas,n),this._calculatePixelDims(e,i,this.canvas),this.canvas.width=this.pixelWidth,this.canvas.height=this.pixelHeight,this.interact=r,this.shapes={},this.shapeseq=[],this.currentTargetShapeId=void 0,t(this.canvas).css({width:this.pixelWidth,height:this.pixelHeight})},_getContext:function(t,e,i){var n=this.canvas.getContext("2d");return void 0!==t&&(n.strokeStyle=t),n.lineWidth=void 0===i?1:i,void 0!==e&&(n.fillStyle=e),n},reset:function(){this._getContext().clearRect(0,0,this.pixelWidth,this.pixelHeight),this.shapes={},this.shapeseq=[],this.currentTargetShapeId=void 0},_drawShape:function(t,e,i,n,r){var a,o,s=this._getContext(i,n,r);for(s.beginPath(),s.moveTo(e[0][0]+.5,e[0][1]+.5),a=1,o=e.length;a<o;a++)s.lineTo(e[a][0]+.5,e[a][1]+.5);void 0!==i&&s.stroke(),void 0!==n&&s.fill(),void 0!==this.targetX&&void 0!==this.targetY&&s.isPointInPath(this.targetX,this.targetY)&&(this.currentTargetShapeId=t)},_drawCircle:function(t,e,i,n,r,a,o){var l=this._getContext(r,a,o);l.beginPath(),l.arc(e,i,n,0,2*s.PI,!1),void 0!==this.targetX&&void 0!==this.targetY&&l.isPointInPath(this.targetX,this.targetY)&&(this.currentTargetShapeId=t),void 0!==r&&l.stroke(),void 0!==a&&l.fill()},_drawPieSlice:function(t,e,i,n,r,a,o,s){var l=this._getContext(o,s);l.beginPath(),l.moveTo(e,i),l.arc(e,i,n,r,a,!1),l.lineTo(e,i),l.closePath(),void 0!==o&&l.stroke(),s&&l.fill(),void 0!==this.targetX&&void 0!==this.targetY&&l.isPointInPath(this.targetX,this.targetY)&&(this.currentTargetShapeId=t)},_drawRect:function(t,e,i,n,r,a,o){return this._drawShape(t,[[e,i],[e+n,i],[e+n,i+r],[e,i+r],[e,i]],a,o)},appendShape:function(t){return this.shapes[t.id]=t,this.shapeseq.push(t.id),this.lastShapeId=t.id,t.id},replaceWithShape:function(t,e){var i,n=this.shapeseq;for(this.shapes[e.id]=e,i=n.length;i--;)n[i]==t&&(n[i]=e.id);delete this.shapes[t]},replaceWithShapes:function(t,e){var i,n,r,a=this.shapeseq,o={};for(n=t.length;n--;)o[t[n]]=!0;for(n=a.length;n--;)i=a[n],o[i]&&(a.splice(n,1),delete this.shapes[i],r=n);for(n=e.length;n--;)a.splice(r,0,e[n].id),this.shapes[e[n].id]=e[n]},insertAfterShape:function(t,e){var i,n=this.shapeseq;for(i=n.length;i--;)if(n[i]===t)return n.splice(i+1,0,e.id),void(this.shapes[e.id]=e)},removeShapeId:function(t){var e,i=this.shapeseq;for(e=i.length;e--;)if(i[e]===t){i.splice(e,1);break}delete this.shapes[t]},getShapeAt:function(t,e,i){return this.targetX=e,this.targetY=i,this.render(),this.currentTargetShapeId},render:function(){var t,e,i,n=this.shapeseq,r=this.shapes,a=n.length,o=this._getContext();for(o.clearRect(0,0,this.pixelWidth,this.pixelHeight),i=0;i<a;i++)t=n[i],e=r[t],this["_draw"+e.type].apply(this,e.args);this.interact||(this.shapes={},this.shapeseq=[])}}),D=i(O,{init:function(e,i,n){var r;D._super.init.call(this,e,i,n),n[0]&&(n=n[0]),t.data(n,"_jqs_vcanvas",this),this.canvas=o.createElement("span"),t(this.canvas).css({display:"inline-block",position:"relative",overflow:"hidden",width:e,height:i,margin:"0px",padding:"0px",verticalAlign:"top"}),this._insert(this.canvas,n),this._calculatePixelDims(e,i,this.canvas),this.canvas.width=this.pixelWidth,this.canvas.height=this.pixelHeight,r='<v:group coordorigin="0 0" coordsize="'+this.pixelWidth+" "+this.pixelHeight+'" style="position:absolute;top:0;left:0;width:'+this.pixelWidth+"px;height="+this.pixelHeight+'px;"></v:group>',this.canvas.insertAdjacentHTML("beforeEnd",r),this.group=t(this.canvas).children()[0],this.rendered=!1,this.prerender=""},_drawShape:function(t,e,i,n,r){var a,o,s,l,u,c,h=[];for(c=0,u=e.length;c<u;c++)h[c]=e[c][0]+","+e[c][1];return a=h.splice(0,1),r=void 0===r?1:r,o=void 0===i?' stroked="false" ':' strokeWeight="'+r+'px" strokeColor="'+i+'" ',s=void 0===n?' filled="false"':' fillColor="'+n+'" filled="true" ',l=h[0]===h[h.length-1]?"x ":"",'<v:shape coordorigin="0 0" coordsize="'+this.pixelWidth+" "+this.pixelHeight+'"  id="jqsshape'+t+'" '+o+s+' style="position:absolute;left:0px;top:0px;height:'+this.pixelHeight+"px;width:"+this.pixelWidth+'px;padding:0px;margin:0px;"  path="m '+a+" l "+h.join(", ")+" "+l+'e"> </v:shape>'},_drawCircle:function(t,e,i,n,r,a,o){var s,l;return e-=n,i-=n,s=void 0===r?' stroked="false" ':' strokeWeight="'+o+'px" strokeColor="'+r+'" ',l=void 0===a?' filled="false"':' fillColor="'+a+'" filled="true" ','<v:oval  id="jqsshape'+t+'" '+s+l+' style="position:absolute;top:'+i+"px; left:"+e+"px; width:"+2*n+"px; height:"+2*n+'px"></v:oval>'},_drawPieSlice:function(t,e,i,n,r,a,o,l){var u,c,h,d,f,p,g;if(r===a)return"";if(a-r==2*s.PI&&(r=0,a=2*s.PI),c=e+s.round(s.cos(r)*n),h=i+s.round(s.sin(r)*n),d=e+s.round(s.cos(a)*n),f=i+s.round(s.sin(a)*n),c===d&&h===f){if(a-r<s.PI)return"";c=d=e+n,h=f=i}return c===d&&h===f&&a-r<s.PI?"":(u=[e-n,i-n,e+n,i+n,c,h,d,f],p=void 0===o?' stroked="false" ':' strokeWeight="1px" strokeColor="'+o+'" ',g=void 0===l?' filled="false"':' fillColor="'+l+'" filled="true" ','<v:shape coordorigin="0 0" coordsize="'+this.pixelWidth+" "+this.pixelHeight+'"  id="jqsshape'+t+'" '+p+g+' style="position:absolute;left:0px;top:0px;height:'+this.pixelHeight+"px;width:"+this.pixelWidth+'px;padding:0px;margin:0px;"  path="m '+e+","+i+" wa "+u.join(", ")+' x e"> </v:shape>')},_drawRect:function(t,e,i,n,r,a,o){return 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Are you sure?":!1,Dataset:!1,Annotation:!1,"This history is empty. Click 'Get Data' on the left tool menu to start":!1,"You must be logged in to create histories":!1,"Unable to purge dataset":!1,"Cannot display datasets removed from disk":!1,"This dataset must finish uploading before it can be viewed":!1,"This dataset is not yet viewable":!1,"View data":!1,Download:!1,"Download dataset":!1,"Additional files":!1,"View details":!1,"This is a new dataset and not all of its data are available yet":!1,"You do not have permission to view this dataset":!1,"The job creating this dataset was cancelled before completion":!1,"This job is waiting to run":!1,"This dataset is currently uploading":!1,"Metadata is being auto-detected":!1,"This job is currently running":!1,'This job is paused. Use the "Resume Paused Jobs" in the history menu to resume':!1,"An error occurred with this dataset":!1,"No data":!1,"An error occurred setting the metadata for this dataset":!1,"There was an error getting the data for this dataset":!1,"This dataset has been deleted and removed from disk":!1,"This dataset has been deleted":!1,"This dataset has been hidden":!1,format:!1,database:!1,"Edit attributes":!1,"Cannot edit attributes of datasets removed from disk":!1,"Undelete dataset to edit attributes":!1,"This dataset must finish uploading before it can be edited":!1,"This dataset is not yet editable":!1,Delete:!1,"Dataset is already deleted":!1,"View or report this error":!1,"Run this job again":!1,Visualize:!1,"Visualize in":!1,"Undelete it":!1,"Permanently remove it from disk":!1,"Unhide it":!1,"You may be able to":!1,"set it manually or retry auto-detection":!1,"Edit dataset tags":!1,"Edit dataset annotation":!1,"Tool Help":!1,"Reset passwords":!1,"Search Tool Shed":!1,"Monitor 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the data source.":!1,"Next in History":!1,"Previous in History":!1,"Chat online":!1,"Multiple collections":!1,"Dataset collections":!1,"Dataset collection":!1,"Multiple datasets":!1,"Single dataset":!1,"Download from URL or upload files from disk":!1,"tool tooltip":!1},__ja:{"Analyze Data":"データ解析",Workflow:"ワークフロー","Shared Data":"共有データ","Data Libraries":"データライブラリ",Histories:"ヒストリー",Workflows:"ワークフロー",Visualizations:"可視化",Pages:"ページ",Visualization:"可視化","New Track Browser":"新しい Track Browser","Saved Visualizations":"保存された可視化","Interactive Environments":"インタラクティブ環境",Admin:"管理者",Help:"ヘルプ",Support:"サポート",Search:"検索","Mailing Lists":"メーリングリスト",Videos:"動画","How to Cite Galaxy":"Galaxy を引用する方法","Interactive Tours":"インタラクティブツアー",User:"ユーザー",Login:"ログイン",Register:"登録","Login or Register":"ログイン/登録",Preferences:"設定","Custom Builds":"カスタムビルド",Logout:"ログアウト","Saved Histories":"保存されたヒストリ","Saved Datasets":"保存されたデータセット","Saved Pages":"保存されたページ","Account and saved data":"アカウントと保存されたデータ","Account registration or login":"アカウントの登録またはログイン","Support, contact, and community":"サポート、コンタクト、コミュニティ","Administer this Galaxy":"この Galaxy の管理者","Visualize datasets":"データセットの可視化","Access published resources":"パブリッシュされたリソースへアクセス","Chain tools into workflows":"ツールとワークフローの連携","Analysis home view":"解析ホーム","History Lists":"ヒストリーリスト","Histories Shared with Me":"私と共有されているヒストリー","Current History":"現在のヒストリー","Create New":"新しく作成","Copy History":"ヒストリーをコピーする","Share or Publish":"共有またはパブリッシュ","Show Structure":"構造を見る","Extract Workflow":"ワークフローを抽出","Delete Permanently":"永久に削除","Dataset Actions":"データセットの操作","Copy Datasets":"データセットをコピー","Dataset Security":"データセットのセキュリティ","Resume Paused Jobs":"一時停止したジョブの再開","Collapse Expanded Datasets":"展開されたデータセットを畳む","Unhide Hidden Datasets":"隠されたデータセットを表示する","Delete Hidden Datasets":"隠されたデータセットを削除する","Purge Deleted Datasets":"削除されたデータセットを永久に削除",Downloads:"ダウンロード","Export Tool Citations":"ツールの引用をエクスポート","Export History to File":"ヒストリーをファイルへエクスポート","Other Actions":"その他のアクション","Import from File":"ファイルからの読み込み",Webhooks:"Webhooks","This history is empty":"ヒストリーは空です","No matching datasets found":"一致するデータセットが見つかりませんでした","Search datasets":"データセットを検索する","You are currently viewing a deleted history!":"消去したヒストリーをみています。","You are over your disk quota":"あなたはディスククォータを超えている",All:"一式",None:"なし","For all selected":"各項目を","Edit history tags":"ヒストリーのタグを編集","Edit history annotation":"ヒストリーのアノテーションを編集","Click to rename history":"ヒストリーの名前を変更するにはクリック","Operations on multiple datasets":"複数のデータセットに対する操作","Permanently delete datasets":"永久にデータセットを削除","This will permanently remove the data in your datasets. Are you sure?":"これは永久にあなたのデータセット内のデータを削除します。本当に？",Dataset:"データセット","This history is empty. Click 'Get Data' on the left tool menu to start":"ヒストリーは空です。解析をはじめるには、左パネルの 'データ取得' をクリック","You must be logged in to create histories":"ヒストリーを作成するためにはログインする必要があります","View data":"データを表示",Download:"ダウンロード","Download dataset":"データセットをダウンロード","View details":"細部を表示","This job is waiting to run":"ジョブは実行待ちです","This job is currently running":"ジョブは実行中です","An error occurred with this dataset":"このジョブの実行中に発生したエラー","No data":"データ無し","This dataset has been deleted and removed from disk":"このデータセットは、永続的にディスクから削除されました","This dataset has been deleted":"このデータセットは削除されました","This dataset has been hidden":"このデータセットは、非表示にされた",format:"フォーマット",database:"データベース","Edit attributes":"変数を編集する",Delete:"削除する","View or report this error":"このエラーを届け出る","Run this job again":"もう一度このジョブを実行する",Visualize:"可視化する","Undelete it":"復元する","Permanently remove it from disk":"永久にディスクから削除","Unhide it":"非表示解除する","Search Tool Shed":"Tool Shed で探す","Search Tool Shed (Beta)":"Tool Shed (Beta) で探す","Monitor installing repositories":"インストールレポジトリのモニタ","Manage installed tools":"インストールしたツールの管理","Reset metadata":"メタデータのリセット","Download local tool":"ローカルツールのダウンロード","Tool lineage":"ツール系統","Reload a tool's configuration":"ツールのコンフィグのリロード","Review tool migration stages":"ツール移行ステージのレビュー","View Tool Error Logs":"ツールのエラーログ","Manage Display Whitelist":"表示ホワイトリストの管理","Manage Tool Dependencies":"ツール依存関係の管理",Users:"ユーザー",Groups:"グループ","API keys":"API キー","Impersonate a user":"ユーザー偽装",Data:"データ",Quotas:"クォータ",Roles:"ロール","Local data":"ローカルデータ","Form definitions":"フォーム定義",Administration:"管理",Server:"サーバー","Tools and Tool Shed":"ツールと Tool Shed","User Management":"ユーザ管理","Form Definitions":"フォーム定義","Your workflows":"あなたのワークフロー"},__fr:{"Analyze Data":"Analyse de données",Workflow:"Workflow","Shared Data":"Données partagées","Data Libraries":"Bibliothèque de données",Histories:!1,Workflows:!1,Visualizations:"Visualisations",Pages:"Pages",Visualization:!1,"New Track Browser":"Nouveau Navigateur de Tracks/Pistes","Saved Visualizations":"Visualisations sauvegardées","Interactive Environments":"Environnements interactifs",Admin:"Admin",Help:"Aide",Support:"Assistance",Search:!1,"Mailing Lists":"Liste de diffusion",Videos:"Vidéos",Wiki:"Documentations","How to Cite Galaxy":"Comment citer Galaxy","Interactive Tours":"Guides interactifs",User:"Utilisateur",Login:"Authentification",Register:"Enregistrement","Login or Register":"Authentification et Enregistrement","Logged in as":"Authentifié en tant que",Preferences:"Préférences","Custom Builds":"Mes génomes Builds de référence",Logout:"Déconnexion","Saved Histories":"Historiques sauvegardés","Saved Datasets":"Jeux de données sauvegardés","Saved Pages":"Pages sauvegardées","Account and saved data":"Compte et données sauvegardées","Account registration or login":"Enregistrement ou authentification","Support, contact, and community":"Support,contact et communauté","Administer this Galaxy":"Outils Admin","Visualize datasets":"Visualiser les jeux de données","Access published resources":"Accéder aux données partagées","Chain tools into workflows":"Relier outils dans un workflow","Analysis home view":"Accueil analyse de données","History Lists":"Tableaux des historiques","Histories Shared with Me":"Historiques partagés avec moi","Current History":"Cet Historique","Create New":"Créer un nouveau","Copy History":"Copier l'Historique","Share or Publish":"Partager et publier","Show Structure":"Montrer la structure","Extract Workflow":"Extraire un Workflow","Delete Permanently":"Supprimer définitivement","Dataset Actions":"Actions sur les jeux de données","Copy Datasets":"Copier des jeux de données","Dataset Security":"Permissions/Sécurité","Resume Paused Jobs":"Reprendre les processus en pause","Collapse Expanded Datasets":"Réduire les données étendues","Unhide Hidden Datasets":"Afficher les données cachées","Delete Hidden Datasets":"Supprimer les données cachées","Purge Deleted Datasets":"Purger les données supprimées",Downloads:"Télécharger","Export Tool Citations":"Exporter les citations des outils","Export History to File":"Exporter l'Historique dans un fichier","Other Actions":"Autres actions","Import from File":"Importer depuis un fichier",Webhooks:"Webhooks","This history is empty":"Cet historique est vide","No matching datasets found":"Aucunes données correspondantes n'ont été trouvées","An error occurred while getting updates from the server":"Une erreur s'est produite lors de la réception des données depuis le serveur","Please contact a Galaxy administrator if the problem persists":"Veuillez contacter un administrateur de l'instance Galaxy si ce problème persiste","search datasets":"Rechercher des données","You are currently viewing a deleted history!":"Vous consultez actuellement un historique supprimé!","You are over your disk quota":"Vous avez dépassé votre quota d'espace disque","Tool execution is on hold until your disk usage drops below your allocated quota":"L'exécution de l'outil est en attente tant que votre utilisation d'espace disque dépasse le quota attribué",All:"Tout",None:"Aucun","For all selected":"Pour toute la sélection","Edit history tags":"Editer les mots-clés de l'historique","Edit history Annotation":"Editer l'annotation de l'historique","Click to rename history":"Cliquer pour renommer l'historique","Operations on multiple datasets":"Opérer sur plusieurs jeux de données en même temps","Hide datasets":"Cacher les jeux de données","Unhide datasets":"Afficher les jeux de données cachés","Delete datasets":"Supprimer les jeux de données","Undelete datasets":"Restaurer les jeux de données supprimés","Permanently delete datasets":"Supprimer définitivement les jeux de données","This will permanently remove the data in your datasets. Are you sure?":"Cela supprimera de manière permanente les données de votre historique. Êtes-vous certain?",Dataset:"Jeu de données",Annotation:"Annotation","This history is empty. Click 'Get Data' on the left tool menu to start":"Cet historique est vide. Cliquer sur 'Get Data' au niveau du menu d'outils à gauche pour démarrer","You must be logged in to create histories":"Vous devez être connecté pour créer un historique","load your own data":"Charger vos propres données","get data from an external source":"Charger des données depuis une source externe","Include Deleted Datasets":"Inclure les jeux de données supprimés","Include Hidden Datasets":"Inclure les jeux de données cachés","Unable to purge dataset":"Impossible de purger le jeu de données","Cannot display datasets removed from disk":"Impossible de visualiser les jeux de données supprimés du disque","This dataset must finish uploading before it can be viewed":"Le jeu de données doit être totalement téléversé avant de pouvoir être visualiser","This dataset is not yet viewable":"Ce jeu de données n'est pas visualisable","View data":"Voir les données",Download:!1,"Download dataset":"Télécharger le jeu de données","Additional files":"Fichiers additionnels","View details":"Voir les détails","This is a new dataset and not all of its data are available yet":"Il s'agit d'un nouveau jeu de données et seule une partie des données est accessible pour le moment","You do not have permission to view this dataset":"Vous n'avez pas la permission de voir ce jeu de données","The job creating this dataset was cancelled before completion":"Le processus à l'origine de ce jeu de données a été annulé prématurément","This job is waiting to run":"Ce calcul est en attente de traitement","This dataset is currently uploading":"Ce jeu de données est en cours de téléversement","Metadata is being auto-detected":"Les métadonnées sont auto-détectées","This job is currently running":"Le traitement est en cours",'This job is paused. Use the "Resume Paused Jobs" in the history menu to resume':'Ce traitement est en pause. Utilisez le "Relancer les traitements en pause" dans le menu d\'historique pour le relancer',"An error occurred with this dataset":"Une erreur est survenue avec ce jeu de données","No data":"Aucune donnée","An error occurred setting the metadata for this dataset":"Une erreur est survenue pendant la récupération des métadonnées de ce jeu de données","There was an error getting the data for this dataset":"Il est survenu une erreur durant la récupération du contenu de ce jeu de données","This dataset has been deleted and removed from disk":"Ce jeu de données a été supprimé et effacé du disque","This dataset has been deleted":"Ce jeu de données a été supprimé","This dataset has been hidden":"Ce jeu de données a été caché",format:"format",database:"génome de référence","Edit attributes":"Editer les attributs","Cannot edit attributes of datasets removed from disk":"Impossible d'éditer les attributs de jeux de données effacés du disque","Undelete dataset to edit attributes":"Restaurer le jeu de données pour en éditer les attributs","This dataset must finish uploading before it can be edited":"Ce jeu de données doit être entièrement téléversé avant toute modification","This dataset is not yet editable":"Ce jeu de données n'est pas encore éditable",Delete:"Supprimer","Dataset is already deleted":"Le jeu de données est déjà supprimé","View or report this error":"Voir ou remonter cette erreur","Run this job again":"Exécuter ce traitement à nouveau",Visualize:!1,"Visualize in":"Visualiser via","Undelete it":"Restaurer","Permanently remove it from disk":"Supprimer définitivement du disque","Unhide it":"Rendre visible","You may be able to":"Vous devriez être en mesure de","set it manually or retry auto-detection":"Traitez le manuellement ou retenter la détection automatique","Edit dataset tags":"Editer les mots-clés du jeu de données","Edit dataset annotation":"Editer les annotations du jeu de données","Tool Help":!1,"Reset passwords":!1,"Search Tool Shed":!1,"Monitor installing repositories":!1,"Manage installed tools":!1,"Reset metadata":!1,"Download local tool":!1,"Tool lineage":!1,"Reload a tool's configuration":!1,"Review tool migration stages":!1,"View Tool Error Logs":!1,"Manage Display Whitelist":!1,"Manage Tool Dependencies":!1,Users:!1,Groups:!1,"API keys":!1,"Impersonate a user":!1,Data:!1,Quotas:!1,Roles:!1,"Local data":!1,"Form Definitions":!1,"Enable/Disable Scratchbook":!1,"Show/Hide Scratchbook":!1,Tags:"Mots-clés","Edit annotation":"Editer les annotations",Subscript:!1,Superscript:!1,Trackster:!1,"Any additional comments you can provide regarding what you were doing at the time of the bug.":!1,"Your email address":!1,Report:!1,"Error Report":!1,"Dataset details":!1,"Save permissions.":!1,"Change the datatype to a new type.":!1,"Convert the datatype to a new format.":!1,"Save attributes of the dataset.":!1,"Change data type":!1,"Edit dataset attributes":!1,"Save permissions":!1,"Manage dataset permissions":!1,"Change datatype":!1,"Convert 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l,u=a+s,c=n+u;c<=r?l=0:(c=r,l=u-(c+1-n)),0!==l&&(o-=l)<1&&(o=1),e+='<tr id="page-links-row">',t.show_item_checkboxes&&(e+="<td></td>"),e+='<td colspan="100"><span id="page-link-container">Page:',o>1&&(e+='<span class="page-link" id="page-link-1"><a href="javascript:void(0);" page_num="1" onclick="return false;">1</a></span> ...');for(var h=o;h<c+1;h++)h==t.cur_page_num?e+='<span class="page-link inactive-link" id="page-link-'+h+'">'+h+"</span>":e+='<span class="page-link" id="page-link-'+h+'"><a href="javascript:void(0);" onclick="return false;" page_num="'+h+'">'+h+"</a></span>";c<r&&(e+='...<span class="page-link" id="page-link-'+r+'"><a href="javascript:void(0);" onclick="return false;" page_num="'+r+'">'+r+"</a></span>"),e+="</span>",e+='\n                    <span class="page-link" id="show-all-link-span"> | <a href="javascript:void(0);" onclick="return false;" page_num="all">Show All</a></span>\n                    </td>\n                </tr>'}if(t.show_item_checkboxes){e+='\n   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o="<tr>";if("advanced"==i.filterable&&(o+='<td align="left" style="padding-left: 10px">'+r+":</td>"),o+='<td style="padding-bottom: 1px;">',i.is_text){o+='<form class="text-filter-form" column_key="'+a+'" action="'+e.url+'" method="get" >';var s=!0,l=!1,u=void 0;try{for(var c,h=e.columns[Symbol.iterator]();!(s=(c=h.next()).done);s=!0){var d=c.value,f=n[d.key];f&&"All"!=f&&(d.is_text&&(f=JSON.stringify(f)),o+='<input type="hidden" id="'+d.key+'" name="f-'+d.key+'" value="'+f+'"/>')}}catch(t){l=!0,u=t}finally{try{!s&&h.return&&h.return()}finally{if(l)throw u}}o+='<span id="'+a+'-filtering-criteria">';var p=n[a];if(p){var g=t.type(p);if("string"==g&&"All"!=p&&(o+=this.filter_element(a,p)),"array"==g)for(var m in p){var v=p;v=v.slice(m),o+=this.filter_element(a,p[m])}}o+="</span>";var _="",y=20;"standard"==i.filterable&&(_=i.label.toLowerCase(),_.length<20&&(y=_.length),y+=4),o+='\n                <span class="search-box">\n                    <input class="search-box-input" 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d=function(t,e,i,n,r){h.call(this,t,e,i,n,r)};d.prototype.default_prefs={min_value:void 0,max_value:void 0,mode:"Histogram",color:"#000",overflow_color:"#F66"},d.prototype.draw=function(t,e,i,n){var a=!1,o=this.prefs.min_value,s=this.prefs.max_value,l=s-o,u=i,c=this.view_start,h=this.mode,d=this.data;t.save();var f=Math.round(i+o/l*i);"Intensity"!==h&&(t.fillStyle="#aaa",t.fillRect(0,f,e,1)),t.beginPath();var p,g,m;m=d.length>1?r.map(d.slice(0,-1),function(t,e){return Math.ceil((d[e+1][0]-d[e][0])*n)}):[10];for(var v,_=this.prefs.block_color||this.prefs.color,y=parseInt(_.slice(1),16),b=(16711680&y)>>16,w=(65280&y)>>8,x=255&y,C=!1,k=!1,S=0,T=d.length;S<T;S++)if(t.fillStyle=t.strokeStyle=_,C=k=!1,v=m[S],p=Math.floor((d[S][0]-c-.5)*n),null!==(g=d[S][1])){if(g<o?(k=!0,g=o):g>s&&(C=!0,g=s),"Histogram"===h)g=Math.round(g/l*u),t.fillRect(p,f,v,-g);else if("Intensity"===h){var A=(g-o)/l,M=Math.round(b+(255-b)*(1-A)),E=Math.round(w+(255-w)*(1-A)),O=Math.round(x+(255-x)*(1-A));t.fillStyle="rgb("+M+","+E+","+O+")",t.fillRect(p,0,v,u)}else g=Math.round(u-(g-o)/l*u),a?t.lineTo(p,g):(a=!0,"Filled"===h?(t.moveTo(p,u),t.lineTo(p,g)):t.moveTo(p,g));if(t.fillStyle=this.prefs.overflow_color,C||k){var $;"Histogram"===h||"Intensity"===h?$=v:(p-=2,$=4),C&&t.fillRect(p,0,$,3),k&&t.fillRect(p,u-3,$,3)}t.fillStyle=_}else a&&"Filled"===h&&t.lineTo(p,u),a=!1;"Filled"===h?(a&&(t.lineTo(p,f),t.lineTo(0,f)),t.fill()):t.stroke(),t.restore()};var f=function(t){this.feature_positions={},this.slot_height=t,this.translation=0,this.y_translation=0};f.prototype.map_feature_data=function(t,e,i,n){this.feature_positions[e]||(this.feature_positions[e]=[]),this.feature_positions[e].push({data:t,x_start:i,x_end:n})},f.prototype.get_feature_data=function(t,e){var i,n=Math.floor((e-this.y_translation)/this.slot_height);if(!this.feature_positions[n])return null;t+=this.translation;for(var r=0;r<this.feature_positions[n].length;r++)if(i=this.feature_positions[n][r],t>=i.x_start&&t<=i.x_end)return i.data};var p=function(t,e,i,n,r,a,o){h.call(this,t,e,i,n,r),this.alpha_scaler=a||new u,this.height_scaler=o||new u,this.max_label_length=200};p.prototype.default_prefs={block_color:"#FFF",connector_color:"#FFF"},r.extend(p.prototype,{get_required_height:function(t,e){var i=this.get_row_height(),n=i,r=this.mode;return"no_detail"!==r&&"Squish"!==r&&"Pack"!==r||(i=t*n),i+this.get_top_padding(e)},get_top_padding:function(t){return 0},draw:function(t,e,i,n,r){var a=this.data,o=this.view_start,s=this.view_end;t.save(),t.fillStyle=this.prefs.block_color,t.textAlign="right";for(var l,u=this.get_row_height(),h=new f(u),d=[],p=0,g=a.length;p<g;p++){var m=a[p],v=m[0],_=m[1],y=m[2],b=r&&void 0!==r[v]?r[v].slot:null;("Dense"===this.mode||null!==b)&&_<s&&y>o&&(l=this.draw_element(t,this.mode,m,b,o,s,n,u,e),h.map_feature_data(m,b,l[0],l[1]),(_<o||y>s)&&d.push(m))}return t.restore(),h.y_translation=this.get_top_padding(e),new c({incomplete_features:d,feature_mapper:h})},draw_element:function(t,e,i,n,r,a,o,s,l){return[0,0]}});var g=function(t,e,i,n,r,a,o){p.call(this,t,e,i,n,r,a,o),this.draw_background_connector=!0,this.draw_individual_connectors=!1};r.extend(g.prototype,p.prototype,{get_row_height:function(){var t=this.mode;return"Dense"===t?10:"no_detail"===t?3:"Squish"===t?5:10},draw_element:function(t,e,i,n,r,a,o,s,l){var u,c=(i[0],i[1]),h=i[2],d=i[3],f=i[4],p=Math.floor(Math.max(0,(c-r-.5)*o)),g=Math.ceil(Math.min(l,Math.max(0,(h-r-.5)*o))),m=p,v=g,u=("Dense"===e?0:0+n)*s+this.get_top_padding(l),_=null,y=null,b=f&&"+"!==f&&"."!==f?this.prefs.reverse_strand_color:this.prefs.block_color,w=this.prefs.label_color;if(t.globalAlpha=this.alpha_scaler.gen_val(i),"Dense"===e&&(n=1),"no_detail"===e)t.fillStyle=b,t.fillRect(p,u+5,g-p,1);else{var x=i[5],C=i[6],k=i[7],S=!0;x&&C&&(_=Math.floor(Math.max(0,(x-r)*o)),y=Math.ceil(Math.min(l,Math.max(0,(C-r)*o))));var T,A;if("Squish"===e?(T=1,A=3,S=!1):(T=5,A=9),k){var M,E;"Squish"===e||"Dense"===e?(M=u+Math.floor(1.5)+1,E=1):f?(M=u,E=A):(M+=2.5,E=1),this.draw_background_connector&&("Squish"===e||"Dense"===e?t.fillStyle="#ccc":f?"+"===f?t.fillStyle=t.canvas.manager.get_pattern("right_strand"):"-"===f&&(t.fillStyle=t.canvas.manager.get_pattern("left_strand")):t.fillStyle="#ccc",t.fillRect(p,M,g-p,E));for(var O=0,$=k.length;O<$;O++){var D,j,P=k[O],R=Math.floor(Math.max(0,(P[0]-r-.5)*o)),I=Math.ceil(Math.min(l,Math.max((P[1]-r-.5)*o)));if(!(R>I)){if(t.fillStyle=b,t.fillRect(R,u+(A-T)/2+1,I-R,T),void 0!==_&&C>x&&!(R>y||I<_)){var N=Math.max(R,_),L=Math.min(I,y);t.fillRect(N,u+1,L-N,A),1===k.length&&"Pack"===e&&("+"===f?t.fillStyle=t.canvas.manager.get_pattern("right_strand_inv"):"-"===f&&(t.fillStyle=t.canvas.manager.get_pattern("left_strand_inv")),N+14<L&&(N+=2,L-=2),t.fillRect(N,u+1,L-N,A))}this.draw_individual_connectors&&D&&this.draw_connector(t,D,j,R,I,u),D=R,j=I}}if("Pack"===e){t.globalAlpha=1,t.fillStyle="white";var z=this.height_scaler.gen_val(i),H=Math.ceil(A*z),q=Math.round((A-H)/2);1!==z&&(t.fillRect(p,M+1,g-p,q),t.fillRect(p,M+A-q+1,g-p,q))}}else t.fillStyle=b,t.fillRect(p,u+1,g-p,A),f&&S&&("+"===f?t.fillStyle=t.canvas.manager.get_pattern("right_strand_inv"):"-"===f&&(t.fillStyle=t.canvas.manager.get_pattern("left_strand_inv")),t.fillRect(p,u+1,g-p,A));t.globalAlpha=1,d&&"Pack"===e&&c>r&&(t.fillStyle=w,0===r&&p-t.measureText(d).width<0?(t.textAlign="left",t.fillText(d,g+2,u+8,this.max_label_length),v+=t.measureText(d).width+2):(t.textAlign="right",t.fillText(d,p-2,u+8,this.max_label_length),m-=t.measureText(d).width+2))}return t.globalAlpha=1,[m,v]}});var m=function(t,e,i,n,r,a,o,s,l){p.call(this,t,e,i,n,r,a,o),this.ref_seq=s?s.data:null,this.base_color_fn=l};r.extend(m.prototype,p.prototype,{get_row_height:function(){var t,e=this.mode;return"Dense"===e?t=10:"Squish"===e?t=5:(t=10,this.prefs.show_insertions&&(t*=2)),t},_parse_cigar:function(t){var e="MIDNSHP=X",i=[[0,0]],n=i[0],a=0,o=r.map(t.match(/[0-9]+[MIDNSHP=X]/g),function(t){var r=parseInt(t.slice(0,-1),10),o=t.slice(-1);return"N"===o?0!==n[1]&&(n=[a+r,a+r],i.push(n)):-1==="ISHP".indexOf(o)&&(n[1]+=r,a+=r),[e.indexOf(o),r]});return{blocks:i,cigar:o}},draw_read:function(t,e,i,n,r,s,u,c,h,d){var f=function(t){return Math.floor(Math.max(0,(t-r-.5)*i))};t.textAlign="center";var p,g,m=[r,s],v=0,_=0,y=Math.round(i/2),b=t.canvas.manager.char_width_px,w="+"===h?this.prefs.detail_block_color:this.prefs.reverse_strand_color,C="Pack"===e,k=C?9:3,S=n+1,T=new x(t,k,i,e),A=[],M=[],E=this._parse_cigar(c);c=E.cigar,A=E.blocks;for(var O=0;O<A.length;O++){var $=A[O];o([u+$[0],u+$[1]],m)&&(p=f(u+$[0]),g=f(u+$[1]),p===g&&(g+=1),t.fillStyle=w,t.fillRect(p,S,g-p,k))}for(var D=0,j=c.length;D<j;D++){var P=c[D],R="MIDNSHP=X"[P[0]],I=P[1],N=u+v;if(p=f(N),g=f(N+I),o([N,N+I],m))switch(p===g&&(g+=1),R){case"H":case"S":case"P":break;case"M":v+=I;break;case"=":case"X":var L="";"X"===R?L=d.slice(_,_+I):this.ref_seq&&(L=this.ref_seq.slice(Math.max(0,N-r),Math.min(N-r+I,s-r)));for(var z=Math.max(N,r),H=0;H<L.length;H++)if(L&&!this.prefs.show_differences||"X"===R){var q=Math.floor(Math.max(0,(z+H-r)*i));t.fillStyle=this.base_color_fn(L[H]),C&&i>b?t.fillText(L[H],q,n+9):i>.05&&t.fillRect(q-y,S,Math.max(1,Math.round(i)),k)}"X"===R&&(_+=I),v+=I;break;case"N":t.fillStyle="#ccc",t.fillRect(p,S+(k-1)/2,g-p,1),v+=I;break;case"D":T.draw_deletion(p,S,I),v+=I;break;case"I":var F=p-y;if(o([N,N+I],m)){var B=d.slice(_,_+I);if(this.prefs.show_insertions){var V=p-(g-p)/2;if(("Pack"===e||"Auto"===this.mode)&&void 0!==d&&i>b){switch(t.fillStyle="yellow",t.fillRect(V-y,n-9,g-p,9),M[M.length]={type:"triangle",data:[F,n+4,5]},t.fillStyle="#ccc",a([N,N+I],m)){case 1003:B=B.slice(r-N);break;case 1004:B=B.slice(0,N-s);break;case 1005:break;case 1002:B=B.slice(r-N,N-s)}for(var H=0,U=B.length;H<U;H++){var q=Math.floor(Math.max(0,(N+H-r)*i));t.fillText(B[H],q-(g-p)/2,n)}}else t.fillStyle="yellow",t.fillRect(V,n+("Dense"!==this.mode?2:5),g-p,"Dense"!==e?3:9)}else("Pack"===e||"Auto"===this.mode)&&void 0!==d&&i>b&&M.push({type:"text",data:[B.length,F,n+9]})}_+=I}else v=function(t,e,i){return-1!=="M=NXD".indexOf(e)&&(t+=i),t}(v,R,I),_=function(t,e,i){return-1!=="IX".indexOf(e)&&(t+=i),t}(_,R,I)}t.fillStyle="yellow";for(var W,G,X,O=0;O<M.length;O++)W=M[O],G=W.type,X=W.data,"text"===G?(t.save(),t.font="bold "+t.font,t.fillText(X[0],X[1],X[2]),t.restore()):"triangle"===G&&l(t,X[0],X[1],X[2])},draw_element:function(t,e,i,n,r,a,o,l,u){var c=(i[0],i[1]),h=i[2],d=i[3],f=Math.floor(Math.max(-.5*o,(c-r-.5)*o)),p=Math.ceil(Math.min(u,Math.max(0,(h-r-.5)*o))),g=("Dense"===e?0:0+n)*l,m="Pack"===e?9:3;this.prefs.label_color;if(i[5]instanceof Array){var v=!0;i[4][1]>=r&&i[4][0]<=a&&i[4][2]?this.draw_read(t,e,o,g,r,a,i[4][0],i[4][2],i[4][3],i[4][4]):v=!1,i[5][1]>=r&&i[5][0]<=a&&i[5][2]?this.draw_read(t,e,o,g,r,a,i[5][0],i[5][2],i[5][3],i[5][4]):v=!1;var _=Math.ceil(Math.min(u,Math.max(-.5*o,(i[4][1]-r-.5)*o))),y=Math.floor(Math.max(-.5*o,(i[5][0]-r-.5)*o));if(v&&y>_){t.fillStyle="#ccc";var b=g+1+(m-1)/2;s(t,_,b,y,b)}}else this.draw_read(t,e,o,g,r,a,c,i[4],i[5],i[6]);return"Pack"===e&&c>=r&&"."!==d&&(t.fillStyle=this.prefs.label_color,0===r&&f-t.measureText(d).width<0?(t.textAlign="left",t.fillText(d,p+2,g+9,this.max_label_length)):(t.textAlign="right",t.fillText(d,f-2,g+9,this.max_label_length))),[0,0]}});var v=function(t,e,i,n,r,a,o){g.call(this,t,e,i,n,r,a,o),this.longest_feature_length=this.calculate_longest_feature_length(),this.draw_background_connector=!1,this.draw_individual_connectors=!0};r.extend(v.prototype,p.prototype,g.prototype,{calculate_longest_feature_length:function(){for(var t=0,e=0,i=this.data.length;e<i;e++){var n=this.data[e],r=n[1],a=n[2];t=Math.max(t,a-r)}return t},get_top_padding:function(t){var e=this.view_end-this.view_start,i=t/e;return Math.min(128,Math.ceil(this.longest_feature_length/2*i))},draw_connector:function(t,e,i,n,r,a){var o=(i+n)/2,s=n-o;Math.PI;s>0&&(t.beginPath(),t.arc(o,a,n-o,Math.PI,0),t.stroke())}});var _=function(t,e){Array.isArray(t)?this.rgb=t:6==t.length?this.rgb=t.match(/.{2}/g).map(function(t){return parseInt(t,16)}):7==t.length?this.rgb=t.substring(1,7).match(/.{2}/g).map(function(t){return parseInt(t,16)}):this.rgb=t.split("").map(function(t){return parseInt(t+t,16)}),this.alpha="number"==typeof e?e:1};_.prototype={eval:function(){return this},toCSS:function(){return this.alpha<1?"rgba("+this.rgb.map(function(t){return Math.round(t)}).concat(this.alpha).join(", ")+")":"#"+this.rgb.map(function(t){return t=Math.round(t),t=(t>255?255:t<0?0:t).toString(16),1===t.length?"0"+t:t}).join("")},toHSL:function(){var t,e,i=this.rgb[0]/255,n=this.rgb[1]/255,r=this.rgb[2]/255,a=this.alpha,o=Math.max(i,n,r),s=Math.min(i,n,r),l=(o+s)/2,u=o-s;if(o===s)t=e=0;else{switch(e=l>.5?u/(2-o-s):u/(o+s),o){case i:t=(n-r)/u+(n<r?6:0);break;case n:t=(r-i)/u+2;break;case r:t=(i-n)/u+4}t/=6}return{h:360*t,s:e,l:l,a:a}},toARGB:function(){return"#"+[Math.round(255*this.alpha)].concat(this.rgb).map(function(t){return t=Math.round(t),t=(t>255?255:t<0?0:t).toString(16),1===t.length?"0"+t:t}).join("")},mix:function(t,e){var i=this,n=e,r=2*n-1,a=i.toHSL().a-t.toHSL().a,o=((r*a==-1?r:(r+a)/(1+r*a))+1)/2,s=1-o,l=[i.rgb[0]*o+t.rgb[0]*s,i.rgb[1]*o+t.rgb[1]*s,i.rgb[2]*o+t.rgb[2]*s],u=i.alpha*n+t.alpha*(1-n);return new _(l,u)}};var y=function(t,e,i,n){this.start_color=new _(t),this.end_color=new _(e),this.start_value=i,this.end_value=n,this.value_range=n-i};y.prototype.map_value=function(t){return t=Math.max(t,this.start_value),t=Math.min(t,this.end_value),t=(t-this.start_value)/this.value_range,this.start_color.mix(this.end_color,1-t).toCSS()};var b=function(t,e,i,n,r){this.positive_ramp=new y(e,i,0,r),this.negative_ramp=new y(e,t,0,-n),this.start_value=n,this.end_value=r};b.prototype.map_value=function(t){return t=Math.max(t,this.start_value),t=Math.min(t,this.end_value),t>=0?this.positive_ramp.map_value(t):this.negative_ramp.map_value(-t)};var w=function(t,e,i,n,r){h.call(this,t,e,i,n,r);var a,o;if(void 0===this.prefs.min_value){var s=1/0;for(a=0,o=this.data.length;a<o;a++)s=Math.min(s,this.data[a][6]);this.prefs.min_value=s}if(void 0===this.prefs.max_value){var l=-1/0;for(a=0,o=this.data.length;a<o;a++)l=Math.max(l,this.data[a][6]);this.prefs.max_value=l}};w.prototype.default_prefs={min_value:void 0,max_value:void 0,mode:"Heatmap",pos_color:"#FF8C00",neg_color:"#4169E1"},w.prototype.draw=function(t,e,i,n){var r,a,o,s,l,u,c=this.prefs.min_value,h=this.prefs.max_value,d=this.view_start,f=(this.mode,this.data),p=1/Math.sqrt(2),g=new b(this.prefs.neg_color,"#FFFFFF",this.prefs.pos_color,c,h),m=function(t){return(t-d)*n};t.save(),t.rotate(-45*Math.PI/180),t.scale(p,p);for(var v=0,_=f.length;v<_;v++)r=f[v],a=m(r[1]),o=m(r[2]),s=m(r[4]),l=m(r[5]),u=r[6],t.fillStyle=g.map_value(u),t.fillRect(a,s,o-a,l-s);t.restore()};var x=function(t,e,i,n){this.ctx=t,this.row_height=e,this.px_per_base=i,this.draw_details=("Pack"===n||"Auto"===n)&&i>=t.canvas.manager.char_width_px,this.delete_details_thickness=.2};r.extend(x.prototype,{draw_deletion:function(t,e,i){this.ctx.fillStyle="black";var n=(this.draw_details?this.delete_details_thickness:1)*this.row_height;e+=.5*(this.row_height-n),this.ctx.fillRect(t,e,i*this.px_per_base,n)}});var C=function(t,e,i,n,r,a){h.call(this,t,e,i,n,r),this.base_color_fn=a,this.divider_height=1};r.extend(C.prototype,h.prototype,{get_row_height:function(){var t=this.mode;return"Dense"===t?10:"Squish"===t?5:10},get_required_height:function(t){var e=this.prefs.summary_height;return t>1&&this.prefs.show_sample_data&&(e+=this.divider_height+t*this.get_row_height()),e},draw:function(t,e,i,n){t.save();var a,o,s,l,u,c,h,d,f,p,g,m=function(t,e){var i=t.length,n=e.length,r=0,a=1,o=null;return"-"===e?(o="deletion",a=t.length):0===t.indexOf(e)&&i>n?(o="deletion",a=i-n,r=n):0===e.indexOf(t)&&i<n&&(o="insertion",a=n-i,r=n),null!==o?{type:o,start:r,len:a}:{}},v=Math.max(1,Math.floor(n)),_=this.data.length?this.data[0][7].split(",").length:0,y="Squish"===this.mode?5:10,b=n<.1?y:"Squish"===this.mode?3:9,w=!0,C=new x(t,y,n,this.mode);1===_&&(y=b=n<t.canvas.manager.char_width_px?this.prefs.summary_height:y,C.row_height=y,w=!1),this.prefs.show_sample_data&&w&&(t.fillStyle="#F3F3F3",t.globalAlpha=1,t.fillRect(0,this.prefs.summary_height-this.divider_height,e,this.divider_height)),t.textAlign="center";for(var k=0;k<this.data.length;k++)if(a=this.data[k],o=a[1],s=a[3],l=[a[4].split(",")],u=a[7].split(","),c=a.slice(8),l=r.map(r.flatten(l),function(t){var e={type:"snp",value:t,start:0},i=m(s,t);return r.extend(e,i)}),!(o<this.view_start||o>this.view_end)){if(w)for(t.fillStyle="#999999",t.globalAlpha=1,g=0;g<l.length;g++)for(d=this.get_start_draw_pos(o+l[g].start,n),t.fillRect(d,0,v,this.prefs.summary_height),f=this.prefs.summary_height,g=0;g<l.length;g++){t.fillStyle="deletion"===l[g].type?"black":this.base_color_fn(l[g].value);var S=c/u.length,T=Math.ceil(this.prefs.summary_height*S);t.fillRect(d,f-T,v,T),f-=T}if(this.prefs.show_sample_data)for(f=w?this.prefs.summary_height+this.divider_height:0,g=0;g<u.length;g++,f+=y)if(p=u[g]?u[g].split(/\/|\|/):["0","0"],h=null,p[0]===p[1]?"."===p[0]||"0"!==p[0]&&(h=l[parseInt(p[0],10)-1],t.globalAlpha=1):(h="0"!==p[0]?p[0]:p[1],h=l[parseInt(h,10)-1],t.globalAlpha=.5),h)if(d=this.get_start_draw_pos(o+h.start,n),"snp"===h.type){var A=h.value;t.fillStyle=this.base_color_fn(A),C.draw_details?t.fillText(A,this.get_draw_pos(o,n),f+y):t.fillRect(d,f+1,v,b)}else"deletion"===h.type&&C.draw_deletion(d,f+1,h.len)}t.restore()}}),e.default={Scaler:u,LinePainter:d,LinkedFeaturePainter:g,ReadPainter:m,ArcLinkedFeaturePainter:v,DiagonalHeatmapPainter:w,VariantPainter:C}},function(t,e,i){"use strict";(function(t){Object.defineProperty(e,"__esModule",{value:!0});var n=i(3),r=function(t){return t&&t.__esModule?t:{default:t}}(n),a=i(1),o=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var i in t)Object.prototype.hasOwnProperty.call(t,i)&&(e[i]=t[i]);return e.default=t,e}(a),s=o.extend,l=function(t){this.manager=null,this.name=t.name,this.index=t.index,this.tool_id=t.tool_id,this.tool_exp_name=t.tool_exp_name};s(l.prototype,{to_dict:function(){return{name:this.name,index:this.index,tool_id:this.tool_id,tool_exp_name:this.tool_exp_name}}});var u=function(e,i,n){return t("<a/>").attr("href","javascript:void(0);").attr("title",e).addClass("icon-button").addClass(i).tooltip().click(n)},c=function(e){l.call(this,e),this.low="low"in e?e.low:-Number.MAX_VALUE,this.high="high"in e?e.high:Number.MAX_VALUE,this.min="min"in e?e.min:Number.MAX_VALUE,this.max="max"in e?e.max:-Number.MAX_VALUE,this.container=null,this.slider=null,this.slider_label=null;var i=this;i.parent_div=t("<div/>").addClass("filter-row slider-row");var n=t("<div/>").addClass("elt-label").appendTo(i.parent_div),r=(t("<span/>").addClass("slider-name").text(i.name+"  ").appendTo(n),t("<span/>").text(this.low+"-"+this.high)),a=t("<span/>").addClass("slider-value").appendTo(n).append("[").append(r).append("]");i.values_span=r;var o=t("<div/>").addClass("slider").appendTo(i.parent_div);i.control_element=t("<div/>").attr("id",i.name+"-filter-control").appendTo(o),i.control_element.slider({range:!0,min:this.min,max:this.max,step:this.get_slider_step(this.min,this.max),values:[this.low,this.high],slide:function(t,e){i.slide(t,e)},change:function(t,e){i.control_element.slider("option","slide").call(i.control_element,t,e)}}),i.slider=i.control_element,i.slider_label=r,function(e,i,n){e.click(function(){var e=i.text(),r=parseFloat(n.slider("option","max")),a=r<=1?4:r<=1e6?r.toString().length:6,o=!1,s=t(this).parents(".slider-row");s.addClass("input"),n.slider("option","values")&&(a=2*a+1,o=!0),i.text(""),t("<input type='text'/>").attr("size",a).attr("maxlength",a).attr("value",e).appendTo(i).focus().select().click(function(t){t.stopPropagation()}).blur(function(){t(this).remove(),i.text(e),s.removeClass("input")}).keyup(function(e){if(27===e.keyCode)t(this).trigger("blur");else if(13===e.keyCode){var i=n.slider("option","min"),r=n.slider("option","max"),a=function(t){return isNaN(t)||t>r||t<i},l=t(this).val();if(o){if(l=l.split("-"),l=[parseFloat(l[0]),parseFloat(l[1])],a(l[0])||a(l[1]))return alert("Parameter value must be in the range ["+i+"-"+r+"]"),t(this)}else if(l=parseFloat(l),a(l))return alert("Parameter value must be in the range ["+i+"-"+r+"]"),t(this);n.slider(o?"values":"value",l),s.removeClass("input")}})})}(a,r,i.control_element);var s=t("<div/>").addClass("display-controls").appendTo(i.parent_div);this.transparency_icon=u("Use filter for data transparency","layer-transparent",function(){i.manager.alpha_filter!==i?(i.manager.alpha_filter=i,i.manager.parent_div.find(".layer-transparent").removeClass("active").hide(),i.transparency_icon.addClass("active").show()):(i.manager.alpha_filter=null,i.transparency_icon.removeClass("active")),i.manager.track.request_draw({force:!0,clear_after:!0})}).appendTo(s).hide(),this.height_icon=u("Use filter for data 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i=e.values;this.values_span.text(i[0]+"-"+i[1]),this.low=i[0],this.high=i[1];var n=this;setTimeout(function(){i[0]===n.low&&i[1]===n.high&&n.manager.track.request_draw({force:!0,clear_after:!0})},25)},applies_to:function(t){return t.length>this.index},_keep_val:function(t){return isNaN(t)||t>=this.low&&t<=this.high},keep:function(t){if(!this.applies_to(t))return!0;var e=t[this.index];if(e instanceof Array){for(var i=!0,n=0;n<e.length;n++)if(!this._keep_val(e[n])){i=!1;break}return i}return this._keep_val(t[this.index])},update_attrs:function(t){var e=!1;if(!this.applies_to(t))return e;var i=t[this.index];i instanceof Array||(i=[i]);for(var n=0;n<i.length;n++){var r=i[n];r<this.min&&(this.min=Math.floor(r),e=!0),r>this.max&&(this.max=Math.ceil(r),e=!0)}return e},update_ui_elt:function(){this.min<this.max?this.parent_div.show():this.parent_div.hide();var t=this.slider.slider("option","min"),e=this.slider.slider("option","max");(this.min<t||this.max>e)&&(this.slider.slider("option","min",this.min),this.slider.slider("option","max",this.max),this.slider.slider("option","step",this.get_slider_step(this.min,this.max)),this.slider.slider("option","values",[this.min,this.max]))}});var h=function(e,i){if(this.track=e,this.alpha_filter=null,this.height_filter=null,this.filters=[],this.parent_div=t("<div/>").addClass("filters").hide(),this.parent_div.bind("drag",function(t){t.stopPropagation()}).click(function(t){t.stopPropagation()}).bind("dblclick",function(t){t.stopPropagation()}).bind("keydown",function(t){t.stopPropagation()}),i&&"filters"in i){for(var n,r=("alpha_filter"in i?i.alpha_filter:null),a=("height_filter"in i?i.height_filter:null),o=i.filters,s=0;s<o.length;s++)"number"===o[s].type?(n=new c(o[s]),this.add_filter(n),n.name===r&&(this.alpha_filter=n,n.transparency_icon.addClass("active").show()),n.name===a&&(this.height_filter=n,n.height_icon.addClass("active").show())):console.log("ERROR: unsupported filter: ",name,type);"visible"in i&&i.visible&&this.parent_div.show()}if(0!==this.filters.length){var l=t("<div/>").addClass("param-row").appendTo(this.parent_div),u=this;t("<input type='submit'/>").attr("value","Run on complete dataset").appendTo(l).click(function(){u.run_on_dataset()})}};s(h.prototype,{show:function(){this.parent_div.show()},hide:function(){this.parent_div.hide()},toggle:function(){this.parent_div.toggle()},visible:function(){return this.parent_div.is(":visible")},to_dict:function(){for(var t,e={},i=[],n=0;n<this.filters.length;n++)t=this.filters[n],i.push(t.to_dict());return e.filters=i,e.alpha_filter=this.alpha_filter?this.alpha_filter.name:null,e.height_filter=this.height_filter?this.height_filter.name:null,e.visible=this.parent_div.is(":visible"),e},copy:function(t){for(var e=new h(t),i=0;i<this.filters.length;i++)e.add_filter(this.filters[i].copy());return e},add_filter:function(t){t.manager=this,this.parent_div.append(t.parent_div),this.filters.push(t)},remove_all:function(){this.filters=[],this.parent_div.children().remove()},init_filters:function(){for(var t=0;t<this.filters.length;t++){this.filters[t].update_ui_elt()}},clear_filters:function(){for(var t=0;t<this.filters.length;t++){var e=this.filters[t];e.slider.slider("option","values",[e.min,e.max])}this.alpha_filter=null,this.height_filter=null,this.parent_div.find(".icon-button").hide()},run_on_dataset:function(){for(var e,i,n=(function(t,e,i){return e in t||(t[e]=i),t[e]}),a={},o=0;o<this.filters.length;o++)e=this.filters[o],e.tool_id&&(e.min!==e.low&&(i=n(a,e.tool_id,[]),i[i.length]=e.tool_exp_name+" >= "+e.low),e.max!==e.high&&(i=n(a,e.tool_id,[]),i[i.length]=e.tool_exp_name+" <= "+e.high));var s=[];for(var l in a)s[s.length]=[l,a[l]];!function e(i,n){var a=n[0],o=a[0],s=a[1],l="("+s.join(") and (")+")",u={cond:l,input:i,target_dataset_id:i,tool_id:o};n=n.slice(1),t.getJSON(run_tool_url,u,function(t){t.error?Galaxy.modal.show({title:(0,r.default)("Filter Dataset"),body:"Error running tool "+o,buttons:{Close:Galaxy.modal.hide()}}):0===n.length?Galaxy.modal.show({title:(0,r.default)("Filtering Dataset"),body:"Filter(s) are running on the complete dataset. Outputs are in dataset's history.",buttons:{Close:Galaxy.modal.hide()}}):e(t.dataset_id,n)})}(this.track.dataset_id,s)}}),e.default={FiltersManager:h,NumberFilter:c}}).call(e,i(0))},function(t,e,i){"use strict";(function(t,n,r,a){function o(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var s=i(5),l=o(s),u=i(6),c=(o(u),i(69)),h=o(c),d=i(166),f=o(d),p=i(167),g=o(p),m=i(168),v=o(m),_=t.View.extend({initialize:function(t,e){this.app=t,this.inputs=e.inputs,this.parameters=new v.default,this.setElement(n("<div/>")),this.render()},render:function(){var t=this;this.$el.empty(),r.each(this.inputs,function(e){t.add(e)})},add:function(t){var e=a.extend(!0,{},t);switch(e.id=t.id=l.default.uid(),this.app.input_list[e.id]=e,e.type){case"conditional":this._addConditional(e);break;case"repeat":this._addRepeat(e);break;case"section":this._addSection(e);break;default:this._addRow(e)}},_addConditional:function(t){var e=this;t.test_param.id=t.id,this.app.model.get("sustain_conditionals")&&(t.test_param.disabled=!0);var i=this._addRow(t.test_param);i.model&&i.model.set("onchange",function(i){var n=e.app.data.matchCase(t,i);for(var r in t.cases){var a=t.cases[r],o=e.$("#"+t.id+"-section-"+r),s=!1;for(var l in a.inputs)if(!a.inputs[l].hidden){s=!0;break}r==n&&s?o.fadeIn("fast"):o.hide()}e.app.trigger("change")});for(var n in t.cases){var r=new _(this.app,{inputs:t.cases[n].inputs});this._append(r.$el.addClass("ui-form-section"),t.id+"-section-"+n)}i.trigger("change")},_addRepeat:function(t){function e(e){var r=t.id+"-section-"+n++,o=new _(i.app,{inputs:e});a.add({id:r,$el:o.$el,ondel:function(){a.del(r),i.app.trigger("change")}})}for(var i=this,n=0,a=new f.default.View({title:t.title||"Repeat",min:t.min,max:t.max,onnew:function(){e(t.inputs),i.app.trigger("change")}}),o=r.size(t.cache),s=0;s<Math.max(Math.max(o,t.min||0),t.default||0);s++)e(s<o?t.cache[s]:t.inputs);this.app.model.get("sustain_repeats")&&a.hideOptions();var l=new g.default(this.app,{label:t.title||t.name,help:t.help,field:a});this._append(l.$el,t.id)},_addSection:function(t){var e=new h.default.View({title:t.title||t.name,cls:"ui-portlet-section",collapsible:!0,collapsible_button:!0,collapsed:!t.expanded});e.append(new _(this.app,{inputs:t.inputs}).$el),e.append(n("<div/>").addClass("ui-form-info").html(t.help)),this.app.on("expand",function(t){e.$("#"+t).length>0&&e.expand()}),this._append(e.$el,t.id)},_addRow:function(t){var e=this,i=t.id;t.onchange=t.onchange||function(){e.app.trigger("change",i)};var n=this.parameters.create(t);this.app.field_list[i]=n;var r=new g.default(this.app,{name:t.name,label:t.hide_label?"":t.label||t.name,value:t.value,text_value:t.text_value,collapsible_value:t.collapsible_value,collapsible_preview:t.collapsible_preview,help:t.help,argument:t.argument,disabled:t.disabled,color:t.color,style:t.style,backdrop:t.backdrop,hidden:t.hidden,fixed:t.fixed,field:n});return this.app.element_list[i]=r,this._append(r.$el,t.id),n},_append:function(t,e){this.$el.append(t.addClass("section-row").attr("id",e))}});e.default={View:_}}).call(e,i(2),i(0),i(1),i(0))},function(t,e,i){"use strict";(function(t,n,r){function a(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0}),e.View=void 0;var o=i(3),s=a(o),l=i(5),u=a(l),c=i(69),h=a(c),d=i(6),f=a(d),p=e.View=t.View.extend({initialize:function(t){this.list={},this.options=u.default.merge(t,{title:(0,s.default)("Repeat"),empty_text:"Not available.",max:null,min:null}),this.button_new=new f.default.ButtonIcon({icon:"fa-plus",title:"Insert "+this.options.title,tooltip:"Add new "+this.options.title+" block",cls:"ui-button-icon ui-clear-float form-repeat-add",onclick:function(){t.onnew&&t.onnew()}}),this.setElement(n("<div/>").append(this.$list=n("<div/>")).append(n("<div/>").append(this.button_new.$el)))},size:function(){return r.size(this.list)},add:function(t){if(!t.id||this.list[t.id])return void Galaxy.emit.debug("form-repeat::add()","Duplicate or invalid repeat block id.");var e=new f.default.ButtonIcon({icon:"fa-trash-o",tooltip:(0,s.default)("Delete this repeat block"),cls:"ui-button-icon-plain form-repeat-delete",onclick:function(){t.ondel&&t.ondel()}}),i=new h.default.View({id:t.id,title:(0,s.default)("placeholder"),cls:t.cls||"ui-portlet-repeat",operations:{button_delete:e}});i.append(t.$el),i.$el.addClass("section-row").hide(),this.list[t.id]=i,this.$list.append(i.$el.fadeIn("fast")),this.options.max>0&&this.size()>=this.options.max&&this.button_new.disable(),this._refresh()},del:function(t){if(!this.list[t])return void Galaxy.emit.debug("form-repeat::del()","Invalid repeat block id.");this.$list.find("#"+t).remove(),delete this.list[t],this.button_new.enable(),this._refresh()},delAll:function(){for(var t in this.list)this.del(t)},hideOptions:function(){this.button_new.$el.hide(),r.each(this.list,function(t){t.hideOperation("button_delete")}),r.isEmpty(this.list)&&this.$el.append(n("<div/>").addClass("ui-form-info").html(this.options.empty_text))},_refresh:function(){var t=0;for(var e in this.list){var i=this.list[e];i.title(++t+": "+this.options.title),i[this.size()>this.options.min?"showOperation":"hideOperation"]("button_delete")}}});e.default={View:p}}).call(e,i(2),i(0),i(1))},function(t,e,i){"use strict";(function(t,i,n){Object.defineProperty(e,"__esModule",{value:!0}),e.default=t.View.extend({initialize:function(e,i){this.app=e,this.app_options=e.model?e.model.attributes:{},this.field=i&&i.field||new t.View,this.model=i&&i.model||new t.Model({text_enable:this.app_options.text_enable||"Enable",text_disable:this.app_options.text_disable||"Disable",cls_enable:this.app_options.cls_enable||"fa fa-caret-square-o-down",cls_disable:this.app_options.cls_disable||"fa fa-caret-square-o-up",always_refresh:this.app_options.always_refresh}).set(i),this.setElement(this._template()),this.$field=this.$(".ui-form-field"),this.$info=this.$(".ui-form-info"),this.$preview=this.$(".ui-form-preview"),this.$collapsible=this.$(".ui-form-collapsible"),this.$collapsible_text=this.$(".ui-form-collapsible-text"),this.$collapsible_icon=this.$(".ui-form-collapsible-icon"),this.$title=this.$(".ui-form-title"),this.$title_text=this.$(".ui-form-title-text"),this.$error_text=this.$(".ui-form-error-text"),this.$error=this.$(".ui-form-error"),this.$backdrop=this.$(".ui-form-backdrop"),this.$field.prepend(this.field.$el);var n=this.model.get("collapsible_value");this.field.collapsed=void 0!==n&&JSON.stringify(this.model.get("value"))==JSON.stringify(n),this.listenTo(this.model,"change",this.render,this),this.render();var r=this;this.$collapsible.on("click",function(){r.field.collapsed=!r.field.collapsed,e.trigger&&e.trigger("change"),r.render()}),this.field.model&&!this.model.get("always_refresh")&&this.listenTo(this.field.model,"change:value",function(){r.reset()})},backdrop:function(){this.model.set("backdrop",!0)},error:function(t){this.model.set("error_text",t)},reset:function(){!this.model.get("fixed")&&this.model.set("error_text",null)},render:function(){i(".tooltip").hide();var t=this.model.get("help",""),e=this.model.get("argument");e&&-1==t.indexOf("("+e+")")&&(t+=" ("+e+")"),this.$info.html(t),this.$el[this.model.get("hidden")?"hide":"show"](),this.$preview[this.field.collapsed&&this.model.get("collapsible_preview")||this.model.get("disabled")?"show":"hide"]().html(n.escape(this.model.get("text_value")));var r=this.model.get("error_text");if(this.$error[r?"show":"hide"](),this.$el[r?"addClass":"removeClass"]("ui-error"),this.$error_text.html(r),this.$backdrop[this.model.get("backdrop")?"show":"hide"](),this.field.collapsed||this.model.get("disabled")?this.$field.hide():this.$field.show(),this.field.model&&this.field.model.set({color:this.model.get("color"),style:this.model.get("style")}),this.model.get("disabled")||void 0===this.model.get("collapsible_value"))this.$title_text.show().text(this.model.get("label")),this.$collapsible.hide();else{var a=this.field.collapsed?"enable":"disable";this.$title_text.hide(),this.$collapsible.show(),this.$collapsible_text.text(this.model.get("label")),this.$collapsible_icon.removeClass().addClass("icon").addClass(this.model.get("cls_"+a)).attr("data-original-title",this.model.get("text_"+a)).tooltip({placement:"bottom"})}},_template:function(){return i("<div/>").addClass("ui-form-element").append(i("<div/>").addClass("ui-form-error ui-error").append(i("<span/>").addClass("fa fa-arrow-down")).append(i("<span/>").addClass("ui-form-error-text"))).append(i("<div/>").addClass("ui-form-title").append(i("<div/>").addClass("ui-form-collapsible").append(i("<i/>").addClass("ui-form-collapsible-icon")).append(i("<span/>").addClass("ui-form-collapsible-text"))).append(i("<span/>").addClass("ui-form-title-text"))).append(i("<div/>").addClass("ui-form-field").append(i("<span/>").addClass("ui-form-info")).append(i("<div/>").addClass("ui-form-backdrop"))).append(i("<div/>").addClass("ui-form-preview"))}})}).call(e,i(2),i(0),i(1))},function(t,e,i){"use strict";(function(t,n,r){function a(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var o=i(5),s=a(o),l=i(6),u=a(l),c=i(169),h=a(c),d=i(170),f=a(d),p=i(171),g=a(p),m=i(172),v=a(m),_=i(174),y=a(_);e.default=t.Model.extend({types:{text:"_fieldText",password:"_fieldText",select:"_fieldSelect",data_column:"_fieldSelect",genomebuild:"_fieldSelect",data:"_fieldData",data_collection:"_fieldData",integer:"_fieldSlider",float:"_fieldSlider",boolean:"_fieldBoolean",drill_down:"_fieldDrilldown",color:"_fieldColor",hidden:"_fieldHidden",hidden_data:"_fieldHidden",baseurl:"_fieldHidden",library_data:"_fieldLibrary",ftpfile:"_fieldFtp",upload:"_fieldUpload",genomespacefile:"_fieldGenomeSpace"},create:function(t){var e=this.types[t.type],i="function"==typeof this[e]?this[e].call(this,t):null;return i||(i=t.options?this._fieldSelect(t):this._fieldText(t),Galaxy.emit.debug("form-parameters::_addRow()","Auto matched field type ("+t.type+").")),void 0===t.value&&(t.value=null),i.value(t.value),i},_fieldData:function(t){return new h.default.View({id:"field-"+t.id,extensions:t.extensions,optional:t.optional,multiple:t.multiple,type:t.type,flavor:t.flavor,data:t.options,onchange:t.onchange})},_fieldSelect:function(t){if(t.is_workflow)return this._fieldText(t);"data_column"==t.type&&(t.error_text="Missing columns in referenced dataset.");var e=t.data;e||(e=[],n.each(t.options,function(t){e.push({label:t[0],value:t[1]})}));var i=u.default.Select;switch(t.display){case"checkboxes":i=u.default.Checkbox;break;case"radio":i=u.default.Radio;break;case"radiobutton":i=u.default.RadioButton}return new i.View({id:"field-"+t.id,data:e,error_text:t.error_text||"No options available",readonly:t.readonly,multiple:t.multiple,optional:t.optional,onchange:t.onchange,individual:t.individual,searchable:"workflow"!==t.flavor})},_fieldDrilldown:function(t){return t.is_workflow?this._fieldText(t):new u.default.Drilldown.View({id:"field-"+t.id,data:t.options,display:t.display,optional:t.optional,onchange:t.onchange})},_fieldText:function(t){if(t.options&&t.data)if(t.area=t.multiple,s.default.isEmpty(t.value))t.value=null;else if(r.isArray(t.value)){var e="";for(var i in t.value){if(e+=String(t.value[i]),!t.multiple)break;e+="\n"}t.value=e}return new u.default.Input({id:"field-"+t.id,type:t.type,area:t.area,readonly:t.readonly,placeholder:t.placeholder,datalist:t.datalist,onchange:t.onchange})},_fieldSlider:function(t){return new u.default.Slider.View({id:"field-"+t.id,precise:"float"==t.type,is_workflow:t.is_workflow,min:t.min,max:t.max,onchange:t.onchange})},_fieldHidden:function(t){return new u.default.Hidden({id:"field-"+t.id,info:t.info})},_fieldBoolean:function(t){return new u.default.RadioButton.View({id:"field-"+t.id,data:[{label:"Yes",value:"true"},{label:"No",value:"false"}],onchange:t.onchange})},_fieldColor:function(t){return new y.default({id:"field-"+t.id,onchange:t.onchange})},_fieldLibrary:function(t){return new f.default.View({id:"field-"+t.id,optional:t.optional,multiple:t.multiple,onchange:t.onchange})},_fieldFtp:function(t){return new g.default.View({id:"field-"+t.id,optional:t.optional,multiple:t.multiple,onchange:t.onchange})},_fieldGenomeSpace:function(t){var e=this;return new v.default.View({id:"field-"+t.id,onchange:function(){e.app.trigger("change")}})},_fieldUpload:function(t){return new u.default.Upload({id:"field-"+t.id,onchange:t.onchange})}})}).call(e,i(2),i(1),i(0))},function(t,e,i){"use strict";(function(t,n,r){function a(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var o=i(3),s=a(o),l=i(5),u=a(l),c=i(6),h=a(c),d=i(114),f=a(d),p={DISABLED:"disabled",ENABLED:"enabled",LINKED:"linked"},g={data:[{src:"hda",icon:"fa-file-o",tooltip:(0,s.default)("Single 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Separate jobs will be triggered for each dataset selection."));this.$batch={linked:r.clone(),enabled:r.clone().append(n("<div/>").append(n("<div/>").addClass("ui-form-title").html("Batch options:")).append(this.button_product.$el)).append(n("<div/>").css("clear","both"))},this.$el.on("dragenter",function(t){this.lastenter=t.target,i.$el.addClass("ui-dragover")}).on("dragover",function(t){t.preventDefault()}).on("dragleave",function(t){this.lastenter===t.target&&i.$el.removeClass("ui-dragover")}).on("drop",function(t){i._handleDrop(t)}),this.history={},this.listenTo(this.model,"change:data",this._changeData,this),this.listenTo(this.model,"change:wait",this._changeWait,this),this.listenTo(this.model,"change:current",this._changeCurrent,this),this.listenTo(this.model,"change:value",this._changeValue,this),this.listenTo(this.model,"change:type change:optional change:multiple 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t=this;r.each(this.fields,function(e,i){t.model.get("current")==i?(e.$el.show(),r.each(t.$batch,function(e,n){e[t.config[i].batch==n?"show":"hide"]()}),t.button_type.value(i)):e.$el.hide()})},_changeType:function(){var t=this,e=(this.model.get("flavor")?this.model.get("flavor")+"_":"")+String(this.model.get("type"))+(this.model.get("multiple")?"_multiple":"");g[e]?this.config=g[e]:(this.config=g.data,Galaxy.emit.debug("ui-select-content::_changeType()","Invalid configuration/type id '"+e+"'."));var i=t.model.get("data"),n=u.default.textify(this.model.get("extensions")),a=this.model.get("src_labels");this.fields=[],this.button_data=[],r.each(this.config,function(e,r){t.button_data.push({value:r,icon:e.icon,tooltip:e.tooltip}),t.fields.push(new f.default.View({optional:t.model.get("optional"),multiple:e.multiple,searchable:!e.multiple||i&&i[e.src]&&i[e.src].length>t.model.get("pagelimit"),individual:!0,error_text:"No "+(n?n+" ":"")+(a[e.src]||"content")+" 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r=i(6),a=n(r),o=i(120),s=n(o),l=t.Collection.extend({url:Galaxy.root+"api/libraries?deleted=false"}),u=t.Collection.extend({initialize:function(){var e=this;this.config=new t.Model({library_id:null}),this.config.on("change",function(){e.fetch({reset:!0})})},url:function(){return Galaxy.root+"api/libraries/"+this.config.get("library_id")+"/contents"}}),c=t.View.extend({initialize:function(t){var e=this;this.libraries=new l,this.datasets=new u,this.options=t,this.library_select=new a.default.Select.View({onchange:function(t){e.datasets.config.set("library_id",t)}}),this.dataset_list=new s.default.View({name:"dataset",optional:t.optional,multiple:t.multiple,onchange:function(){e.trigger("change")}}),this.libraries.on("reset",function(){var t=[];e.libraries.each(function(e){t.push({value:e.id,label:e.get("name")})}),e.library_select.update(t)}),this.datasets.on("reset",function(){var t=[];null!==e.library_select.text()&&e.datasets.each(function(e){"file"===e.get("type")&&t.push({value:e.id,label:e.get("name")})}),e.dataset_list.update(t)}),this.on("change",function(){t.onchange&&t.onchange(e.value())}),this.setElement(this._template()),this.$(".library-select").append(this.library_select.$el),this.$el.append(this.dataset_list.$el),this.libraries.fetch({reset:!0,success:function(){e.library_select.trigger("change"),void 0!==e.options.value&&e.value(e.options.value)}})},value:function(t){return this.dataset_list.value(t)},_template:function(){return'<div class="ui-select-library"><div class="library ui-margin-bottom"><span class="library-title">Select Library</span><span class="library-select"/></div></div>'}});e.default={View:c}}).call(e,i(2))},function(t,e,i){"use strict";(function(t){function n(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var r=i(5),a=n(r),o=i(120),s=n(o),l=t.View.extend({initialize:function(t){var 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this.filename_textbox.value()+"^"+this.token_textbox.value()},_setValue:function(t){t&&(values=t.split("^"),this.filename_textbox.value(values[0]),this.token_textbox.value(values[1]))}});e.default={View:h}}).call(e,i(2))},function(t,e,i){"use strict";Object.defineProperty(e,"__esModule",{value:!0}),e.default={openFileBrowser:function(t){var e=window.Galaxy.config.genomespace_ui_url,i=e+"upload/loadUrlToGenomespace.html?getLocation=true",n=window.open(i,"GenomeSpace File Browser","height=360px,width=600px");successCalBack=t.successCallback,window.addEventListener("message",function(t){successCalBack(t.data)},!1),n.focus(),null!=t.errorCallback&&(n.setCallbackOnGSUploadError=config.errorCallback)}}},function(t,e,i){"use strict";(function(t,n){Object.defineProperty(e,"__esModule",{value:!0});var r=i(5),a=function(t){return t&&t.__esModule?t:{default:t}}(r);e.default=t.View.extend({colors:{standard:["c00000","ff0000","ffc000","ffff00","92d050","00b050","00b0f0","0070c0","002060","7030a0"],base:["ffffff","000000","eeece1","1f497d","4f81bd","c0504d","9bbb59","8064a2","4bacc6","f79646"],theme:[["f2f2f2","7f7f7f","ddd9c3","c6d9f0","dbe5f1","f2dcdb","ebf1dd","e5e0ec","dbeef3","fdeada"],["d8d8d8","595959","c4bd97","8db3e2","b8cce4","e5b9b7","d7e3bc","ccc1d9","b7dde8","fbd5b5"],["bfbfbf","3f3f3f","938953","548dd4","95b3d7","d99694","c3d69b","b2a2c7","92cddc","fac08f"],["a5a5a5","262626","494429","17365d","366092","953734","76923c","5f497a","31859b","e36c09"],["7f7f7e","0c0c0c","1d1b10","0f243e","244061","632423","4f6128","3f3151","205867","974806"]]},initialize:function(t){this.options=a.default.merge(t,{}),this.setElement(this._template()),this.$panel=this.$(".ui-color-picker-panel"),this.$view=this.$(".ui-color-picker-view"),this.$value=this.$(".ui-color-picker-value"),this.$header=this.$(".ui-color-picker-header"),this._build(),this.visible=!1,this.value(this.options.value),this.$boxes=this.$(".ui-color-picker-box");var 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e;o.createStyleSheet?o.createStyleSheet().cssText=t:(e=o.createElement("style"),e.type="text/css",o.getElementsByTagName("head")[0].appendChild(e),e["string"==typeof o.body.style.WebkitAppearance?"innerText":"innerHTML"]=t)},t.fn.simpledraw=function(e,i,n,r){var a,s;if(n&&(a=this.data("_jqs_vcanvas")))return a;if(!1===t.fn.sparkline.canvas)return!1;if(void 0===t.fn.sparkline.canvas){var l=o.createElement("canvas");if(l.getContext&&l.getContext("2d"))t.fn.sparkline.canvas=function(t,e,i,n){return new $(t,e,i,n)};else{if(!o.namespaces||o.namespaces.v)return t.fn.sparkline.canvas=!1,!1;o.namespaces.add("v","urn:schemas-microsoft-com:vml","#default#VML"),t.fn.sparkline.canvas=function(t,e,i,n){return new D(t,e,i)}}}return void 0===e&&(e=t(this).innerWidth()),void 0===i&&(i=t(this).innerHeight()),a=t.fn.sparkline.canvas(e,i,this,r),s=t(this).data("_jqs_mhandler"),s&&s.registerCanvas(a),a},t.fn.cleardraw=function(){var t=this.data("_jqs_vcanvas");t&&t.reset()},t.RangeMapClass=m=i({init:function(t){var e,i,n=[];for(e in t)t.hasOwnProperty(e)&&"string"==typeof e&&e.indexOf(":")>-1&&(i=e.split(":"),i[0]=0===i[0].length?-1/0:parseFloat(i[0]),i[1]=0===i[1].length?1/0:parseFloat(i[1]),i[2]=t[e],n.push(i));this.map=t,this.rangelist=n||!1},get:function(t){var e,i,n,r=this.rangelist;if(void 0!==(n=this.map[t]))return n;if(r)for(e=r.length;e--;)if(i=r[e],i[0]<=t&&i[1]>=t)return i[2]}}),t.range_map=function(t){return new m(t)},v=i({init:function(e,i){var n=t(e);this.$el=n,this.options=i,this.currentPageX=0,this.currentPageY=0,this.el=e,this.splist=[],this.tooltip=null,this.over=!1,this.displayTooltips=!i.get("disableTooltips"),this.highlightEnabled=!i.get("disableHighlight")},registerSparkline:function(t){this.splist.push(t),this.over&&this.updateDisplay()},registerCanvas:function(e){var i=t(e.canvas);this.canvas=e,this.$canvas=i,i.mouseenter(t.proxy(this.mouseenter,this)),i.mouseleave(t.proxy(this.mouseleave,this)),i.click(t.proxy(this.mouseclick,this))},reset:function(t){this.splist=[],this.tooltip&&t&&(this.tooltip.remove(),this.tooltip=void 0)},mouseclick:function(e){var i=t.Event("sparklineClick");i.originalEvent=e,i.sparklines=this.splist,this.$el.trigger(i)},mouseenter:function(e){t(o.body).unbind("mousemove.jqs"),t(o.body).bind("mousemove.jqs",t.proxy(this.mousemove,this)),this.over=!0,this.currentPageX=e.pageX,this.currentPageY=e.pageY,this.currentEl=e.target,!this.tooltip&&this.displayTooltips&&(this.tooltip=new _(this.options),this.tooltip.updatePosition(e.pageX,e.pageY)),this.updateDisplay()},mouseleave:function(){t(o.body).unbind("mousemove.jqs");var e,i,n=this.splist,r=n.length,a=!1;for(this.over=!1,this.currentEl=null,this.tooltip&&(this.tooltip.remove(),this.tooltip=null),i=0;i<r;i++)e=n[i],e.clearRegionHighlight()&&(a=!0);a&&this.canvas.render()},mousemove:function(t){this.currentPageX=t.pageX,this.currentPageY=t.pageY,this.currentEl=t.target,this.tooltip&&this.tooltip.updatePosition(t.pageX,t.pageY),this.updateDisplay()},updateDisplay:function(){var e,i,n,r,a,o=this.splist,s=o.length,l=!1,u=this.$canvas.offset(),c=this.currentPageX-u.left,h=this.currentPageY-u.top;if(this.over){for(n=0;n<s;n++)i=o[n],(r=i.setRegionHighlight(this.currentEl,c,h))&&(l=!0);if(l){if(a=t.Event("sparklineRegionChange"),a.sparklines=this.splist,this.$el.trigger(a),this.tooltip){for(e="",n=0;n<s;n++)i=o[n],e+=i.getCurrentRegionTooltip();this.tooltip.setContent(e)}this.disableHighlight||this.canvas.render()}null===r&&this.mouseleave()}}}),_=i({sizeStyle:"position: static !important;display: block !important;visibility: hidden !important;float: left 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scroll.jqs",t.proxy(this.updateWindowDims,this)),this.updateWindowDims()},updateWindowDims:function(){this.scrollTop=t(window).scrollTop(),this.scrollLeft=t(window).scrollLeft(),this.scrollRight=this.scrollLeft+t(window).width(),this.updatePosition()},getSize:function(t){this.sizetip.html(t).appendTo(this.container),this.width=this.sizetip.width()+1,this.height=this.sizetip.height(),this.sizetip.remove()},setContent:function(t){if(!t)return this.tooltip.css("visibility","hidden"),void(this.hidden=!0);this.getSize(t),this.tooltip.html(t).css({width:this.width,height:this.height,visibility:"visible"}),this.hidden&&(this.hidden=!1,this.updatePosition())},updatePosition:function(t,e){if(void 0===t){if(void 0===this.mousex)return;t=this.mousex-this.offsetLeft,e=this.mousey-this.offsetTop}else this.mousex=t-=this.offsetLeft,this.mousey=e-=this.offsetTop;this.height&&this.width&&!this.hidden&&(e-=this.height+this.tooltipOffsetY,t+=this.tooltipOffsetX,e<this.scrollTop&&(e=this.scrollTop),t<this.scrollLeft?t=this.scrollLeft:t+this.width>this.scrollRight&&(t=this.scrollRight-this.width),this.tooltip.css({left:t,top:e}))},remove:function(){this.tooltip.remove(),this.sizetip.remove(),this.sizetip=this.tooltip=void 0,t(window).unbind("resize.jqs scroll.jqs")}}),M=function(){f(A)},t(M),j=[],t.fn.sparkline=function(e,i){return this.each(function(){var n,r,a=new t.fn.sparkline.options(this,i),s=t(this);if(n=function(){var i,n,r,l,u,c,h;if("html"===e||void 0===e?(h=this.getAttribute(a.get("tagValuesAttribute")),void 0!==h&&null!==h||(h=s.html()),i=h.replace(/(^\s*<!--)|(-->\s*$)|\s+/g,"").split(",")):i=e,n="auto"===a.get("width")?i.length*a.get("defaultPixelsPerValue"):a.get("width"),"auto"===a.get("height")?a.get("composite")&&t.data(this,"_jqs_vcanvas")||(l=o.createElement("span"),l.innerHTML="a",s.html(l),r=t(l).innerHeight()||t(l).height(),t(l).remove(),l=null):r=a.get("height"),a.get("disableInteraction")?u=!1:(u=t.data(this,"_jqs_mhandler"),u?a.get("composite")||u.reset():(u=new v(this,a),t.data(this,"_jqs_mhandler",u))),a.get("composite")&&!t.data(this,"_jqs_vcanvas"))return void(t.data(this,"_jqs_errnotify")||(alert("Attempted to attach a composite sparkline to an element with no existing sparkline"),t.data(this,"_jqs_errnotify",!0)));c=new(t.fn.sparkline[a.get("type")])(this,i,a,n,r),c.render(),u&&u.registerSparkline(c)},t(this).html()&&!a.get("disableHiddenCheck")&&t(this).is(":hidden")||!t(this).parents("body").length){if(!a.get("composite")&&t.data(this,"_jqs_pending"))for(r=j.length;r;r--)j[r-1][0]==this&&j.splice(r-1,1);j.push([this,n]),t.data(this,"_jqs_pending",!0)}else n.call(this)})},t.fn.sparkline.defaults=e(),t.sparkline_display_visible=function(){var e,i,n,r=[];for(i=0,n=j.length;i<n;i++)e=j[i][0],t(e).is(":visible")&&!t(e).parents().is(":hidden")?(j[i][1].call(e),t.data(j[i][0],"_jqs_pending",!1),r.push(i)):t(e).closest("html").length||t.data(e,"_jqs_pending")||(t.data(j[i][0],"_jqs_pending",!1),r.push(i));for(i=r.length;i;i--)j.splice(r[i-1],1)},t.fn.sparkline.options=i({init:function(e,i){var n,r,a,o;this.userOptions=i=i||{},this.tag=e,this.tagValCache={},r=t.fn.sparkline.defaults,a=r.common,this.tagOptionsPrefix=i.enableTagOptions&&(i.tagOptionsPrefix||a.tagOptionsPrefix),o=this.getTagSetting("type"),n=o===P?r[i.type||a.type]:r[o],this.mergedOptions=t.extend({},a,n,i)},getTagSetting:function(t){var e,i,n,r,a=this.tagOptionsPrefix;if(!1===a||void 0===a)return P;if(this.tagValCache.hasOwnProperty(t))e=this.tagValCache.key;else{if(void 0===(e=this.tag.getAttribute(a+t))||null===e)e=P;else if("["===e.substr(0,1))for(e=e.substr(1,e.length-2).split(","),i=e.length;i--;)e[i]=l(e[i].replace(/(^\s*)|(\s*$)/g,""));else if("{"===e.substr(0,1))for(n=e.substr(1,e.length-2).split(","),e={},i=n.length;i--;)r=n[i].split(":",2),e[r[0].replace(/(^\s*)|(\s*$)/g,"")]=l(r[1].replace(/(^\s*)|(\s*$)/g,""));else e=l(e);this.tagValCache.key=e}return e},get:function(t,e){var i,n=this.getTagSetting(t);return n!==P?n:void 0===(i=this.mergedOptions[t])?e:i}}),t.fn.sparkline._base=i({disabled:!1,init:function(e,i,n,r,a){this.el=e,this.$el=t(e),this.values=i,this.options=n,this.width=r,this.height=a,this.currentRegion=void 0},initTarget:function(){var t=!this.options.get("disableInteraction");(this.target=this.$el.simpledraw(this.width,this.height,this.options.get("composite"),t))?(this.canvasWidth=this.target.pixelWidth,this.canvasHeight=this.target.pixelHeight):this.disabled=!0},render:function(){return!this.disabled||(this.el.innerHTML="",!1)},getRegion:function(t,e){},setRegionHighlight:function(t,e,i){var n,r=this.currentRegion,a=!this.options.get("disableHighlight");return e>this.canvasWidth||i>this.canvasHeight||e<0||i<0?null:(n=this.getRegion(t,e,i),r!==n&&(void 0!==r&&a&&this.removeHighlight(),this.currentRegion=n,void 0!==n&&a&&this.renderHighlight(),!0))},clearRegionHighlight:function(){return void 0!==this.currentRegion&&(this.removeHighlight(),this.currentRegion=void 0,!0)},renderHighlight:function(){this.changeHighlight(!0)},removeHighlight:function(){this.changeHighlight(!1)},changeHighlight:function(t){},getCurrentRegionTooltip:function(){var e,i,r,a,o,s,l,u,c,h,d,f,p,g,m=this.options,v="",_=[];if(void 0===this.currentRegion)return"";if(e=this.getCurrentRegionFields(),d=m.get("tooltipFormatter"))return d(this,m,e);if(m.get("tooltipChartTitle")&&(v+='<div class="jqs jqstitle">'+m.get("tooltipChartTitle")+"</div>\n"),!(i=this.options.get("tooltipFormat")))return"";if(t.isArray(i)||(i=[i]),t.isArray(e)||(e=[e]),l=this.options.get("tooltipFormatFieldlist"),u=this.options.get("tooltipFormatFieldlistKey"),l&&u){for(c=[],s=e.length;s--;)h=e[s][u],-1!=(g=t.inArray(h,l))&&(c[g]=e[s]);e=c}for(r=i.length,p=e.length,s=0;s<r;s++)for(f=i[s],"string"==typeof f&&(f=new n(f)),a=f.fclass||"jqsfield",g=0;g<p;g++)e[g].isNull&&m.get("tooltipSkipNull")||(t.extend(e[g],{prefix:m.get("tooltipPrefix"),suffix:m.get("tooltipSuffix")}),o=f.render(e[g],m.get("tooltipValueLookups"),m),_.push('<div class="'+a+'">'+o+"</div>"));return _.length?v+_.join("\n"):""},getCurrentRegionFields:function(){},calcHighlightColor:function(t,e){var i,n,a,o,l=e.get("highlightColor"),u=e.get("highlightLighten");if(l)return l;if(u&&(i=/^#([0-9a-f])([0-9a-f])([0-9a-f])$/i.exec(t)||/^#([0-9a-f]{2})([0-9a-f]{2})([0-9a-f]{2})$/i.exec(t))){for(a=[],n=4===t.length?16:1,o=0;o<3;o++)a[o]=r(s.round(parseInt(i[o+1],16)*n*u),0,255);return"rgb("+a.join(",")+")"}return t}}),y={changeHighlight:function(e){var i,n=this.currentRegion,r=this.target,a=this.regionShapes[n];a&&(i=this.renderRegion(n,e),t.isArray(i)||t.isArray(a)?(r.replaceWithShapes(a,i),this.regionShapes[n]=t.map(i,function(t){return t.id})):(r.replaceWithShape(a,i),this.regionShapes[n]=i.id))},render:function(){var e,i,n,r,a=this.values,o=this.target,s=this.regionShapes;if(this.cls._super.render.call(this)){for(n=a.length;n--;)if(e=this.renderRegion(n))if(t.isArray(e)){for(i=[],r=e.length;r--;)e[r].append(),i.push(e[r].id);s[n]=i}else e.append(),s[n]=e.id;else s[n]=null;o.render()}}},t.fn.sparkline.line=b=i(t.fn.sparkline._base,{type:"line",init:function(t,e,i,n,r){b._super.init.call(this,t,e,i,n,r),this.vertices=[],this.regionMap=[],this.xvalues=[],this.yvalues=[],this.yminmax=[],this.hightlightSpotId=null,this.lastShapeId=null,this.initTarget()},getRegion:function(t,e,i){var n,r=this.regionMap;for(n=r.length;n--;)if(null!==r[n]&&e>=r[n][0]&&e<=r[n][1])return r[n][2]},getCurrentRegionFields:function(){var t=this.currentRegion;return{isNull:null===this.yvalues[t],x:this.xvalues[t],y:this.yvalues[t],color:this.options.get("lineColor"),fillColor:this.options.get("fillColor"),offset:t}},renderHighlight:function(){var t,e,i=this.currentRegion,n=this.target,r=this.vertices[i],a=this.options,o=a.get("spotRadius"),s=a.get("highlightSpotColor"),l=a.get("highlightLineColor");r&&(o&&s&&(t=n.drawCircle(r[0],r[1],o,void 0,s),this.highlightSpotId=t.id,n.insertAfterShape(this.lastShapeId,t)),l&&(e=n.drawLine(r[0],this.canvasTop,r[0],this.canvasTop+this.canvasHeight,l),this.highlightLineId=e.id,n.insertAfterShape(this.lastShapeId,e)))},removeHighlight:function(){var t=this.target;this.highlightSpotId&&(t.removeShapeId(this.highlightSpotId),this.highlightSpotId=null),this.highlightLineId&&(t.removeShapeId(this.highlightLineId),this.highlightLineId=null)},scanValues:function(){var t,e,i,n,r,a=this.values,o=a.length,l=this.xvalues,u=this.yvalues,c=this.yminmax;for(t=0;t<o;t++)e=a[t],i="string"==typeof a[t],n="object"==typeof a[t]&&a[t]instanceof Array,r=i&&a[t].split(":"),i&&2===r.length?(l.push(Number(r[0])),u.push(Number(r[1])),c.push(Number(r[1]))):n?(l.push(e[0]),u.push(e[1]),c.push(e[1])):(l.push(t),null===a[t]||"null"===a[t]?u.push(null):(u.push(Number(e)),c.push(Number(e))));this.options.get("xvalues")&&(l=this.options.get("xvalues")),this.maxy=this.maxyorg=s.max.apply(s,c),this.miny=this.minyorg=s.min.apply(s,c),this.maxx=s.max.apply(s,l),this.minx=s.min.apply(s,l),this.xvalues=l,this.yvalues=u,this.yminmax=c},processRangeOptions:function(){var t=this.options,e=t.get("normalRangeMin"),i=t.get("normalRangeMax");void 0!==e&&(e<this.miny&&(this.miny=e),i>this.maxy&&(this.maxy=i)),void 0!==t.get("chartRangeMin")&&(t.get("chartRangeClip")||t.get("chartRangeMin")<this.miny)&&(this.miny=t.get("chartRangeMin")),void 0!==t.get("chartRangeMax")&&(t.get("chartRangeClip")||t.get("chartRangeMax")>this.maxy)&&(this.maxy=t.get("chartRangeMax")),void 0!==t.get("chartRangeMinX")&&(t.get("chartRangeClipX")||t.get("chartRangeMinX")<this.minx)&&(this.minx=t.get("chartRangeMinX")),void 0!==t.get("chartRangeMaxX")&&(t.get("chartRangeClipX")||t.get("chartRangeMaxX")>this.maxx)&&(this.maxx=t.get("chartRangeMaxX"))},drawNormalRange:function(t,e,i,n,r){var a=this.options.get("normalRangeMin"),o=this.options.get("normalRangeMax"),l=e+s.round(i-i*((o-this.miny)/r)),u=s.round(i*(o-a)/r);this.target.drawRect(t,l,n,u,void 0,this.options.get("normalRangeColor")).append()},render:function(){var e,i,n,r,a,o,l,u,c,h,d,f,p,g,v,_,y,w,x,C,k,S,T,A,M,E=this.options,O=this.target,$=this.canvasWidth,D=this.canvasHeight,j=this.vertices,P=E.get("spotRadius"),R=this.regionMap;if(b._super.render.call(this)&&(this.scanValues(),this.processRangeOptions(),T=this.xvalues,A=this.yvalues,this.yminmax.length&&!(this.yvalues.length<2))){for(r=a=0,e=this.maxx-this.minx==0?1:this.maxx-this.minx,i=this.maxy-this.miny==0?1:this.maxy-this.miny,n=this.yvalues.length-1,P&&($<4*P||D<4*P)&&(P=0),P&&(k=E.get("highlightSpotColor")&&!E.get("disableInteraction"),(k||E.get("minSpotColor")||E.get("spotColor")&&A[n]===this.miny)&&(D-=s.ceil(P)),(k||E.get("maxSpotColor")||E.get("spotColor")&&A[n]===this.maxy)&&(D-=s.ceil(P),r+=s.ceil(P)),(k||(E.get("minSpotColor")||E.get("maxSpotColor"))&&(A[0]===this.miny||A[0]===this.maxy))&&(a+=s.ceil(P),$-=s.ceil(P)),(k||E.get("spotColor")||E.get("minSpotColor")||E.get("maxSpotColor")&&(A[n]===this.miny||A[n]===this.maxy))&&($-=s.ceil(P))),D--,void 0===E.get("normalRangeMin")||E.get("drawNormalOnTop")||this.drawNormalRange(a,r,D,$,i),l=[],u=[l],g=v=null,_=A.length,M=0;M<_;M++)c=T[M],d=T[M+1],h=A[M],f=a+s.round((c-this.minx)*($/e)),p=M<_-1?a+s.round((d-this.minx)*($/e)):$,v=f+(p-f)/2,R[M]=[g||0,v,M],g=v,null===h?M&&(null!==A[M-1]&&(l=[],u.push(l)),j.push(null)):(h<this.miny&&(h=this.miny),h>this.maxy&&(h=this.maxy),l.length||l.push([f,r+D]),o=[f,r+s.round(D-D*((h-this.miny)/i))],l.push(o),j.push(o));for(y=[],w=[],x=u.length,M=0;M<x;M++)l=u[M],l.length&&(E.get("fillColor")&&(l.push([l[l.length-1][0],r+D]),w.push(l.slice(0)),l.pop()),l.length>2&&(l[0]=[l[0][0],l[1][1]]),y.push(l));for(x=w.length,M=0;M<x;M++)O.drawShape(w[M],E.get("fillColor"),E.get("fillColor")).append();for(void 0!==E.get("normalRangeMin")&&E.get("drawNormalOnTop")&&this.drawNormalRange(a,r,D,$,i),x=y.length,M=0;M<x;M++)O.drawShape(y[M],E.get("lineColor"),void 0,E.get("lineWidth")).append();if(P&&E.get("valueSpots"))for(C=E.get("valueSpots"),void 0===C.get&&(C=new m(C)),M=0;M<_;M++)(S=C.get(A[M]))&&O.drawCircle(a+s.round((T[M]-this.minx)*($/e)),r+s.round(D-D*((A[M]-this.miny)/i)),P,void 0,S).append();P&&E.get("spotColor")&&null!==A[n]&&O.drawCircle(a+s.round((T[T.length-1]-this.minx)*($/e)),r+s.round(D-D*((A[n]-this.miny)/i)),P,void 0,E.get("spotColor")).append(),this.maxy!==this.minyorg&&(P&&E.get("minSpotColor")&&(c=T[t.inArray(this.minyorg,A)],O.drawCircle(a+s.round((c-this.minx)*($/e)),r+s.round(D-D*((this.minyorg-this.miny)/i)),P,void 0,E.get("minSpotColor")).append()),P&&E.get("maxSpotColor")&&(c=T[t.inArray(this.maxyorg,A)],O.drawCircle(a+s.round((c-this.minx)*($/e)),r+s.round(D-D*((this.maxyorg-this.miny)/i)),P,void 0,E.get("maxSpotColor")).append())),this.lastShapeId=O.getLastShapeId(),this.canvasTop=r,O.render()}}}),t.fn.sparkline.bar=w=i(t.fn.sparkline._base,y,{type:"bar",init:function(e,i,n,a,o){var h,d,f,p,g,v,_,y,b,x,C,k,S,T,A,M,E,O,$,D,j,P,R=parseInt(n.get("barWidth"),10),I=parseInt(n.get("barSpacing"),10),N=n.get("chartRangeMin"),L=n.get("chartRangeMax"),z=n.get("chartRangeClip"),H=1/0,q=-1/0;for(w._super.init.call(this,e,i,n,a,o),v=0,_=i.length;v<_;v++)D=i[v],((h="string"==typeof D&&D.indexOf(":")>-1)||t.isArray(D))&&(A=!0,h&&(D=i[v]=u(D.split(":"))),D=c(D,null),d=s.min.apply(s,D),f=s.max.apply(s,D),d<H&&(H=d),f>q&&(q=f));this.stacked=A,this.regionShapes={},this.barWidth=R,this.barSpacing=I,this.totalBarWidth=R+I,this.width=a=i.length*R+(i.length-1)*I,this.initTarget(),z&&(S=void 0===N?-1/0:N,T=void 0===L?1/0:L),g=[],p=A?[]:g;var F=[],B=[];for(v=0,_=i.length;v<_;v++)if(A)for(M=i[v],i[v]=$=[],F[v]=0,p[v]=B[v]=0,E=0,O=M.length;E<O;E++)null!==(D=$[E]=z?r(M[E],S,T):M[E])&&(D>0&&(F[v]+=D),H<0&&q>0?D<0?B[v]+=s.abs(D):p[v]+=D:p[v]+=s.abs(D-(D<0?q:H)),g.push(D));else D=z?r(i[v],S,T):i[v],null!==(D=i[v]=l(D))&&g.push(D);this.max=k=s.max.apply(s,g),this.min=C=s.min.apply(s,g),this.stackMax=q=A?s.max.apply(s,F):k,this.stackMin=H=A?s.min.apply(s,g):C,void 0!==n.get("chartRangeMin")&&(n.get("chartRangeClip")||n.get("chartRangeMin")<C)&&(C=n.get("chartRangeMin")),void 0!==n.get("chartRangeMax")&&(n.get("chartRangeClip")||n.get("chartRangeMax")>k)&&(k=n.get("chartRangeMax")),this.zeroAxis=b=n.get("zeroAxis",!0),x=C<=0&&k>=0&&b?0:0==b?C:C>0?C:k,this.xaxisOffset=x,y=A?s.max.apply(s,p)+s.max.apply(s,B):k-C,this.canvasHeightEf=b&&C<0?this.canvasHeight-2:this.canvasHeight-1,C<x?(P=A&&k>=0?q:k,(j=(P-x)/y*this.canvasHeight)!==s.ceil(j)&&(this.canvasHeightEf-=2,j=s.ceil(j))):j=this.canvasHeight,this.yoffset=j,t.isArray(n.get("colorMap"))?(this.colorMapByIndex=n.get("colorMap"),this.colorMapByValue=null):(this.colorMapByIndex=null,this.colorMapByValue=n.get("colorMap"),this.colorMapByValue&&void 0===this.colorMapByValue.get&&(this.colorMapByValue=new m(this.colorMapByValue))),this.range=y},getRegion:function(t,e,i){var n=s.floor(e/this.totalBarWidth);return n<0||n>=this.values.length?void 0:n},getCurrentRegionFields:function(){var t,e,i=this.currentRegion,n=p(this.values[i]),r=[];for(e=n.length;e--;)t=n[e],r.push({isNull:null===t,value:t,color:this.calcColor(e,t,i),offset:i});return r},calcColor:function(e,i,n){var r,a,o=this.colorMapByIndex,s=this.colorMapByValue,l=this.options;return r=this.stacked?l.get("stackedBarColor"):i<0?l.get("negBarColor"):l.get("barColor"),0===i&&void 0!==l.get("zeroColor")&&(r=l.get("zeroColor")),s&&(a=s.get(i))?r=a:o&&o.length>n&&(r=o[n]),t.isArray(r)?r[e%r.length]:r},renderRegion:function(e,i){var n,r,a,o,l,u,c,h,f,p,g=this.values[e],m=this.options,v=this.xaxisOffset,_=[],y=this.range,b=this.stacked,w=this.target,x=e*this.totalBarWidth,C=this.canvasHeightEf,k=this.yoffset;if(g=t.isArray(g)?g:[g],c=g.length,h=g[0],o=d(null,g),p=d(v,g,!0),o)return m.get("nullColor")?(a=i?m.get("nullColor"):this.calcHighlightColor(m.get("nullColor"),m),n=k>0?k-1:k,w.drawRect(x,n,this.barWidth-1,0,a,a)):void 0;for(l=k,u=0;u<c;u++){if(h=g[u],b&&h===v){if(!p||f)continue;f=!0}r=y>0?s.floor(C*(s.abs(h-v)/y))+1:1,h<v||h===v&&0===k?(n=l,l+=r):(n=k-r,k-=r),a=this.calcColor(u,h,e),i&&(a=this.calcHighlightColor(a,m)),_.push(w.drawRect(x,n,this.barWidth-1,r-1,a,a))}return 1===_.length?_[0]:_}}),t.fn.sparkline.tristate=x=i(t.fn.sparkline._base,y,{type:"tristate",init:function(e,i,n,r,a){var o=parseInt(n.get("barWidth"),10),s=parseInt(n.get("barSpacing"),10);x._super.init.call(this,e,i,n,r,a),this.regionShapes={},this.barWidth=o,this.barSpacing=s,this.totalBarWidth=o+s,this.values=t.map(i,Number),this.width=r=i.length*o+(i.length-1)*s,t.isArray(n.get("colorMap"))?(this.colorMapByIndex=n.get("colorMap"),this.colorMapByValue=null):(this.colorMapByIndex=null,this.colorMapByValue=n.get("colorMap"),this.colorMapByValue&&void 0===this.colorMapByValue.get&&(this.colorMapByValue=new m(this.colorMapByValue))),this.initTarget()},getRegion:function(t,e,i){return s.floor(e/this.totalBarWidth)},getCurrentRegionFields:function(){var t=this.currentRegion;return{isNull:void 0===this.values[t],value:this.values[t],color:this.calcColor(this.values[t],t),offset:t}},calcColor:function(t,e){var i,n=this.values,r=this.options,a=this.colorMapByIndex,o=this.colorMapByValue;return o&&(i=o.get(t))?i:a&&a.length>e?a[e]:n[e]<0?r.get("negBarColor"):n[e]>0?r.get("posBarColor"):r.get("zeroBarColor")},renderRegion:function(t,e){var i,n,r,a,o,l,u=this.values,c=this.options,h=this.target;if(i=h.pixelHeight,r=s.round(i/2),a=t*this.totalBarWidth,u[t]<0?(o=r,n=r-1):u[t]>0?(o=0,n=r-1):(o=r-1,n=2),null!==(l=this.calcColor(u[t],t)))return e&&(l=this.calcHighlightColor(l,c)),h.drawRect(a,o,this.barWidth-1,n-1,l,l)}}),t.fn.sparkline.discrete=C=i(t.fn.sparkline._base,y,{type:"discrete",init:function(e,i,n,r,a){C._super.init.call(this,e,i,n,r,a),this.regionShapes={},this.values=i=t.map(i,Number),this.min=s.min.apply(s,i),this.max=s.max.apply(s,i),this.range=this.max-this.min,this.width=r="auto"===n.get("width")?2*i.length:this.width,this.interval=s.floor(r/i.length),this.itemWidth=r/i.length,void 0!==n.get("chartRangeMin")&&(n.get("chartRangeClip")||n.get("chartRangeMin")<this.min)&&(this.min=n.get("chartRangeMin")),void 0!==n.get("chartRangeMax")&&(n.get("chartRangeClip")||n.get("chartRangeMax")>this.max)&&(this.max=n.get("chartRangeMax")),this.initTarget(),this.target&&(this.lineHeight="auto"===n.get("lineHeight")?s.round(.3*this.canvasHeight):n.get("lineHeight"))},getRegion:function(t,e,i){return s.floor(e/this.itemWidth)},getCurrentRegionFields:function(){var t=this.currentRegion;return{isNull:void 0===this.values[t],value:this.values[t],offset:t}},renderRegion:function(t,e){var i,n,a,o,l=this.values,u=this.options,c=this.min,h=this.max,d=this.range,f=this.interval,p=this.target,g=this.canvasHeight,m=this.lineHeight,v=g-m;return n=r(l[t],c,h),o=t*f,i=s.round(v-v*((n-c)/d)),a=u.get("thresholdColor")&&n<u.get("thresholdValue")?u.get("thresholdColor"):u.get("lineColor"),e&&(a=this.calcHighlightColor(a,u)),p.drawLine(o,i,o,i+m,a)}}),t.fn.sparkline.bullet=k=i(t.fn.sparkline._base,{type:"bullet",init:function(t,e,i,n,r){var a,o,l;k._super.init.call(this,t,e,i,n,r),this.values=e=u(e),l=e.slice(),l[0]=null===l[0]?l[2]:l[0],l[1]=null===e[1]?l[2]:l[1],a=s.min.apply(s,e),o=s.max.apply(s,e),a=void 0===i.get("base")?a<0?a:0:i.get("base"),this.min=a,this.max=o,this.range=o-a,this.shapes={},this.valueShapes={},this.regiondata={},this.width=n="auto"===i.get("width")?"4.0em":n,this.target=this.$el.simpledraw(n,r,i.get("composite")),e.length||(this.disabled=!0),this.initTarget()},getRegion:function(t,e,i){var n=this.target.getShapeAt(t,e,i);return void 0!==n&&void 0!==this.shapes[n]?this.shapes[n]:void 0},getCurrentRegionFields:function(){var t=this.currentRegion;return{fieldkey:t.substr(0,1),value:this.values[t.substr(1)],region:t}},changeHighlight:function(t){var e,i=this.currentRegion,n=this.valueShapes[i];switch(delete this.shapes[n],i.substr(0,1)){case"r":e=this.renderRange(i.substr(1),t);break;case"p":e=this.renderPerformance(t);break;case"t":e=this.renderTarget(t)}this.valueShapes[i]=e.id,this.shapes[e.id]=i,this.target.replaceWithShape(n,e)},renderRange:function(t,e){var i=this.values[t],n=s.round(this.canvasWidth*((i-this.min)/this.range)),r=this.options.get("rangeColors")[t-2];return e&&(r=this.calcHighlightColor(r,this.options)),this.target.drawRect(0,0,n-1,this.canvasHeight-1,r,r)},renderPerformance:function(t){var e=this.values[1],i=s.round(this.canvasWidth*((e-this.min)/this.range)),n=this.options.get("performanceColor");return t&&(n=this.calcHighlightColor(n,this.options)),this.target.drawRect(0,s.round(.3*this.canvasHeight),i-1,s.round(.4*this.canvasHeight)-1,n,n)},renderTarget:function(t){var e=this.values[0],i=s.round(this.canvasWidth*((e-this.min)/this.range)-this.options.get("targetWidth")/2),n=s.round(.1*this.canvasHeight),r=this.canvasHeight-2*n,a=this.options.get("targetColor");return t&&(a=this.calcHighlightColor(a,this.options)),this.target.drawRect(i,n,this.options.get("targetWidth")-1,r-1,a,a)},render:function(){var t,e,i=this.values.length,n=this.target;if(k._super.render.call(this)){for(t=2;t<i;t++)e=this.renderRange(t).append(),this.shapes[e.id]="r"+t,this.valueShapes["r"+t]=e.id;null!==this.values[1]&&(e=this.renderPerformance().append(),this.shapes[e.id]="p1",this.valueShapes.p1=e.id),null!==this.values[0]&&(e=this.renderTarget().append(),this.shapes[e.id]="t0",this.valueShapes.t0=e.id),n.render()}}}),t.fn.sparkline.pie=S=i(t.fn.sparkline._base,{type:"pie",init:function(e,i,n,r,a){var o,l=0;if(S._super.init.call(this,e,i,n,r,a),this.shapes={},this.valueShapes={},this.values=i=t.map(i,Number),"auto"===n.get("width")&&(this.width=this.height),i.length>0)for(o=i.length;o--;)l+=i[o];this.total=l,this.initTarget(),this.radius=s.floor(s.min(this.canvasWidth,this.canvasHeight)/2)},getRegion:function(t,e,i){var n=this.target.getShapeAt(t,e,i);return void 0!==n&&void 0!==this.shapes[n]?this.shapes[n]:void 0},getCurrentRegionFields:function(){var t=this.currentRegion;return{isNull:void 0===this.values[t],value:this.values[t],percent:this.values[t]/this.total*100,color:this.options.get("sliceColors")[t%this.options.get("sliceColors").length],offset:t}},changeHighlight:function(t){var e=this.currentRegion,i=this.renderSlice(e,t),n=this.valueShapes[e];delete this.shapes[n],this.target.replaceWithShape(n,i),this.valueShapes[e]=i.id,this.shapes[i.id]=e},renderSlice:function(t,e){var i,n,r,a,o,l=this.target,u=this.options,c=this.radius,h=u.get("borderWidth"),d=u.get("offset"),f=2*s.PI,p=this.values,g=this.total,m=d?2*s.PI*(d/360):0;for(a=p.length,r=0;r<a;r++){if(i=m,n=m,g>0&&(n=m+f*(p[r]/g)),t===r)return o=u.get("sliceColors")[r%u.get("sliceColors").length],e&&(o=this.calcHighlightColor(o,u)),l.drawPieSlice(c,c,c-h,i,n,void 0,o);m=n}},render:function(){var t,e,i=this.target,n=this.values,r=this.options,a=this.radius,o=r.get("borderWidth");if(S._super.render.call(this)){for(o&&i.drawCircle(a,a,s.floor(a-o/2),r.get("borderColor"),void 0,o).append(),e=n.length;e--;)n[e]&&(t=this.renderSlice(e).append(),this.valueShapes[e]=t.id,this.shapes[t.id]=e);i.render()}}}),t.fn.sparkline.box=T=i(t.fn.sparkline._base,{type:"box",init:function(e,i,n,r,a){T._super.init.call(this,e,i,n,r,a),this.values=t.map(i,Number),this.width="auto"===n.get("width")?"4.0em":r,this.initTarget(),this.values.length||(this.disabled=1)},getRegion:function(){return 1},getCurrentRegionFields:function(){var t=[{field:"lq",value:this.quartiles[0]},{field:"med",value:this.quartiles[1]},{field:"uq",value:this.quartiles[2]}];return void 0!==this.loutlier&&t.push({field:"lo",value:this.loutlier}),void 0!==this.routlier&&t.push({field:"ro",value:this.routlier}),void 0!==this.lwhisker&&t.push({field:"lw",value:this.lwhisker}),void 0!==this.rwhisker&&t.push({field:"rw",value:this.rwhisker}),t},render:function(){var t,e,i,n,r,o,l,u,c,h,d,f=this.target,p=this.values,g=p.length,m=this.options,v=this.canvasWidth,_=this.canvasHeight,y=void 0===m.get("chartRangeMin")?s.min.apply(s,p):m.get("chartRangeMin"),b=void 0===m.get("chartRangeMax")?s.max.apply(s,p):m.get("chartRangeMax"),w=0;if(T._super.render.call(this)){if(m.get("raw"))m.get("showOutliers")&&p.length>5?(e=p[0],t=p[1],n=p[2],r=p[3],o=p[4],l=p[5],u=p[6]):(t=p[0],n=p[1],r=p[2],o=p[3],l=p[4]);else if(p.sort(function(t,e){return t-e}),n=a(p,1),r=a(p,2),o=a(p,3),i=o-n,m.get("showOutliers")){for(t=l=void 0,c=0;c<g;c++)void 0===t&&p[c]>n-i*m.get("outlierIQR")&&(t=p[c]),p[c]<o+i*m.get("outlierIQR")&&(l=p[c]);e=p[0],u=p[g-1]}else t=p[0],l=p[g-1];this.quartiles=[n,r,o],this.lwhisker=t,this.rwhisker=l,this.loutlier=e,this.routlier=u,d=v/(b-y+1),m.get("showOutliers")&&(w=s.ceil(m.get("spotRadius")),v-=2*s.ceil(m.get("spotRadius")),d=v/(b-y+1),e<t&&f.drawCircle((e-y)*d+w,_/2,m.get("spotRadius"),m.get("outlierLineColor"),m.get("outlierFillColor")).append(),u>l&&f.drawCircle((u-y)*d+w,_/2,m.get("spotRadius"),m.get("outlierLineColor"),m.get("outlierFillColor")).append()),f.drawRect(s.round((n-y)*d+w),s.round(.1*_),s.round((o-n)*d),s.round(.8*_),m.get("boxLineColor"),m.get("boxFillColor")).append(),f.drawLine(s.round((t-y)*d+w),s.round(_/2),s.round((n-y)*d+w),s.round(_/2),m.get("lineColor")).append(),f.drawLine(s.round((t-y)*d+w),s.round(_/4),s.round((t-y)*d+w),s.round(_-_/4),m.get("whiskerColor")).append(),f.drawLine(s.round((l-y)*d+w),s.round(_/2),s.round((o-y)*d+w),s.round(_/2),m.get("lineColor")).append(),f.drawLine(s.round((l-y)*d+w),s.round(_/4),s.round((l-y)*d+w),s.round(_-_/4),m.get("whiskerColor")).append(),f.drawLine(s.round((r-y)*d+w),s.round(.1*_),s.round((r-y)*d+w),s.round(.9*_),m.get("medianColor")).append(),m.get("target")&&(h=s.ceil(m.get("spotRadius")),f.drawLine(s.round((m.get("target")-y)*d+w),s.round(_/2-h),s.round((m.get("target")-y)*d+w),s.round(_/2+h),m.get("targetColor")).append(),f.drawLine(s.round((m.get("target")-y)*d+w-h),s.round(_/2),s.round((m.get("target")-y)*d+w+h),s.round(_/2),m.get("targetColor")).append()),f.render()}}}),E=i({init:function(t,e,i,n){this.target=t,this.id=e,this.type=i,this.args=n},append:function(){return this.target.appendShape(this),this}}),O=i({_pxregex:/(\d+)(px)?\s*$/i,init:function(e,i,n){e&&(this.width=e,this.height=i,this.target=n,this.lastShapeId=null,n[0]&&(n=n[0]),t.data(n,"_jqs_vcanvas",this))},drawLine:function(t,e,i,n,r,a){return this.drawShape([[t,e],[i,n]],r,a)},drawShape:function(t,e,i,n){return this._genShape("Shape",[t,e,i,n])},drawCircle:function(t,e,i,n,r,a){return this._genShape("Circle",[t,e,i,n,r,a])},drawPieSlice:function(t,e,i,n,r,a,o){return this._genShape("PieSlice",[t,e,i,n,r,a,o])},drawRect:function(t,e,i,n,r,a){return this._genShape("Rect",[t,e,i,n,r,a])},getElement:function(){return this.canvas},getLastShapeId:function(){return this.lastShapeId},reset:function(){alert("reset not implemented")},_insert:function(e,i){t(i).html(e)},_calculatePixelDims:function(e,i,n){var r;r=this._pxregex.exec(i),this.pixelHeight=r?r[1]:t(n).height(),r=this._pxregex.exec(e),this.pixelWidth=r?r[1]:t(n).width()},_genShape:function(t,e){var i=R++;return e.unshift(i),new 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Actions":"その他のアクション","Import from File":"ファイルからの読み込み",Webhooks:"Webhooks","This history is empty":"ヒストリーは空です","No matching datasets found":"一致するデータセットが見つかりませんでした","Search datasets":"データセットを検索する","You are currently viewing a deleted history!":"消去したヒストリーをみています。","You are over your disk quota":"あなたはディスククォータを超えている",All:"一式",None:"なし","For all selected":"各項目を","Edit history tags":"ヒストリーのタグを編集","Edit history annotation":"ヒストリーのアノテーションを編集","Click to rename history":"ヒストリーの名前を変更するにはクリック","Operations on multiple datasets":"複数のデータセットに対する操作","Permanently delete datasets":"永久にデータセットを削除","This will permanently remove the data in your datasets. Are you sure?":"これは永久にあなたのデータセット内のデータを削除します。本当に？",Dataset:"データセット","This history is empty. Click 'Get Data' on the left tool menu to start":"ヒストリーは空です。解析をはじめるには、左パネルの 'データ取得' をクリック","You must be logged in to create histories":"ヒストリーを作成するためにはログインする必要があります","View data":"データを表示",Download:"ダウンロード","Download dataset":"データセットをダウンロード","View details":"細部を表示","This job is waiting to run":"ジョブは実行待ちです","This job is currently running":"ジョブは実行中です","An error occurred with this dataset":"このジョブの実行中に発生したエラー","No data":"データ無し","This dataset has been deleted and removed from disk":"このデータセットは、永続的にディスクから削除されました","This dataset has been deleted":"このデータセットは削除されました","This dataset has been hidden":"このデータセットは、非表示にされた",format:"フォーマット",database:"データベース","Edit attributes":"変数を編集する",Delete:"削除する","View or report this error":"このエラーを届け出る","Run this job again":"もう一度このジョブを実行する",Visualize:"可視化する","Undelete it":"復元する","Permanently remove it from disk":"永久にディスクから削除","Unhide it":"非表示解除する","Search Tool Shed":"Tool Shed で探す","Search Tool Shed (Beta)":"Tool Shed (Beta) で探す","Monitor installing repositories":"インストールレポジトリのモニタ","Manage installed tools":"インストールしたツールの管理","Reset metadata":"メタデータのリセット","Download local tool":"ローカルツールのダウンロード","Tool lineage":"ツール系統","Reload a tool's configuration":"ツールのコンフィグのリロード","Review tool migration stages":"ツール移行ステージのレビュー","View Tool Error Logs":"ツールのエラーログ","Manage Display Whitelist":"表示ホワイトリストの管理","Manage Tool Dependencies":"ツール依存関係の管理",Users:"ユーザー",Groups:"グループ","API keys":"API キー","Impersonate a user":"ユーザー偽装",Data:"データ",Quotas:"クォータ",Roles:"ロール","Local data":"ローカルデータ","Form definitions":"フォーム定義",Administration:"管理",Server:"サーバー","Tools and Tool Shed":"ツールと Tool Shed","User Management":"ユーザ管理","Form Definitions":"フォーム定義","Your workflows":"あなたのワークフロー"},__fr:{"Analyze Data":"Analyse de données",Workflow:"Workflow","Shared Data":"Données partagées","Data Libraries":"Bibliothèque de données",Histories:!1,Workflows:!1,Visualizations:"Visualisations",Pages:"Pages",Visualization:!1,"New Track Browser":"Nouveau Navigateur de Tracks/Pistes","Saved 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supprimées",Downloads:"Télécharger","Export Tool Citations":"Exporter les citations des outils","Export History to File":"Exporter l'Historique dans un fichier","Other Actions":"Autres actions","Import from File":"Importer depuis un fichier",Webhooks:"Webhooks","This history is empty":"Cet historique est vide","No matching datasets found":"Aucunes données correspondantes n'ont été trouvées","An error occurred while getting updates from the server":"Une erreur s'est produite lors de la réception des données depuis le serveur","Please contact a Galaxy administrator if the problem persists":"Veuillez contacter un administrateur de l'instance Galaxy si ce problème persiste","search datasets":"Rechercher des données","You are currently viewing a deleted history!":"Vous consultez actuellement un historique supprimé!","You are over your disk quota":"Vous avez dépassé votre quota d'espace disque","Tool execution is on hold until your disk usage drops below your allocated quota":"L'exécution de l'outil est en attente tant que votre utilisation d'espace disque dépasse le quota attribué",All:"Tout",None:"Aucun","For all selected":"Pour toute la sélection","Edit history tags":"Editer les mots-clés de l'historique","Edit history Annotation":"Editer l'annotation de l'historique","Click to rename history":"Cliquer pour renommer l'historique","Operations on multiple datasets":"Opérer sur plusieurs jeux de données en même temps","Hide datasets":"Cacher les jeux de données","Unhide datasets":"Afficher les jeux de données cachés","Delete datasets":"Supprimer les jeux de données","Undelete datasets":"Restaurer les jeux de données supprimés","Permanently delete datasets":"Supprimer définitivement les jeux de données","This will permanently remove the data in your datasets. Are you sure?":"Cela supprimera de manière permanente les données de votre historique. Êtes-vous certain?",Dataset:"Jeu de données",Annotation:"Annotation","This history is empty. Click 'Get Data' on the left tool menu to start":"Cet historique est vide. Cliquer sur 'Get Data' au niveau du menu d'outils à gauche pour démarrer","You must be logged in to create histories":"Vous devez être connecté pour créer un historique","load your own data":"Charger vos propres données","get data from an external source":"Charger des données depuis une source externe","Include Deleted Datasets":"Inclure les jeux de données supprimés","Include Hidden Datasets":"Inclure les jeux de données cachés","Unable to purge dataset":"Impossible de purger le jeu de données","Cannot display datasets removed from disk":"Impossible de visualiser les jeux de données supprimés du disque","This dataset must finish uploading before it can be viewed":"Le jeu de données doit être totalement téléversé avant de pouvoir être visualiser","This dataset is not yet viewable":"Ce jeu de données n'est pas visualisable","View data":"Voir les données",Download:!1,"Download dataset":"Télécharger le jeu de données","Additional files":"Fichiers additionnels","View details":"Voir les détails","This is a new dataset and not all of its data are available yet":"Il s'agit d'un nouveau jeu de données et seule une partie des données est accessible pour le moment","You do not have permission to view this dataset":"Vous n'avez pas la permission de voir ce jeu de données","The job creating this dataset was cancelled before completion":"Le processus à l'origine de ce jeu de données a été annulé prématurément","This job is waiting to run":"Ce calcul est en attente de traitement","This dataset is currently uploading":"Ce jeu de données est en cours de téléversement","Metadata is being auto-detected":"Les métadonnées sont auto-détectées","This job is currently running":"Le traitement est en cours",'This job is paused. Use the "Resume Paused Jobs" in the history menu to resume':'Ce traitement est en pause. 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i="width"==t||"height"==t?1:-1,n=e*this.options.cell-i*this.options.margin;return"top"==t&&(n+=this.top),n},_toGrid:function(t){return{top:this._toGridCoord("top",t.top),left:this._toGridCoord("left",t.left),width:this._toGridCoord("width",t.width),height:this._toGridCoord("height",t.height)}},_toPixel:function(t){return{top:this._toPixelCoord("top",t.top),left:this._toPixelCoord("left",t.left),width:this._toPixelCoord("width",t.width),height:this._toPixelCoord("height",t.height)}},_isCollision:function(t){for(var e in this.frame_list){var i=this.frame_list[e];if(null!==i.grid_location&&function(t,e){return!(t.left>e.left+e.width-1||t.left+t.width-1<e.left||t.top>e.top+e.height-1||t.top+t.height-1<e.top)}(t,i.grid_location))return!0}return!1},_locationRank:function(t){return t.top*this.cols+t.left},_panelRefresh:function(t){this.cols=parseInt(n(window).width()/this.options.cell,10)+1,this._frameInsert(null,null,t)},_panelAnimationComplete:function(){var t=this;n(".frame").promise().done(function(){t._panelScroll(0,!0)})},_panelScroll:function(t,e){var i=this.top-this.options.scroll*t;if(i=Math.max(i,this.top_max),i=Math.min(i,this.options.top_min),this.top!=i){for(var n in this.frame_list){var r=this.frame_list[n];if(null!==r.grid_location){var a={top:r.screen_location.top-(this.top-i),left:r.screen_location.left};this._frameOffset(r,a,e)}}this.top=i}this.render()},_frameInit:function(t,e){t.id=e,t.screen_location={},t.grid_location={},t.grid_rank=null,t.$el.attr("id",e.substring(1))},_frameInsert:function(t,e,i){var a=this,o=[];t&&(t.grid_location=null,o.push([t,this._locationRank(e)])),r.each(this.frame_list,function(t){null!==t.grid_location&&(t.grid_location=null,o.push([t,t.grid_rank]))}),o.sort(function(t,e){return t[1]<e[1]?-1:t[1]>e[1]?1:0}),r.each(o,function(t){a._framePlace(t[0],i)}),this.top_max=0,r.each(this.frame_list,function(t){null!==t.grid_location&&(a.top_max=Math.max(a.top_max,t.grid_location.top+t.grid_location.height))}),this.top_max=n(window).height()-this.top_max*this.options.cell-2*this.options.margin,this.top_max=Math.min(this.top_max,this.options.top_min),this.render()},_framePlace:function(t,e){t.grid_location=null;for(var i=this._toGrid(this._frameScreen(t)),n=!1,r=0;r<this.options.rows;r++){for(var a=0;a<Math.max(1,this.cols-i.width);a++)if(i.top=r,i.left=a,!this._isCollision(i)){n=!0;break}if(n)break}n?this._frameGrid(t,i,e):console.log("Grid dimensions exceeded.")},_frameFocus:function(t,e){t.$el.css("z-index",this.frame_z+(e?1:0))},_frameOffset:function(t,e,i){if(t.screen_location.left=e.left,t.screen_location.top=e.top,i){this._frameFocus(t,!0);var n=this;t.$el.animate({top:e.top,left:e.left},"fast",function(){n._frameFocus(t,!1)})}else t.$el.css({top:e.top,left:e.left})},_frameResize:function(t,e){t.$el.css({width:e.width,height:e.height}),t.screen_location.width=e.width,t.screen_location.height=e.height},_frameGrid:function(t,e,i){t.grid_location=e,this._frameOffset(t,this._toPixel(e),i),t.grid_rank=this._locationRank(e)},_frameScreen:function(t){var e=t.screen_location;return{top:e.top,left:e.left,width:e.width,height:e.height}}});e.default={View:l}}).call(e,i(2),i(0),i(1))},function(t,e,i){"use strict";(function(t,i,n){Object.defineProperty(e,"__esModule",{value:!0}),e.default=t.Model.extend({defaults:{url_base:"",async:!1,async_ops:[],categorical_filters:[],filters:{},sort_key:null,show_item_checkboxes:!1,advanced_search:!1,cur_page:1,num_pages:1,operation:void 0,item_ids:void 0},add_filter:function(t,e,i){if(i){var n,r=this.attributes.filters[t];if(null===r||void 0===r)n=e;else if("string"==typeof r)if("All"==r||r==e)n=e;else{var a=[];a[0]=r,a[1]=e,n=a}else 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t&&t.__esModule?t:{default:t}}(r);e.default={grid:function(t){var e="";return e=t.embedded?this.grid_header(t)+this.grid_table(t):'<div class="loading-elt-overlay"></div><table><tr><td width="75%">'+this.grid_header(t)+'</td><td></td><td></td></tr><tr><td width="100%" id="grid-message" valign="top"></td><td></td><td></td></tr></table>'+this.grid_table(t),t.info_text&&(e+='<br><div class="toolParamHelp" style="clear: both;">'+t.info_text+"</div>"),e},grid_table:function(){return'\n            <form method="post" onsubmit="return false;">\n                <table id="grid-table" class="grid">\n                    <thead id="grid-table-header"></thead>\n                    <tbody id="grid-table-body"></tbody>\n                    <tfoot id="grid-table-footer"></tfoot>\n                </table>\n            </form>'},grid_header:function(t){var e='<div class="grid-header">';if(t.embedded||(e+="<h2>"+t.title+"</h2>"),t.global_actions){e+='<ul class="manage-table-actions">';var i=t.global_actions.length>=3;i&&(e+='<li><a class="action-button" id="popup-global-actions" class="menubutton">Actions</a></li><div popupmenu="popup-global-actions">');var n=!0,r=!1,a=void 0;try{for(var o,s=t.global_actions[Symbol.iterator]();!(n=(o=s.next()).done);n=!0){var l=o.value;e+='<li><a class="action-button use-target" target="'+l.target+'" href="'+l.url_args+'" onclick="return false;" >'+l.label+"</a></li>"}}catch(t){r=!0,a=t}finally{try{!n&&s.return&&s.return()}finally{if(r)throw a}}i&&(e+="</div>"),e+="</ul>"}return t.insert&&(e+=t.insert),e+=this.grid_filters(t),e+="</div>"},header:function(t){var e="<tr>";t.show_item_checkboxes&&(e+="<th>",t.items.length>0&&(e+='<input type="checkbox" id="check_all" name=select_all_checkbox value="true"><input type="hidden" name=select_all_checkbox value="true">'),e+="</th>");var i=!0,n=!1,r=void 0;try{for(var a,o=t.columns[Symbol.iterator]();!(i=(a=o.next()).done);i=!0){var s=a.value;s.visible&&(e+='<th id="'+s.key+'-header">',s.href?e+='<a href="'+s.href+'" class="sort-link" sort_key="'+s.key+'">'+s.label+"</a>":e+=s.label,e+='<span class="sort-arrow">'+s.extra+"</span></th>")}}catch(t){n=!0,r=t}finally{try{!i&&o.return&&o.return()}finally{if(n)throw r}}return e+="</tr>"},body:function(e){var i="";0===e.items.length&&(i+='<tr><td colspan="100"><em>No Items</em></td></tr>');var n=!0,r=!1,a=void 0;try{for(var o,s=e.items[Symbol.iterator]();!(n=(o=s.next()).done);n=!0){var l=o.value;i+="<tr ",e.current_item_id==l.id&&(i+='class="current"'),i+=">",e.show_item_checkboxes&&(i+='<td style="width: 1.5em;"><input type="checkbox" name="id" value="'+l.encode_id+'" id="'+l.encode_id+'" class="grid-row-select-checkbox" /></td>');var u=!0,c=!1,h=void 0;try{for(var d,f=e.columns[Symbol.iterator]();!(u=(d=f.next()).done);u=!0){var p=d.value;if(p.visible){var g="";p.nowrap&&(g='style="white-space:nowrap;"');var m=l.column_config[p.label],v=m.link,_=m.value,y=m.target;"string"===t.type(_)&&(_=_.replace(/\/\//g,"/"));var b="",w="";p.attach_popup&&(b="grid-"+l.encode_id+"-popup",w="menubutton",""!==v&&(w+=" split"),w+=" popup"),i+="<td "+g+">",v?(0!==e.operations.length&&(i+='<div id="'+b+'" class="'+w+'" style="float: left;">'),i+='<a class="menubutton-label use-target" target="'+y+'" href="'+v+'" onclick="return false;">'+_+"</a>",0!==e.operations.length&&(i+="</div>")):i+='<div id="'+b+'" class="'+w+'"><label id="'+p.label_id_prefix+l.encode_id+'" for="'+l.encode_id+'">'+(_||"")+"</label></div>",i+="</td>"}}}catch(t){c=!0,h=t}finally{try{!u&&f.return&&f.return()}finally{if(c)throw h}}i+="</tr>"}}catch(t){r=!0,a=t}finally{try{!n&&s.return&&s.return()}finally{if(r)throw a}}return i},footer:function(t){var e="";if(t.use_paging&&t.num_pages>1){var i=t.num_page_links,n=t.cur_page_num,r=t.num_pages,a=i/2,o=n-a,s=0;o<=0&&(o=1,s=a-(n-o));var l,u=a+s,c=n+u;c<=r?l=0:(c=r,l=u-(c+1-n)),0!==l&&(o-=l)<1&&(o=1),e+='<tr id="page-links-row">',t.show_item_checkboxes&&(e+="<td></td>"),e+='<td colspan="100"><span id="page-link-container">Page:',o>1&&(e+='<span class="page-link" id="page-link-1"><a href="javascript:void(0);" page_num="1" onclick="return false;">1</a></span> ...');for(var h=o;h<c+1;h++)h==t.cur_page_num?e+='<span class="page-link inactive-link" id="page-link-'+h+'">'+h+"</span>":e+='<span class="page-link" id="page-link-'+h+'"><a href="javascript:void(0);" onclick="return false;" page_num="'+h+'">'+h+"</a></span>";c<r&&(e+='...<span class="page-link" id="page-link-'+r+'"><a href="javascript:void(0);" onclick="return false;" page_num="'+r+'">'+r+"</a></span>"),e+="</span>",e+='\n                    <span class="page-link" id="show-all-link-span"> | <a href="javascript:void(0);" onclick="return false;" page_num="all">Show All</a></span>\n                    </td>\n                </tr>'}if(t.show_item_checkboxes){e+='\n                <tr>\n                    <input type="hidden" id="operation" name="operation" value="">\n                    <td></td>\n                    <td colspan="100">\n                        For <span class="grid-selected-count"></span> selected items: \n            ';var d=!0,f=!1,p=void 0;try{for(var g,m=t.operations[Symbol.iterator]();!(d=(g=m.next()).done);d=!0){var v=g.value;v.allow_multiple&&(e+='<input type="button" value="'+v.label+'" class="operation-button action-button">&nbsp;')}}catch(t){f=!0,p=t}finally{try{!d&&m.return&&m.return()}finally{if(f)throw p}}e+="</td></tr>"}var _=!1,y=!0,b=!1,w=void 0;try{for(var x,C=t.operations[Symbol.iterator]();!(y=(x=C.next()).done);y=!0){if(x.value.global_operation){_=!0;break}}}catch(t){b=!0,w=t}finally{try{!y&&C.return&&C.return()}finally{if(b)throw w}}if(_){e+='<tr><td colspan="100">';var k=!0,S=!1,T=void 0;try{for(var A,M=t.operations[Symbol.iterator]();!(k=(A=M.next()).done);k=!0){var E=A.value;E.global_operation&&(e+='<a class="action-button" href="'+E.global_operation+'">'+E.label+"</a>")}}catch(t){S=!0,T=t}finally{try{!k&&M.return&&M.return()}finally{if(S)throw T}}e+="</td></tr>"}return t.legend&&(e+='<tr><td colspan="100">'+t.legend+"</td></tr>"),e},message:function(t){var e=t.status;return-1!=["success","ok"].indexOf(e)&&(e="done"),'<p><div class="'+e+'message transient-message">'+n.escape(t.message)+'</div><div style="clear: both"></div></p>'},grid_filters:function(t){var e=t.default_filter_dict,i=t.filters,n="none";t.advanced_search&&(n="block");var r=!1,a=!0,o=!1,s=void 0;try{for(var l,u=t.columns[Symbol.iterator]();!(a=(l=u.next()).done);a=!0){var c=l.value;if("advanced"==c.filterable){var h=c.key,d=i[h],f=e[h];d&&f&&d!=f&&(n="block"),r=!0}}}catch(t){o=!0,s=t}finally{try{!a&&u.return&&u.return()}finally{if(o)throw s}}var p="block";"block"==n&&(p="none");var g='<div id="standard-search" style="display: '+p+';"><table><tr><td style="padding: 0;"><table>',m=!0,v=!1,_=void 0;try{for(var y,b=t.columns[Symbol.iterator]();!(m=(y=b.next()).done);m=!0){var w=y.value;"standard"==w.filterable&&(g+=this.grid_column_filter(t,w))}}catch(t){v=!0,_=t}finally{try{!m&&b.return&&b.return()}finally{if(v)throw _}}g+="</table></td></tr><tr><td>",r&&(g+='<a href="" class="advanced-search-toggle">Advanced Search</a>'),g+="</td></tr></table></div>",g+='<div id="advanced-search" style="display: '+n+'; margin-top: 5px; border: 1px solid #ccc;"><table><tr><td style="text-align: left" colspan="100"><a href="" class="advanced-search-toggle">Close Advanced Search</a></td></tr>';var x=!0,C=!1,k=void 0;try{for(var S,T=t.columns[Symbol.iterator]();!(x=(S=T.next()).done);x=!0){var A=S.value;"advanced"==A.filterable&&(g+=this.grid_column_filter(t,A))}}catch(t){C=!0,k=t}finally{try{!x&&T.return&&T.return()}finally{if(C)throw k}}return g+="</table></div>"},grid_column_filter:function(e,i){var n=e.filters,r=i.label,a=i.key;"advanced"==i.filterable&&(r=r.toLowerCase());var o="<tr>";if("advanced"==i.filterable&&(o+='<td align="left" style="padding-left: 10px">'+r+":</td>"),o+='<td style="padding-bottom: 1px;">',i.is_text){o+='<form class="text-filter-form" column_key="'+a+'" action="'+e.url+'" method="get" >';var s=!0,l=!1,u=void 0;try{for(var c,h=e.columns[Symbol.iterator]();!(s=(c=h.next()).done);s=!0){var d=c.value,f=n[d.key];f&&"All"!=f&&(d.is_text&&(f=JSON.stringify(f)),o+='<input type="hidden" id="'+d.key+'" name="f-'+d.key+'" value="'+f+'"/>')}}catch(t){l=!0,u=t}finally{try{!s&&h.return&&h.return()}finally{if(l)throw u}}o+='<span id="'+a+'-filtering-criteria">';var p=n[a];if(p){var g=t.type(p);if("string"==g&&"All"!=p&&(o+=this.filter_element(a,p)),"array"==g)for(var m in p){var v=p;v=v.slice(m),o+=this.filter_element(a,p[m])}}o+="</span>";var _="",y=20;"standard"==i.filterable&&(_=i.label.toLowerCase(),_.length<20&&(y=_.length),y+=4),o+='\n                <span class="search-box">\n                    <input class="search-box-input" id="input-'+a+'-filter" name="f-'+a+'" type="text" placeholder="'+_+'" size="'+y+'"/>\n                    <button type="submit" style="background: transparent; border: none; padding: 4px; margin: 0px;">\n                        <i class="fa fa-search"></i>\n                    </button>\n                </span>\n            </form>'}else{o+='<span id="'+a+'-filtering-criteria">';var b=!1;for(var w in e.categorical_filters[a]){var x=e.categorical_filters[a][w],C="",k="";for(var S in x)C=S,k=x[S];b&&(o+=" | "),b=!0;var T=n[a];T&&x[a]&&T==k?o+='<span class="categorical-filter '+a+'-filter current-filter">'+w+"</span>":o+='<span class="categorical-filter '+a+'-filter"><a href="javascript:void(0);" filter_key="'+C+'" filter_val="'+k+'">'+w+"</a></span>"}o+="</span>"}return o+="</td></tr>"},filter_element:function(t,e){return'<span class="text-filter-val">'+(e=a.default.sanitize(e))+'<a href="javascript:void(0);" filter_key="'+t+'" filter_val="'+e+'"><i class="fa fa-times" style="padding-left: 5px; padding-bottom: 6px;"/></a></span>'}}}).call(e,i(0),i(1))},function(t,e,i){"use strict";(function(t,n){Object.defineProperty(e,"__esModule",{value:!0});var r=i(5),a=function(t){return t&&t.__esModule?t:{default:t}}(r),o=t.View.extend({initialize:function(e){var i=this;this.model=e&&e.model||new t.Model({id:a.default.uid(),min:null,max:null,step:null,precise:!1,split:1e4,value:null,onchange:function(){}}).set(e),this.setElement(this._template()),this.$el.attr("id",this.model.id),this.$text=this.$(".ui-form-slider-text"),this.$slider=this.$(".ui-form-slider-element");var r=[];this.$text.on("change",function(){i.value(n(this).val())}).on("keyup",function(t){r[t.which]=!1}).on("keydown",function(t){var 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0!==t&&(null===t||""===t||this._isParameter(t)||(isNaN(t)&&(t=0),!e.precise&&(t=Math.round(t)),null!==e.max&&(t=Math.min(t,e.max)),null!==e.min&&(t=Math.max(t,e.min))),this.model.set("value",t),this.model.trigger("change"),e.onchange(t)),this.model.get("value")},_isParameter:function(t){return this.model.get("is_workflow")&&"$"===String(t).substring(0,1)},_template:function(){return'<div class="ui-form-slider"><input class="ui-form-slider-text" type="text"/><div class="ui-form-slider-element"/></div>'}});e.default={View:o}}).call(e,i(2),i(0))},function(t,e,i){"use strict";(function(t,n){function r(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var a=i(5),o=r(a),s=i(115),l=r(s),u=l.default.BaseIcons.extend({initialize:function(t){t.type=t.display||"checkbox",t.multiple="checkbox"==t.type,l.default.BaseIcons.prototype.initialize.call(this,t)},_setValue:function(e){if(l.default.BaseIcons.prototype._setValue.call(this,e),void 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e.default=t,e}(r),o=t.View.extend({className:"track-header",initialize:function(){this.model.config.get("name").on("change:value",this.update_name,this),this.render()},render:function(){this.$el.append(n("<div/>").addClass(this.model.drag_handle_class)),this.$el.append(n("<div/>").addClass("track-name").text(this.model.config.get_value("name"))),this.action_icons={},this.render_action_icons(),this.$el.dblclick(function(t){t.stopPropagation()}),this.$el.append(n("<div style='clear: both'/>"))},update_name:function(){this.$el.find(".track-name").text(this.model.config.get_value("name"))},render_action_icons:function(){var t=this;this.icons_div=n("<div/>").addClass("track-icons").hide().appendTo(this.$el),a.each(this.model.action_icons_def,function(e){t.add_action_icon(e.name,e.title,e.css_class,e.on_click_fn,e.prepend,e.hide)}),this.set_display_modes(this.model.display_modes)},add_action_icon:function(t,e,i,r,a,o){var s=this;this.action_icons[t]=n("<a/>").attr("title",e).addClass("icon-button").addClass(i).tooltip().click(function(){r(s.model)}).appendTo(this.icons_div),o&&this.action_icons[t].hide()},set_display_modes:function(t,e){if(t){this.model.display_modes=t,this.model.mode=e||this.model.config.get_value("mode")||this.model.display_modes[0],this.action_icons.mode_icon.attr("title","Set display mode (now: "+this.mode+")");for(var i=this.model,n={},r=0,a=i.display_modes.length;r<a;r++){var o=i.display_modes[r];n[o]=function(t){return function(){i.change_mode(t)}}(o)}make_popupmenu(this.action_icons.mode_icon,n)}}});e.default={TrackHeaderView:o}}).call(e,i(2),i(0))},function(t,e,i){"use strict";Object.defineProperty(e,"__esModule",{value:!0});var n=i(1),r=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var i in t)Object.prototype.hasOwnProperty.call(t,i)&&(e[i]=t[i]);return e.default=t,e}(n),a=r.extend,o=function(t,e){this.slot=t,this.feature=e},s=function(t,e,i,n){this.slots={},this.start_end_dct={},this.w_scale=t,this.mode=e,this.include_label="Pack"===e,this.max_rows=i,this.measureText=n};a(s.prototype,{_get_draw_coords:function(t){var e=Math.floor(t[1]*this.w_scale),i=Math.ceil(t[2]*this.w_scale),n=t[3];if(void 0!==n&&this.include_label){var r=this.measureText(n).width+7;e-r>=0?(e-=r,"left"):(i+=r,"right")}return[e,i]},_find_slot:function(t){for(var e=t[0],i=t[1],n=0;n<=this.max_rows;n++){var r=!1,a=this.start_end_dct[n];if(void 0!==a)for(var o=0,s=a.length;o<s;o++){var l=a[o];if(i>l[0]&&e<l[1]){r=!0;break}}if(!r)return n}return-1},slot_features:function(t){for(var e,i,n=this.start_end_dct,r=[],a=0,s=0,l=t.length;s<l;s++){e=t[s],i=e[0];var u=this.slots[i];if(u){if(e[1]<u.feature[1]||u.feature[2]<e[2])for(var c=this._get_draw_coords(u.feature),h=this._get_draw_coords(e),d=this.start_end_dct[u.slot],f=0;f<d.length;f++){var p=d[f];p[0]===c[0]&&p[1]===c[1]&&(d[f]=h)}a=Math.max(a,this.slots[i].slot)}else r.push(s)}for(var s=0,l=r.length;s<l;s++){e=t[r[s]],i=e[0];var g=this._get_draw_coords(e),m=this._find_slot(g);m>=0&&(void 0===n[m]&&(n[m]=[]),n[m].push(g),this.slots[i]=new o(m,e),a=Math.max(a,m))}return a+1}}),e.default={FeatureSlotter:s}},function(t,e,i){"use strict";Object.defineProperty(e,"__esModule",{value:!0});var n=i(1),r=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var i in t)Object.prototype.hasOwnProperty.call(t,i)&&(e[i]=t[i]);return e.default=t,e}(n),a=function(t,e){var i=t[0],n=t[1],r=e[0],a=e[1];return i<r?n<=r?1001:n<=a?1003:1002:i>a?1006:n<=a?1005:1004},o=function(t,e){var i=a(t,e);return 1001!==i&&1006!==i},s=function(t,e,i,n,r,a){void 0===a&&(a=4);var o,s=n-e,l=r-i,u=Math.floor(Math.sqrt(s*s+l*l)/a),c=s/u,h=l/u;for(o=0;o<u;o++,e+=c,i+=h)o%2==0&&t.fillRect(e,i,a,1)},l=function(t,e,i,n){var r=e-n/2,a=e+n/2,o=i-Math.sqrt(3*n/2);t.beginPath(),t.moveTo(r,o),t.lineTo(a,o),t.lineTo(e,i),t.lineTo(r,o),t.strokeStyle=this.fillStyle,t.fill(),t.stroke(),t.closePath()},u=function(t){this.default_val=t||1};u.prototype.gen_val=function(t){return this.default_val};var c=function(t){this.incomplete_features=t.incomplete_features,this.feature_mapper=t.feature_mapper},h=function(t,e,i,n,a){this.data=t,this.view_start=e,this.view_end=i,this.prefs=r.extend({},this.default_prefs,n),this.mode=a};h.prototype.default_prefs={},h.prototype.draw=function(t,e,i,n){},h.prototype.get_start_draw_pos=function(t,e){return this._chrom_pos_to_draw_pos(t,e,-.5)},h.prototype.get_end_draw_pos=function(t,e){return this._chrom_pos_to_draw_pos(t,e,.5)},h.prototype.get_draw_pos=function(t,e){return this._chrom_pos_to_draw_pos(t,e,0)},h.prototype._chrom_pos_to_draw_pos=function(t,e,i){return Math.floor(e*(Math.max(0,t-this.view_start)+i))};var d=function(t,e,i,n,r){h.call(this,t,e,i,n,r)};d.prototype.default_prefs={min_value:void 0,max_value:void 0,mode:"Histogram",color:"#000",overflow_color:"#F66"},d.prototype.draw=function(t,e,i,n){var a=!1,o=this.prefs.min_value,s=this.prefs.max_value,l=s-o,u=i,c=this.view_start,h=this.mode,d=this.data;t.save();var f=Math.round(i+o/l*i);"Intensity"!==h&&(t.fillStyle="#aaa",t.fillRect(0,f,e,1)),t.beginPath();var p,g,m;m=d.length>1?r.map(d.slice(0,-1),function(t,e){return Math.ceil((d[e+1][0]-d[e][0])*n)}):[10];for(var v,_=this.prefs.block_color||this.prefs.color,y=parseInt(_.slice(1),16),b=(16711680&y)>>16,w=(65280&y)>>8,x=255&y,C=!1,k=!1,S=0,T=d.length;S<T;S++)if(t.fillStyle=t.strokeStyle=_,C=k=!1,v=m[S],p=Math.floor((d[S][0]-c-.5)*n),null!==(g=d[S][1])){if(g<o?(k=!0,g=o):g>s&&(C=!0,g=s),"Histogram"===h)g=Math.round(g/l*u),t.fillRect(p,f,v,-g);else if("Intensity"===h){var A=(g-o)/l,M=Math.round(b+(255-b)*(1-A)),E=Math.round(w+(255-w)*(1-A)),O=Math.round(x+(255-x)*(1-A));t.fillStyle="rgb("+M+","+E+","+O+")",t.fillRect(p,0,v,u)}else g=Math.round(u-(g-o)/l*u),a?t.lineTo(p,g):(a=!0,"Filled"===h?(t.moveTo(p,u),t.lineTo(p,g)):t.moveTo(p,g));if(t.fillStyle=this.prefs.overflow_color,C||k){var $;"Histogram"===h||"Intensity"===h?$=v:(p-=2,$=4),C&&t.fillRect(p,0,$,3),k&&t.fillRect(p,u-3,$,3)}t.fillStyle=_}else a&&"Filled"===h&&t.lineTo(p,u),a=!1;"Filled"===h?(a&&(t.lineTo(p,f),t.lineTo(0,f)),t.fill()):t.stroke(),t.restore()};var f=function(t){this.feature_positions={},this.slot_height=t,this.translation=0,this.y_translation=0};f.prototype.map_feature_data=function(t,e,i,n){this.feature_positions[e]||(this.feature_positions[e]=[]),this.feature_positions[e].push({data:t,x_start:i,x_end:n})},f.prototype.get_feature_data=function(t,e){var i,n=Math.floor((e-this.y_translation)/this.slot_height);if(!this.feature_positions[n])return null;t+=this.translation;for(var r=0;r<this.feature_positions[n].length;r++)if(i=this.feature_positions[n][r],t>=i.x_start&&t<=i.x_end)return i.data};var p=function(t,e,i,n,r,a,o){h.call(this,t,e,i,n,r),this.alpha_scaler=a||new u,this.height_scaler=o||new u,this.max_label_length=200};p.prototype.default_prefs={block_color:"#FFF",connector_color:"#FFF"},r.extend(p.prototype,{get_required_height:function(t,e){var i=this.get_row_height(),n=i,r=this.mode;return"no_detail"!==r&&"Squish"!==r&&"Pack"!==r||(i=t*n),i+this.get_top_padding(e)},get_top_padding:function(t){return 0},draw:function(t,e,i,n,r){var a=this.data,o=this.view_start,s=this.view_end;t.save(),t.fillStyle=this.prefs.block_color,t.textAlign="right";for(var l,u=this.get_row_height(),h=new f(u),d=[],p=0,g=a.length;p<g;p++){var m=a[p],v=m[0],_=m[1],y=m[2],b=r&&void 0!==r[v]?r[v].slot:null;("Dense"===this.mode||null!==b)&&_<s&&y>o&&(l=this.draw_element(t,this.mode,m,b,o,s,n,u,e),h.map_feature_data(m,b,l[0],l[1]),(_<o||y>s)&&d.push(m))}return t.restore(),h.y_translation=this.get_top_padding(e),new c({incomplete_features:d,feature_mapper:h})},draw_element:function(t,e,i,n,r,a,o,s,l){return[0,0]}});var g=function(t,e,i,n,r,a,o){p.call(this,t,e,i,n,r,a,o),this.draw_background_connector=!0,this.draw_individual_connectors=!1};r.extend(g.prototype,p.prototype,{get_row_height:function(){var t=this.mode;return"Dense"===t?10:"no_detail"===t?3:"Squish"===t?5:10},draw_element:function(t,e,i,n,r,a,o,s,l){var u,c=(i[0],i[1]),h=i[2],d=i[3],f=i[4],p=Math.floor(Math.max(0,(c-r-.5)*o)),g=Math.ceil(Math.min(l,Math.max(0,(h-r-.5)*o))),m=p,v=g,u=("Dense"===e?0:0+n)*s+this.get_top_padding(l),_=null,y=null,b=f&&"+"!==f&&"."!==f?this.prefs.reverse_strand_color:this.prefs.block_color,w=this.prefs.label_color;if(t.globalAlpha=this.alpha_scaler.gen_val(i),"Dense"===e&&(n=1),"no_detail"===e)t.fillStyle=b,t.fillRect(p,u+5,g-p,1);else{var x=i[5],C=i[6],k=i[7],S=!0;x&&C&&(_=Math.floor(Math.max(0,(x-r)*o)),y=Math.ceil(Math.min(l,Math.max(0,(C-r)*o))));var T,A;if("Squish"===e?(T=1,A=3,S=!1):(T=5,A=9),k){var M,E;"Squish"===e||"Dense"===e?(M=u+Math.floor(1.5)+1,E=1):f?(M=u,E=A):(M+=2.5,E=1),this.draw_background_connector&&("Squish"===e||"Dense"===e?t.fillStyle="#ccc":f?"+"===f?t.fillStyle=t.canvas.manager.get_pattern("right_strand"):"-"===f&&(t.fillStyle=t.canvas.manager.get_pattern("left_strand")):t.fillStyle="#ccc",t.fillRect(p,M,g-p,E));for(var O=0,$=k.length;O<$;O++){var D,j,P=k[O],R=Math.floor(Math.max(0,(P[0]-r-.5)*o)),I=Math.ceil(Math.min(l,Math.max((P[1]-r-.5)*o)));if(!(R>I)){if(t.fillStyle=b,t.fillRect(R,u+(A-T)/2+1,I-R,T),void 0!==_&&C>x&&!(R>y||I<_)){var N=Math.max(R,_),L=Math.min(I,y);t.fillRect(N,u+1,L-N,A),1===k.length&&"Pack"===e&&("+"===f?t.fillStyle=t.canvas.manager.get_pattern("right_strand_inv"):"-"===f&&(t.fillStyle=t.canvas.manager.get_pattern("left_strand_inv")),N+14<L&&(N+=2,L-=2),t.fillRect(N,u+1,L-N,A))}this.draw_individual_connectors&&D&&this.draw_connector(t,D,j,R,I,u),D=R,j=I}}if("Pack"===e){t.globalAlpha=1,t.fillStyle="white";var z=this.height_scaler.gen_val(i),H=Math.ceil(A*z),q=Math.round((A-H)/2);1!==z&&(t.fillRect(p,M+1,g-p,q),t.fillRect(p,M+A-q+1,g-p,q))}}else t.fillStyle=b,t.fillRect(p,u+1,g-p,A),f&&S&&("+"===f?t.fillStyle=t.canvas.manager.get_pattern("right_strand_inv"):"-"===f&&(t.fillStyle=t.canvas.manager.get_pattern("left_strand_inv")),t.fillRect(p,u+1,g-p,A));t.globalAlpha=1,d&&"Pack"===e&&c>r&&(t.fillStyle=w,0===r&&p-t.measureText(d).width<0?(t.textAlign="left",t.fillText(d,g+2,u+8,this.max_label_length),v+=t.measureText(d).width+2):(t.textAlign="right",t.fillText(d,p-2,u+8,this.max_label_length),m-=t.measureText(d).width+2))}return t.globalAlpha=1,[m,v]}});var m=function(t,e,i,n,r,a,o,s,l){p.call(this,t,e,i,n,r,a,o),this.ref_seq=s?s.data:null,this.base_color_fn=l};r.extend(m.prototype,p.prototype,{get_row_height:function(){var t,e=this.mode;return"Dense"===e?t=10:"Squish"===e?t=5:(t=10,this.prefs.show_insertions&&(t*=2)),t},_parse_cigar:function(t){var e="MIDNSHP=X",i=[[0,0]],n=i[0],a=0,o=r.map(t.match(/[0-9]+[MIDNSHP=X]/g),function(t){var r=parseInt(t.slice(0,-1),10),o=t.slice(-1);return"N"===o?0!==n[1]&&(n=[a+r,a+r],i.push(n)):-1==="ISHP".indexOf(o)&&(n[1]+=r,a+=r),[e.indexOf(o),r]});return{blocks:i,cigar:o}},draw_read:function(t,e,i,n,r,s,u,c,h,d){var f=function(t){return Math.floor(Math.max(0,(t-r-.5)*i))};t.textAlign="center";var p,g,m=[r,s],v=0,_=0,y=Math.round(i/2),b=t.canvas.manager.char_width_px,w="+"===h?this.prefs.detail_block_color:this.prefs.reverse_strand_color,C="Pack"===e,k=C?9:3,S=n+1,T=new x(t,k,i,e),A=[],M=[],E=this._parse_cigar(c);c=E.cigar,A=E.blocks;for(var O=0;O<A.length;O++){var $=A[O];o([u+$[0],u+$[1]],m)&&(p=f(u+$[0]),g=f(u+$[1]),p===g&&(g+=1),t.fillStyle=w,t.fillRect(p,S,g-p,k))}for(var D=0,j=c.length;D<j;D++){var P=c[D],R="MIDNSHP=X"[P[0]],I=P[1],N=u+v;if(p=f(N),g=f(N+I),o([N,N+I],m))switch(p===g&&(g+=1),R){case"H":case"S":case"P":break;case"M":v+=I;break;case"=":case"X":var L="";"X"===R?L=d.slice(_,_+I):this.ref_seq&&(L=this.ref_seq.slice(Math.max(0,N-r),Math.min(N-r+I,s-r)));for(var z=Math.max(N,r),H=0;H<L.length;H++)if(L&&!this.prefs.show_differences||"X"===R){var q=Math.floor(Math.max(0,(z+H-r)*i));t.fillStyle=this.base_color_fn(L[H]),C&&i>b?t.fillText(L[H],q,n+9):i>.05&&t.fillRect(q-y,S,Math.max(1,Math.round(i)),k)}"X"===R&&(_+=I),v+=I;break;case"N":t.fillStyle="#ccc",t.fillRect(p,S+(k-1)/2,g-p,1),v+=I;break;case"D":T.draw_deletion(p,S,I),v+=I;break;case"I":var F=p-y;if(o([N,N+I],m)){var B=d.slice(_,_+I);if(this.prefs.show_insertions){var V=p-(g-p)/2;if(("Pack"===e||"Auto"===this.mode)&&void 0!==d&&i>b){switch(t.fillStyle="yellow",t.fillRect(V-y,n-9,g-p,9),M[M.length]={type:"triangle",data:[F,n+4,5]},t.fillStyle="#ccc",a([N,N+I],m)){case 1003:B=B.slice(r-N);break;case 1004:B=B.slice(0,N-s);break;case 1005:break;case 1002:B=B.slice(r-N,N-s)}for(var H=0,U=B.length;H<U;H++){var q=Math.floor(Math.max(0,(N+H-r)*i));t.fillText(B[H],q-(g-p)/2,n)}}else t.fillStyle="yellow",t.fillRect(V,n+("Dense"!==this.mode?2:5),g-p,"Dense"!==e?3:9)}else("Pack"===e||"Auto"===this.mode)&&void 0!==d&&i>b&&M.push({type:"text",data:[B.length,F,n+9]})}_+=I}else v=function(t,e,i){return-1!=="M=NXD".indexOf(e)&&(t+=i),t}(v,R,I),_=function(t,e,i){return-1!=="IX".indexOf(e)&&(t+=i),t}(_,R,I)}t.fillStyle="yellow";for(var W,G,X,O=0;O<M.length;O++)W=M[O],G=W.type,X=W.data,"text"===G?(t.save(),t.font="bold "+t.font,t.fillText(X[0],X[1],X[2]),t.restore()):"triangle"===G&&l(t,X[0],X[1],X[2])},draw_element:function(t,e,i,n,r,a,o,l,u){var c=(i[0],i[1]),h=i[2],d=i[3],f=Math.floor(Math.max(-.5*o,(c-r-.5)*o)),p=Math.ceil(Math.min(u,Math.max(0,(h-r-.5)*o))),g=("Dense"===e?0:0+n)*l,m="Pack"===e?9:3;this.prefs.label_color;if(i[5]instanceof Array){var v=!0;i[4][1]>=r&&i[4][0]<=a&&i[4][2]?this.draw_read(t,e,o,g,r,a,i[4][0],i[4][2],i[4][3],i[4][4]):v=!1,i[5][1]>=r&&i[5][0]<=a&&i[5][2]?this.draw_read(t,e,o,g,r,a,i[5][0],i[5][2],i[5][3],i[5][4]):v=!1;var _=Math.ceil(Math.min(u,Math.max(-.5*o,(i[4][1]-r-.5)*o))),y=Math.floor(Math.max(-.5*o,(i[5][0]-r-.5)*o));if(v&&y>_){t.fillStyle="#ccc";var b=g+1+(m-1)/2;s(t,_,b,y,b)}}else this.draw_read(t,e,o,g,r,a,c,i[4],i[5],i[6]);return"Pack"===e&&c>=r&&"."!==d&&(t.fillStyle=this.prefs.label_color,0===r&&f-t.measureText(d).width<0?(t.textAlign="left",t.fillText(d,p+2,g+9,this.max_label_length)):(t.textAlign="right",t.fillText(d,f-2,g+9,this.max_label_length))),[0,0]}});var v=function(t,e,i,n,r,a,o){g.call(this,t,e,i,n,r,a,o),this.longest_feature_length=this.calculate_longest_feature_length(),this.draw_background_connector=!1,this.draw_individual_connectors=!0};r.extend(v.prototype,p.prototype,g.prototype,{calculate_longest_feature_length:function(){for(var t=0,e=0,i=this.data.length;e<i;e++){var n=this.data[e],r=n[1],a=n[2];t=Math.max(t,a-r)}return t},get_top_padding:function(t){var e=this.view_end-this.view_start,i=t/e;return Math.min(128,Math.ceil(this.longest_feature_length/2*i))},draw_connector:function(t,e,i,n,r,a){var o=(i+n)/2,s=n-o;Math.PI;s>0&&(t.beginPath(),t.arc(o,a,n-o,Math.PI,0),t.stroke())}});var _=function(t,e){Array.isArray(t)?this.rgb=t:6==t.length?this.rgb=t.match(/.{2}/g).map(function(t){return parseInt(t,16)}):7==t.length?this.rgb=t.substring(1,7).match(/.{2}/g).map(function(t){return parseInt(t,16)}):this.rgb=t.split("").map(function(t){return parseInt(t+t,16)}),this.alpha="number"==typeof e?e:1};_.prototype={eval:function(){return this},toCSS:function(){return this.alpha<1?"rgba("+this.rgb.map(function(t){return Math.round(t)}).concat(this.alpha).join(", ")+")":"#"+this.rgb.map(function(t){return t=Math.round(t),t=(t>255?255:t<0?0:t).toString(16),1===t.length?"0"+t:t}).join("")},toHSL:function(){var t,e,i=this.rgb[0]/255,n=this.rgb[1]/255,r=this.rgb[2]/255,a=this.alpha,o=Math.max(i,n,r),s=Math.min(i,n,r),l=(o+s)/2,u=o-s;if(o===s)t=e=0;else{switch(e=l>.5?u/(2-o-s):u/(o+s),o){case i:t=(n-r)/u+(n<r?6:0);break;case n:t=(r-i)/u+2;break;case r:t=(i-n)/u+4}t/=6}return{h:360*t,s:e,l:l,a:a}},toARGB:function(){return"#"+[Math.round(255*this.alpha)].concat(this.rgb).map(function(t){return t=Math.round(t),t=(t>255?255:t<0?0:t).toString(16),1===t.length?"0"+t:t}).join("")},mix:function(t,e){var i=this,n=e,r=2*n-1,a=i.toHSL().a-t.toHSL().a,o=((r*a==-1?r:(r+a)/(1+r*a))+1)/2,s=1-o,l=[i.rgb[0]*o+t.rgb[0]*s,i.rgb[1]*o+t.rgb[1]*s,i.rgb[2]*o+t.rgb[2]*s],u=i.alpha*n+t.alpha*(1-n);return new _(l,u)}};var y=function(t,e,i,n){this.start_color=new _(t),this.end_color=new _(e),this.start_value=i,this.end_value=n,this.value_range=n-i};y.prototype.map_value=function(t){return t=Math.max(t,this.start_value),t=Math.min(t,this.end_value),t=(t-this.start_value)/this.value_range,this.start_color.mix(this.end_color,1-t).toCSS()};var b=function(t,e,i,n,r){this.positive_ramp=new y(e,i,0,r),this.negative_ramp=new y(e,t,0,-n),this.start_value=n,this.end_value=r};b.prototype.map_value=function(t){return t=Math.max(t,this.start_value),t=Math.min(t,this.end_value),t>=0?this.positive_ramp.map_value(t):this.negative_ramp.map_value(-t)};var w=function(t,e,i,n,r){h.call(this,t,e,i,n,r);var a,o;if(void 0===this.prefs.min_value){var s=1/0;for(a=0,o=this.data.length;a<o;a++)s=Math.min(s,this.data[a][6]);this.prefs.min_value=s}if(void 0===this.prefs.max_value){var l=-1/0;for(a=0,o=this.data.length;a<o;a++)l=Math.max(l,this.data[a][6]);this.prefs.max_value=l}};w.prototype.default_prefs={min_value:void 0,max_value:void 0,mode:"Heatmap",pos_color:"#FF8C00",neg_color:"#4169E1"},w.prototype.draw=function(t,e,i,n){var r,a,o,s,l,u,c=this.prefs.min_value,h=this.prefs.max_value,d=this.view_start,f=(this.mode,this.data),p=1/Math.sqrt(2),g=new b(this.prefs.neg_color,"#FFFFFF",this.prefs.pos_color,c,h),m=function(t){return(t-d)*n};t.save(),t.rotate(-45*Math.PI/180),t.scale(p,p);for(var v=0,_=f.length;v<_;v++)r=f[v],a=m(r[1]),o=m(r[2]),s=m(r[4]),l=m(r[5]),u=r[6],t.fillStyle=g.map_value(u),t.fillRect(a,s,o-a,l-s);t.restore()};var x=function(t,e,i,n){this.ctx=t,this.row_height=e,this.px_per_base=i,this.draw_details=("Pack"===n||"Auto"===n)&&i>=t.canvas.manager.char_width_px,this.delete_details_thickness=.2};r.extend(x.prototype,{draw_deletion:function(t,e,i){this.ctx.fillStyle="black";var n=(this.draw_details?this.delete_details_thickness:1)*this.row_height;e+=.5*(this.row_height-n),this.ctx.fillRect(t,e,i*this.px_per_base,n)}});var C=function(t,e,i,n,r,a){h.call(this,t,e,i,n,r),this.base_color_fn=a,this.divider_height=1};r.extend(C.prototype,h.prototype,{get_row_height:function(){var t=this.mode;return"Dense"===t?10:"Squish"===t?5:10},get_required_height:function(t){var e=this.prefs.summary_height;return t>1&&this.prefs.show_sample_data&&(e+=this.divider_height+t*this.get_row_height()),e},draw:function(t,e,i,n){t.save();var a,o,s,l,u,c,h,d,f,p,g,m=function(t,e){var i=t.length,n=e.length,r=0,a=1,o=null;return"-"===e?(o="deletion",a=t.length):0===t.indexOf(e)&&i>n?(o="deletion",a=i-n,r=n):0===e.indexOf(t)&&i<n&&(o="insertion",a=n-i,r=n),null!==o?{type:o,start:r,len:a}:{}},v=Math.max(1,Math.floor(n)),_=this.data.length?this.data[0][7].split(",").length:0,y="Squish"===this.mode?5:10,b=n<.1?y:"Squish"===this.mode?3:9,w=!0,C=new x(t,y,n,this.mode);1===_&&(y=b=n<t.canvas.manager.char_width_px?this.prefs.summary_height:y,C.row_height=y,w=!1),this.prefs.show_sample_data&&w&&(t.fillStyle="#F3F3F3",t.globalAlpha=1,t.fillRect(0,this.prefs.summary_height-this.divider_height,e,this.divider_height)),t.textAlign="center";for(var k=0;k<this.data.length;k++)if(a=this.data[k],o=a[1],s=a[3],l=[a[4].split(",")],u=a[7].split(","),c=a.slice(8),l=r.map(r.flatten(l),function(t){var e={type:"snp",value:t,start:0},i=m(s,t);return r.extend(e,i)}),!(o<this.view_start||o>this.view_end)){if(w)for(t.fillStyle="#999999",t.globalAlpha=1,g=0;g<l.length;g++)for(d=this.get_start_draw_pos(o+l[g].start,n),t.fillRect(d,0,v,this.prefs.summary_height),f=this.prefs.summary_height,g=0;g<l.length;g++){t.fillStyle="deletion"===l[g].type?"black":this.base_color_fn(l[g].value);var S=c/u.length,T=Math.ceil(this.prefs.summary_height*S);t.fillRect(d,f-T,v,T),f-=T}if(this.prefs.show_sample_data)for(f=w?this.prefs.summary_height+this.divider_height:0,g=0;g<u.length;g++,f+=y)if(p=u[g]?u[g].split(/\/|\|/):["0","0"],h=null,p[0]===p[1]?"."===p[0]||"0"!==p[0]&&(h=l[parseInt(p[0],10)-1],t.globalAlpha=1):(h="0"!==p[0]?p[0]:p[1],h=l[parseInt(h,10)-1],t.globalAlpha=.5),h)if(d=this.get_start_draw_pos(o+h.start,n),"snp"===h.type){var A=h.value;t.fillStyle=this.base_color_fn(A),C.draw_details?t.fillText(A,this.get_draw_pos(o,n),f+y):t.fillRect(d,f+1,v,b)}else"deletion"===h.type&&C.draw_deletion(d,f+1,h.len)}t.restore()}}),e.default={Scaler:u,LinePainter:d,LinkedFeaturePainter:g,ReadPainter:m,ArcLinkedFeaturePainter:v,DiagonalHeatmapPainter:w,VariantPainter:C}},function(t,e,i){"use strict";(function(t){Object.defineProperty(e,"__esModule",{value:!0});var n=i(3),r=function(t){return t&&t.__esModule?t:{default:t}}(n),a=i(1),o=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var i in t)Object.prototype.hasOwnProperty.call(t,i)&&(e[i]=t[i]);return e.default=t,e}(a),s=o.extend,l=function(t){this.manager=null,this.name=t.name,this.index=t.index,this.tool_id=t.tool_id,this.tool_exp_name=t.tool_exp_name};s(l.prototype,{to_dict:function(){return{name:this.name,index:this.index,tool_id:this.tool_id,tool_exp_name:this.tool_exp_name}}});var u=function(e,i,n){return t("<a/>").attr("href","javascript:void(0);").attr("title",e).addClass("icon-button").addClass(i).tooltip().click(n)},c=function(e){l.call(this,e),this.low="low"in e?e.low:-Number.MAX_VALUE,this.high="high"in e?e.high:Number.MAX_VALUE,this.min="min"in e?e.min:Number.MAX_VALUE,this.max="max"in e?e.max:-Number.MAX_VALUE,this.container=null,this.slider=null,this.slider_label=null;var i=this;i.parent_div=t("<div/>").addClass("filter-row slider-row");var n=t("<div/>").addClass("elt-label").appendTo(i.parent_div),r=(t("<span/>").addClass("slider-name").text(i.name+"  ").appendTo(n),t("<span/>").text(this.low+"-"+this.high)),a=t("<span/>").addClass("slider-value").appendTo(n).append("[").append(r).append("]");i.values_span=r;var o=t("<div/>").addClass("slider").appendTo(i.parent_div);i.control_element=t("<div/>").attr("id",i.name+"-filter-control").appendTo(o),i.control_element.slider({range:!0,min:this.min,max:this.max,step:this.get_slider_step(this.min,this.max),values:[this.low,this.high],slide:function(t,e){i.slide(t,e)},change:function(t,e){i.control_element.slider("option","slide").call(i.control_element,t,e)}}),i.slider=i.control_element,i.slider_label=r,function(e,i,n){e.click(function(){var e=i.text(),r=parseFloat(n.slider("option","max")),a=r<=1?4:r<=1e6?r.toString().length:6,o=!1,s=t(this).parents(".slider-row");s.addClass("input"),n.slider("option","values")&&(a=2*a+1,o=!0),i.text(""),t("<input type='text'/>").attr("size",a).attr("maxlength",a).attr("value",e).appendTo(i).focus().select().click(function(t){t.stopPropagation()}).blur(function(){t(this).remove(),i.text(e),s.removeClass("input")}).keyup(function(e){if(27===e.keyCode)t(this).trigger("blur");else if(13===e.keyCode){var i=n.slider("option","min"),r=n.slider("option","max"),a=function(t){return isNaN(t)||t>r||t<i},l=t(this).val();if(o){if(l=l.split("-"),l=[parseFloat(l[0]),parseFloat(l[1])],a(l[0])||a(l[1]))return alert("Parameter value must be in the range ["+i+"-"+r+"]"),t(this)}else if(l=parseFloat(l),a(l))return alert("Parameter value must be in the range ["+i+"-"+r+"]"),t(this);n.slider(o?"values":"value",l),s.removeClass("input")}})})}(a,r,i.control_element);var s=t("<div/>").addClass("display-controls").appendTo(i.parent_div);this.transparency_icon=u("Use filter for data transparency","layer-transparent",function(){i.manager.alpha_filter!==i?(i.manager.alpha_filter=i,i.manager.parent_div.find(".layer-transparent").removeClass("active").hide(),i.transparency_icon.addClass("active").show()):(i.manager.alpha_filter=null,i.transparency_icon.removeClass("active")),i.manager.track.request_draw({force:!0,clear_after:!0})}).appendTo(s).hide(),this.height_icon=u("Use filter for data height","arrow-resize-090",function(){i.manager.height_filter!==i?(i.manager.height_filter=i,i.manager.parent_div.find(".arrow-resize-090").removeClass("active").hide(),i.height_icon.addClass("active").show()):(i.manager.height_filter=null,i.height_icon.removeClass("active")),i.manager.track.request_draw({force:!0,clear_after:!0})}).appendTo(s).hide(),i.parent_div.hover(function(){i.transparency_icon.show(),i.height_icon.show()},function(){i.manager.alpha_filter!==i&&i.transparency_icon.hide(),i.manager.height_filter!==i&&i.height_icon.hide()}),t("<div style='clear: both;'/>").appendTo(i.parent_div)};s(c.prototype,{to_dict:function(){var t=l.prototype.to_dict.call(this);return s(t,{type:"number",min:this.min,max:this.max,low:this.low,high:this.high})},copy:function(){return new c({name:this.name,index:this.index,tool_id:this.tool_id,tool_exp_name:this.tool_exp_name})},get_slider_step:function(t,e){return e-t<=2?.01:1},slide:function(t,e){var i=e.values;this.values_span.text(i[0]+"-"+i[1]),this.low=i[0],this.high=i[1];var n=this;setTimeout(function(){i[0]===n.low&&i[1]===n.high&&n.manager.track.request_draw({force:!0,clear_after:!0})},25)},applies_to:function(t){return t.length>this.index},_keep_val:function(t){return isNaN(t)||t>=this.low&&t<=this.high},keep:function(t){if(!this.applies_to(t))return!0;var e=t[this.index];if(e instanceof Array){for(var i=!0,n=0;n<e.length;n++)if(!this._keep_val(e[n])){i=!1;break}return i}return this._keep_val(t[this.index])},update_attrs:function(t){var e=!1;if(!this.applies_to(t))return e;var i=t[this.index];i instanceof Array||(i=[i]);for(var n=0;n<i.length;n++){var r=i[n];r<this.min&&(this.min=Math.floor(r),e=!0),r>this.max&&(this.max=Math.ceil(r),e=!0)}return e},update_ui_elt:function(){this.min<this.max?this.parent_div.show():this.parent_div.hide();var t=this.slider.slider("option","min"),e=this.slider.slider("option","max");(this.min<t||this.max>e)&&(this.slider.slider("option","min",this.min),this.slider.slider("option","max",this.max),this.slider.slider("option","step",this.get_slider_step(this.min,this.max)),this.slider.slider("option","values",[this.min,this.max]))}});var h=function(e,i){if(this.track=e,this.alpha_filter=null,this.height_filter=null,this.filters=[],this.parent_div=t("<div/>").addClass("filters").hide(),this.parent_div.bind("drag",function(t){t.stopPropagation()}).click(function(t){t.stopPropagation()}).bind("dblclick",function(t){t.stopPropagation()}).bind("keydown",function(t){t.stopPropagation()}),i&&"filters"in i){for(var n,r=("alpha_filter"in i?i.alpha_filter:null),a=("height_filter"in i?i.height_filter:null),o=i.filters,s=0;s<o.length;s++)"number"===o[s].type?(n=new c(o[s]),this.add_filter(n),n.name===r&&(this.alpha_filter=n,n.transparency_icon.addClass("active").show()),n.name===a&&(this.height_filter=n,n.height_icon.addClass("active").show())):console.log("ERROR: unsupported filter: ",name,type);"visible"in i&&i.visible&&this.parent_div.show()}if(0!==this.filters.length){var l=t("<div/>").addClass("param-row").appendTo(this.parent_div),u=this;t("<input type='submit'/>").attr("value","Run on complete dataset").appendTo(l).click(function(){u.run_on_dataset()})}};s(h.prototype,{show:function(){this.parent_div.show()},hide:function(){this.parent_div.hide()},toggle:function(){this.parent_div.toggle()},visible:function(){return this.parent_div.is(":visible")},to_dict:function(){for(var t,e={},i=[],n=0;n<this.filters.length;n++)t=this.filters[n],i.push(t.to_dict());return e.filters=i,e.alpha_filter=this.alpha_filter?this.alpha_filter.name:null,e.height_filter=this.height_filter?this.height_filter.name:null,e.visible=this.parent_div.is(":visible"),e},copy:function(t){for(var e=new h(t),i=0;i<this.filters.length;i++)e.add_filter(this.filters[i].copy());return e},add_filter:function(t){t.manager=this,this.parent_div.append(t.parent_div),this.filters.push(t)},remove_all:function(){this.filters=[],this.parent_div.children().remove()},init_filters:function(){for(var t=0;t<this.filters.length;t++){this.filters[t].update_ui_elt()}},clear_filters:function(){for(var t=0;t<this.filters.length;t++){var e=this.filters[t];e.slider.slider("option","values",[e.min,e.max])}this.alpha_filter=null,this.height_filter=null,this.parent_div.find(".icon-button").hide()},run_on_dataset:function(){for(var e,i,n=(function(t,e,i){return e in t||(t[e]=i),t[e]}),a={},o=0;o<this.filters.length;o++)e=this.filters[o],e.tool_id&&(e.min!==e.low&&(i=n(a,e.tool_id,[]),i[i.length]=e.tool_exp_name+" >= "+e.low),e.max!==e.high&&(i=n(a,e.tool_id,[]),i[i.length]=e.tool_exp_name+" <= "+e.high));var s=[];for(var l in a)s[s.length]=[l,a[l]];!function e(i,n){var a=n[0],o=a[0],s=a[1],l="("+s.join(") and (")+")",u={cond:l,input:i,target_dataset_id:i,tool_id:o};n=n.slice(1),t.getJSON(run_tool_url,u,function(t){t.error?Galaxy.modal.show({title:(0,r.default)("Filter Dataset"),body:"Error running tool "+o,buttons:{Close:Galaxy.modal.hide()}}):0===n.length?Galaxy.modal.show({title:(0,r.default)("Filtering Dataset"),body:"Filter(s) are running on the complete dataset. Outputs are in dataset's history.",buttons:{Close:Galaxy.modal.hide()}}):e(t.dataset_id,n)})}(this.track.dataset_id,s)}}),e.default={FiltersManager:h,NumberFilter:c}}).call(e,i(0))},function(t,e,i){"use strict";(function(t,n,r,a){function o(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var s=i(5),l=o(s),u=i(6),c=(o(u),i(69)),h=o(c),d=i(166),f=o(d),p=i(167),g=o(p),m=i(168),v=o(m),_=t.View.extend({initialize:function(t,e){this.app=t,this.inputs=e.inputs,this.parameters=new v.default,this.setElement(n("<div/>")),this.render()},render:function(){var t=this;this.$el.empty(),r.each(this.inputs,function(e){t.add(e)})},add:function(t){var e=a.extend(!0,{},t);switch(e.id=t.id=l.default.uid(),this.app.input_list[e.id]=e,e.type){case"conditional":this._addConditional(e);break;case"repeat":this._addRepeat(e);break;case"section":this._addSection(e);break;default:this._addRow(e)}},_addConditional:function(t){var e=this;t.test_param.id=t.id,this.app.model.get("sustain_conditionals")&&(t.test_param.disabled=!0);var i=this._addRow(t.test_param);i.model&&i.model.set("onchange",function(i){var n=e.app.data.matchCase(t,i);for(var r in t.cases){var a=t.cases[r],o=e.$("#"+t.id+"-section-"+r),s=!1;for(var l in a.inputs)if(!a.inputs[l].hidden){s=!0;break}r==n&&s?o.fadeIn("fast"):o.hide()}e.app.trigger("change")});for(var n in t.cases){var r=new _(this.app,{inputs:t.cases[n].inputs});this._append(r.$el.addClass("ui-form-section"),t.id+"-section-"+n)}i.trigger("change")},_addRepeat:function(t){function e(e){var r=t.id+"-section-"+n++,o=new _(i.app,{inputs:e});a.add({id:r,$el:o.$el,ondel:function(){a.del(r),i.app.trigger("change")}})}for(var i=this,n=0,a=new f.default.View({title:t.title||"Repeat",min:t.min,max:t.max,onnew:function(){e(t.inputs),i.app.trigger("change")}}),o=r.size(t.cache),s=0;s<Math.max(Math.max(o,t.min||0),t.default||0);s++)e(s<o?t.cache[s]:t.inputs);this.app.model.get("sustain_repeats")&&a.hideOptions();var l=new g.default(this.app,{label:t.title||t.name,help:t.help,field:a});this._append(l.$el,t.id)},_addSection:function(t){var e=new h.default.View({title:t.title||t.name,cls:"ui-portlet-section",collapsible:!0,collapsible_button:!0,collapsed:!t.expanded});e.append(new _(this.app,{inputs:t.inputs}).$el),e.append(n("<div/>").addClass("ui-form-info").html(t.help)),this.app.on("expand",function(t){e.$("#"+t).length>0&&e.expand()}),this._append(e.$el,t.id)},_addRow:function(t){var e=this,i=t.id;t.onchange=t.onchange||function(){e.app.trigger("change",i)};var n=this.parameters.create(t);this.app.field_list[i]=n;var r=new g.default(this.app,{name:t.name,label:t.hide_label?"":t.label||t.name,value:t.value,text_value:t.text_value,collapsible_value:t.collapsible_value,collapsible_preview:t.collapsible_preview,help:t.help,argument:t.argument,disabled:t.disabled,color:t.color,style:t.style,backdrop:t.backdrop,hidden:t.hidden,fixed:t.fixed,field:n});return this.app.element_list[i]=r,this._append(r.$el,t.id),n},_append:function(t,e){this.$el.append(t.addClass("section-row").attr("id",e))}});e.default={View:_}}).call(e,i(2),i(0),i(1),i(0))},function(t,e,i){"use strict";(function(t,n,r){function a(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0}),e.View=void 0;var o=i(3),s=a(o),l=i(5),u=a(l),c=i(69),h=a(c),d=i(6),f=a(d),p=e.View=t.View.extend({initialize:function(t){this.list={},this.options=u.default.merge(t,{title:(0,s.default)("Repeat"),empty_text:"Not available.",max:null,min:null}),this.button_new=new f.default.ButtonIcon({icon:"fa-plus",title:"Insert "+this.options.title,tooltip:"Add new "+this.options.title+" block",cls:"ui-button-icon ui-clear-float form-repeat-add",onclick:function(){t.onnew&&t.onnew()}}),this.setElement(n("<div/>").append(this.$list=n("<div/>")).append(n("<div/>").append(this.button_new.$el)))},size:function(){return r.size(this.list)},add:function(t){if(!t.id||this.list[t.id])return void Galaxy.emit.debug("form-repeat::add()","Duplicate or invalid repeat block id.");var e=new f.default.ButtonIcon({icon:"fa-trash-o",tooltip:(0,s.default)("Delete this repeat block"),cls:"ui-button-icon-plain form-repeat-delete",onclick:function(){t.ondel&&t.ondel()}}),i=new h.default.View({id:t.id,title:(0,s.default)("placeholder"),cls:t.cls||"ui-portlet-repeat",operations:{button_delete:e}});i.append(t.$el),i.$el.addClass("section-row").hide(),this.list[t.id]=i,this.$list.append(i.$el.fadeIn("fast")),this.options.max>0&&this.size()>=this.options.max&&this.button_new.disable(),this._refresh()},del:function(t){if(!this.list[t])return void Galaxy.emit.debug("form-repeat::del()","Invalid repeat block id.");this.$list.find("#"+t).remove(),delete this.list[t],this.button_new.enable(),this._refresh()},delAll:function(){for(var t in this.list)this.del(t)},hideOptions:function(){this.button_new.$el.hide(),r.each(this.list,function(t){t.hideOperation("button_delete")}),r.isEmpty(this.list)&&this.$el.append(n("<div/>").addClass("ui-form-info").html(this.options.empty_text))},_refresh:function(){var t=0;for(var e in this.list){var i=this.list[e];i.title(++t+": "+this.options.title),i[this.size()>this.options.min?"showOperation":"hideOperation"]("button_delete")}}});e.default={View:p}}).call(e,i(2),i(0),i(1))},function(t,e,i){"use strict";(function(t,i,n){Object.defineProperty(e,"__esModule",{value:!0}),e.default=t.View.extend({initialize:function(e,i){this.app=e,this.app_options=e.model?e.model.attributes:{},this.field=i&&i.field||new t.View,this.model=i&&i.model||new t.Model({text_enable:this.app_options.text_enable||"Enable",text_disable:this.app_options.text_disable||"Disable",cls_enable:this.app_options.cls_enable||"fa fa-caret-square-o-down",cls_disable:this.app_options.cls_disable||"fa fa-caret-square-o-up",always_refresh:this.app_options.always_refresh}).set(i),this.setElement(this._template()),this.$field=this.$(".ui-form-field"),this.$info=this.$(".ui-form-info"),this.$preview=this.$(".ui-form-preview"),this.$collapsible=this.$(".ui-form-collapsible"),this.$collapsible_text=this.$(".ui-form-collapsible-text"),this.$collapsible_icon=this.$(".ui-form-collapsible-icon"),this.$title=this.$(".ui-form-title"),this.$title_text=this.$(".ui-form-title-text"),this.$error_text=this.$(".ui-form-error-text"),this.$error=this.$(".ui-form-error"),this.$backdrop=this.$(".ui-form-backdrop"),this.$field.prepend(this.field.$el);var n=this.model.get("collapsible_value");this.field.collapsed=void 0!==n&&JSON.stringify(this.model.get("value"))==JSON.stringify(n),this.listenTo(this.model,"change",this.render,this),this.render();var r=this;this.$collapsible.on("click",function(){r.field.collapsed=!r.field.collapsed,e.trigger&&e.trigger("change"),r.render()}),this.field.model&&!this.model.get("always_refresh")&&this.listenTo(this.field.model,"change:value",function(){r.reset()})},backdrop:function(){this.model.set("backdrop",!0)},error:function(t){this.model.set("error_text",t)},reset:function(){!this.model.get("fixed")&&this.model.set("error_text",null)},render:function(){i(".tooltip").hide();var t=this.model.get("help",""),e=this.model.get("argument");e&&-1==t.indexOf("("+e+")")&&(t+=" ("+e+")"),this.$info.html(t),this.$el[this.model.get("hidden")?"hide":"show"](),this.$preview[this.field.collapsed&&this.model.get("collapsible_preview")||this.model.get("disabled")?"show":"hide"]().html(n.escape(this.model.get("text_value")));var r=this.model.get("error_text");if(this.$error[r?"show":"hide"](),this.$el[r?"addClass":"removeClass"]("ui-error"),this.$error_text.html(r),this.$backdrop[this.model.get("backdrop")?"show":"hide"](),this.field.collapsed||this.model.get("disabled")?this.$field.hide():this.$field.show(),this.field.model&&this.field.model.set({color:this.model.get("color"),style:this.model.get("style")}),this.model.get("disabled")||void 0===this.model.get("collapsible_value"))this.$title_text.show().text(this.model.get("label")),this.$collapsible.hide();else{var a=this.field.collapsed?"enable":"disable";this.$title_text.hide(),this.$collapsible.show(),this.$collapsible_text.text(this.model.get("label")),this.$collapsible_icon.removeClass().addClass("icon").addClass(this.model.get("cls_"+a)).attr("data-original-title",this.model.get("text_"+a)).tooltip({placement:"bottom"})}},_template:function(){return i("<div/>").addClass("ui-form-element").append(i("<div/>").addClass("ui-form-error ui-error").append(i("<span/>").addClass("fa fa-arrow-down")).append(i("<span/>").addClass("ui-form-error-text"))).append(i("<div/>").addClass("ui-form-title").append(i("<div/>").addClass("ui-form-collapsible").append(i("<i/>").addClass("ui-form-collapsible-icon")).append(i("<span/>").addClass("ui-form-collapsible-text"))).append(i("<span/>").addClass("ui-form-title-text"))).append(i("<div/>").addClass("ui-form-field").append(i("<span/>").addClass("ui-form-info")).append(i("<div/>").addClass("ui-form-backdrop"))).append(i("<div/>").addClass("ui-form-preview"))}})}).call(e,i(2),i(0),i(1))},function(t,e,i){"use strict";(function(t,n,r){function a(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var o=i(5),s=a(o),l=i(6),u=a(l),c=i(169),h=a(c),d=i(170),f=a(d),p=i(171),g=a(p),m=i(172),v=a(m),_=i(174),y=a(_);e.default=t.Model.extend({types:{text:"_fieldText",password:"_fieldText",select:"_fieldSelect",data_column:"_fieldSelect",genomebuild:"_fieldSelect",data:"_fieldData",data_collection:"_fieldData",integer:"_fieldSlider",float:"_fieldSlider",boolean:"_fieldBoolean",drill_down:"_fieldDrilldown",color:"_fieldColor",hidden:"_fieldHidden",hidden_data:"_fieldHidden",baseurl:"_fieldHidden",library_data:"_fieldLibrary",ftpfile:"_fieldFtp",upload:"_fieldUpload",genomespacefile:"_fieldGenomeSpace"},create:function(t){var e=this.types[t.type],i="function"==typeof this[e]?this[e].call(this,t):null;return i||(i=t.options?this._fieldSelect(t):this._fieldText(t),Galaxy.emit.debug("form-parameters::_addRow()","Auto matched field type ("+t.type+").")),void 0===t.value&&(t.value=null),i.value(t.value),i},_fieldData:function(t){return new h.default.View({id:"field-"+t.id,extensions:t.extensions,optional:t.optional,multiple:t.multiple,type:t.type,flavor:t.flavor,data:t.options,onchange:t.onchange})},_fieldSelect:function(t){if(t.is_workflow)return this._fieldText(t);"data_column"==t.type&&(t.error_text="Missing columns in referenced dataset.");var e=t.data;e||(e=[],n.each(t.options,function(t){e.push({label:t[0],value:t[1]})}));var i=u.default.Select;switch(t.display){case"checkboxes":i=u.default.Checkbox;break;case"radio":i=u.default.Radio;break;case"radiobutton":i=u.default.RadioButton}return new i.View({id:"field-"+t.id,data:e,error_text:t.error_text||"No options available",readonly:t.readonly,multiple:t.multiple,optional:t.optional,onchange:t.onchange,individual:t.individual,searchable:"workflow"!==t.flavor})},_fieldDrilldown:function(t){return t.is_workflow?this._fieldText(t):new u.default.Drilldown.View({id:"field-"+t.id,data:t.options,display:t.display,optional:t.optional,onchange:t.onchange})},_fieldText:function(t){if(t.options&&t.data)if(t.area=t.multiple,s.default.isEmpty(t.value))t.value=null;else if(r.isArray(t.value)){var e="";for(var i in t.value){if(e+=String(t.value[i]),!t.multiple)break;e+="\n"}t.value=e}return new u.default.Input({id:"field-"+t.id,type:t.type,area:t.area,readonly:t.readonly,placeholder:t.placeholder,datalist:t.datalist,onchange:t.onchange})},_fieldSlider:function(t){return new u.default.Slider.View({id:"field-"+t.id,precise:"float"==t.type,is_workflow:t.is_workflow,min:t.min,max:t.max,onchange:t.onchange})},_fieldHidden:function(t){return new u.default.Hidden({id:"field-"+t.id,info:t.info})},_fieldBoolean:function(t){return new u.default.RadioButton.View({id:"field-"+t.id,data:[{label:"Yes",value:"true"},{label:"No",value:"false"}],onchange:t.onchange})},_fieldColor:function(t){return new y.default({id:"field-"+t.id,onchange:t.onchange})},_fieldLibrary:function(t){return new f.default.View({id:"field-"+t.id,optional:t.optional,multiple:t.multiple,onchange:t.onchange})},_fieldFtp:function(t){return new g.default.View({id:"field-"+t.id,optional:t.optional,multiple:t.multiple,onchange:t.onchange})},_fieldGenomeSpace:function(t){var e=this;return new v.default.View({id:"field-"+t.id,onchange:function(){e.app.trigger("change")}})},_fieldUpload:function(t){return new u.default.Upload({id:"field-"+t.id,onchange:t.onchange})}})}).call(e,i(2),i(1),i(0))},function(t,e,i){"use strict";(function(t,n,r){function a(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var o=i(3),s=a(o),l=i(5),u=a(l),c=i(6),h=a(c),d=i(114),f=a(d),p={DISABLED:"disabled",ENABLED:"enabled",LINKED:"linked"},g={data:[{src:"hda",icon:"fa-file-o",tooltip:(0,s.default)("Single dataset"),multiple:!1,batch:p.DISABLED},{src:"hda",icon:"fa-files-o",tooltip:(0,s.default)("Multiple datasets"),multiple:!0,batch:p.LINKED},{src:"hdca",icon:"fa-folder-o",tooltip:(0,s.default)("Dataset collection"),multiple:!1,batch:p.LINKED}],data_multiple:[{src:"hda",icon:"fa-files-o",tooltip:(0,s.default)("Multiple datasets"),multiple:!0,batch:p.DISABLED},{src:"hdca",icon:"fa-folder-o",tooltip:(0,s.default)("Dataset collections"),multiple:!0,batch:p.DISABLED}],data_collection:[{src:"hdca",icon:"fa-folder-o",tooltip:(0,s.default)("Dataset collection"),multiple:!1,batch:p.DISABLED}],workflow_data:[{src:"hda",icon:"fa-file-o",tooltip:(0,s.default)("Single dataset"),multiple:!1,batch:p.DISABLED}],workflow_data_multiple:[{src:"hda",icon:"fa-files-o",tooltip:(0,s.default)("Multiple datasets"),multiple:!0,batch:p.DISABLED}],workflow_data_collection:[{src:"hdca",icon:"fa-folder-o",tooltip:(0,s.default)("Dataset collection"),multiple:!1,batch:p.DISABLED}],module_data:[{src:"hda",icon:"fa-file-o",tooltip:(0,s.default)("Single dataset"),multiple:!1,batch:p.DISABLED},{src:"hda",icon:"fa-files-o",tooltip:(0,s.default)("Multiple datasets"),multiple:!0,batch:p.ENABLED}],module_data_collection:[{src:"hdca",icon:"fa-folder-o",tooltip:(0,s.default)("Dataset collection"),multiple:!1,batch:p.DISABLED},{src:"hdca",icon:"fa-folder",tooltip:(0,s.default)("Multiple collections"),multiple:!0,batch:p.ENABLED}]},m=t.View.extend({initialize:function(e){var i=this;this.model=e&&e.model||new t.Model({src_labels:{hda:"dataset",hdca:"dataset collection"},pagelimit:100,statustimer:1e3}).set(e),this.setElement(n("<div/>").addClass("ui-select-content")),this.button_product=new h.default.RadioButton.View({value:"false",data:[{icon:"fa fa-chain",value:"false",tooltip:"Linked inputs will be run in matched order with other datasets e.g. use this for matching forward and reverse reads."},{icon:"fa fa-chain-broken",value:"true",tooltip:"Unlinked dataset inputs will be run against *all* other inputs."}]});var r=n("<div/>").addClass("ui-form-info").append(n("<i/>").addClass("fa fa-sitemap")).append(n("<span/>").html("This is a batch mode input field. Separate jobs will be triggered for each dataset selection."));this.$batch={linked:r.clone(),enabled:r.clone().append(n("<div/>").append(n("<div/>").addClass("ui-form-title").html("Batch options:")).append(this.button_product.$el)).append(n("<div/>").css("clear","both"))},this.$el.on("dragenter",function(t){this.lastenter=t.target,i.$el.addClass("ui-dragover")}).on("dragover",function(t){t.preventDefault()}).on("dragleave",function(t){this.lastenter===t.target&&i.$el.removeClass("ui-dragover")}).on("drop",function(t){i._handleDrop(t)}),this.history={},this.listenTo(this.model,"change:data",this._changeData,this),this.listenTo(this.model,"change:wait",this._changeWait,this),this.listenTo(this.model,"change:current",this._changeCurrent,this),this.listenTo(this.model,"change:value",this._changeValue,this),this.listenTo(this.model,"change:type change:optional change:multiple change:extensions",this._changeType,this),this.render(),this.on("change",function(){e.onchange&&e.onchange(i.value())})},render:function(){this._changeType(),this._changeValue(),this._changeWait()},wait:function(){this.model.set("wait",!0)},unwait:function(){this.model.set("wait",!1)},update:function(t){this.model.set("data",t)},value:function(t){void 0!==t&&this.model.set("value",t);var e=this.model.get("current");if(this.config[e]){var i=this.fields[e].value();if(null!==i&&(i=n.isArray(i)?i:[i],i.length>0)){var r=this._batch({values:[]});for(var a in i){var o=this.history[i[a]+"_"+this.config[e].src];if(!o)return Galaxy.emit.debug("ui-select-content::value()","Requested details not found for '"+i[a]+"'."),null;r.values.push(o)}return r.values.sort(function(t,e){return t.hid-e.hid}),r}}else Galaxy.emit.debug("ui-select-content::value()","Invalid value/source '"+t+"'.");return null},_changeCurrent:function(){var t=this;r.each(this.fields,function(e,i){t.model.get("current")==i?(e.$el.show(),r.each(t.$batch,function(e,n){e[t.config[i].batch==n?"show":"hide"]()}),t.button_type.value(i)):e.$el.hide()})},_changeType:function(){var t=this,e=(this.model.get("flavor")?this.model.get("flavor")+"_":"")+String(this.model.get("type"))+(this.model.get("multiple")?"_multiple":"");g[e]?this.config=g[e]:(this.config=g.data,Galaxy.emit.debug("ui-select-content::_changeType()","Invalid configuration/type id '"+e+"'."));var i=t.model.get("data"),n=u.default.textify(this.model.get("extensions")),a=this.model.get("src_labels");this.fields=[],this.button_data=[],r.each(this.config,function(e,r){t.button_data.push({value:r,icon:e.icon,tooltip:e.tooltip}),t.fields.push(new f.default.View({optional:t.model.get("optional"),multiple:e.multiple,searchable:!e.multiple||i&&i[e.src]&&i[e.src].length>t.model.get("pagelimit"),individual:!0,error_text:"No "+(n?n+" ":"")+(a[e.src]||"content")+" available.",onchange:function(){t.trigger("change")}}))}),this.button_type=new h.default.RadioButton.View({value:this.model.get("current"),data:this.button_data,onchange:function(e){t.model.set("current",e),t.trigger("change")}}),this.$el.empty();var o=0;this.fields.length>1&&(this.$el.append(this.button_type.$el),o=Math.max(0,36*this.fields.length)+"px"),r.each(this.fields,function(e){t.$el.append(e.$el.css({"margin-left":o}))}),r.each(this.$batch,function(e,i){t.$el.append(e.css({"margin-left":o}))}),this.model.set("current",0),this._changeCurrent(),this._changeData()},_changeWait:function(){var t=this;r.each(this.fields,function(e){e[t.model.get("wait")?"wait":"unwait"]()})},_changeData:function(){var t=this.model.get("data"),e=this,i={};r.each(t,function(t,n){i[n]=[],r.each(t,function(t){i[n].push({hid:t.hid,keep:t.keep,label:t.hid+": 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X=n.extend({},V);X.id=W,X.label=G,X.type="gene",R.groups.push(X)}for(var Y=[],J=0;J<H;++J){var K=(0|F[J])+g,Q=K+(0|q[J]),Z=new d(K,Q);Y.push(Z)}for(var tt=f(Y),et=tt.ranges(),it=0;it<et.length;++it){var nt=et[it];e(h,nt.min()+1,nt.max(),R)}if(z>L){var rt="+"==R.orientation?new d(L,z+3):new d(L-3,z),at=p(tt,rt);if(at){R.type="translation";for(var ot=at.ranges(),st=0,lt=0;ot[0].min()>et[lt].max();)lt++;for(var it=0;it<ot.length;++it){var ut=it;"-"==R.orientation&&(ut=ot.length-it-1);var nt=ot[ut];if(R.readframe=st,B){var ct=parseInt(B[ut+lt]);"number"==typeof ct&&ct>=0&&ct<=2&&(R.readframe=ct,R.readframeExplicit=!0)}var ht=nt.max()-nt.min();st=(st+ht)%3,e(h,nt.min()+1,nt.max(),R)}}}}}}},u.prototype.getFirstAdjacent=function(t,e,i,n){var r=this.bwg.chromsToIDs[t];if(void 0===r)return n([]);this.getFirstAdjacentById(r,e,i,n)},u.prototype.getFirstAdjacentById=function(t,e,i,n){var r=this;if(!this.cirHeader)return void 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t=4e3;this.zoomLevels[0]&&(t=this.zoomLevels[0].dataOffset-this.unzoomedIndexOffset),this.unzoomedView=new u(this,this.unzoomedIndexOffset,t,!1)}return this.unzoomedView},l.prototype.getZoomedView=function(t){var e=this.zoomLevels[t];return e.view||(e.view=new u(this,e.indexOffset,4e3,!0)),e.view},l.prototype._tsFetch=function(t,e,i,n,r){var a=this;if(!(t>=this.zoomLevels.length-1)){var o;return o=t<0?this.getUnzoomedView():this.getZoomedView(t),o.readWigDataById(e,i,n,r)}if(this.topLevelReductionCache){for(var s=[],l=this.topLevelReductionCache,u=0;u<l.length;++u)l[u]._chromId==e&&s.push(l[u]);return r(s)}this.getZoomedView(this.zoomLevels.length-1).readWigDataById(-1,0,3e8,function(o){return a.topLevelReductionCache=o,a._tsFetch(t,e,i,n,r)})},l.prototype.thresholdSearch=function(t,e,i,n,r){function a(){if(0==l.length)return r(null);l.sort(function(t,e){var n=t.zoom-e.zoom;return 0!=n?n:(n=t.chrOrd-e.chrOrd,0!=n?n:t.min-e.min*i)});var t=l.splice(0,1)[0];o._tsFetch(t.zoom,t.chr,t.min,t.max,function(o){var s=i>0?0:3e8;t.fromRef&&(s=e);for(var u=0;u<o.length;++u){var c,h=o[u];if(c=void 0!=h.maxScore?h.maxScore:h.score,i>0){if(c>n)if(t.zoom<0){if(h.min>s)return r(h)}else h.max>s&&l.push({chr:t.chr,chrOrd:t.chrOrd,zoom:t.zoom-2,min:h.min,max:h.max,fromRef:t.fromRef})}else if(c>n)if(t.zoom<0){if(h.max<s)return r(h)}else h.min<s&&l.push({chr:t.chr,chrOrd:t.chrOrd,zoom:t.zoom-2,min:h.min,max:h.max,fromRef:t.fromRef})}a()})}i=i<0?-1:1;for(var o=this,s=this.chromsToIDs[t],l=[{chrOrd:0,chr:s,zoom:o.zoomLevels.length-4,min:0,max:3e8,fromRef:!0}],u=1;u<=this.maxID+1;++u){var c=(s+i*u)%(this.maxID+1);c<0&&(c+=this.maxID+1),l.push({chrOrd:u,chr:c,zoom:o.zoomLevels.length-1,min:0,max:3e8})}a()},l.prototype.getAutoSQL=function(t){if(!this.asOffset)return t(null);n.when(o(this.url,this.asOffset,2048)).then(function(e){for(var i=new Uint8Array(e),n="",r=0;r<i.length&&0!=i[r];++r)n+=String.fromCharCode(i[r]);var a=/(\w+)\s+(\w+)\s+("([^"]+)")?\s+\(\s*/,o=/([\w\[\]]+)\s+(\w+)\s*;\s*("([^"]+)")?\s*/g,s=a.exec(n);if(s){var l={declType:s[1],name:s[2],comment:s[4],fields:[]};n=n.substring(s[0]);for(var u=o.exec(n);null!=u;u=o.exec(n))l.fields.push({type:u[1],name:u[2],comment:u[4]});return t(l)}})},l.prototype.getExtraIndices=function(t){var e=this;if(this.version<4||0==this.extHeaderOffset||"bigbed"!=this.type)return t(null);this.data.slice(this.extHeaderOffset,64).fetch(function(i){if(!i)return t(null,"Couldn't fetch extension header");var n=new Uint8Array(i),r=new Int16Array(i),a=(new Int32Array(i),r[0],r[1]),o=s(n,4);if(0==a)return t(null);e.data.slice(o,20*a).fetch(function(i){if(!i)return t(null,"Couldn't fetch index info");for(var n=new Uint8Array(i),r=new Int16Array(i),o=(new Int32Array(i),[]),l=0;l<a;++l){var u=r[10*l],c=r[10*l+1],d=s(n,20*l+4),f=r[10*l+8],p=new h(e,u,c,d,f);o.push(p)}t(o)})})},h.prototype.lookup=function(t,e){var i=this;this.bbi.data.slice(this.offset,32).fetch(function(n){function r(n){i.bbi.data.slice(n,4+u*(c+h)).fetch(function(n){var o=new Uint8Array(n),l=new Uint16Array(n),u=(new Uint32Array(n),o[0]),d=l[1],f=4;if(0!=u){for(var p=0;p<d;++p){for(var g="",m=0;m<c;++m){var v=o[f++];0!=v&&(g+=String.fromCharCode(v))}if(g==t){var _=s(o,f),y=a(o,f+8);return i.bbi.getUnzoomedView().fetchFeatures(function(e,n,r,a){if(a&&a.length>i.field-3)return a[i.field-3]==t},[{offset:_,size:y}],e)}f+=h}return e([])}for(var b=null,p=0;p<d;++p){for(var g="",m=0;m<c;++m){var v=o[f++];0!=v&&(g+=String.fromCharCode(v))}var w=s(o,f);if(f+=8,t.localeCompare(g)<0&&b)return void r(b);b=w}r(b)})}var o=new Uint8Array(n),l=(new Int16Array(n),new Int32Array(n)),u=(l[0],l[1]),c=l[2],h=l[3];s(o,16);r(i.offset+32)})},{makeBwg:c}}.apply(e,r))&&(t.exports=a)}).call(e,i(0))},function(t,e,i){var n,r;n=[],void 0!==(r=function(){"use strict";function t(t,e){if("number"!=typeof t||"number"!=typeof e)throw"Bad range 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r}function n(){}function r(){}function a(t,e,i,n,r){return t[0]=_,e[0]=y,i[0]=b,n[0]=w,f}function o(t,e,i,n,r){if(0!=r){if(!t)throw"Undef src";if(!i)throw"Undef dest";0==e&&r==t.length?l(t,i,n):E?l(t.subarray(e,e+r),i,n):1==t.BYTES_PER_ELEMENT&&r>100?l(new Uint8Array(t.buffer,t.byteOffset+e,r),i,n):s(t,e,i,n,r)}}function s(t,e,i,n,r){for(var a=0;a<r;++a)i[n+a]=t[e+a]}function l(t,e,i){e.set(t,i)}function u(e,i,n,r){e=i?n?new Uint8Array(e,i,n):new Uint8Array(e,i,e.byteLength-i):new Uint8Array(e);var a=new t;a.inflateInit(c,!0),a.next_in=e,a.next_in_index=0,a.avail_in=e.length;for(var s=[],l=0;;){var u=new Uint8Array(32e3);a.next_out=u,a.next_out_index=0,a.avail_out=u.length;var h=a.inflate(d);if(h!=f&&h!=p&&h!=g)throw a.msg;if(0!=a.avail_out){var m=new Uint8Array(u.length-a.avail_out);o(u,0,m,0,u.length-a.avail_out),u=m}if(s.push(u),l+=u.length,h==p||h==g)break}if(r&&(r[0]=(i||0)+a.next_in_index),1==s.length)return s[0].buffer;for(var v=new Uint8Array(l),_=0,y=0;y<s.length;++y){var b=s[y];o(b,0,v,_,b.length),_+=b.length}return v.buffer}var c=15,h=1440,d=0,f=0,p=1,g=-5,m=[0,1,3,7,15,31,63,127,255,511,1023,2047,4095,8191,16383,32767,65535],v=0,_=9,y=5,b=[96,7,256,0,8,80,0,8,16,84,8,115,82,7,31,0,8,112,0,8,48,0,9,192,80,7,10,0,8,96,0,8,32,0,9,160,0,8,0,0,8,128,0,8,64,0,9,224,80,7,6,0,8,88,0,8,24,0,9,144,83,7,59,0,8,120,0,8,56,0,9,208,81,7,17,0,8,104,0,8,40,0,9,176,0,8,8,0,8,136,0,8,72,0,9,240,80,7,4,0,8,84,0,8,20,85,8,227,83,7,43,0,8,116,0,8,52,0,9,200,81,7,13,0,8,100,0,8,36,0,9,168,0,8,4,0,8,132,0,8,68,0,9,232,80,7,8,0,8,92,0,8,28,0,9,152,84,7,83,0,8,124,0,8,60,0,9,216,82,7,23,0,8,108,0,8,44,0,9,184,0,8,12,0,8,140,0,8,76,0,9,248,80,7,3,0,8,82,0,8,18,85,8,163,83,7,35,0,8,114,0,8,50,0,9,196,81,7,11,0,8,98,0,8,34,0,9,164,0,8,2,0,8,130,0,8,66,0,9,228,80,7,7,0,8,90,0,8,26,0,9,148,84,7,67,0,8,122,0,8,58,0,9,212,82,7,19,0,8,106,0,8,42,0,9,180,0,8,10,0,8,138,0,8,74,0,9,244,80,7,5,0,8,86,0,8,22,192,8,0,83,7,51,0,8,118,0,8,54,0,9,204,81,7,15,0,8,102,0,8,38,0,9,172,0,8,6,0,8,134,0,8,70,0,9,236,80,7,9,0,8,94,0,8,30,0,9,156,84,7,99,0,8,126,0,8,62,0,9,220,82,7,27,0,8,110,0,8,46,0,9,188,0,8,14,0,8,142,0,8,78,0,9,252,96,7,256,0,8,81,0,8,17,85,8,131,82,7,31,0,8,113,0,8,49,0,9,194,80,7,10,0,8,97,0,8,33,0,9,162,0,8,1,0,8,129,0,8,65,0,9,226,80,7,6,0,8,89,0,8,25,0,9,146,83,7,59,0,8,121,0,8,57,0,9,210,81,7,17,0,8,105,0,8,41,0,9,178,0,8,9,0,8,137,0,8,73,0,9,242,80,7,4,0,8,85,0,8,21,80,8,258,83,7,43,0,8,117,0,8,53,0,9,202,81,7,13,0,8,101,0,8,37,0,9,170,0,8,5,0,8,133,0,8,69,0,9,234,80,7,8,0,8,93,0,8,29,0,9,154,84,7,83,0,8,125,0,8,61,0,9,218,82,7,23,0,8,109,0,8,45,0,9,186,0,8,13,0,8,141,0,8,77,0,9,250,80,7,3,0,8,83,0,8,19,85,8,195,83,7,35,0,8,115,0,8,51,0,9,198,81,7,11,0,8,99,0,8,35,0,9,166,0,8,3,0,8,131,0,8,67,0,9,230,80,7,7,0,8,91,0,8,27,0,9,150,84,7,67,0,8,123,0,8,59,0,9,214,82,7,19,0,8,107,0,8,43,0,9,182,0,8,11,0,8,139,0,8,75,0,9,246,80,7,5,0,8,87,0,8,23,192,8,0,83,7,51,0,8,119,0,8,55,0,9,206,81,7,15,0,8,103,0,8,39,0,9,174,0,8,7,0,8,135,0,8,71,0,9,238,80,7,9,0,8,95,0,8,31,0,9,158,84,7,99,0,8,127,0,8,63,0,9,222,82,7,27,0,8,111,0,8,47,0,9,190,0,8,15,0,8,143,0,8,79,0,9,254,96,7,256,0,8,80,0,8,16,84,8,115,82,7,31,0,8,112,0,8,48,0,9,193,80,7,10,0,8,96,0,8,32,0,9,161,0,8,0,0,8,128,0,8,64,0,9,225,80,7,6,0,8,88,0,8,24,0,9,145,83,7,59,0,8,120,0,8,56,0,9,209,81,7,17,0,8,104,0,8,40,0,9,177,0,8,8,0,8,136,0,8,72,0,9,241,80,7,4,0,8,84,0,8,20,85,8,227,83,7,43,0,8,116,0,8,52,0,9,201,81,7,13,0,8,100,0,8,36,0,9,169,0,8,4,0,8,132,0,8,68,0,9,233,80,7,8,0,8,92,0,8,28,0,9,153,84,7,83,0,8,124,0,8,60,0,9,217,82,7,23,0,8,108,0,8,44,0,9,185,0,8,12,0,8,140,0,8,76,0,9,249,80,7,3,0,8,82,0,8,18,85,8,163,83,7,35,0,8,114,0,8,50,0,9,197,81,7,11,0,8,98,0,8,34,0,9,165,0,8,2,0,8,130,0,8,66,0,9,229,80,7,7,0,8,90,0,8,26,0,9,149,84,7,67,0,8,122,0,8,58,0,9,213,82,7,19,0,8,106,0,8,42,0,9,181,0,8,10,0,8,138,0,8,74,0,9,245,80,7,5,0,8,86,0,8,22,192,8,0,83,7,51,0,8,118,0,8,54,0,9,205,81,7,15,0,8,102,0,8,38,0,9,173,0,8,6,0,8,134,0,8,70,0,9,237,80,7,9,0,8,94,0,8,30,0,9,157,84,7,99,0,8,126,0,8,62,0,9,221,82,7,27,0,8,110,0,8,46,0,9,189,0,8,14,0,8,142,0,8,78,0,9,253,96,7,256,0,8,81,0,8,17,85,8,131,82,7,31,0,8,113,0,8,49,0,9,195,80,7,10,0,8,97,0,8,33,0,9,163,0,8,1,0,8,129,0,8,65,0,9,227,80,7,6,0,8,89,0,8,25,0,9,147,83,7,59,0,8,121,0,8,57,0,9,211,81,7,17,0,8,105,0,8,41,0,9,179,0,8,9,0,8,137,0,8,73,0,9,243,80,7,4,0,8,85,0,8,21,80,8,258,83,7,43,0,8,117,0,8,53,0,9,203,81,7,13,0,8,101,0,8,37,0,9,171,0,8,5,0,8,133,0,8,69,0,9,235,80,7,8,0,8,93,0,8,29,0,9,155,84,7,83,0,8,125,0,8,61,0,9,219,82,7,23,0,8,109,0,8,45,0,9,187,0,8,13,0,8,141,0,8,77,0,9,251,80,7,3,0,8,83,0,8,19,85,8,195,83,7,35,0,8,115,0,8,51,0,9,199,81,7,11,0,8,99,0,8,35,0,9,167,0,8,3,0,8,131,0,8,67,0,9,231,80,7,7,0,8,91,0,8,27,0,9,151,84,7,67,0,8,123,0,8,59,0,9,215,82,7,19,0,8,107,0,8,43,0,9,183,0,8,11,0,8,139,0,8,75,0,9,247,80,7,5,0,8,87,0,8,23,192,8,0,83,7,51,0,8,119,0,8,55,0,9,207,81,7,15,0,8,103,0,8,39,0,9,175,0,8,7,0,8,135,0,8,71,0,9,239,80,7,9,0,8,95,0,8,31,0,9,159,84,7,99,0,8,127,0,8,63,0,9,223,82,7,27,0,8,111,0,8,47,0,9,191,0,8,15,0,8,143,0,8,79,0,9,255],w=[80,5,1,87,5,257,83,5,17,91,5,4097,81,5,5,89,5,1025,85,5,65,93,5,16385,80,5,3,88,5,513,84,5,33,92,5,8193,82,5,9,90,5,2049,86,5,129,192,5,24577,80,5,2,87,5,385,83,5,25,91,5,6145,81,5,7,89,5,1537,85,5,97,93,5,24577,80,5,4,88,5,769,84,5,49,92,5,12289,82,5,13,90,5,3073,86,5,193,192,5,24577],x=[3,4,5,6,7,8,9,10,11,13,15,17,19,23,27,31,35,43,51,59,67,83,99,115,131,163,195,227,258,0,0],C=[0,0,0,0,0,0,0,0,1,1,1,1,2,2,2,2,3,3,3,3,4,4,4,4,5,5,5,5,0,112,112],k=[1,2,3,4,5,7,9,13,17,25,33,49,65,97,129,193,257,385,513,769,1025,1537,2049,3073,4097,6145,8193,12289,16385,24577],S=[0,0,0,0,1,1,2,2,3,3,4,4,5,5,6,6,7,7,8,8,9,9,10,10,11,11,12,12,13,13];t.prototype.inflateInit=function(t,i){return t||(t=c),i&&(i=!1),this.istate=new e,this.istate.inflateInit(this,i?-t:t)},t.prototype.inflate=function(t){return null==this.istate?-2:this.istate.inflate(this,t)},t.prototype.inflateEnd=function(){if(null==this.istate)return-2;var t=istate.inflateEnd(this);return this.istate=null,t},t.prototype.inflateSync=function(){return istate.inflateSync(this)},t.prototype.inflateSetDictionary=function(t,e){return istate.inflateSetDictionary(this,t,e)},e.prototype.inflateReset=function(t){return null==t||null==t.istate?-2:(t.total_in=t.total_out=0,t.msg=null,t.istate.mode=0!=t.istate.nowrap?7:0,t.istate.blocks.reset(t,null),f)},e.prototype.inflateEnd=function(t){return null!=this.blocks&&this.blocks.free(t),this.blocks=null,f},e.prototype.inflateInit=function(t,e){return t.msg=null,this.blocks=null,nowrap=0,e<0&&(e=-e,nowrap=1),e<8||e>15?(this.inflateEnd(t),-2):(this.wbits=e,t.istate.blocks=new i(t,0!=t.istate.nowrap?null:this,1<<e),this.inflateReset(t),f)},e.prototype.inflate=function(t,e){var i,n;if(null==t||null==t.istate||null==t.next_in)return-2;for(e=4==e?g:f,i=g;;)switch(t.istate.mode){case 0:if(0==t.avail_in)return i;if(i=e,t.avail_in--,t.total_in++,8!=(15&(t.istate.method=t.next_in[t.next_in_index++]))){t.istate.mode=13,t.msg="unknown compression method",t.istate.marker=5;break}if(8+(t.istate.method>>4)>t.istate.wbits){t.istate.mode=13,t.msg="invalid window size",t.istate.marker=5;break}t.istate.mode=1;case 1:if(0==t.avail_in)return i;if(i=e,t.avail_in--,t.total_in++,n=255&t.next_in[t.next_in_index++],((t.istate.method<<8)+n)%31!=0){t.istate.mode=13,t.msg="incorrect header check",t.istate.marker=5;break}if(0==(32&n)){t.istate.mode=7;break}t.istate.mode=2;case 2:if(0==t.avail_in)return i;i=e,t.avail_in--,t.total_in++,t.istate.need=(255&t.next_in[t.next_in_index++])<<24&4278190080,t.istate.mode=3;case 3:if(0==t.avail_in)return i;i=e,t.avail_in--,t.total_in++,t.istate.need+=(255&t.next_in[t.next_in_index++])<<16&16711680,t.istate.mode=4;case 4:if(0==t.avail_in)return i;i=e,t.avail_in--,t.total_in++,t.istate.need+=(255&t.next_in[t.next_in_index++])<<8&65280,t.istate.mode=5;case 5:return 0==t.avail_in?i:(i=e,t.avail_in--,t.total_in++,t.istate.need+=255&t.next_in[t.next_in_index++],t.adler=t.istate.need,t.istate.mode=6,2);case 6:return t.istate.mode=13,t.msg="need dictionary",t.istate.marker=0,-2;case 7:if(-3==(i=t.istate.blocks.proc(t,i))){t.istate.mode=13,t.istate.marker=0;break}if(i==f&&(i=e),i!=p)return i;if(i=e,t.istate.blocks.reset(t,t.istate.was),0!=t.istate.nowrap){t.istate.mode=12;break}t.istate.mode=8;case 8:if(0==t.avail_in)return i;i=e,t.avail_in--,t.total_in++,t.istate.need=(255&t.next_in[t.next_in_index++])<<24&4278190080,t.istate.mode=9;case 9:if(0==t.avail_in)return i;i=e,t.avail_in--,t.total_in++,t.istate.need+=(255&t.next_in[t.next_in_index++])<<16&16711680,t.istate.mode=10;case 10:if(0==t.avail_in)return i;i=e,t.avail_in--,t.total_in++,t.istate.need+=(255&t.next_in[t.next_in_index++])<<8&65280,t.istate.mode=11;case 11:if(0==t.avail_in)return i;if(i=e,t.avail_in--,t.total_in++,t.istate.need+=255&t.next_in[t.next_in_index++],t.istate.was[0]!=t.istate.need){t.istate.mode=13,t.msg="incorrect data check",t.istate.marker=5;break}t.istate.mode=12;case 12:return p;case 13:return-3;default:return-2}},e.prototype.inflateSetDictionary=function(t,e,i){var n=0,r=i;return null==t||null==t.istate||6!=t.istate.mode?-2:t._adler.adler32(1,e,0,i)!=t.adler?-3:(t.adler=t._adler.adler32(0,null,0,0),r>=1<<t.istate.wbits&&(r=(1<<t.istate.wbits)-1,n=i-r),t.istate.blocks.set_dictionary(e,n,r),t.istate.mode=7,f)};var T=[0,0,255,255];e.prototype.inflateSync=function(t){var e,i,n,r,a;if(null==t||null==t.istate)return-2;if(13!=t.istate.mode&&(t.istate.mode=13,t.istate.marker=0),0==(e=t.avail_in))return g;for(i=t.next_in_index,n=t.istate.marker;0!=e&&n<4;)t.next_in[i]==T[n]?n++:n=0!=t.next_in[i]?0:4-n,i++,e--;return t.total_in+=i-t.next_in_index,t.next_in_index=i,t.avail_in=e,t.istate.marker=n,4!=n?-3:(r=t.total_in,a=t.total_out,this.inflateReset(t),t.total_in=r,t.total_out=a,t.istate.mode=7,f)},e.prototype.inflateSyncPoint=function(t){return null==t||null==t.istate||null==t.istate.blocks?-2:t.istate.blocks.sync_point()};var A=[16,17,18,0,8,7,9,6,10,5,11,4,12,3,13,2,14,1,15];i.prototype.reset=function(t,e){e&&(e[0]=this.check),6==this.mode&&this.codes.free(t),this.mode=v,this.bitk=0,this.bitb=0,this.read=this.write=0,this.checkfn&&(t.adler=this.check=t._adler.adler32(0,null,0,0))},i.prototype.proc=function(t,e){var i,n,r,s,l,u,c;for(s=t.next_in_index,l=t.avail_in,n=this.bitb,r=this.bitk,u=this.write,c=u<this.read?this.read-u-1:this.end-u;;)switch(this.mode){case v:for(;r<3;){if(0==l)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);e=f,l--,n|=(255&t.next_in[s++])<<r,r+=8}switch(i=7&n,this.last=1&i,i>>>1){case 0:n>>>=3,r-=3,i=7&r,n>>>=i,r-=i,this.mode=1;break;case 1:var h=new Int32Array(1),d=new Int32Array(1),g=[],_=[];a(h,d,g,_,t),this.codes.init(h[0],d[0],g[0],0,_[0],0,t),n>>>=3,r-=3,this.mode=6;break;case 2:n>>>=3,r-=3,this.mode=3;break;case 3:return n>>>=3,r-=3,this.mode=13,t.msg="invalid block type",e=-3,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e)}break;case 1:for(;r<32;){if(0==l)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);e=f,l--,n|=(255&t.next_in[s++])<<r,r+=8}if((~n>>>16&65535)!=(65535&n))return this.mode=13,t.msg="invalid stored block lengths",e=-3,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);this.left=65535&n,n=r=0,this.mode=0!=this.left?2:0!=this.last?7:v;break;case 2:if(0==l)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,write=u,this.inflate_flush(t,e);if(0==c&&(u==end&&0!=read&&(u=0,c=u<this.read?this.read-u-1:this.end-u),0==c&&(this.write=u,e=this.inflate_flush(t,e),u=this.write,c=u<this.read?this.read-u-1:this.end-u,u==this.end&&0!=this.read&&(u=0,c=u<this.read?this.read-u-1:this.end-u),0==c)))return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);if(e=f,i=this.left,i>l&&(i=l),i>c&&(i=c),o(t.next_in,s,this.window,u,i),s+=i,l-=i,u+=i,c-=i,0!=(this.left-=i))break;this.mode=0!=this.last?7:v;break;case 3:for(;r<14;){if(0==l)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);e=f,l--,n|=(255&t.next_in[s++])<<r,r+=8}if(this.table=i=16383&n,(31&i)>29||(i>>5&31)>29)return this.mode=9,t.msg="too many length or distance symbols",e=-3,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);if(i=258+(31&i)+(i>>5&31),null==this.blens||this.blens.length<i)this.blens=new Int32Array(i);else for(var y=0;y<i;y++)this.blens[y]=0;n>>>=14,r-=14,this.index=0,mode=4;case 4:for(;this.index<4+(this.table>>>10);){for(;r<3;){if(0==l)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);e=f,l--,n|=(255&t.next_in[s++])<<r,r+=8}this.blens[A[this.index++]]=7&n,n>>>=3,r-=3}for(;this.index<19;)this.blens[A[this.index++]]=0;if(this.bb[0]=7,(i=this.inftree.inflate_trees_bits(this.blens,this.bb,this.tb,this.hufts,t))!=f)return e=i,-3==e&&(this.blens=null,this.mode=9),this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,write=u,this.inflate_flush(t,e);this.index=0,this.mode=5;case 5:for(;;){if(i=this.table,!(this.index<258+(31&i)+(i>>5&31)))break;var y,b,w;for(i=this.bb[0];r<i;){if(0==l)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);e=f,l--,n|=(255&t.next_in[s++])<<r,r+=8}if(i=this.hufts[3*(this.tb[0]+(n&m[i]))+1],(w=this.hufts[3*(this.tb[0]+(n&m[i]))+2])<16)n>>>=i,r-=i,this.blens[this.index++]=w;else{for(y=18==w?7:w-14,b=18==w?11:3;r<i+y;){if(0==l)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);e=f,l--,n|=(255&t.next_in[s++])<<r,r+=8}if(n>>>=i,r-=i,b+=n&m[y],n>>>=y,r-=y,y=this.index,i=this.table,y+b>258+(31&i)+(i>>5&31)||16==w&&y<1)return this.blens=null,this.mode=9,t.msg="invalid bit length repeat",e=-3,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);w=16==w?this.blens[y-1]:0;do{this.blens[y++]=w}while(0!=--b);this.index=y}}this.tb[0]=-1;var h=new Int32Array(1),d=new Int32Array(1),g=new Int32Array(1),_=new Int32Array(1);if(h[0]=9,d[0]=6,i=this.table,(i=this.inftree.inflate_trees_dynamic(257+(31&i),1+(i>>5&31),this.blens,h,d,g,_,this.hufts,t))!=f)return-3==i&&(this.blens=null,this.mode=13),e=i,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);this.codes.init(h[0],d[0],this.hufts,g[0],this.hufts,_[0],t),this.mode=6;case 6:if(this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,(e=this.codes.proc(this,t,e))!=p)return this.inflate_flush(t,e);if(e=f,this.codes.free(t),s=t.next_in_index,l=t.avail_in,n=this.bitb,r=this.bitk,u=this.write,c=u<this.read?this.read-u-1:this.end-u,0==this.last){this.mode=v;break}this.mode=7;case 7:if(this.write=u,e=this.inflate_flush(t,e),u=this.write,c=u<this.read?this.read-u-1:this.end-u,this.read!=this.write)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);mode=12;case 8:return e=p,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);case 9:return e=-3,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);default:return e=-2,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e)}},i.prototype.free=function(t){this.reset(t,null),this.window=null,this.hufts=null},i.prototype.set_dictionary=function(t,e,i){o(t,e,window,0,i),this.read=this.write=i},i.prototype.sync_point=function(){return 1==this.mode},i.prototype.inflate_flush=function(t,e){var i,n,r;return n=t.next_out_index,r=this.read,i=(r<=this.write?this.write:this.end)-r,i>t.avail_out&&(i=t.avail_out),0!=i&&e==g&&(e=f),t.avail_out-=i,t.total_out+=i,null!=this.checkfn&&(t.adler=this.check=t._adler.adler32(this.check,this.window,r,i)),o(this.window,r,t.next_out,n,i),n+=i,r+=i,r==this.end&&(r=0,this.write==this.end&&(this.write=0),i=this.write-r,i>t.avail_out&&(i=t.avail_out),0!=i&&e==g&&(e=f),t.avail_out-=i,t.total_out+=i,null!=this.checkfn&&(t.adler=this.check=t._adler.adler32(this.check,this.window,r,i)),o(this.window,r,t.next_out,n,i),n+=i,r+=i),t.next_out_index=n,this.read=r,e};n.prototype.init=function(t,e,i,n,r,a,o){this.mode=0,this.lbits=t,this.dbits=e,this.ltree=i,this.ltree_index=n,this.dtree=r,this.dtree_index=a,this.tree=null},n.prototype.proc=function(t,e,i){var n,r,a,o,s,l,u,c=0,h=0,d=0;for(d=e.next_in_index,o=e.avail_in,c=t.bitb,h=t.bitk,s=t.write,l=s<t.read?t.read-s-1:t.end-s;;)switch(this.mode){case 0:if(l>=258&&o>=10&&(t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,i=this.inflate_fast(this.lbits,this.dbits,this.ltree,this.ltree_index,this.dtree,this.dtree_index,t,e),d=e.next_in_index,o=e.avail_in,c=t.bitb,h=t.bitk,s=t.write,l=s<t.read?t.read-s-1:t.end-s,i!=f)){this.mode=i==p?7:9;break}this.need=this.lbits,this.tree=this.ltree,this.tree_index=this.ltree_index,this.mode=1;case 1:for(n=this.need;h<n;){if(0==o)return t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);i=f,o--,c|=(255&e.next_in[d++])<<h,h+=8}if(r=3*(this.tree_index+(c&m[n])),c>>>=this.tree[r+1],h-=this.tree[r+1],0==(a=this.tree[r])){this.lit=this.tree[r+2],this.mode=6;break}if(0!=(16&a)){this.get=15&a,this.len=this.tree[r+2],this.mode=2;break}if(0==(64&a)){this.need=a,this.tree_index=r/3+this.tree[r+2];break}if(0!=(32&a)){this.mode=7;break}return this.mode=9,e.msg="invalid literal/length code",i=-3,t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);case 2:for(n=this.get;h<n;){if(0==o)return t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);i=f,o--,c|=(255&e.next_in[d++])<<h,h+=8}this.len+=c&m[n],c>>=n,h-=n,this.need=this.dbits,this.tree=this.dtree,this.tree_index=this.dtree_index,this.mode=3;case 3:for(n=this.need;h<n;){if(0==o)return t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);i=f,o--,c|=(255&e.next_in[d++])<<h,h+=8}if(r=3*(this.tree_index+(c&m[n])),c>>=this.tree[r+1],h-=this.tree[r+1],0!=(16&(a=this.tree[r]))){this.get=15&a,this.dist=this.tree[r+2],this.mode=4;break}if(0==(64&a)){this.need=a,this.tree_index=r/3+this.tree[r+2];break}return this.mode=9,e.msg="invalid distance code",i=-3,t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);case 4:for(n=this.get;h<n;){if(0==o)return t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);i=f,o--,c|=(255&e.next_in[d++])<<h,h+=8}this.dist+=c&m[n],c>>=n,h-=n,this.mode=5;case 5:for(u=s-this.dist;u<0;)u+=t.end;for(;0!=this.len;){if(0==l&&(s==t.end&&0!=t.read&&(s=0,l=s<t.read?t.read-s-1:t.end-s),0==l&&(t.write=s,i=t.inflate_flush(e,i),s=t.write,l=s<t.read?t.read-s-1:t.end-s,s==t.end&&0!=t.read&&(s=0,l=s<t.read?t.read-s-1:t.end-s),0==l)))return t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);t.window[s++]=t.window[u++],l--,u==t.end&&(u=0),this.len--}this.mode=0;break;case 6:if(0==l&&(s==t.end&&0!=t.read&&(s=0,l=s<t.read?t.read-s-1:t.end-s),0==l&&(t.write=s,i=t.inflate_flush(e,i),s=t.write,l=s<t.read?t.read-s-1:t.end-s,s==t.end&&0!=t.read&&(s=0,l=s<t.read?t.read-s-1:t.end-s),0==l)))return t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);i=f,t.window[s++]=this.lit,l--,this.mode=0;break;case 7:if(h>7&&(h-=8,o++,d--),t.write=s,i=t.inflate_flush(e,i),s=t.write,l=s<t.read?t.read-s-1:t.end-s,t.read!=t.write)return t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);this.mode=8;case 8:return i=p,t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);case 9:return i=-3,t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);default:return i=-2,t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i)}},n.prototype.free=function(t){},n.prototype.inflate_fast=function(t,e,i,n,r,a,s,l){var u,c,h,d,g,v,_,y,b,w,x,C,k,S,T,A;_=l.next_in_index,y=l.avail_in,g=s.bitb,v=s.bitk,b=s.write,w=b<s.read?s.read-b-1:s.end-b,x=m[t],C=m[e];do{for(;v<20;)y--,g|=(255&l.next_in[_++])<<v,v+=8;if(u=g&x,c=i,h=n,A=3*(h+u),0!=(d=c[A]))for(;;){if(g>>=c[A+1],v-=c[A+1],0!=(16&d)){for(d&=15,k=c[A+2]+(g&m[d]),g>>=d,v-=d;v<15;)y--,g|=(255&l.next_in[_++])<<v,v+=8;for(u=g&C,c=r,h=a,A=3*(h+u),d=c[A];;){if(g>>=c[A+1],v-=c[A+1],0!=(16&d)){for(d&=15;v<d;)y--,g|=(255&l.next_in[_++])<<v,v+=8;if(S=c[A+2]+(g&m[d]),g>>=d,v-=d,w-=k,b>=S)T=b-S,s.window[b++]=s.window[T++],s.window[b++]=s.window[T++],k-=2;else{T=b-S;do{T+=s.end}while(T<0);if(d=s.end-T,k>d){if(k-=d,b-T>0&&d>b-T)do{s.window[b++]=s.window[T++]}while(0!=--d);else o(s.window,T,s.window,b,d),b+=d,T+=d,d=0;T=0}}do{s.window[b++]=s.window[T++]}while(0!=--k);break}if(0!=(64&d))return l.msg="invalid distance code",k=l.avail_in-y,k=v>>3<k?v>>3:k,y+=k,_-=k,v-=k<<3,s.bitb=g,s.bitk=v,l.avail_in=y,l.total_in+=_-l.next_in_index,l.next_in_index=_,s.write=b,-3;u+=c[A+2],u+=g&m[d],A=3*(h+u),d=c[A]}break}if(0!=(64&d))return 0!=(32&d)?(k=l.avail_in-y,k=v>>3<k?v>>3:k,y+=k,_-=k,v-=k<<3,s.bitb=g,s.bitk=v,l.avail_in=y,l.total_in+=_-l.next_in_index,l.next_in_index=_,s.write=b,p):(l.msg="invalid literal/length code",k=l.avail_in-y,k=v>>3<k?v>>3:k,y+=k,_-=k,v-=k<<3,s.bitb=g,s.bitk=v,l.avail_in=y,l.total_in+=_-l.next_in_index,l.next_in_index=_,s.write=b,-3);if(u+=c[A+2],u+=g&m[d],A=3*(h+u),0==(d=c[A])){g>>=c[A+1],v-=c[A+1],s.window[b++]=c[A+2],w--;break}}else g>>=c[A+1],v-=c[A+1],s.window[b++]=c[A+2],w--}while(w>=258&&y>=10);return k=l.avail_in-y,k=v>>3<k?v>>3:k,y+=k,_-=k,v-=k<<3,s.bitb=g,s.bitk=v,l.avail_in=y,l.total_in+=_-l.next_in_index,l.next_in_index=_,s.write=b,f},r.prototype.huft_build=function(t,e,i,n,r,a,s,l,u,c,d){var p,m,v,_,y,b,w,x,C,k,S,T,A,M,E;k=0,y=i;do{this.c[t[e+k]]++,k++,y--}while(0!=y);if(this.c[0]==i)return s[0]=-1,l[0]=0,f;for(x=l[0],b=1;b<=15&&0==this.c[b];b++);for(w=b,x<b&&(x=b),y=15;0!=y&&0==this.c[y];y--);for(v=y,x>y&&(x=y),l[0]=x,M=1<<b;b<y;b++,M<<=1)if((M-=this.c[b])<0)return-3;if((M-=this.c[y])<0)return-3;for(this.c[y]+=M,this.x[1]=b=0,k=1,A=2;0!=--y;)this.x[A]=b+=this.c[k],A++,k++;y=0,k=0;do{0!=(b=t[e+k])&&(this.v[this.x[b]++]=y),k++}while(++y<i);for(i=this.x[v],this.x[0]=y=0,k=0,_=-1,T=-x,this.u[0]=0,S=0,E=0;w<=v;w++)for(p=this.c[w];0!=p--;){for(;w>T+x;){if(_++,T+=x,E=v-T,E=E>x?x:E,(m=1<<(b=w-T))>p+1&&(m-=p+1,A=w,b<E))for(;++b<E&&!((m<<=1)<=this.c[++A]);)m-=this.c[A];if(E=1<<b,this.hn[0]+E>h)return-3;this.u[_]=S=this.hn[0],this.hn[0]+=E,0!=_?(this.x[_]=y,this.r[0]=b,this.r[1]=x,b=y>>>T-x,this.r[2]=S-this.u[_-1]-b,o(this.r,0,u,3*(this.u[_-1]+b),3)):s[0]=S}for(this.r[1]=w-T,k>=i?this.r[0]=192:d[k]<n?(this.r[0]=this.v[k]<256?0:96,this.r[2]=this.v[k++]):(this.r[0]=a[this.v[k]-n]+16+64,this.r[2]=r[this.v[k++]-n]),m=1<<w-T,b=y>>>T;b<E;b+=m)o(this.r,0,u,3*(S+b),3);for(b=1<<w-1;0!=(y&b);b>>>=1)y^=b;for(y^=b,C=(1<<T)-1;(y&C)!=this.x[_];)_--,T-=x,C=(1<<T)-1}return 0!=M&&1!=v?g:f},r.prototype.inflate_trees_bits=function(t,e,i,n,r){var a;return this.initWorkArea(19),this.hn[0]=0,a=this.huft_build(t,0,19,19,null,null,i,e,n,this.hn,this.v),-3==a?r.msg="oversubscribed dynamic bit lengths tree":a!=g&&0!=e[0]||(r.msg="incomplete dynamic bit lengths tree",a=-3),a},r.prototype.inflate_trees_dynamic=function(t,e,i,n,r,a,o,s,l){var u;return this.initWorkArea(288),this.hn[0]=0,(u=this.huft_build(i,0,t,257,x,C,a,n,s,this.hn,this.v))!=f||0==n[0]?(-3==u?l.msg="oversubscribed literal/length tree":-4!=u&&(l.msg="incomplete literal/length tree",u=-3),u):(this.initWorkArea(288),u=this.huft_build(i,t,e,0,k,S,o,r,s,this.hn,this.v),u!=f||0==r[0]&&t>257?(-3==u?l.msg="oversubscribed distance tree":u==g?(l.msg="incomplete distance tree",u=-3):-4!=u&&(l.msg="empty distance tree with lengths",u=-3),u):f)},r.prototype.initWorkArea=function(t){null==this.hn&&(this.hn=new Int32Array(1),this.v=new Int32Array(t),this.c=new Int32Array(16),this.r=new Int32Array(3),this.u=new 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c=15,h=1440,d=0,f=0,p=1,g=-5,m=[0,1,3,7,15,31,63,127,255,511,1023,2047,4095,8191,16383,32767,65535],v=0,_=9,y=5,b=[96,7,256,0,8,80,0,8,16,84,8,115,82,7,31,0,8,112,0,8,48,0,9,192,80,7,10,0,8,96,0,8,32,0,9,160,0,8,0,0,8,128,0,8,64,0,9,224,80,7,6,0,8,88,0,8,24,0,9,144,83,7,59,0,8,120,0,8,56,0,9,208,81,7,17,0,8,104,0,8,40,0,9,176,0,8,8,0,8,136,0,8,72,0,9,240,80,7,4,0,8,84,0,8,20,85,8,227,83,7,43,0,8,116,0,8,52,0,9,200,81,7,13,0,8,100,0,8,36,0,9,168,0,8,4,0,8,132,0,8,68,0,9,232,80,7,8,0,8,92,0,8,28,0,9,152,84,7,83,0,8,124,0,8,60,0,9,216,82,7,23,0,8,108,0,8,44,0,9,184,0,8,12,0,8,140,0,8,76,0,9,248,80,7,3,0,8,82,0,8,18,85,8,163,83,7,35,0,8,114,0,8,50,0,9,196,81,7,11,0,8,98,0,8,34,0,9,164,0,8,2,0,8,130,0,8,66,0,9,228,80,7,7,0,8,90,0,8,26,0,9,148,84,7,67,0,8,122,0,8,58,0,9,212,82,7,19,0,8,106,0,8,42,0,9,180,0,8,10,0,8,138,0,8,74,0,9,244,80,7,5,0,8,86,0,8,22,192,8,0,83,7,51,0,8,118,0,8,54,0,9,204,81,7,15,0,8,102,0,8,38,0,9,172,0,8,6,0,8,134,0,8,70,0,9,236,80,7,9,0,8,94,0,8,30,0,9,156,84,7,99,0,8,126,0,8,62,0,9,220,82,7,27,0,8,110,0,8,46,0,9,188,0,8,14,0,8,142,0,8,78,0,9,252,96,7,256,0,8,81,0,8,17,85,8,131,82,7,31,0,8,113,0,8,49,0,9,194,80,7,10,0,8,97,0,8,33,0,9,162,0,8,1,0,8,129,0,8,65,0,9,226,80,7,6,0,8,89,0,8,25,0,9,146,83,7,59,0,8,121,0,8,57,0,9,210,81,7,17,0,8,105,0,8,41,0,9,178,0,8,9,0,8,137,0,8,73,0,9,242,80,7,4,0,8,85,0,8,21,80,8,258,83,7,43,0,8,117,0,8,53,0,9,202,81,7,13,0,8,101,0,8,37,0,9,170,0,8,5,0,8,133,0,8,69,0,9,234,80,7,8,0,8,93,0,8,29,0,9,154,84,7,83,0,8,125,0,8,61,0,9,218,82,7,23,0,8,109,0,8,45,0,9,186,0,8,13,0,8,141,0,8,77,0,9,250,80,7,3,0,8,83,0,8,19,85,8,195,83,7,35,0,8,115,0,8,51,0,9,198,81,7,11,0,8,99,0,8,35,0,9,166,0,8,3,0,8,131,0,8,67,0,9,230,80,7,7,0,8,91,0,8,27,0,9,150,84,7,67,0,8,123,0,8,59,0,9,214,82,7,19,0,8,107,0,8,43,0,9,182,0,8,11,0,8,139,0,8,75,0,9,246,80,7,5,0,8,87,0,8,23,192,8,0,83,7,51,0,8,119,0,8,55,0,9,206,81,7,15,0,8,103,0,8,39,0,9,174,0,8,7,0,8,135,0,8,71,0,9,238,80,7,9,0,8,95,0,8,31,0,9,158,84,7,99,0,8,127,0,8,63,0,9,222,82,7,27,0,8,111,0,8,47,0,9,190,0,8,15,0,8,143,0,8,79,0,9,254,96,7,256,0,8,80,0,8,16,84,8,115,82,7,31,0,8,112,0,8,48,0,9,193,80,7,10,0,8,96,0,8,32,0,9,161,0,8,0,0,8,128,0,8,64,0,9,225,80,7,6,0,8,88,0,8,24,0,9,145,83,7,59,0,8,120,0,8,56,0,9,209,81,7,17,0,8,104,0,8,40,0,9,177,0,8,8,0,8,136,0,8,72,0,9,241,80,7,4,0,8,84,0,8,20,85,8,227,83,7,43,0,8,116,0,8,52,0,9,201,81,7,13,0,8,100,0,8,36,0,9,169,0,8,4,0,8,132,0,8,68,0,9,233,80,7,8,0,8,92,0,8,28,0,9,153,84,7,83,0,8,124,0,8,60,0,9,217,82,7,23,0,8,108,0,8,44,0,9,185,0,8,12,0,8,140,0,8,76,0,9,249,80,7,3,0,8,82,0,8,18,85,8,163,83,7,35,0,8,114,0,8,50,0,9,197,81,7,11,0,8,98,0,8,34,0,9,165,0,8,2,0,8,130,0,8,66,0,9,229,80,7,7,0,8,90,0,8,26,0,9,149,84,7,67,0,8,122,0,8,58,0,9,213,82,7,19,0,8,106,0,8,42,0,9,181,0,8,10,0,8,138,0,8,74,0,9,245,80,7,5,0,8,86,0,8,22,192,8,0,83,7,51,0,8,118,0,8,54,0,9,205,81,7,15,0,8,102,0,8,38,0,9,173,0,8,6,0,8,134,0,8,70,0,9,237,80,7,9,0,8,94,0,8,30,0,9,157,84,7,99,0,8,126,0,8,62,0,9,221,82,7,27,0,8,110,0,8,46,0,9,189,0,8,14,0,8,142,0,8,78,0,9,253,96,7,256,0,8,81,0,8,17,85,8,131,82,7,31,0,8,113,0,8,49,0,9,195,80,7,10,0,8,97,0,8,33,0,9,163,0,8,1,0,8,129,0,8,65,0,9,227,80,7,6,0,8,89,0,8,25,0,9,147,83,7,59,0,8,121,0,8,57,0,9,211,81,7,17,0,8,105,0,8,41,0,9,179,0,8,9,0,8,137,0,8,73,0,9,243,80,7,4,0,8,85,0,8,21,80,8,258,83,7,43,0,8,117,0,8,53,0,9,203,81,7,13,0,8,101,0,8,37,0,9,171,0,8,5,0,8,133,0,8,69,0,9,235,80,7,8,0,8,93,0,8,29,0,9,155,84,7,83,0,8,125,0,8,61,0,9,219,82,7,23,0,8,109,0,8,45,0,9,187,0,8,13,0,8,141,0,8,77,0,9,251,80,7,3,0,8,83,0,8,19,85,8,195,83,7,35,0,8,115,0,8,51,0,9,199,81,7,11,0,8,99,0,8,35,0,9,167,0,8,3,0,8,131,0,8,67,0,9,231,80,7,7,0,8,91,0,8,27,0,9,151,84,7,67,0,8,123,0,8,59,0,9,215,82,7,19,0,8,107,0,8,43,0,9,183,0,8,11,0,8,139,0,8,75,0,9,247,80,7,5,0,8,87,0,8,23,192,8,0,83,7,51,0,8,119,0,8,55,0,9,207,81,7,15,0,8,103,0,8,39,0,9,175,0,8,7,0,8,135,0,8,71,0,9,239,80,7,9,0,8,95,0,8,31,0,9,159,84,7,99,0,8,127,0,8,63,0,9,223,82,7,27,0,8,111,0,8,47,0,9,191,0,8,15,0,8,143,0,8,79,0,9,255],w=[80,5,1,87,5,257,83,5,17,91,5,4097,81,5,5,89,5,1025,85,5,65,93,5,16385,80,5,3,88,5,513,84,5,33,92,5,8193,82,5,9,90,5,2049,86,5,129,192,5,24577,80,5,2,87,5,385,83,5,25,91,5,6145,81,5,7,89,5,1537,85,5,97,93,5,24577,80,5,4,88,5,769,84,5,49,92,5,12289,82,5,13,90,5,3073,86,5,193,192,5,24577],x=[3,4,5,6,7,8,9,10,11,13,15,17,19,23,27,31,35,43,51,59,67,83,99,115,131,163,195,227,258,0,0],C=[0,0,0,0,0,0,0,0,1,1,1,1,2,2,2,2,3,3,3,3,4,4,4,4,5,5,5,5,0,112,112],k=[1,2,3,4,5,7,9,13,17,25,33,49,65,97,129,193,257,385,513,769,1025,1537,2049,3073,4097,6145,8193,12289,16385,24577],S=[0,0,0,0,1,1,2,2,3,3,4,4,5,5,6,6,7,7,8,8,9,9,10,10,11,11,12,12,13,13];t.prototype.inflateInit=function(t,i){return t||(t=c),i&&(i=!1),this.istate=new e,this.istate.inflateInit(this,i?-t:t)},t.prototype.inflate=function(t){return null==this.istate?-2:this.istate.inflate(this,t)},t.prototype.inflateEnd=function(){if(null==this.istate)return-2;var t=istate.inflateEnd(this);return this.istate=null,t},t.prototype.inflateSync=function(){return istate.inflateSync(this)},t.prototype.inflateSetDictionary=function(t,e){return istate.inflateSetDictionary(this,t,e)},e.prototype.inflateReset=function(t){return null==t||null==t.istate?-2:(t.total_in=t.total_out=0,t.msg=null,t.istate.mode=0!=t.istate.nowrap?7:0,t.istate.blocks.reset(t,null),f)},e.prototype.inflateEnd=function(t){return null!=this.blocks&&this.blocks.free(t),this.blocks=null,f},e.prototype.inflateInit=function(t,e){return t.msg=null,this.blocks=null,nowrap=0,e<0&&(e=-e,nowrap=1),e<8||e>15?(this.inflateEnd(t),-2):(this.wbits=e,t.istate.blocks=new i(t,0!=t.istate.nowrap?null:this,1<<e),this.inflateReset(t),f)},e.prototype.inflate=function(t,e){var i,n;if(null==t||null==t.istate||null==t.next_in)return-2;for(e=4==e?g:f,i=g;;)switch(t.istate.mode){case 0:if(0==t.avail_in)return i;if(i=e,t.avail_in--,t.total_in++,8!=(15&(t.istate.method=t.next_in[t.next_in_index++]))){t.istate.mode=13,t.msg="unknown compression method",t.istate.marker=5;break}if(8+(t.istate.method>>4)>t.istate.wbits){t.istate.mode=13,t.msg="invalid window size",t.istate.marker=5;break}t.istate.mode=1;case 1:if(0==t.avail_in)return i;if(i=e,t.avail_in--,t.total_in++,n=255&t.next_in[t.next_in_index++],((t.istate.method<<8)+n)%31!=0){t.istate.mode=13,t.msg="incorrect header check",t.istate.marker=5;break}if(0==(32&n)){t.istate.mode=7;break}t.istate.mode=2;case 2:if(0==t.avail_in)return i;i=e,t.avail_in--,t.total_in++,t.istate.need=(255&t.next_in[t.next_in_index++])<<24&4278190080,t.istate.mode=3;case 3:if(0==t.avail_in)return i;i=e,t.avail_in--,t.total_in++,t.istate.need+=(255&t.next_in[t.next_in_index++])<<16&16711680,t.istate.mode=4;case 4:if(0==t.avail_in)return i;i=e,t.avail_in--,t.total_in++,t.istate.need+=(255&t.next_in[t.next_in_index++])<<8&65280,t.istate.mode=5;case 5:return 0==t.avail_in?i:(i=e,t.avail_in--,t.total_in++,t.istate.need+=255&t.next_in[t.next_in_index++],t.adler=t.istate.need,t.istate.mode=6,2);case 6:return t.istate.mode=13,t.msg="need dictionary",t.istate.marker=0,-2;case 7:if(-3==(i=t.istate.blocks.proc(t,i))){t.istate.mode=13,t.istate.marker=0;break}if(i==f&&(i=e),i!=p)return i;if(i=e,t.istate.blocks.reset(t,t.istate.was),0!=t.istate.nowrap){t.istate.mode=12;break}t.istate.mode=8;case 8:if(0==t.avail_in)return i;i=e,t.avail_in--,t.total_in++,t.istate.need=(255&t.next_in[t.next_in_index++])<<24&4278190080,t.istate.mode=9;case 9:if(0==t.avail_in)return i;i=e,t.avail_in--,t.total_in++,t.istate.need+=(255&t.next_in[t.next_in_index++])<<16&16711680,t.istate.mode=10;case 10:if(0==t.avail_in)return i;i=e,t.avail_in--,t.total_in++,t.istate.need+=(255&t.next_in[t.next_in_index++])<<8&65280,t.istate.mode=11;case 11:if(0==t.avail_in)return i;if(i=e,t.avail_in--,t.total_in++,t.istate.need+=255&t.next_in[t.next_in_index++],t.istate.was[0]!=t.istate.need){t.istate.mode=13,t.msg="incorrect data check",t.istate.marker=5;break}t.istate.mode=12;case 12:return p;case 13:return-3;default:return-2}},e.prototype.inflateSetDictionary=function(t,e,i){var n=0,r=i;return null==t||null==t.istate||6!=t.istate.mode?-2:t._adler.adler32(1,e,0,i)!=t.adler?-3:(t.adler=t._adler.adler32(0,null,0,0),r>=1<<t.istate.wbits&&(r=(1<<t.istate.wbits)-1,n=i-r),t.istate.blocks.set_dictionary(e,n,r),t.istate.mode=7,f)};var T=[0,0,255,255];e.prototype.inflateSync=function(t){var e,i,n,r,a;if(null==t||null==t.istate)return-2;if(13!=t.istate.mode&&(t.istate.mode=13,t.istate.marker=0),0==(e=t.avail_in))return g;for(i=t.next_in_index,n=t.istate.marker;0!=e&&n<4;)t.next_in[i]==T[n]?n++:n=0!=t.next_in[i]?0:4-n,i++,e--;return t.total_in+=i-t.next_in_index,t.next_in_index=i,t.avail_in=e,t.istate.marker=n,4!=n?-3:(r=t.total_in,a=t.total_out,this.inflateReset(t),t.total_in=r,t.total_out=a,t.istate.mode=7,f)},e.prototype.inflateSyncPoint=function(t){return null==t||null==t.istate||null==t.istate.blocks?-2:t.istate.blocks.sync_point()};var A=[16,17,18,0,8,7,9,6,10,5,11,4,12,3,13,2,14,1,15];i.prototype.reset=function(t,e){e&&(e[0]=this.check),6==this.mode&&this.codes.free(t),this.mode=v,this.bitk=0,this.bitb=0,this.read=this.write=0,this.checkfn&&(t.adler=this.check=t._adler.adler32(0,null,0,0))},i.prototype.proc=function(t,e){var i,n,r,s,l,u,c;for(s=t.next_in_index,l=t.avail_in,n=this.bitb,r=this.bitk,u=this.write,c=u<this.read?this.read-u-1:this.end-u;;)switch(this.mode){case v:for(;r<3;){if(0==l)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);e=f,l--,n|=(255&t.next_in[s++])<<r,r+=8}switch(i=7&n,this.last=1&i,i>>>1){case 0:n>>>=3,r-=3,i=7&r,n>>>=i,r-=i,this.mode=1;break;case 1:var h=new Int32Array(1),d=new Int32Array(1),g=[],_=[];a(h,d,g,_,t),this.codes.init(h[0],d[0],g[0],0,_[0],0,t),n>>>=3,r-=3,this.mode=6;break;case 2:n>>>=3,r-=3,this.mode=3;break;case 3:return n>>>=3,r-=3,this.mode=13,t.msg="invalid block type",e=-3,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e)}break;case 1:for(;r<32;){if(0==l)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);e=f,l--,n|=(255&t.next_in[s++])<<r,r+=8}if((~n>>>16&65535)!=(65535&n))return this.mode=13,t.msg="invalid stored block lengths",e=-3,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);this.left=65535&n,n=r=0,this.mode=0!=this.left?2:0!=this.last?7:v;break;case 2:if(0==l)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,write=u,this.inflate_flush(t,e);if(0==c&&(u==end&&0!=read&&(u=0,c=u<this.read?this.read-u-1:this.end-u),0==c&&(this.write=u,e=this.inflate_flush(t,e),u=this.write,c=u<this.read?this.read-u-1:this.end-u,u==this.end&&0!=this.read&&(u=0,c=u<this.read?this.read-u-1:this.end-u),0==c)))return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);if(e=f,i=this.left,i>l&&(i=l),i>c&&(i=c),o(t.next_in,s,this.window,u,i),s+=i,l-=i,u+=i,c-=i,0!=(this.left-=i))break;this.mode=0!=this.last?7:v;break;case 3:for(;r<14;){if(0==l)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);e=f,l--,n|=(255&t.next_in[s++])<<r,r+=8}if(this.table=i=16383&n,(31&i)>29||(i>>5&31)>29)return this.mode=9,t.msg="too many length or distance symbols",e=-3,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);if(i=258+(31&i)+(i>>5&31),null==this.blens||this.blens.length<i)this.blens=new Int32Array(i);else for(var y=0;y<i;y++)this.blens[y]=0;n>>>=14,r-=14,this.index=0,mode=4;case 4:for(;this.index<4+(this.table>>>10);){for(;r<3;){if(0==l)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);e=f,l--,n|=(255&t.next_in[s++])<<r,r+=8}this.blens[A[this.index++]]=7&n,n>>>=3,r-=3}for(;this.index<19;)this.blens[A[this.index++]]=0;if(this.bb[0]=7,(i=this.inftree.inflate_trees_bits(this.blens,this.bb,this.tb,this.hufts,t))!=f)return e=i,-3==e&&(this.blens=null,this.mode=9),this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,write=u,this.inflate_flush(t,e);this.index=0,this.mode=5;case 5:for(;;){if(i=this.table,!(this.index<258+(31&i)+(i>>5&31)))break;var y,b,w;for(i=this.bb[0];r<i;){if(0==l)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);e=f,l--,n|=(255&t.next_in[s++])<<r,r+=8}if(i=this.hufts[3*(this.tb[0]+(n&m[i]))+1],(w=this.hufts[3*(this.tb[0]+(n&m[i]))+2])<16)n>>>=i,r-=i,this.blens[this.index++]=w;else{for(y=18==w?7:w-14,b=18==w?11:3;r<i+y;){if(0==l)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);e=f,l--,n|=(255&t.next_in[s++])<<r,r+=8}if(n>>>=i,r-=i,b+=n&m[y],n>>>=y,r-=y,y=this.index,i=this.table,y+b>258+(31&i)+(i>>5&31)||16==w&&y<1)return this.blens=null,this.mode=9,t.msg="invalid bit length repeat",e=-3,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);w=16==w?this.blens[y-1]:0;do{this.blens[y++]=w}while(0!=--b);this.index=y}}this.tb[0]=-1;var h=new Int32Array(1),d=new Int32Array(1),g=new Int32Array(1),_=new Int32Array(1);if(h[0]=9,d[0]=6,i=this.table,(i=this.inftree.inflate_trees_dynamic(257+(31&i),1+(i>>5&31),this.blens,h,d,g,_,this.hufts,t))!=f)return-3==i&&(this.blens=null,this.mode=13),e=i,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);this.codes.init(h[0],d[0],this.hufts,g[0],this.hufts,_[0],t),this.mode=6;case 6:if(this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,(e=this.codes.proc(this,t,e))!=p)return this.inflate_flush(t,e);if(e=f,this.codes.free(t),s=t.next_in_index,l=t.avail_in,n=this.bitb,r=this.bitk,u=this.write,c=u<this.read?this.read-u-1:this.end-u,0==this.last){this.mode=v;break}this.mode=7;case 7:if(this.write=u,e=this.inflate_flush(t,e),u=this.write,c=u<this.read?this.read-u-1:this.end-u,this.read!=this.write)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);mode=12;case 8:return e=p,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);case 9:return e=-3,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);default:return e=-2,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e)}},i.prototype.free=function(t){this.reset(t,null),this.window=null,this.hufts=null},i.prototype.set_dictionary=function(t,e,i){o(t,e,window,0,i),this.read=this.write=i},i.prototype.sync_point=function(){return 1==this.mode},i.prototype.inflate_flush=function(t,e){var i,n,r;return n=t.next_out_index,r=this.read,i=(r<=this.write?this.write:this.end)-r,i>t.avail_out&&(i=t.avail_out),0!=i&&e==g&&(e=f),t.avail_out-=i,t.total_out+=i,null!=this.checkfn&&(t.adler=this.check=t._adler.adler32(this.check,this.window,r,i)),o(this.window,r,t.next_out,n,i),n+=i,r+=i,r==this.end&&(r=0,this.write==this.end&&(this.write=0),i=this.write-r,i>t.avail_out&&(i=t.avail_out),0!=i&&e==g&&(e=f),t.avail_out-=i,t.total_out+=i,null!=this.checkfn&&(t.adler=this.check=t._adler.adler32(this.check,this.window,r,i)),o(this.window,r,t.next_out,n,i),n+=i,r+=i),t.next_out_index=n,this.read=r,e};n.prototype.init=function(t,e,i,n,r,a,o){this.mode=0,this.lbits=t,this.dbits=e,this.ltree=i,this.ltree_index=n,this.dtree=r,this.dtree_index=a,this.tree=null},n.prototype.proc=function(t,e,i){var n,r,a,o,s,l,u,c=0,h=0,d=0;for(d=e.next_in_index,o=e.avail_in,c=t.bitb,h=t.bitk,s=t.write,l=s<t.read?t.read-s-1:t.end-s;;)switch(this.mode){case 0:if(l>=258&&o>=10&&(t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,i=this.inflate_fast(this.lbits,this.dbits,this.ltree,this.ltree_index,this.dtree,this.dtree_index,t,e),d=e.next_in_index,o=e.avail_in,c=t.bitb,h=t.bitk,s=t.write,l=s<t.read?t.read-s-1:t.end-s,i!=f)){this.mode=i==p?7:9;break}this.need=this.lbits,this.tree=this.ltree,this.tree_index=this.ltree_index,this.mode=1;case 1:for(n=this.need;h<n;){if(0==o)return t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);i=f,o--,c|=(255&e.next_in[d++])<<h,h+=8}if(r=3*(this.tree_index+(c&m[n])),c>>>=this.tree[r+1],h-=this.tree[r+1],0==(a=this.tree[r])){this.lit=this.tree[r+2],this.mode=6;break}if(0!=(16&a)){this.get=15&a,this.len=this.tree[r+2],this.mode=2;break}if(0==(64&a)){this.need=a,this.tree_index=r/3+this.tree[r+2];break}if(0!=(32&a)){this.mode=7;break}return this.mode=9,e.msg="invalid literal/length code",i=-3,t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);case 2:for(n=this.get;h<n;){if(0==o)return t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);i=f,o--,c|=(255&e.next_in[d++])<<h,h+=8}this.len+=c&m[n],c>>=n,h-=n,this.need=this.dbits,this.tree=this.dtree,this.tree_index=this.dtree_index,this.mode=3;case 3:for(n=this.need;h<n;){if(0==o)return t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);i=f,o--,c|=(255&e.next_in[d++])<<h,h+=8}if(r=3*(this.tree_index+(c&m[n])),c>>=this.tree[r+1],h-=this.tree[r+1],0!=(16&(a=this.tree[r]))){this.get=15&a,this.dist=this.tree[r+2],this.mode=4;break}if(0==(64&a)){this.need=a,this.tree_index=r/3+this.tree[r+2];break}return this.mode=9,e.msg="invalid distance code",i=-3,t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);case 4:for(n=this.get;h<n;){if(0==o)return t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);i=f,o--,c|=(255&e.next_in[d++])<<h,h+=8}this.dist+=c&m[n],c>>=n,h-=n,this.mode=5;case 5:for(u=s-this.dist;u<0;)u+=t.end;for(;0!=this.len;){if(0==l&&(s==t.end&&0!=t.read&&(s=0,l=s<t.read?t.read-s-1:t.end-s),0==l&&(t.write=s,i=t.inflate_flush(e,i),s=t.write,l=s<t.read?t.read-s-1:t.end-s,s==t.end&&0!=t.read&&(s=0,l=s<t.read?t.read-s-1:t.end-s),0==l)))return t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);t.window[s++]=t.window[u++],l--,u==t.end&&(u=0),this.len--}this.mode=0;break;case 6:if(0==l&&(s==t.end&&0!=t.read&&(s=0,l=s<t.read?t.read-s-1:t.end-s),0==l&&(t.write=s,i=t.inflate_flush(e,i),s=t.write,l=s<t.read?t.read-s-1:t.end-s,s==t.end&&0!=t.read&&(s=0,l=s<t.read?t.read-s-1:t.end-s),0==l)))return t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);i=f,t.window[s++]=this.lit,l--,this.mode=0;break;case 7:if(h>7&&(h-=8,o++,d--),t.write=s,i=t.inflate_flush(e,i),s=t.write,l=s<t.read?t.read-s-1:t.end-s,t.read!=t.write)return t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);this.mode=8;case 8:return i=p,t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);case 9:return i=-3,t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);default:return i=-2,t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i)}},n.prototype.free=function(t){},n.prototype.inflate_fast=function(t,e,i,n,r,a,s,l){var u,c,h,d,g,v,_,y,b,w,x,C,k,S,T,A;_=l.next_in_index,y=l.avail_in,g=s.bitb,v=s.bitk,b=s.write,w=b<s.read?s.read-b-1:s.end-b,x=m[t],C=m[e];do{for(;v<20;)y--,g|=(255&l.next_in[_++])<<v,v+=8;if(u=g&x,c=i,h=n,A=3*(h+u),0!=(d=c[A]))for(;;){if(g>>=c[A+1],v-=c[A+1],0!=(16&d)){for(d&=15,k=c[A+2]+(g&m[d]),g>>=d,v-=d;v<15;)y--,g|=(255&l.next_in[_++])<<v,v+=8;for(u=g&C,c=r,h=a,A=3*(h+u),d=c[A];;){if(g>>=c[A+1],v-=c[A+1],0!=(16&d)){for(d&=15;v<d;)y--,g|=(255&l.next_in[_++])<<v,v+=8;if(S=c[A+2]+(g&m[d]),g>>=d,v-=d,w-=k,b>=S)T=b-S,s.window[b++]=s.window[T++],s.window[b++]=s.window[T++],k-=2;else{T=b-S;do{T+=s.end}while(T<0);if(d=s.end-T,k>d){if(k-=d,b-T>0&&d>b-T)do{s.window[b++]=s.window[T++]}while(0!=--d);else o(s.window,T,s.window,b,d),b+=d,T+=d,d=0;T=0}}do{s.window[b++]=s.window[T++]}while(0!=--k);break}if(0!=(64&d))return l.msg="invalid distance code",k=l.avail_in-y,k=v>>3<k?v>>3:k,y+=k,_-=k,v-=k<<3,s.bitb=g,s.bitk=v,l.avail_in=y,l.total_in+=_-l.next_in_index,l.next_in_index=_,s.write=b,-3;u+=c[A+2],u+=g&m[d],A=3*(h+u),d=c[A]}break}if(0!=(64&d))return 0!=(32&d)?(k=l.avail_in-y,k=v>>3<k?v>>3:k,y+=k,_-=k,v-=k<<3,s.bitb=g,s.bitk=v,l.avail_in=y,l.total_in+=_-l.next_in_index,l.next_in_index=_,s.write=b,p):(l.msg="invalid literal/length code",k=l.avail_in-y,k=v>>3<k?v>>3:k,y+=k,_-=k,v-=k<<3,s.bitb=g,s.bitk=v,l.avail_in=y,l.total_in+=_-l.next_in_index,l.next_in_index=_,s.write=b,-3);if(u+=c[A+2],u+=g&m[d],A=3*(h+u),0==(d=c[A])){g>>=c[A+1],v-=c[A+1],s.window[b++]=c[A+2],w--;break}}else g>>=c[A+1],v-=c[A+1],s.window[b++]=c[A+2],w--}while(w>=258&&y>=10);return k=l.avail_in-y,k=v>>3<k?v>>3:k,y+=k,_-=k,v-=k<<3,s.bitb=g,s.bitk=v,l.avail_in=y,l.total_in+=_-l.next_in_index,l.next_in_index=_,s.write=b,f},r.prototype.huft_build=function(t,e,i,n,r,a,s,l,u,c,d){var p,m,v,_,y,b,w,x,C,k,S,T,A,M,E;k=0,y=i;do{this.c[t[e+k]]++,k++,y--}while(0!=y);if(this.c[0]==i)return s[0]=-1,l[0]=0,f;for(x=l[0],b=1;b<=15&&0==this.c[b];b++);for(w=b,x<b&&(x=b),y=15;0!=y&&0==this.c[y];y--);for(v=y,x>y&&(x=y),l[0]=x,M=1<<b;b<y;b++,M<<=1)if((M-=this.c[b])<0)return-3;if((M-=this.c[y])<0)return-3;for(this.c[y]+=M,this.x[1]=b=0,k=1,A=2;0!=--y;)this.x[A]=b+=this.c[k],A++,k++;y=0,k=0;do{0!=(b=t[e+k])&&(this.v[this.x[b]++]=y),k++}while(++y<i);for(i=this.x[v],this.x[0]=y=0,k=0,_=-1,T=-x,this.u[0]=0,S=0,E=0;w<=v;w++)for(p=this.c[w];0!=p--;){for(;w>T+x;){if(_++,T+=x,E=v-T,E=E>x?x:E,(m=1<<(b=w-T))>p+1&&(m-=p+1,A=w,b<E))for(;++b<E&&!((m<<=1)<=this.c[++A]);)m-=this.c[A];if(E=1<<b,this.hn[0]+E>h)return-3;this.u[_]=S=this.hn[0],this.hn[0]+=E,0!=_?(this.x[_]=y,this.r[0]=b,this.r[1]=x,b=y>>>T-x,this.r[2]=S-this.u[_-1]-b,o(this.r,0,u,3*(this.u[_-1]+b),3)):s[0]=S}for(this.r[1]=w-T,k>=i?this.r[0]=192:d[k]<n?(this.r[0]=this.v[k]<256?0:96,this.r[2]=this.v[k++]):(this.r[0]=a[this.v[k]-n]+16+64,this.r[2]=r[this.v[k++]-n]),m=1<<w-T,b=y>>>T;b<E;b+=m)o(this.r,0,u,3*(S+b),3);for(b=1<<w-1;0!=(y&b);b>>>=1)y^=b;for(y^=b,C=(1<<T)-1;(y&C)!=this.x[_];)_--,T-=x,C=(1<<T)-1}return 0!=M&&1!=v?g:f},r.prototype.inflate_trees_bits=function(t,e,i,n,r){var a;return this.initWorkArea(19),this.hn[0]=0,a=this.huft_build(t,0,19,19,null,null,i,e,n,this.hn,this.v),-3==a?r.msg="oversubscribed dynamic bit lengths tree":a!=g&&0!=e[0]||(r.msg="incomplete dynamic bit lengths tree",a=-3),a},r.prototype.inflate_trees_dynamic=function(t,e,i,n,r,a,o,s,l){var u;return this.initWorkArea(288),this.hn[0]=0,(u=this.huft_build(i,0,t,257,x,C,a,n,s,this.hn,this.v))!=f||0==n[0]?(-3==u?l.msg="oversubscribed literal/length tree":-4!=u&&(l.msg="incomplete literal/length tree",u=-3),u):(this.initWorkArea(288),u=this.huft_build(i,t,e,0,k,S,o,r,s,this.hn,this.v),u!=f||0==r[0]&&t>257?(-3==u?l.msg="oversubscribed distance tree":u==g?(l.msg="incomplete distance tree",u=-3):-4!=u&&(l.msg="empty distance tree with lengths",u=-3),u):f)},r.prototype.initWorkArea=function(t){null==this.hn&&(this.hn=new Int32Array(1),this.v=new Int32Array(t),this.c=new Int32Array(16),this.r=new Int32Array(3),this.u=new Int32Array(15),this.x=new Int32Array(16)),this.v.length<t&&(this.v=new Int32Array(t));for(var e=0;e<t;e++)this.v[e]=0;for(var e=0;e<16;e++)this.c[e]=0;for(var e=0;e<3;e++)this.r[e]=0;o(this.c,0,this.u,0,15),o(this.c,0,this.x,0,16)};var M=new Uint8Array(1),E="function"==typeof M.subarray;return{inflateBuffer:u,arrayCopy:o}}.apply(e,n))&&(t.exports=r)},function(t,e,i){(function(n){var r,a,o;!function(n,s){a=[i(0)],r=s,void 0!==(o="function"==typeof r?r.apply(e,a):r)&&(t.exports=o)}(0,function(t){var e=t.ajaxSettings;e.responseFields.native="responseNative",e.converters["* native"]=!0;var i={},r=0,a={0:200,1223:204},o={},s=n.ajaxSettings.xhr();window.ActiveXObject&&t(window).on("unload",function(){for(var t in o)o[t]()}),i.cors=!!s&&"withCredentials"in s,i.ajax=s=!!s,t.ajaxTransport("native",function(t){var e;if(i.cors||s&&!t.crossDomain)return{send:function(i,n){var s,l=t.xhr(),u=++r,c={};if(l.open(t.type,t.url,t.async,t.username,t.password),t.xhrFields)for(s in t.xhrFields)l[s]=t.xhrFields[s];t.mimeType&&l.overrideMimeType&&l.overrideMimeType(t.mimeType),t.crossDomain||i["X-Requested-With"]||(i["X-Requested-With"]="XMLHttpRequest");for(s in i)l.setRequestHeader(s,i[s]);e=function(t){return function(){e&&(delete o[u],e=l.onload=l.onerror=null,"abort"===t?l.abort():"error"===t?n(l.status,l.statusText):(l.response&&(c.native=l.response),n(a[l.status]||l.status,l.statusText,c,l.getAllResponseHeaders())))}},l.onload=e(),l.onerror=e("error"),e=o[u]=e("abort");try{l.send(t.hasContent&&t.data||null)}catch(t){if(e)throw t}},abort:function(){e&&e()}}}),t.getNative=function(e,i){return t.ajax({dataType:"native",url:e,xhrFields:{responseType:"arraybuffer"},success:i})}})}).call(e,i(0))},function(t,e,i){"use strict";(function(t,n,r){function a(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var o=i(4),s=a(o),l=i(3),u=a(l),c=t.View.extend(s.default.LoggableMixin).extend({_logNamespace:"user",options:{warnAtPercent:85,errorAtPercent:100},initialize:function(t){this.log(this+".initialize:",t),n.extend(this.options,t),this.listenTo(this.model,"change:quota_percent change:total_disk_usage",this.render)},update:function(t){return this.log(this+" updating user data...",t),this.model.loadFromApi(this.model.get("id"),t),this},isOverQuota:function(){return null!==this.model.get("quota_percent")&&this.model.get("quota_percent")>=this.options.errorAtPercent},_render_quota:function(){var t=this.model.toJSON(),e=t.quota_percent,i=r(this._templateQuotaMeter(t)),n=i.find(".progress-bar");return this.isOverQuota()?(n.attr("class","progress-bar progress-bar-danger"),i.find(".quota-meter-text").css("color","white"),this.trigger("quota:over",t)):e>=this.options.warnAtPercent?(n.attr("class","progress-bar progress-bar-warning"),this.trigger("quota:under quota:under:approaching",t)):(n.attr("class","progress-bar progress-bar-success"),this.trigger("quota:under quota:under:ok",t)),i},_render_usage:function(){var t=r(this._templateUsage(this.model.toJSON()));return this.log(this+".rendering usage:",t),t},render:function(){var t=null;return this.log(this+".model.quota_percent:",this.model.get("quota_percent")),t=null===this.model.get("quota_percent")||void 0===this.model.get("quota_percent")?this._render_usage():this._render_quota(),this.$el.html(t),this.$el.find(".quota-meter-text").tooltip(),this},_templateQuotaMeter:function(t){return['<div id="quota-meter" class="quota-meter progress">','<div class="progress-bar" style="width: ',t.quota_percent,'%"></div>','<div class="quota-meter-text" data-placement="left" style="top: 6px"',t.nice_total_disk_usage?' title="Using '+t.nice_total_disk_usage+'.  This value is recalculated when you log out.">':">",(0,u.default)("Using")," ",t.quota_percent,"%","</div>","</div>"].join("")},_templateUsage:function(t){return['<div id="quota-meter" class="quota-meter" style="background-color: transparent">','<div class="quota-meter-text" data-placement="left" data-original-title="This value is recalculated when you log out." style="top: 6px; color: white">',t.nice_total_disk_usage?(0,u.default)("Using ")+t.nice_total_disk_usage:"","</div>","</div>"].join("")},toString:function(){return"UserQuotaMeter("+this.model+")"}});e.default={UserQuotaMeter:c}}).call(e,i(2),i(1),i(0))}]);
\ No newline at end of file
diff --git a/static/scripts/galaxy.library.js b/static/scripts/galaxy.library.js
index f52537000a6..aca8dc9e07c 100644
--- a/static/scripts/galaxy.library.js
+++ b/static/scripts/galaxy.library.js
@@ -1 +1 @@
-define("galaxy.library",["exports","utils/utils","libs/toastr","mvc/base-mvc","mvc/library/library-model","mvc/library/library-folderlist-view","mvc/library/library-librarylist-view","mvc/library/library-librarytoolbar-view","mvc/library/library-foldertoolbar-view","mvc/library/library-dataset-view","mvc/library/library-library-view","mvc/library/library-folder-view"],function(e,r,i,a,l,o,t,s,d,n,b,y){"use strict";function w(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(e,"__esModule",{value:!0});w(r);var u=w(i),f=w(a),c=(w(l),w(o)),_=w(t),V=w(s),x=w(d),p=w(n),g=w(b),G=w(y),h=Backbone.Router.extend({initialize:function(){this.routesHit=0,Backbone.history.on("route",function(){this.routesHit++},this),this.bind("route",this.trackPageview)},routes:{"":"libraries","page/:show_page":"libraries_page","library/:library_id/permissions":"library_permissions","folders/:folder_id/permissions":"folder_permissions","folders/:id":"folder_content","folders/:id/page/:show_page":"folder_page","folders/:folder_id/datasets/:dataset_id":"dataset_detail","folders/:folder_id/datasets/:dataset_id/permissions":"dataset_permissions","folders/:folder_id/datasets/:dataset_id/versions/:ldda_id":"dataset_version","folders/:folder_id/download/:format":"download","folders/:folder_id/import/:source":"import_datasets"},back:function(){this.routesHit>1?window.history.back():this.navigate("#",{trigger:!0,replace:!0})},trackPageview:function(){var e=Backbone.history.getFragment();/^\//.test(e)||""==e||(e="/"+e),"undefined"!=typeof ga&&ga("send","pageview",Galaxy.root+"library/list"+e)}}),m=f.default.SessionStorageModel.extend({defaults:{with_deleted:!1,without_restricted:!1,sort_order:"asc",sort_by:"name",library_page_size:20,folder_page_size:15}}),v=Backbone.View.extend({libraryToolbarView:null,libraryListView:null,library_router:null,libraryView:null,folderToolbarView:null,folderListView:null,datasetView:null,initialize:function(){window.Galaxy.config.ga_code&&(!function(e,r,i,a,l,o,t){e.GoogleAnalyticsObject=l,e[l]=e[l]||function(){(e[l].q=e[l].q||[]).push(arguments)},e[l].l=1*new Date,o=r.createElement(i),t=r.getElementsByTagName(i)[0],o.async=1,o.src="//www.google-analytics.com/analytics.js",t.parentNode.insertBefore(o,t)}(window,document,"script",0,"ga"),ga("create",window.Galaxy.config.ga_code,"auto"),ga("send","pageview")),Galaxy.libraries=this,this.preferences=new m({id:"global-lib-prefs"}),this.library_router=new h,this.library_router.on("route:libraries",function(){Galaxy.libraries.libraryToolbarView&&Galaxy.libraries.libraryToolbarView.$el.unbind("click"),Galaxy.libraries.libraryToolbarView=new V.default.LibraryToolbarView,Galaxy.libraries.libraryListView=new _.default.LibraryListView}),this.library_router.on("route:libraries_page",function(e){null===Galaxy.libraries.libraryToolbarView?(Galaxy.libraries.libraryToolbarView=new V.default.LibraryToolbarView,Galaxy.libraries.libraryListView=new _.default.LibraryListView({show_page:e})):Galaxy.libraries.libraryListView.render({show_page:e})}),this.library_router.on("route:folder_content",function(e){Galaxy.libraries.folderToolbarView&&Galaxy.libraries.folderToolbarView.$el.unbind("click"),Galaxy.libraries.folderToolbarView=new x.default.FolderToolbarView({id:e}),Galaxy.libraries.folderListView=new c.default.FolderListView({id:e})}),this.library_router.on("route:folder_page",function(e,r){null===Galaxy.libraries.folderToolbarView?(Galaxy.libraries.folderToolbarView=new x.default.FolderToolbarView({id:e}),Galaxy.libraries.folderListView=new c.default.FolderListView({id:e,show_page:r})):Galaxy.libraries.folderListView.render({id:e,show_page:parseInt(r)})}),this.library_router.on("route:download",function(e,r){0===$("#folder_list_body").find(":checked").length?(u.default.info("You must select at least one dataset to download"),Galaxy.libraries.library_router.navigate("folders/"+e,{trigger:!0,replace:!0})):(Galaxy.libraries.folderToolbarView.download(e,r),Galaxy.libraries.library_router.navigate("folders/"+e,{trigger:!1,replace:!0}))}),this.library_router.on("route:dataset_detail",function(e,r){Galaxy.libraries.datasetView&&Galaxy.libraries.datasetView.$el.unbind("click"),Galaxy.libraries.datasetView=new p.default.LibraryDatasetView({id:r,show_version:!1,show_permissions:!1})}),this.library_router.on("route:dataset_version",function(e,r,i){Galaxy.libraries.datasetView&&Galaxy.libraries.datasetView.$el.unbind("click"),Galaxy.libraries.datasetView=new p.default.LibraryDatasetView({id:r,ldda_id:i,show_version:!0})}),this.library_router.on("route:dataset_permissions",function(e,r){Galaxy.libraries.datasetView&&Galaxy.libraries.datasetView.$el.unbind("click"),Galaxy.libraries.datasetView=new p.default.LibraryDatasetView({id:r,show_permissions:!0})}),this.library_router.on("route:library_permissions",function(e){Galaxy.libraries.libraryView&&Galaxy.libraries.libraryView.$el.unbind("click"),Galaxy.libraries.libraryView=new g.default.LibraryView({id:e,show_permissions:!0})}),this.library_router.on("route:folder_permissions",function(e){Galaxy.libraries.folderView&&Galaxy.libraries.folderView.$el.unbind("click"),Galaxy.libraries.folderView=new G.default.FolderView({id:e,show_permissions:!0})}),this.library_router.on("route:import_datasets",function(e,r){Galaxy.libraries.folderToolbarView&&Galaxy.libraries.folderListView?Galaxy.libraries.folderToolbarView.showImportModal({source:r}):(Galaxy.libraries.folderToolbarView=new x.default.FolderToolbarView({id:e}),Galaxy.libraries.folderListView=new c.default.FolderListView({id:e}),Galaxy.libraries.folderToolbarView.showImportModal({source:r}))}),Backbone.history.start({pushState:!1})}});e.default={GalaxyApp:v}});
\ No newline at end of file
+define("galaxy.library",["exports","utils/utils","libs/toastr","mvc/base-mvc","mvc/library/library-model","mvc/library/library-folderlist-view","mvc/library/library-librarylist-view","mvc/library/library-librarytoolbar-view","mvc/library/library-foldertoolbar-view","mvc/library/library-dataset-view","mvc/library/library-library-view","mvc/library/library-folder-view"],function(e,r,i,a,l,o,t,s,d,n,b,y){"use strict";function w(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(e,"__esModule",{value:!0});w(r);var u=w(i),f=w(a),c=(w(l),w(o)),_=w(t),V=w(s),x=w(d),p=w(n),g=w(b),G=w(y),h=Backbone.Router.extend({initialize:function(){this.routesHit=0,Backbone.history.on("route",function(){this.routesHit++},this),this.bind("route",this.trackPageview)},routes:{"":"libraries","page/:show_page":"libraries_page","library/:library_id/permissions":"library_permissions","folders/:folder_id/permissions":"folder_permissions","folders/:id":"folder_content","folders/:id/page/:show_page":"folder_page","folders/:folder_id/datasets/:dataset_id":"dataset_detail","folders/:folder_id/datasets/:dataset_id/permissions":"dataset_permissions","folders/:folder_id/datasets/:dataset_id/versions/:ldda_id":"dataset_version","folders/:folder_id/download/:format":"download","folders/:folder_id/import/:source":"import_datasets"},back:function(){this.routesHit>1?window.history.back():this.navigate("#",{trigger:!0,replace:!0})},trackPageview:function(){var e=Backbone.history.getFragment();/^\//.test(e)||""==e||(e="/"+e),"undefined"!=typeof ga&&ga("send","pageview",Galaxy.root+"library/list"+e)}}),m=f.default.SessionStorageModel.extend({defaults:{with_deleted:!1,without_restricted:!1,sort_order:"asc",sort_by:"name",library_page_size:20,folder_page_size:15}}),v=Backbone.View.extend({libraryToolbarView:null,libraryListView:null,library_router:null,libraryView:null,folderToolbarView:null,folderListView:null,datasetView:null,initialize:function(){window.Galaxy.config.ga_code&&(!function(e,r,i,a,l,o,t){e.GoogleAnalyticsObject=l,e[l]=e[l]||function(){(e[l].q=e[l].q||[]).push(arguments)},e[l].l=1*new Date,o=r.createElement(i),t=r.getElementsByTagName(i)[0],o.async=1,o.src="//www.google-analytics.com/analytics.js",t.parentNode.insertBefore(o,t)}(window,document,"script",0,"ga"),ga("create",window.Galaxy.config.ga_code,"auto"),ga("send","pageview")),Galaxy.libraries=this,this.preferences=new m({id:"global-lib-prefs"}),this.library_router=new h,this.library_router.on("route:libraries",function(){Galaxy.libraries.libraryToolbarView&&Galaxy.libraries.libraryToolbarView.$el.unbind("click"),Galaxy.libraries.libraryToolbarView=new V.default.LibraryToolbarView,Galaxy.libraries.libraryListView=new _.default.LibraryListView}),this.library_router.on("route:libraries_page",function(e){null===Galaxy.libraries.libraryToolbarView?(Galaxy.libraries.libraryToolbarView=new V.default.LibraryToolbarView,Galaxy.libraries.libraryListView=new _.default.LibraryListView({show_page:e})):Galaxy.libraries.libraryListView.render({show_page:e})}),this.library_router.on("route:folder_content",function(e){Galaxy.libraries.folderToolbarView&&Galaxy.libraries.folderToolbarView.$el.unbind("click"),Galaxy.libraries.folderToolbarView=new x.default.FolderToolbarView({id:e}),Galaxy.libraries.folderListView=new c.default.FolderListView({id:e})}),this.library_router.on("route:folder_page",function(e,r){null===Galaxy.libraries.folderToolbarView?(Galaxy.libraries.folderToolbarView=new x.default.FolderToolbarView({id:e}),Galaxy.libraries.folderListView=new c.default.FolderListView({id:e,show_page:r})):Galaxy.libraries.folderListView.render({id:e,show_page:parseInt(r)})}),this.library_router.on("route:download",function(e,r){0===$("#folder_list_body").find(":checked").length?(u.default.info("You must select at least one dataset to download"),Galaxy.libraries.library_router.navigate("folders/"+e,{trigger:!0,replace:!0})):(Galaxy.libraries.folderToolbarView.download(r),Galaxy.libraries.library_router.navigate("folders/"+e,{trigger:!1,replace:!0}))}),this.library_router.on("route:dataset_detail",function(e,r){Galaxy.libraries.datasetView&&Galaxy.libraries.datasetView.$el.unbind("click"),Galaxy.libraries.datasetView=new p.default.LibraryDatasetView({id:r,show_version:!1,show_permissions:!1})}),this.library_router.on("route:dataset_version",function(e,r,i){Galaxy.libraries.datasetView&&Galaxy.libraries.datasetView.$el.unbind("click"),Galaxy.libraries.datasetView=new p.default.LibraryDatasetView({id:r,ldda_id:i,show_version:!0})}),this.library_router.on("route:dataset_permissions",function(e,r){Galaxy.libraries.datasetView&&Galaxy.libraries.datasetView.$el.unbind("click"),Galaxy.libraries.datasetView=new p.default.LibraryDatasetView({id:r,show_permissions:!0})}),this.library_router.on("route:library_permissions",function(e){Galaxy.libraries.libraryView&&Galaxy.libraries.libraryView.$el.unbind("click"),Galaxy.libraries.libraryView=new g.default.LibraryView({id:e,show_permissions:!0})}),this.library_router.on("route:folder_permissions",function(e){Galaxy.libraries.folderView&&Galaxy.libraries.folderView.$el.unbind("click"),Galaxy.libraries.folderView=new G.default.FolderView({id:e,show_permissions:!0})}),this.library_router.on("route:import_datasets",function(e,r){Galaxy.libraries.folderToolbarView&&Galaxy.libraries.folderListView?Galaxy.libraries.folderToolbarView.showImportModal({source:r}):(Galaxy.libraries.folderToolbarView=new x.default.FolderToolbarView({id:e}),Galaxy.libraries.folderListView=new c.default.FolderListView({id:e}),Galaxy.libraries.folderToolbarView.showImportModal({source:r}))}),Backbone.history.start({pushState:!1})}});e.default={GalaxyApp:v}});
\ No newline at end of file
diff --git a/static/scripts/mvc/collection/list-collection-creator.js b/static/scripts/mvc/collection/list-collection-creator.js
index 856a42e5377..34fc15a153d 100644
--- a/static/scripts/mvc/collection/list-collection-creator.js
+++ b/static/scripts/mvc/collection/list-collection-creator.js
@@ -1 +1 @@
-define("mvc/collection/list-collection-creator",["exports","mvc/history/hdca-model","mvc/dataset/states","mvc/base-mvc","mvc/collection/base-creator","mvc/ui/ui-modal","utils/natural-sort","utils/localization","ui/hoverhighlight"],function(e,t,l,n,i,a,s,r){"use strict";function o(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(e,"__esModule",{value:!0});var c=o(t),d=o(l),h=o(n),m=o(i),u=o(a),f=(o(s),o(r)),g=Backbone.View.extend(h.default.LoggableMixin).extend({_logNamespace:"collections",tagName:"li",className:"collection-element",initialize:function(e){this.element=e.element||{},this.selected=e.selected||!1},render:function(){this.dragStartHandler=_.bind(this._dragstart,this),this.dragEndHandler=_.bind(this._dragend,this);var e=this.$el.attr("data-element-id",this.element.id).attr("draggable",!0).html(this.template({element:this.element})).get(0);return e.addEventListener("dragstart",this.dragStartHandler,!1),e.addEventListener("dragend",this.dragEndHandler,!1),this.selected&&this.$el.addClass("selected"),this},template:_.template(['<a class="name" title="',(0,f.default)("Click to rename"),'" href="javascript:void(0)">',"<%- element.name %>","</a>",'<button class="discard btn btn-sm" title="',(0,f.default)("Remove this dataset from the list"),'">',(0,f.default)("Discard"),"</button>"].join("")),select:function(e){this.$el.toggleClass("selected",e),this.trigger("select",{source:this,selected:this.$el.hasClass("selected")})},discard:function(){var e=this,t=this.$el.parent().width();this.$el.animate({"margin-right":t},"fast",function(){e.trigger("discard",{source:e}),e.destroy()})},destroy:function(){this.off(),this.$el.remove()},events:{click:"_click","click .name":"_clickName","click .discard":"_clickDiscard",dragover:"_sendToParent",drop:"_sendToParent"},_click:function(e){e.stopPropagation(),this.select(e)},_clickName:function(e){e.stopPropagation(),e.preventDefault();[(0,f.default)("Enter a new name for the element"),":\n(",(0,f.default)("Note that changing the name here will not rename the dataset"),")"].join("");var t=prompt((0,f.default)("Enter a new name for the element")+":",this.element.name);t&&(this.element.name=t,this.render())},_clickDiscard:function(e){e.stopPropagation(),this.discard()},_dragstart:function(e){e.originalEvent&&(e=e.originalEvent),e.dataTransfer.effectAllowed="move",e.dataTransfer.setData("text/plain",JSON.stringify(this.element)),this.$el.addClass("dragging"),this.$el.parent().trigger("collection-element.dragstart",[this])},_dragend:function(e){this.$el.removeClass("dragging"),this.$el.parent().trigger("collection-element.dragend",[this])},_sendToParent:function(e){this.$el.parent().trigger(e)},toString:function(){return"DatasetCollectionElementView()"}}),p=Backbone.View.extend(h.default.LoggableMixin).extend(m.default.CollectionCreatorMixin).extend({_logNamespace:"collections",elementViewClass:g,collectionClass:c.default.HistoryDatasetCollection,className:"list-collection-creator collection-creator flex-row-container",minElements:1,defaultAttributes:{creationFn:function(){throw new TypeError("no creation fn for creator")},oncreate:function(){},oncancel:function(){},autoscrollDist:24,highlightClr:"rgba( 64, 255, 255, 1.0 )"},footerSettings:{".hide-originals":"hideOriginals"},initialize:function(e){this.metric("ListCollectionCreator.initialize",e);var t=this;_.each(this.defaultAttributes,function(l,n){l=e[n]||l,t[n]=l}),t.initialElements=e.elements||[],this._setUpCommonSettings(e),this._instanceSetUp(),this._elementsSetUp(),this._setUpBehaviors()},_instanceSetUp:function(){this.selectedIds={},this.$dragging=null,this.blocking=!1},_elementsSetUp:function(){this.invalidElements=[],this.workingElements=[],this.elementViews=[],this.workingElements=this.initialElements.slice(0),this._ensureElementIds(),this._validateElements(),this._mangleDuplicateNames(),this._sortElements()},_ensureElementIds:function(){return this.workingElements.forEach(function(e){e.hasOwnProperty("id")||(e.id=_.uniqueId())}),this.workingElements},_validateElements:function(){var e=this;return e.invalidElements=[],this.workingElements=this.workingElements.filter(function(t){var l=e._isElementInvalid(t);return l&&e.invalidElements.push({element:t,text:l}),!l}),this.workingElements},_isElementInvalid:function(e){return"dataset"!==e.history_content_type?(0,f.default)("is not a dataset"):e.state===d.default.OK||_.contains(d.default.NOT_READY_STATES,e.state)?e.deleted||e.purged?(0,f.default)("has been deleted or purged"):null:(0,f.default)("has errored, is paused, or is not accessible")},_mangleDuplicateNames:function(){var e=1,t={};this.workingElements.forEach(function(l){for(var n=l.name;t.hasOwnProperty(n);)if(n=l.name+" ("+e+")",(e+=1)>=900)throw new Error("Safety hit in while loop - thats impressive");l.name=n,t[l.name]=!0})},_sortElements:function(e){},render:function(e,t){return this.workingElements.length<this.minElements?this._renderInvalid(e,t):(this.$el.empty().html(this.templates.main()),this._renderHeader(e),this._renderMiddle(e),this._renderFooter(e),this._addPluginComponents(),this.$(".collection-name").focus(),this.trigger("rendered",this),this)},_renderInvalid:function(e,t){return this.$el.empty().html(this.templates.invalidInitial({problems:this.invalidElements,elements:this.workingElements})),"function"==typeof this.oncancel&&this.$(".cancel-create.btn").show(),this.trigger("rendered",this),this},_renderHeader:function(e,t){var l=this.$(".header").empty().html(this.templates.header()).find(".help-content").prepend($(this.templates.helpContent()));return this.invalidElements.length&&this._invalidElementsAlert(),l},_renderMiddle:function(e,t){var l=this.$(".middle").empty().html(this.templates.middle());return this._renderList(e),l},_addPluginComponents:function(){this.$(".help-content i").hoverhighlight(".collection-creator",this.highlightClr)},_invalidElementsAlert:function(){this._showAlert(this.templates.invalidElements({problems:this.invalidElements}),"alert-warning")},_disableNameAndCreate:function(e){(e=!!_.isUndefined(e)||e)&&(this.$(".collection-name").prop("disabled",!0),this.$(".create-collection").toggleClass("disabled",!0))},$list:function(){return this.$(".collection-elements")},_renderClearSelected:function(){_.size(this.selectedIds)?this.$(".collection-elements-controls > .clear-selected").show():this.$(".collection-elements-controls > .clear-selected").hide()},_renderList:function(e,t){var l=this,n=jQuery("<div/>"),i=l.$list();_.each(this.elementViews,function(e){e.destroy(),l.removeElementView(e)}),l.workingElements.forEach(function(e){var t=l._createElementView(e);n.append(t.$el)}),l._renderClearSelected(),i.empty().append(n.children()),_.invoke(l.elementViews,"render"),i.height()>i.css("max-height")?i.css("border-width","1px 0px 1px 0px"):i.css("border-width","0px")},_createElementView:function(e){var t=new this.elementViewClass({element:e,selected:_.has(this.selectedIds,e.id)});return this.elementViews.push(t),this._listenToElementView(t),t},_listenToElementView:function(e){var t=this;t.listenTo(e,{select:function(e){var l=e.source.element;e.selected?t.selectedIds[l.id]=!0:delete t.selectedIds[l.id],t.trigger("elements:select",e)},discard:function(e){t.trigger("elements:discard",e)}})},addElementView:function(e){},removeElementView:function(e){delete this.selectedIds[e.element.id],this._renderClearSelected(),this.elementViews=_.without(this.elementViews,e),this.stopListening(e)},_renderNoElementsLeft:function(){this._disableNameAndCreate(!0),this.$(".collection-elements").append(this.templates.noElementsLeft())},_elementToJSON:function(e){return e},createList:function(e){if(!this.workingElements.length){var t=(0,f.default)("No valid elements for final list")+". ";return t+='<a class="cancel-create" href="javascript:void(0);">'+(0,f.default)("Cancel")+"</a> ",t+=(0,f.default)("or"),t+=' <a class="reset" href="javascript:void(0);">'+(0,f.default)("start over")+"</a>.",void this._showAlert(t)}var l=this,n=this.workingElements.map(function(e){return l._elementToJSON(e)});return l.blocking=!0,l.creationFn(n,e,l.hideOriginals).always(function(){l.blocking=!1}).fail(function(e,t,n){l.trigger("error",{xhr:e,status:t,message:(0,f.default)("An error occurred while creating this collection")})}).done(function(e,t,n){l.trigger("collection:created",e,t,n),l.metric("collection:created",e),"function"==typeof l.oncreate&&l.oncreate.call(this,e,t,n)})},_setUpBehaviors:function(){return this.on("error",this._errorHandler),this.once("rendered",function(){this.trigger("rendered:initial",this)}),this.on("elements:select",function(e){this._renderClearSelected()}),this.on("elements:discard",function(e){var t=e.source.element;this.removeElementView(e.source),this.workingElements=_.without(this.workingElements,t),this.workingElements.length||this._renderNoElementsLeft()}),this},_errorHandler:function(e){this.error(e);var t=this,l=e.message||(0,f.default)("An error occurred");if(e.xhr){var n=e.xhr,i=e.message;0===n.readyState&&0===n.status?l+=": "+(0,f.default)("Galaxy could not be reached and may be updating.")+(0,f.default)(" Try again in a few minutes."):n.responseJSON?l+=":<br /><pre>"+JSON.stringify(n.responseJSON)+"</pre>":l+=": "+i}t._showAlert(l,"alert-danger")},events:{"click .more-help":"_clickMoreHelp","click .less-help":"_clickLessHelp","click .main-help":"_toggleHelp","click .header .alert button":"_hideAlert","click .reset":"reset","click .clear-selected":"clearSelectedElements","click .collection-elements":"clearSelectedElements","dragover .collection-elements":"_dragoverElements","drop .collection-elements":"_dropElements","collection-element.dragstart .collection-elements":"_elementDragstart","collection-element.dragend   .collection-elements":"_elementDragend","change .collection-name":"_changeName","keydown .collection-name":"_nameCheckForEnter","change .hide-originals":"_changeHideOriginals","click .cancel-create":"_cancelCreate","click .create-collection":"_clickCreate"},reset:function(){this._instanceSetUp(),this._elementsSetUp(),this.render()},clearSelectedElements:function(e){this.$(".collection-elements .collection-element").removeClass("selected"),this.$(".collection-elements-controls > .clear-selected").hide()},_dragoverElements:function(e){e.preventDefault();var t=this.$list();this._checkForAutoscroll(t,e.originalEvent.clientY);var l=this._getNearestElement(e.originalEvent.clientY);this.$(".element-drop-placeholder").remove();var n=$('<div class="element-drop-placeholder"></div>');l.length?l.before(n):t.append(n)},_checkForAutoscroll:function(e,t){var l=e.offset(),n=e.scrollTop(),i=t-l.top,a=l.top+e.outerHeight()-t;i>=0&&i<this.autoscrollDist?e.scrollTop(n-2):a>=0&&a<this.autoscrollDist&&e.scrollTop(n+2)},_getNearestElement:function(e){for(var t=this.$(".collection-elements li.collection-element").toArray(),l=0;l<t.length;l++){var n=$(t[l]),i=n.offset().top,a=Math.floor(n.outerHeight()/2)+4;if(i+a>e&&i-a<e)return n}return $()},_dropElements:function(e){e.originalEvent&&(e=e.originalEvent),e.preventDefault(),e.dataTransfer.dropEffect="move";var t=this._getNearestElement(e.clientY);return t.length?this.$dragging.insertBefore(t):this.$dragging.insertAfter(this.$(".collection-elements .collection-element").last()),this._syncOrderToDom(),!1},_syncOrderToDom:function(){var e=this,t=[];this.$(".collection-elements .collection-element").each(function(){var l=$(this).attr("data-element-id"),n=_.findWhere(e.workingElements,{id:l});n?t.push(n):console.error("missing element: ",l)}),this.workingElements=t,this._renderList()},_elementDragstart:function(e,t){t.select(!0),this.$dragging=this.$(".collection-elements .collection-element.selected")},_elementDragend:function(e,t){$(".element-drop-placeholder").remove(),this.$dragging=null},templates:_.extend({},m.default.CollectionCreatorMixin._creatorTemplates,{header:_.template(['<div class="main-help well clear">','<a class="more-help" href="javascript:void(0);">',(0,f.default)("More help"),"</a>",'<div class="help-content">','<a class="less-help" href="javascript:void(0);">',(0,f.default)("Less"),"</a>","</div>","</div>",'<div class="alert alert-dismissable">','<button type="button" class="close" data-dismiss="alert" ','title="',(0,f.default)("Close and show more help"),'" aria-hidden="true">&times;</button>','<span class="alert-message"></span>',"</div>"].join("")),middle:_.template(['<div class="collection-elements-controls">','<a class="reset" href="javascript:void(0);" ','title="',(0,f.default)("Undo all reordering and discards"),'">',(0,f.default)("Start over"),"</a>",'<a class="clear-selected" href="javascript:void(0);" ','title="',(0,f.default)("De-select all selected datasets"),'">',(0,f.default)("Clear selected"),"</a>","</div>",'<div class="collection-elements scroll-container flex-row">',"</div>"].join("")),footer:_.template(['<div class="attributes clear">','<div class="clear">','<label class="setting-prompt pull-right">',(0,f.default)("Hide original elements"),"?",'<input class="hide-originals pull-right" type="checkbox" />',"</label>","</div>",'<div class="clear">','<input class="collection-name form-control pull-right" ','placeholder="',(0,f.default)("Enter a name for your new collection"),'" />','<div class="collection-name-prompt pull-right">',(0,f.default)("Name"),":</div>","</div>","</div>",'<div class="actions clear vertically-spaced">','<div class="other-options pull-left">','<button class="cancel-create btn" tabindex="-1">',(0,f.default)("Cancel"),"</button>",'<div class="create-other btn-group dropup">','<button class="btn btn-default dropdown-toggle" data-toggle="dropdown">',(0,f.default)("Create a different kind of collection"),' <span class="caret"></span>',"</button>",'<ul class="dropdown-menu" role="menu">','<li><a href="#">',(0,f.default)("Create a <i>single</i> pair"),"</a></li>",'<li><a href="#">',(0,f.default)("Create a list of <i>unpaired</i> datasets"),"</a></li>","</ul>","</div>","</div>",'<div class="main-options pull-right">','<button class="create-collection btn btn-primary">',(0,f.default)("Create list"),"</button>","</div>","</div>"].join("")),helpContent:_.template(["<p>",(0,f.default)(["Collections of datasets are permanent, ordered lists of datasets that can be passed to tools and ","workflows in order to have analyses done on each member of the entire group. This interface allows ","you to create a collection and re-order the final collection."].join("")),"</p>","<ul>","<li>",(0,f.default)(["Rename elements in the list by clicking on ",'<i data-target=".collection-element .name">the existing name</i>.'].join("")),"</li>","<li>",(0,f.default)(["Discard elements from the final created list by clicking on the ",'<i data-target=".collection-element .discard">"Discard"</i> button.'].join("")),"</li>","<li>",(0,f.default)(["Reorder the list by clicking and dragging elements. Select multiple elements by clicking on ",'<i data-target=".collection-element">them</i> and you can then move those selected by dragging the ',"entire group. Deselect them by clicking them again or by clicking the ",'the <i data-target=".clear-selected">"Clear selected"</i> link.'].join("")),"</li>","<li>",(0,f.default)(['Click the <i data-target=".reset">"Start over"</i> link to begin again as if you had just opened ',"the interface."].join("")),"</li>","<li>",(0,f.default)(['Click the <i data-target=".cancel-create">"Cancel"</i> button to exit the interface.'].join("")),"</li>","</ul><br />","<p>",(0,f.default)(['Once your collection is complete, enter a <i data-target=".collection-name">name</i> and ','click <i data-target=".create-collection">"Create list"</i>.'].join("")),"</p>"].join("")),invalidElements:_.template([(0,f.default)("The following selections could not be included due to problems:"),"<ul><% _.each( problems, function( problem ){ %>","<li><b><%- problem.element.name %></b>: <%- problem.text %></li>","<% }); %></ul>"].join("")),noElementsLeft:_.template(['<li class="no-elements-left-message">',(0,f.default)("No elements left! "),(0,f.default)("Would you like to "),'<a class="reset" href="javascript:void(0)">',(0,f.default)("start over"),"</a>?","</li>"].join("")),invalidInitial:_.template(['<div class="header flex-row no-flex">','<div class="alert alert-warning" style="display: block">','<span class="alert-message">',"<% if( _.size( problems ) ){ %>",(0,f.default)("The following selections could not be included due to problems"),":","<ul><% _.each( problems, function( problem ){ %>","<li><b><%- problem.element.name %></b>: <%- problem.text %></li>","<% }); %></ul>","<% } else if( _.size( elements ) < 1 ){ %>",(0,f.default)("No datasets were selected"),".","<% } %>","<br />",(0,f.default)("At least one element is needed for the collection"),". ",(0,f.default)("You may need to "),'<a class="cancel-create" href="javascript:void(0)">',(0,f.default)("cancel"),"</a> ",(0,f.default)("and reselect new elements"),".","</span>","</div>","</div>",'<div class="footer flex-row no-flex">','<div class="actions clear vertically-spaced">','<div class="other-options pull-left">','<button class="cancel-create btn" tabindex="-1">',(0,f.default)("Cancel"),"</button>","</div>","</div>","</div>"].join(""))}),toString:function(){return"ListCollectionCreator"}}),v=function(e,t,l){var n,i=jQuery.Deferred(),a=Galaxy.modal||new u.default.View;return t=_.defaults(t||{},{elements:e,oncancel:function(){a.hide(),i.reject("cancelled")},oncreate:function(e,t){a.hide(),i.resolve(t)}}),n=new l(t),a.show({title:t.title||(0,f.default)("Create a collection"),body:n.$el,width:"80%",height:"100%",closing_events:!0}),n.render(),window._collectionCreator=n,i},b=function(e,t){return t=t||{},t.title=(0,f.default)("Create a collection from a list of datasets"),v(e,t,p)};e.default={DatasetCollectionElementView:g,ListCollectionCreator:p,collectionCreatorModal:v,listCollectionCreatorModal:b,createListCollection:function(e,t){var l=e.toJSON();return b(l,{defaultHideSourceItems:t,creationFn:function(t,l,n){return t=t.map(function(e){return{id:e.id,name:e.name,src:"dataset"===e.history_content_type?"hda":"hdca"}}),e.createHDCA(t,"list",l,n)}})}}});
\ No newline at end of file
+define("mvc/collection/list-collection-creator",["exports","mvc/history/hdca-model","mvc/dataset/states","mvc/base-mvc","mvc/collection/base-creator","mvc/ui/ui-modal","utils/natural-sort","utils/localization","ui/hoverhighlight"],function(e,t,l,n,i,a,s,r){"use strict";function o(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(e,"__esModule",{value:!0});var c=o(t),d=o(l),h=o(n),m=o(i),u=o(a),f=(o(s),o(r)),g=Backbone.View.extend(h.default.LoggableMixin).extend({_logNamespace:"collections",tagName:"li",className:"collection-element",initialize:function(e){this.element=e.element||{},this.selected=e.selected||!1},render:function(){this.dragStartHandler=_.bind(this._dragstart,this),this.dragEndHandler=_.bind(this._dragend,this);var e=this.$el.attr("data-element-id",this.element.id).attr("draggable",!0).html(this.template({element:this.element})).get(0);return e.addEventListener("dragstart",this.dragStartHandler,!1),e.addEventListener("dragend",this.dragEndHandler,!1),this.selected&&this.$el.addClass("selected"),this},template:_.template(['<a class="name" title="',(0,f.default)("Click to rename"),'" href="javascript:void(0)">',"<%- element.name %>","</a>",'<button class="discard btn btn-sm" title="',(0,f.default)("Remove this dataset from the list"),'">',(0,f.default)("Discard"),"</button>"].join("")),select:function(e){this.$el.toggleClass("selected",e),this.trigger("select",{source:this,selected:this.$el.hasClass("selected")})},discard:function(){var e=this,t=this.$el.parent().width();this.$el.animate({"margin-right":t},"fast",function(){e.trigger("discard",{source:e}),e.destroy()})},destroy:function(){this.off(),this.$el.remove()},events:{click:"_click","click .name":"_clickName","click .discard":"_clickDiscard",dragover:"_sendToParent",drop:"_sendToParent"},_click:function(e){e.stopPropagation(),this.select(e)},_clickName:function(e){e.stopPropagation(),e.preventDefault();[(0,f.default)("Enter a new name for the element"),":\n(",(0,f.default)("Note that changing the name here will not rename the dataset"),")"].join("");var t=prompt((0,f.default)("Enter a new name for the element")+":",this.element.name);t&&(this.element.name=t,this.render())},_clickDiscard:function(e){e.stopPropagation(),this.discard()},_dragstart:function(e){e.originalEvent&&(e=e.originalEvent),e.dataTransfer.effectAllowed="move",e.dataTransfer.setData("text/plain",JSON.stringify(this.element)),this.$el.addClass("dragging"),this.$el.parent().trigger("collection-element.dragstart",[this])},_dragend:function(e){this.$el.removeClass("dragging"),this.$el.parent().trigger("collection-element.dragend",[this])},_sendToParent:function(e){this.$el.parent().trigger(e)},toString:function(){return"DatasetCollectionElementView()"}}),p=Backbone.View.extend(h.default.LoggableMixin).extend(m.default.CollectionCreatorMixin).extend({_logNamespace:"collections",elementViewClass:g,collectionClass:c.default.HistoryDatasetCollection,className:"list-collection-creator collection-creator flex-row-container",minElements:1,defaultAttributes:{creationFn:function(){throw new TypeError("no creation fn for creator")},oncreate:function(){},oncancel:function(){},autoscrollDist:24,highlightClr:"rgba( 64, 255, 255, 1.0 )"},footerSettings:{".hide-originals":"hideOriginals"},initialize:function(e){this.metric("ListCollectionCreator.initialize",e);var t=this;_.each(this.defaultAttributes,function(l,n){l=e[n]||l,t[n]=l}),t.initialElements=e.elements||[],this._setUpCommonSettings(e),this._instanceSetUp(),this._elementsSetUp(),this._setUpBehaviors()},_instanceSetUp:function(){this.selectedIds={},this.$dragging=null,this.blocking=!1},_elementsSetUp:function(){this.invalidElements=[],this.workingElements=[],this.elementViews=[],this.workingElements=this.initialElements.slice(0),this._ensureElementIds(),this._validateElements(),this._mangleDuplicateNames(),this._sortElements()},_ensureElementIds:function(){return this.workingElements.forEach(function(e){e.hasOwnProperty("id")||(e.id=_.uniqueId())}),this.workingElements},_validateElements:function(){var e=this;return e.invalidElements=[],this.workingElements=this.workingElements.filter(function(t){var l=e._isElementInvalid(t);return l&&e.invalidElements.push({element:t,text:l}),!l}),this.workingElements},_isElementInvalid:function(e){return"dataset_collection"===e.history_content_type?(0,f.default)("is a collection, this is not allowed"):e.state===d.default.OK||_.contains(d.default.NOT_READY_STATES,e.state)?e.deleted||e.purged?(0,f.default)("has been deleted or purged"):null:(0,f.default)("has errored, is paused, or is not accessible")},_mangleDuplicateNames:function(){var e=1,t={};this.workingElements.forEach(function(l){for(var n=l.name;t.hasOwnProperty(n);)if(n=l.name+" ("+e+")",(e+=1)>=900)throw new Error("Safety hit in while loop - thats impressive");l.name=n,t[l.name]=!0})},_sortElements:function(e){},render:function(e,t){return this.workingElements.length<this.minElements?this._renderInvalid(e,t):(this.$el.empty().html(this.templates.main()),this._renderHeader(e),this._renderMiddle(e),this._renderFooter(e),this._addPluginComponents(),this.$(".collection-name").focus(),this.trigger("rendered",this),this)},_renderInvalid:function(e,t){return this.$el.empty().html(this.templates.invalidInitial({problems:this.invalidElements,elements:this.workingElements})),"function"==typeof this.oncancel&&this.$(".cancel-create.btn").show(),this.trigger("rendered",this),this},_renderHeader:function(e,t){var l=this.$(".header").empty().html(this.templates.header()).find(".help-content").prepend($(this.templates.helpContent()));return this.invalidElements.length&&this._invalidElementsAlert(),l},_renderMiddle:function(e,t){var l=this.$(".middle").empty().html(this.templates.middle());return this._renderList(e),l},_addPluginComponents:function(){this.$(".help-content i").hoverhighlight(".collection-creator",this.highlightClr)},_invalidElementsAlert:function(){this._showAlert(this.templates.invalidElements({problems:this.invalidElements}),"alert-warning")},_disableNameAndCreate:function(e){(e=!!_.isUndefined(e)||e)&&(this.$(".collection-name").prop("disabled",!0),this.$(".create-collection").toggleClass("disabled",!0))},$list:function(){return this.$(".collection-elements")},_renderClearSelected:function(){_.size(this.selectedIds)?this.$(".collection-elements-controls > .clear-selected").show():this.$(".collection-elements-controls > .clear-selected").hide()},_renderList:function(e,t){var l=this,n=jQuery("<div/>"),i=l.$list();_.each(this.elementViews,function(e){e.destroy(),l.removeElementView(e)}),l.workingElements.forEach(function(e){var t=l._createElementView(e);n.append(t.$el)}),l._renderClearSelected(),i.empty().append(n.children()),_.invoke(l.elementViews,"render"),i.height()>i.css("max-height")?i.css("border-width","1px 0px 1px 0px"):i.css("border-width","0px")},_createElementView:function(e){var t=new this.elementViewClass({element:e,selected:_.has(this.selectedIds,e.id)});return this.elementViews.push(t),this._listenToElementView(t),t},_listenToElementView:function(e){var t=this;t.listenTo(e,{select:function(e){var l=e.source.element;e.selected?t.selectedIds[l.id]=!0:delete t.selectedIds[l.id],t.trigger("elements:select",e)},discard:function(e){t.trigger("elements:discard",e)}})},addElementView:function(e){},removeElementView:function(e){delete this.selectedIds[e.element.id],this._renderClearSelected(),this.elementViews=_.without(this.elementViews,e),this.stopListening(e)},_renderNoElementsLeft:function(){this._disableNameAndCreate(!0),this.$(".collection-elements").append(this.templates.noElementsLeft())},_elementToJSON:function(e){return e},createList:function(e){if(!this.workingElements.length){var t=(0,f.default)("No valid elements for final list")+". ";return t+='<a class="cancel-create" href="javascript:void(0);">'+(0,f.default)("Cancel")+"</a> ",t+=(0,f.default)("or"),t+=' <a class="reset" href="javascript:void(0);">'+(0,f.default)("start over")+"</a>.",void this._showAlert(t)}var l=this,n=this.workingElements.map(function(e){return l._elementToJSON(e)});return l.blocking=!0,l.creationFn(n,e,l.hideOriginals).always(function(){l.blocking=!1}).fail(function(e,t,n){l.trigger("error",{xhr:e,status:t,message:(0,f.default)("An error occurred while creating this collection")})}).done(function(e,t,n){l.trigger("collection:created",e,t,n),l.metric("collection:created",e),"function"==typeof l.oncreate&&l.oncreate.call(this,e,t,n)})},_setUpBehaviors:function(){return this.on("error",this._errorHandler),this.once("rendered",function(){this.trigger("rendered:initial",this)}),this.on("elements:select",function(e){this._renderClearSelected()}),this.on("elements:discard",function(e){var t=e.source.element;this.removeElementView(e.source),this.workingElements=_.without(this.workingElements,t),this.workingElements.length||this._renderNoElementsLeft()}),this},_errorHandler:function(e){this.error(e);var t=this,l=e.message||(0,f.default)("An error occurred");if(e.xhr){var n=e.xhr,i=e.message;0===n.readyState&&0===n.status?l+=": "+(0,f.default)("Galaxy could not be reached and may be updating.")+(0,f.default)(" Try again in a few minutes."):n.responseJSON?l+=":<br /><pre>"+JSON.stringify(n.responseJSON)+"</pre>":l+=": "+i}t._showAlert(l,"alert-danger")},events:{"click .more-help":"_clickMoreHelp","click .less-help":"_clickLessHelp","click .main-help":"_toggleHelp","click .header .alert button":"_hideAlert","click .reset":"reset","click .clear-selected":"clearSelectedElements","click .collection-elements":"clearSelectedElements","dragover .collection-elements":"_dragoverElements","drop .collection-elements":"_dropElements","collection-element.dragstart .collection-elements":"_elementDragstart","collection-element.dragend   .collection-elements":"_elementDragend","change .collection-name":"_changeName","keydown .collection-name":"_nameCheckForEnter","change .hide-originals":"_changeHideOriginals","click .cancel-create":"_cancelCreate","click .create-collection":"_clickCreate"},reset:function(){this._instanceSetUp(),this._elementsSetUp(),this.render()},clearSelectedElements:function(e){this.$(".collection-elements .collection-element").removeClass("selected"),this.$(".collection-elements-controls > .clear-selected").hide()},_dragoverElements:function(e){e.preventDefault();var t=this.$list();this._checkForAutoscroll(t,e.originalEvent.clientY);var l=this._getNearestElement(e.originalEvent.clientY);this.$(".element-drop-placeholder").remove();var n=$('<div class="element-drop-placeholder"></div>');l.length?l.before(n):t.append(n)},_checkForAutoscroll:function(e,t){var l=e.offset(),n=e.scrollTop(),i=t-l.top,a=l.top+e.outerHeight()-t;i>=0&&i<this.autoscrollDist?e.scrollTop(n-2):a>=0&&a<this.autoscrollDist&&e.scrollTop(n+2)},_getNearestElement:function(e){for(var t=this.$(".collection-elements li.collection-element").toArray(),l=0;l<t.length;l++){var n=$(t[l]),i=n.offset().top,a=Math.floor(n.outerHeight()/2)+4;if(i+a>e&&i-a<e)return n}return $()},_dropElements:function(e){e.originalEvent&&(e=e.originalEvent),e.preventDefault(),e.dataTransfer.dropEffect="move";var t=this._getNearestElement(e.clientY);return t.length?this.$dragging.insertBefore(t):this.$dragging.insertAfter(this.$(".collection-elements .collection-element").last()),this._syncOrderToDom(),!1},_syncOrderToDom:function(){var e=this,t=[];this.$(".collection-elements .collection-element").each(function(){var l=$(this).attr("data-element-id"),n=_.findWhere(e.workingElements,{id:l});n?t.push(n):console.error("missing element: ",l)}),this.workingElements=t,this._renderList()},_elementDragstart:function(e,t){t.select(!0),this.$dragging=this.$(".collection-elements .collection-element.selected")},_elementDragend:function(e,t){$(".element-drop-placeholder").remove(),this.$dragging=null},templates:_.extend({},m.default.CollectionCreatorMixin._creatorTemplates,{header:_.template(['<div class="main-help well clear">','<a class="more-help" href="javascript:void(0);">',(0,f.default)("More help"),"</a>",'<div class="help-content">','<a class="less-help" href="javascript:void(0);">',(0,f.default)("Less"),"</a>","</div>","</div>",'<div class="alert alert-dismissable">','<button type="button" class="close" data-dismiss="alert" ','title="',(0,f.default)("Close and show more help"),'" aria-hidden="true">&times;</button>','<span class="alert-message"></span>',"</div>"].join("")),middle:_.template(['<div class="collection-elements-controls">','<a class="reset" href="javascript:void(0);" ','title="',(0,f.default)("Undo all reordering and discards"),'">',(0,f.default)("Start over"),"</a>",'<a class="clear-selected" href="javascript:void(0);" ','title="',(0,f.default)("De-select all selected datasets"),'">',(0,f.default)("Clear selected"),"</a>","</div>",'<div class="collection-elements scroll-container flex-row">',"</div>"].join("")),footer:_.template(['<div class="attributes clear">','<div class="clear">','<label class="setting-prompt pull-right">',(0,f.default)("Hide original elements"),"?",'<input class="hide-originals pull-right" type="checkbox" />',"</label>","</div>",'<div class="clear">','<input class="collection-name form-control pull-right" ','placeholder="',(0,f.default)("Enter a name for your new collection"),'" />','<div class="collection-name-prompt pull-right">',(0,f.default)("Name"),":</div>","</div>","</div>",'<div class="actions clear vertically-spaced">','<div class="other-options pull-left">','<button class="cancel-create btn" tabindex="-1">',(0,f.default)("Cancel"),"</button>",'<div class="create-other btn-group dropup">','<button class="btn btn-default dropdown-toggle" data-toggle="dropdown">',(0,f.default)("Create a different kind of collection"),' <span class="caret"></span>',"</button>",'<ul class="dropdown-menu" role="menu">','<li><a href="#">',(0,f.default)("Create a <i>single</i> pair"),"</a></li>",'<li><a href="#">',(0,f.default)("Create a list of <i>unpaired</i> datasets"),"</a></li>","</ul>","</div>","</div>",'<div class="main-options pull-right">','<button class="create-collection btn btn-primary">',(0,f.default)("Create list"),"</button>","</div>","</div>"].join("")),helpContent:_.template(["<p>",(0,f.default)(["Collections of datasets are permanent, ordered lists of datasets that can be passed to tools and ","workflows in order to have analyses done on each member of the entire group. This interface allows ","you to create a collection and re-order the final collection."].join("")),"</p>","<ul>","<li>",(0,f.default)(["Rename elements in the list by clicking on ",'<i data-target=".collection-element .name">the existing name</i>.'].join("")),"</li>","<li>",(0,f.default)(["Discard elements from the final created list by clicking on the ",'<i data-target=".collection-element .discard">"Discard"</i> button.'].join("")),"</li>","<li>",(0,f.default)(["Reorder the list by clicking and dragging elements. Select multiple elements by clicking on ",'<i data-target=".collection-element">them</i> and you can then move those selected by dragging the ',"entire group. Deselect them by clicking them again or by clicking the ",'the <i data-target=".clear-selected">"Clear selected"</i> link.'].join("")),"</li>","<li>",(0,f.default)(['Click the <i data-target=".reset">"Start over"</i> link to begin again as if you had just opened ',"the interface."].join("")),"</li>","<li>",(0,f.default)(['Click the <i data-target=".cancel-create">"Cancel"</i> button to exit the interface.'].join("")),"</li>","</ul><br />","<p>",(0,f.default)(['Once your collection is complete, enter a <i data-target=".collection-name">name</i> and ','click <i data-target=".create-collection">"Create list"</i>.'].join("")),"</p>"].join("")),invalidElements:_.template([(0,f.default)("The following selections could not be included due to problems:"),"<ul><% _.each( problems, function( problem ){ %>","<li><b><%- problem.element.name %></b>: <%- problem.text %></li>","<% }); %></ul>"].join("")),noElementsLeft:_.template(['<li class="no-elements-left-message">',(0,f.default)("No elements left! "),(0,f.default)("Would you like to "),'<a class="reset" href="javascript:void(0)">',(0,f.default)("start over"),"</a>?","</li>"].join("")),invalidInitial:_.template(['<div class="header flex-row no-flex">','<div class="alert alert-warning" style="display: block">','<span class="alert-message">',"<% if( _.size( problems ) ){ %>",(0,f.default)("The following selections could not be included due to problems"),":","<ul><% _.each( problems, function( problem ){ %>","<li><b><%- problem.element.name %></b>: <%- problem.text %></li>","<% }); %></ul>","<% } else if( _.size( elements ) < 1 ){ %>",(0,f.default)("No datasets were selected"),".","<% } %>","<br />",(0,f.default)("At least one element is needed for the collection"),". ",(0,f.default)("You may need to "),'<a class="cancel-create" href="javascript:void(0)">',(0,f.default)("cancel"),"</a> ",(0,f.default)("and reselect new elements"),".","</span>","</div>","</div>",'<div class="footer flex-row no-flex">','<div class="actions clear vertically-spaced">','<div class="other-options pull-left">','<button class="cancel-create btn" tabindex="-1">',(0,f.default)("Cancel"),"</button>","</div>","</div>","</div>"].join(""))}),toString:function(){return"ListCollectionCreator"}}),v=function(e,t,l){var n,i=jQuery.Deferred(),a=Galaxy.modal||new u.default.View;return t=_.defaults(t||{},{elements:e,oncancel:function(){a.hide(),i.reject("cancelled")},oncreate:function(e,t){a.hide(),i.resolve(t)}}),n=new l(t),a.show({title:t.title||(0,f.default)("Create a collection"),body:n.$el,width:"80%",height:"100%",closing_events:!0}),n.render(),window._collectionCreator=n,i},b=function(e,t){return t=t||{},t.title=(0,f.default)("Create a collection from a list of datasets"),v(e,t,p)};e.default={DatasetCollectionElementView:g,ListCollectionCreator:p,collectionCreatorModal:v,listCollectionCreatorModal:b,createListCollection:function(e,t){var l=e.toJSON();return b(l,{defaultHideSourceItems:t,creationFn:function(t,l,n){return t=t.map(function(e){return{id:e.id,name:e.name,src:"dataset"===e.history_content_type?"hda":"hdca"}}),e.createHDCA(t,"list",l,n)}})}}});
\ No newline at end of file
diff --git a/static/scripts/mvc/collection/list-of-pairs-collection-creator.js b/static/scripts/mvc/collection/list-of-pairs-collection-creator.js
index bc2f3992a17..be84ac26427 100644
--- a/static/scripts/mvc/collection/list-of-pairs-collection-creator.js
+++ b/static/scripts/mvc/collection/list-of-pairs-collection-creator.js
@@ -1 +1 @@
-define("mvc/collection/list-of-pairs-collection-creator",["exports","utils/levenshtein","utils/natural-sort","mvc/collection/base-creator","mvc/base-mvc","utils/localization","ui/hoverhighlight"],function(e,t,i,a,r,n){"use strict";function s(e){return e&&e.__esModule?e:{default:e}}function l(e){function t(){return i.length||(i=[new RegExp(this.filters[0]),new RegExp(this.filters[1])]),i}(e=e||{}).createPair=e.createPair||function(e){var t=(e=e||{}).listA.splice(e.indexA,1)[0],i=e.listB.splice(e.indexB,1)[0],a=e.listB.indexOf(t),r=e.listA.indexOf(i);return-1!==a&&e.listB.splice(a,1),-1!==r&&e.listA.splice(r,1),this._pair(t,i,{silent:!0})};var i=[];return e.preprocessMatch=e.preprocessMatch||function(e){var i=t.call(this);return _.extend(e,{matchTo:e.matchTo.name.replace(i[0],""),possible:e.possible.name.replace(i[1],"")})},function(t){this.debug("autopair _strategy ---------------------------");var i,a=(t=t||{}).listA,r=t.listB,n=0,s={score:0,index:null},l=[];for(this.debug("starting list lens:",a.length,r.length),this.debug("bestMatch (starting):",JSON.stringify(s,null,"  "));n<a.length;){var o=a[n];for(s.score=0,i=0;i<r.length;i++){var d=r[i];if(this.debug(n+":"+o.name),this.debug(i+":"+d.name),a[n]!==r[i]&&(s=e.match.call(this,e.preprocessMatch.call(this,{matchTo:o,possible:d,index:i,bestMatch:s})),this.debug("bestMatch:",JSON.stringify(s,null,"  ")),1===s.score)){this.debug("breaking early due to perfect match");break}}var c=e.scoreThreshold.call(this);if(this.debug("scoreThreshold:",c),this.debug("bestMatch.score:",s.score),s.score>=c?l.push(e.createPair.call(this,{listA:a,indexA:n,listB:r,indexB:s.index})):n+=1,!a.length||!r.length)return l}return this.debug("paired:",JSON.stringify(l,null,"  ")),this.debug("autopair _strategy ---------------------------"),l}}Object.defineProperty(e,"__esModule",{value:!0});var o=s(t),d=s(i),c=s(a),u=s(r),h=s(n),p=Backbone.View.extend(u.default.LoggableMixin).extend({_logNamespace:"collections",tagName:"li",className:"dataset paired",initialize:function(e){this.pair=e.pair||{}},template:_.template(['<span class="forward-dataset-name flex-column"><%- pair.forward.name %></span>','<span class="pair-name-column flex-column">','<span class="pair-name"><%- pair.name %></span>',"</span>",'<span class="reverse-dataset-name flex-column"><%- pair.reverse.name %></span>'].join("")),render:function(){this.dragStartHandler=_.bind(this._dragstart,this),this.dragEndHandler=_.bind(this._dragend,this);var e=this.$el.attr("draggable",!0).data("pair",this.pair).html(this.template({pair:this.pair})).addClass("flex-column-container").get(0);return e.addEventListener("dragstart",this.dragStartHandler,!1),e.addEventListener("dragend",this.dragEndHandler,!1),this},events:{dragover:"_sendToParent",drop:"_sendToParent"},_dragstart:function(e){e.currentTarget.style.opacity="0.4",e.originalEvent&&(e=e.originalEvent),e.dataTransfer.effectAllowed="move",e.dataTransfer.setData("text/plain",JSON.stringify(this.pair)),this.$el.parent().trigger("pair.dragstart",[this])},_dragend:function(e){e.currentTarget.style.opacity="1.0",this.$el.parent().trigger("pair.dragend",[this])},_sendToParent:function(e){this.$el.parent().trigger(e)},toString:function(){return"PairView("+this.pair.name+")"}}),f=Backbone.View.extend(u.default.LoggableMixin).extend(c.default.CollectionCreatorMixin).extend({_logNamespace:"collections",className:"list-of-pairs-collection-creator collection-creator flex-row-container",initialize:function(e){this.metric("PairedCollectionCreator.initialize",e),e=_.defaults(e,{datasets:[],filters:this.DEFAULT_FILTERS,automaticallyPair:!0,strategy:"lcs",matchPercentage:.9,twoPassAutopairing:!0}),this.initialList=e.datasets,this.historyId=e.historyId,this.filters=this.commonFilters[e.filters]||this.commonFilters[this.DEFAULT_FILTERS],_.isArray(e.filters)&&(this.filters=e.filters),this.automaticallyPair=e.automaticallyPair,this.strategy=this.strategies[e.strategy]||this.strategies[this.DEFAULT_STRATEGY],_.isFunction(e.strategy)&&(this.strategy=e.strategy),this.matchPercentage=e.matchPercentage,this.twoPassAutopairing=e.twoPassAutopairing,this.removeExtensions=!0,this.oncancel=e.oncancel,this.oncreate=e.oncreate,this.autoscrollDist=e.autoscrollDist||24,this.unpairedPanelHidden=!1,this.pairedPanelHidden=!1,this.$dragging=null,this.blocking=!1,this._setUpCommonSettings(e),this._setUpBehaviors(),this._dataSetUp()},commonFilters:{illumina:["_1","_2"],Rs:["_R1","_R2"]},DEFAULT_FILTERS:"illumina",strategies:{simple:"autopairSimple",lcs:"autopairLCS",levenshtein:"autopairLevenshtein"},DEFAULT_STRATEGY:"lcs",_dataSetUp:function(){this.paired=[],this.unpaired=[],this.selectedIds=[],this._sortInitialList(),this._ensureIds(),this.unpaired=this.initialList.slice(0),this.automaticallyPair&&(this.autoPair(),this.once("rendered:initial",function(){this.trigger("autopair")}))},_sortInitialList:function(){this._sortDatasetList(this.initialList)},_sortDatasetList:function(e){return e.sort(function(e,t){return(0,d.default)(e.name,t.name)}),e},_ensureIds:function(){return this.initialList.forEach(function(e){e.hasOwnProperty("id")||(e.id=_.uniqueId())}),this.initialList},_splitByFilters:function(){function e(e,t){return t.test(e.name)}var t=this.filters.map(function(e){return new RegExp(e)}),i=[[],[]];return this.unpaired.forEach(function(a){t.forEach(function(t,r){e(a,t)&&i[r].push(a)})}),i},_addToUnpaired:function(e){var t=this;this.unpaired.splice(function i(a,r){if(a===r)return a;var n=Math.floor((r-a)/2)+a,s=(0,d.default)(e.name,t.unpaired[n].name);if(s<0)return i(a,n);if(s>0)return i(n+1,r);for(;t.unpaired[n]&&t.unpaired[n].name===e.name;)n++;return n}(0,this.unpaired.length),0,e)},autoPair:function(e){var t=this._splitByFilters(),i=[];return this.twoPassAutopairing&&(i=this.autopairSimple({listA:t[0],listB:t[1]}),t=this._splitByFilters()),e=e||this.strategy,t=this._splitByFilters(),i=i.concat(this[e].call(this,{listA:t[0],listB:t[1]}))},autopairSimple:l({scoreThreshold:function(){return.6},match:function(e){return(e=e||{}).matchTo===e.possible?{index:e.index,score:1}:e.bestMatch}}),autopairLevenshtein:l({scoreThreshold:function(){return this.matchPercentage},match:function(e){e=e||{};var t=1-(0,o.default)(e.matchTo,e.possible)/Math.max(e.matchTo.length,e.possible.length);return t>e.bestMatch.score?{index:e.index,score:t}:e.bestMatch}}),autopairLCS:l({scoreThreshold:function(){return this.matchPercentage},match:function(e){e=e||{};var t=this._naiveStartingAndEndingLCS(e.matchTo,e.possible).length/Math.max(e.matchTo.length,e.possible.length);return t>e.bestMatch.score?{index:e.index,score:t}:e.bestMatch}}),_naiveStartingAndEndingLCS:function(e,t){for(var i="",a="",r=0,n=0;r<e.length&&r<t.length&&e[r]===t[r];)i+=e[r],r+=1;if(r===e.length)return e;if(r===t.length)return t;for(r=e.length-1,n=t.length-1;r>=0&&n>=0&&e[r]===t[n];)a=[e[r],a].join(""),r-=1,n-=1;return i+a},_pair:function(e,t,i){i=i||{},this.debug("_pair:",e,t);var a=this._createPair(e,t,i.name);return this.paired.push(a),this.unpaired=_.without(this.unpaired,e,t),i.silent||this.trigger("pair:new",a),a},_createPair:function(e,t,i){if(!e||!t||e===t)throw new Error("Bad pairing: "+[JSON.stringify(e),JSON.stringify(t)]);return i=i||this._guessNameForPair(e,t),{forward:e,name:i,reverse:t}},_guessNameForPair:function(e,t,i){i=void 0!==i?i:this.removeExtensions;var a=e.name,r=t.name,n=this._naiveStartingAndEndingLCS(a.replace(new RegExp(this.filters[0]),""),r.replace(new RegExp(this.filters[1]),""));if(i){var s=n.lastIndexOf(".");if(s>0){var l=n.slice(s,n.length);n=n.replace(l,""),a=a.replace(l,""),r=r.replace(l,"")}}return n||a+" & "+r},_unpair:function(e,t){if(t=t||{},!e)throw new Error("Bad pair: "+JSON.stringify(e));return this.paired=_.without(this.paired,e),this._addToUnpaired(e.forward),this._addToUnpaired(e.reverse),t.silent||this.trigger("pair:unpair",[e]),e},unpairAll:function(){for(var e=[];this.paired.length;)e.push(this._unpair(this.paired[0],{silent:!0}));this.trigger("pair:unpair",e)},_pairToJSON:function(e,t){return t=t||"hda",{collection_type:"paired",src:"new_collection",name:e.name,element_identifiers:[{name:"forward",id:e.forward.id,src:t},{name:"reverse",id:e.reverse.id,src:t}]}},createList:function(e){var t=this,i=Galaxy.root+"api/histories/"+this.historyId+"/contents/dataset_collections",a={type:"dataset_collection",collection_type:"list:paired",hide_source_items:t.hideOriginals||!1,name:_.escape(e||t.$(".collection-name").val()),element_identifiers:t.paired.map(function(e){return t._pairToJSON(e)})};return t.blocking=!0,jQuery.ajax(i,{type:"POST",contentType:"application/json",dataType:"json",data:JSON.stringify(a)}).always(function(){t.blocking=!1}).fail(function(e,i,a){t._ajaxErrHandler(e,i,a)}).done(function(e,i,a){t.trigger("collection:created",e,i,a),t.metric("collection:created",e),"function"==typeof t.oncreate&&t.oncreate.call(this,e,i,a)})},_ajaxErrHandler:function(e,t,i){this.error(e,t,i);var a=this,r=(0,h.default)("An error occurred while creating this collection");e&&(0===e.readyState&&0===e.status?r+=": "+(0,h.default)("Galaxy could not be reached and may be updating.")+(0,h.default)(" Try again in a few minutes."):e.responseJSON?r+="<br /><pre>"+JSON.stringify(e.responseJSON)+"</pre>":r+=": "+i),a._showAlert(r,"alert-danger")},render:function(e,t){return this.$el.empty().html(this.templates.main()),this._renderHeader(e),this._renderMiddle(e),this._renderFooter(e),this._addPluginComponents(),this.trigger("rendered",this),this},_renderHeader:function(e,t){var i=this.$(".header").empty().html(this.templates.header()).find(".help-content").prepend($(this.templates.helpContent()));return this._renderFilters(),i},_renderFilters:function(){return this.$(".forward-column .column-header input").val(this.filters[0]).add(this.$(".reverse-column .column-header input").val(this.filters[1]))},_renderMiddle:function(e,t){var i=this.$(".middle").empty().html(this.templates.middle());return this.unpairedPanelHidden?this.$(".unpaired-columns").hide():this.pairedPanelHidden&&this.$(".paired-columns").hide(),this._renderUnpaired(),this._renderPaired(),i},_renderUnpaired:function(e,t){var i,a,r=this,n=[],s=this._splitByFilters();this.$(".forward-column .title").text([s[0].length,(0,h.default)("unpaired forward")].join(" ")),this.$(".forward-column .unpaired-info").text(this._renderUnpairedDisplayStr(this.unpaired.length-s[0].length)),this.$(".reverse-column .title").text([s[1].length,(0,h.default)("unpaired reverse")].join(" ")),this.$(".reverse-column .unpaired-info").text(this._renderUnpairedDisplayStr(this.unpaired.length-s[1].length)),this.$(".unpaired-columns .column-datasets").empty(),this.$(".autopair-link").toggle(0!==this.unpaired.length),0!==this.unpaired.length?(a=s[1].map(function(e,t){return void 0!==s[0][t]&&s[0][t]!==e&&n.push(r._renderPairButton()),r._renderUnpairedDataset(e)}),(i=s[0].map(function(e){return r._renderUnpairedDataset(e)})).length||a.length?(this.$(".unpaired-columns .forward-column .column-datasets").append(i).add(this.$(".unpaired-columns .paired-column .column-datasets").append(n)).add(this.$(".unpaired-columns .reverse-column .column-datasets").append(a)),this._adjUnpairedOnScrollbar()):this._renderUnpairedNotShown()):this._renderUnpairedEmpty()},_renderUnpairedDisplayStr:function(e){return["(",e," ",(0,h.default)("filtered out"),")"].join("")},_renderUnpairedDataset:function(e){return $("<li/>").attr("id","dataset-"+e.id).addClass("dataset unpaired").attr("draggable",!0).addClass(e.selected?"selected":"").append($("<span/>").addClass("dataset-name").text(e.name)).data("dataset",e)},_renderPairButton:function(){return $("<li/>").addClass("dataset unpaired").append($("<span/>").addClass("dataset-name").text((0,h.default)("Pair these datasets")))},_renderUnpairedEmpty:function(){var e=$('<div class="empty-message"></div>').text("("+(0,h.default)("no remaining unpaired datasets")+")");return this.$(".unpaired-columns .paired-column .column-datasets").empty().prepend(e),e},_renderUnpairedNotShown:function(){var e=$('<div class="empty-message"></div>').text("("+(0,h.default)("no datasets were found matching the current filters")+")");return this.$(".unpaired-columns .paired-column .column-datasets").empty().prepend(e),e},_adjUnpairedOnScrollbar:function(){var e=this.$(".unpaired-columns").last(),t=this.$(".unpaired-columns .reverse-column .dataset").first();if(t.length){var i=e.offset().left+e.outerWidth(),a=t.offset().left+t.outerWidth(),r=Math.floor(i)-Math.floor(a);this.$(".unpaired-columns .forward-column").css("margin-left",r>0?r:0)}},_renderPaired:function(e,t){if(this.$(".paired-column-title .title").text([this.paired.length,(0,h.default)("paired")].join(" ")),this.$(".unpair-all-link").toggle(0!==this.paired.length),0!==this.paired.length){this.$(".remove-extensions-link").show(),this.$(".paired-columns .column-datasets").empty();var i=this;this.paired.forEach(function(e,t){var a=new p({pair:e});i.$(".paired-columns .column-datasets").append(a.render().$el).append(['<button class="unpair-btn">','<span class="fa fa-unlink" title="',(0,h.default)("Unpair"),'"></span>',"</button>"].join(""))})}else this._renderPairedEmpty()},_renderPairedEmpty:function(){var e=$('<div class="empty-message"></div>').text("("+(0,h.default)("no paired datasets yet")+")");return this.$(".paired-columns .column-datasets").empty().prepend(e),e},footerSettings:{".hide-originals":"hideOriginals",".remove-extensions":"removeExtensions"},_addPluginComponents:function(){this._chooseFiltersPopover(".choose-filters-link"),this.$(".help-content i").hoverhighlight(".collection-creator","rgba( 64, 255, 255, 1.0 )")},_chooseFiltersPopover:function(e){function t(e,t){return['<button class="filter-choice btn" ','data-forward="',e,'" data-reverse="',t,'">',(0,h.default)("Forward"),": ",e,", ",(0,h.default)("Reverse"),": ",t,"</button>"].join("")}var i=$(_.template(['<div class="choose-filters">','<div class="help">',(0,h.default)("Choose from the following filters to change which unpaired reads are shown in the display"),":</div>",_.values(this.commonFilters).map(function(e){return t(e[0],e[1])}).join(""),"</div>"].join(""))({}));return this.$(e).popover({container:".collection-creator",placement:"bottom",html:!0,content:i})},_validationWarning:function(e,t){"name"===e&&(e=this.$(".collection-name").add(this.$(".collection-name-prompt")),this.$(".collection-name").focus().select()),t?(e=e||this.$(".validation-warning")).removeClass("validation-warning"):e.addClass("validation-warning")},_setUpBehaviors:function(){return this.once("rendered",function(){this.trigger("rendered:initial",this)}),this.on("pair:new",function(){this._renderUnpaired(),this._renderPaired(),this.$(".paired-columns").scrollTop(8e6)}),this.on("pair:unpair",function(e){this._renderUnpaired(),this._renderPaired(),this.splitView()}),this.on("filter-change",function(){this.filters=[this.$(".forward-unpaired-filter input").val(),this.$(".reverse-unpaired-filter input").val()],this.metric("filter-change",this.filters),this._renderFilters(),this._renderUnpaired()}),this.on("autopair",function(){this._renderUnpaired(),this._renderPaired();var e,t=null;this.paired.length?(t="alert-success",e=this.paired.length+" "+(0,h.default)("pairs created"),this.unpaired.length||(e+=": "+(0,h.default)("all datasets have been successfully paired"),this.hideUnpaired(),this.$(".collection-name").focus())):e=(0,h.default)(["Could not automatically create any pairs from the given dataset names.","You may want to choose or enter different filters and try auto-pairing again.","Close this message using the X on the right to view more help."].join(" ")),this._showAlert(e,t)}),this},events:{"click .more-help":"_clickMoreHelp","click .less-help":"_clickLessHelp","click .main-help":"_toggleHelp","click .header .alert button":"_hideAlert","click .forward-column .column-title":"_clickShowOnlyUnpaired","click .reverse-column .column-title":"_clickShowOnlyUnpaired","click .unpair-all-link":"_clickUnpairAll","change .forward-unpaired-filter input":function(e){this.trigger("filter-change")},"focus .forward-unpaired-filter 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this.unpairedPanelHidden=this.pairedPanelHidden=!1,this._renderMiddle(e,t),this},_clickUnpairAll:function(e){this.metric("unpairAll"),this.unpairAll()},_clickAutopair:function(e){var t=this.autoPair();this.metric("autopair",t.length,this.unpaired.length),this.trigger("autopair")},_clickFilterChoice:function(e){var t=$(e.currentTarget);this.$(".forward-unpaired-filter input").val(t.data("forward")),this.$(".reverse-unpaired-filter input").val(t.data("reverse")),this._hideChooseFilters(),this.trigger("filter-change")},_hideChooseFilters:function(){this.$(".choose-filters-link").popover("hide"),this.$(".popover").css("display","none")},_clearFilters:function(e){this.$(".forward-unpaired-filter input").val(""),this.$(".reverse-unpaired-filter input").val(""),this.trigger("filter-change")},_clickUnpairedDataset:function(e){return e.stopPropagation(),this.toggleSelectUnpaired($(e.currentTarget))},toggleSelectUnpaired:function(e,t){t=t||{};var i=e.data("dataset"),a=void 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t=this,i=$(e.target).addClass("selected"),a=function(e){t.$(e.target).filter(".dataset").addClass("selected")};i.parent().on("mousemove",a),$(document).one("mouseup",function(e){i.parent().off("mousemove",a),t.pairAllSelected()})}},_clickPairRow:function(e){var t=$(e.currentTarget).index(),i=$(".unpaired-columns .forward-column .dataset").eq(t).data("dataset"),a=$(".unpaired-columns .reverse-column .dataset").eq(t).data("dataset");this._pair(i,a)},_startPartitionDrag:function(e){function t(e){var t=e.pageY-a;i.adjPartition(t)||$("body").trigger("mouseup"),i._adjUnpairedOnScrollbar(),a+=t}var i=this,a=e.pageY;$("body").css("cursor","ns-resize"),i.$(".flexible-partition-drag").css("color","black"),$("body").mousemove(t),$("body").one("mouseup",function(e){i.$(".flexible-partition-drag").css("color",""),$("body").css("cursor","").unbind("mousemove",t)})},adjPartition:function(e){var t=this.$(".unpaired-columns"),i=this.$(".paired-columns"),a=parseInt(t.css("height"),10),r=parseInt(i.css("height"),10);a=Math.max(10,a+e),r-=e;var n=e<0;if(n){if(this.unpairedPanelHidden)return!1;if(a<=10)return this.hideUnpaired(),!1}else this.unpairedPanelHidden&&(t.show(),this.unpairedPanelHidden=!1);if(n)this.pairedPanelHidden&&(i.show(),this.pairedPanelHidden=!1);else{if(this.pairedPanelHidden)return!1;if(r<=15)return this.hidePaired(),!1}return t.css({height:a+"px",flex:"0 0 auto"}),!0},selectPair:function(e){e.stopPropagation(),$(e.currentTarget).toggleClass("selected")},clearSelectedPaired:function(e){this.$(".paired-columns .dataset.selected").removeClass("selected")},_clickPairName:function(e){e.stopPropagation();var t=$(e.currentTarget),i=t.parent().parent().index(".dataset.paired"),a=this.paired[i],r=prompt("Enter a new name for the pair:",a.name);r&&(a.name=r,a.customizedName=!0,t.text(a.name))},_clickUnpair:function(e){var 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t=this._getNearestPairedDatasetLi(e.originalEvent.clientY);return t.length?this.$dragging.insertBefore(t):this.$dragging.insertAfter(this.$(".paired-columns .unpair-btn").last()),this._syncPairsToDom(),!1},_syncPairsToDom:function(){var e=[];this.$(".paired-columns .dataset.paired").each(function(){e.push($(this).data("pair"))}),this.paired=e,this._renderPaired()},_pairDragstart:function(e,t){t.$el.addClass("selected");var i=this.$(".paired-columns .dataset.selected");this.$dragging=i},_pairDragend:function(e,t){$(".element-drop-placeholder").remove(),this.$dragging=null},toggleExtensions:function(e){var t=this;t.removeExtensions=void 0!==e?e:!t.removeExtensions,_.each(t.paired,function(e){e.customizedName||(e.name=t._guessNameForPair(e.forward,e.reverse))}),t._renderPaired(),t._renderFooter()},_printList:function(e){var t=this;_.each(e,function(i){e===t.paired?t._printPair(i):t.debug(i)})},_printPair:function(e){this.debug(e.forward.name,e.reverse.name,": 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flex-row">','<div class="forward-column flex-column column">','<ol class="column-datasets"></ol>',"</div>",'<div class="paired-column flex-column no-flex column">','<ol class="column-datasets"></ol>',"</div>",'<div class="reverse-column flex-column column">','<ol class="column-datasets"></ol>',"</div>","</div>",'<div class="flexible-partition">','<div class="flexible-partition-drag" title="',(0,h.default)("Drag to change"),'"></div>','<div class="column-header">','<div class="column-title paired-column-title">','<span class="title"></span>',"</div>",'<a class="unpair-all-link" href="javascript:void(0);">',(0,h.default)("Unpair all"),"</a>","</div>","</div>",'<div class="paired-columns flex-column-container scroll-container flex-row">','<ol class="column-datasets"></ol>',"</div>"].join("")),footer:_.template(['<div class="attributes clear">','<div class="clear">','<label class="setting-prompt pull-right">',(0,h.default)("Hide original elements"),"?",'<input class="hide-originals pull-right" type="checkbox" />',"</label>",'<label class="setting-prompt pull-right">',(0,h.default)("Remove file extensions from pair names"),"?",'<input class="remove-extensions pull-right" type="checkbox" />',"</label>","</div>",'<div class="clear">','<input class="collection-name form-control pull-right" ','placeholder="',(0,h.default)("Enter a name for your new list"),'" />','<div class="collection-name-prompt pull-right">',(0,h.default)("Name"),":</div>","</div>","</div>",'<div class="actions clear vertically-spaced">','<div class="other-options pull-left">','<button class="cancel-create btn" tabindex="-1">',(0,h.default)("Cancel"),"</button>",'<div class="create-other btn-group dropup">','<button class="btn btn-default dropdown-toggle" data-toggle="dropdown">',(0,h.default)("Create a different kind of collection"),' <span class="caret"></span>',"</button>",'<ul class="dropdown-menu" role="menu">','<li><a href="#">',(0,h.default)("Create a <i>single</i> pair"),"</a></li>",'<li><a href="#">',(0,h.default)("Create a list of <i>unpaired</i> datasets"),"</a></li>","</ul>","</div>","</div>",'<div class="main-options pull-right">','<button class="create-collection btn btn-primary">',(0,h.default)("Create list"),"</button>","</div>","</div>"].join("")),helpContent:_.template(["<p>",(0,h.default)(["Collections of paired datasets are ordered lists of dataset pairs (often forward and reverse reads). ","These collections can be passed to tools and workflows in order to have analyses done on each member of ","the entire group. This interface allows you to create a collection, choose which datasets are paired, ","and re-order the final collection."].join("")),"</p>","<p>",(0,h.default)(['Unpaired datasets are shown in the <i data-target=".unpaired-columns">unpaired section</i> ',"(hover over the underlined words to highlight below). ",'Paired datasets are shown in the <i data-target=".paired-columns">paired section</i>.',"<ul>To pair datasets, you can:","<li>Click a dataset in the ",'<i data-target=".unpaired-columns .forward-column .column-datasets,','.unpaired-columns .forward-column">forward column</i> ',"to select it then click a dataset in the ",'<i data-target=".unpaired-columns .reverse-column .column-datasets,','.unpaired-columns .reverse-column">reverse column</i>.',"</li>",'<li>Click one of the "Pair these datasets" buttons in the ','<i data-target=".unpaired-columns .paired-column .column-datasets,','.unpaired-columns .paired-column">middle column</i> ',"to pair the datasets in a particular row.","</li>",'<li>Click <i data-target=".autopair-link">"Auto-pair"</i> ',"to have your datasets automatically paired based on name.","</li>","</ul>"].join("")),"</p>","<p>",(0,h.default)(["<ul>You can filter what is shown in the unpaired sections by:","<li>Entering partial dataset names in either the ",'<i data-target=".forward-unpaired-filter input">forward filter</i> or ','<i data-target=".reverse-unpaired-filter input">reverse filter</i>.',"</li>","<li>Choosing from a list of preset filters by clicking the ",'<i data-target=".choose-filters-link">"Choose filters" link</i>.',"</li>","<li>Entering regular expressions to match dataset names. See: ",'<a href="https://developer.mozilla.org/en-US/docs/Web/JavaScript/Guide/Regular_Expressions"',' target="_blank">MDN\'s JavaScript Regular Expression Tutorial</a>. ',"Note: forward slashes (\\) are not needed.","</li>","<li>Clearing the filters by clicking the ",'<i data-target=".clear-filters-link">"Clear filters" link</i>.',"</li>","</ul>"].join("")),"</p>","<p>",(0,h.default)(["To unpair individual dataset pairs, click the ",'<i data-target=".unpair-btn">unpair buttons ( <span class="fa fa-unlink"></span> )</i>. ','Click the <i data-target=".unpair-all-link">"Unpair all" link</i> to unpair all pairs.'].join("")),"</p>","<p>",(0,h.default)(['You can include or remove the file extensions (e.g. ".fastq") from your pair names by toggling the ','<i data-target=".remove-extensions-prompt">"Remove file extensions from pair names?"</i> control.'].join("")),"</p>","<p>",(0,h.default)(['Once your collection is complete, enter a <i data-target=".collection-name">name</i> and ','click <i data-target=".create-collection">"Create list"</i>. ',"(Note: you do not have to pair all unpaired datasets to finish.)"].join("")),"</p>"].join(""))})}),m=function(e,t){var i,a=jQuery.Deferred();if(t=_.defaults(t||{},{datasets:e,oncancel:function(){Galaxy.modal.hide(),a.reject("cancelled")},oncreate:function(e,t){Galaxy.modal.hide(),a.resolve(t)}}),!window.Galaxy||!Galaxy.modal)throw new Error("Galaxy or Galaxy.modal not found");return i=new f(t),Galaxy.modal.show({title:(0,h.default)("Create a collection of paired datasets"),body:i.$el,width:"80%",height:"800px",closing_events:!0}),i.render(),window.creator=i,a};e.default={PairedCollectionCreator:f,pairedCollectionCreatorModal:m,createListOfPairsCollection:function(e,t){var i=e.toJSON();return m(i,{historyId:e.historyId,defaultHideSourceItems:t})}}});
\ No newline at end of file
+define("mvc/collection/list-of-pairs-collection-creator",["exports","utils/levenshtein","utils/natural-sort","mvc/collection/base-creator","mvc/base-mvc","utils/localization","ui/hoverhighlight"],function(e,t,i,a,r,n){"use strict";function s(e){return e&&e.__esModule?e:{default:e}}function l(e){function t(){return i.length||(i=[new RegExp(this.filters[0]),new RegExp(this.filters[1])]),i}(e=e||{}).createPair=e.createPair||function(e){var t=(e=e||{}).listA.splice(e.indexA,1)[0],i=e.listB.splice(e.indexB,1)[0],a=e.listB.indexOf(t),r=e.listA.indexOf(i);return-1!==a&&e.listB.splice(a,1),-1!==r&&e.listA.splice(r,1),this._pair(t,i,{silent:!0})};var i=[];return e.preprocessMatch=e.preprocessMatch||function(e){var i=t.call(this);return _.extend(e,{matchTo:e.matchTo.name.replace(i[0],""),possible:e.possible.name.replace(i[1],"")})},function(t){this.debug("autopair _strategy ---------------------------");var i,a=(t=t||{}).listA,r=t.listB,n=0,s={score:0,index:null},l=[];for(this.debug("starting list lens:",a.length,r.length),this.debug("bestMatch (starting):",JSON.stringify(s,null,"  "));n<a.length;){var o=a[n];for(s.score=0,i=0;i<r.length;i++){var d=r[i];if(this.debug(n+":"+o.name),this.debug(i+":"+d.name),a[n]!==r[i]&&(s=e.match.call(this,e.preprocessMatch.call(this,{matchTo:o,possible:d,index:i,bestMatch:s})),this.debug("bestMatch:",JSON.stringify(s,null,"  ")),1===s.score)){this.debug("breaking early due to perfect match");break}}var c=e.scoreThreshold.call(this);if(this.debug("scoreThreshold:",c),this.debug("bestMatch.score:",s.score),s.score>=c?l.push(e.createPair.call(this,{listA:a,indexA:n,listB:r,indexB:s.index})):n+=1,!a.length||!r.length)return l}return this.debug("paired:",JSON.stringify(l,null,"  ")),this.debug("autopair _strategy ---------------------------"),l}}Object.defineProperty(e,"__esModule",{value:!0});var o=s(t),d=s(i),c=s(a),u=s(r),h=s(n),p=Backbone.View.extend(u.default.LoggableMixin).extend({_logNamespace:"collections",tagName:"li",className:"dataset paired",initialize:function(e){this.pair=e.pair||{}},template:_.template(['<span class="forward-dataset-name flex-column"><%- pair.forward.name %></span>','<span class="pair-name-column flex-column">','<span class="pair-name"><%- pair.name %></span>',"</span>",'<span class="reverse-dataset-name flex-column"><%- pair.reverse.name %></span>'].join("")),render:function(){this.dragStartHandler=_.bind(this._dragstart,this),this.dragEndHandler=_.bind(this._dragend,this);var e=this.$el.attr("draggable",!0).data("pair",this.pair).html(this.template({pair:this.pair})).addClass("flex-column-container").get(0);return e.addEventListener("dragstart",this.dragStartHandler,!1),e.addEventListener("dragend",this.dragEndHandler,!1),this},events:{dragover:"_sendToParent",drop:"_sendToParent"},_dragstart:function(e){e.currentTarget.style.opacity="0.4",e.originalEvent&&(e=e.originalEvent),e.dataTransfer.effectAllowed="move",e.dataTransfer.setData("text/plain",JSON.stringify(this.pair)),this.$el.parent().trigger("pair.dragstart",[this])},_dragend:function(e){e.currentTarget.style.opacity="1.0",this.$el.parent().trigger("pair.dragend",[this])},_sendToParent:function(e){this.$el.parent().trigger(e)},toString:function(){return"PairView("+this.pair.name+")"}}),f=Backbone.View.extend(u.default.LoggableMixin).extend(c.default.CollectionCreatorMixin).extend({_logNamespace:"collections",className:"list-of-pairs-collection-creator collection-creator flex-row-container",initialize:function(e){this.metric("PairedCollectionCreator.initialize",e),e=_.defaults(e,{datasets:[],filters:this.DEFAULT_FILTERS,automaticallyPair:!0,strategy:"lcs",matchPercentage:.9,twoPassAutopairing:!0}),this.initialList=e.datasets,this.historyId=e.historyId,this.filters=this.commonFilters[e.filters]||this.commonFilters[this.DEFAULT_FILTERS],_.isArray(e.filters)&&(this.filters=e.filters),this.automaticallyPair=e.automaticallyPair,this.strategy=this.strategies[e.strategy]||this.strategies[this.DEFAULT_STRATEGY],_.isFunction(e.strategy)&&(this.strategy=e.strategy),this.matchPercentage=e.matchPercentage,this.twoPassAutopairing=e.twoPassAutopairing,this.removeExtensions=!0,this.oncancel=e.oncancel,this.oncreate=e.oncreate,this.autoscrollDist=e.autoscrollDist||24,this.unpairedPanelHidden=!1,this.pairedPanelHidden=!1,this.$dragging=null,this.blocking=!1,this._setUpCommonSettings(e),this._setUpBehaviors(),this._dataSetUp()},commonFilters:{illumina:["_1","_2"],Rs:["_R1","_R2"]},DEFAULT_FILTERS:"illumina",strategies:{simple:"autopairSimple",lcs:"autopairLCS",levenshtein:"autopairLevenshtein"},DEFAULT_STRATEGY:"lcs",_dataSetUp:function(){this.paired=[],this.unpaired=[],this.selectedIds=[],this._sortInitialList(),this._ensureIds(),this.unpaired=this.initialList.slice(0),this.automaticallyPair&&(this.autoPair(),this.once("rendered:initial",function(){this.trigger("autopair")}))},_sortInitialList:function(){this._sortDatasetList(this.initialList)},_sortDatasetList:function(e){return e.sort(function(e,t){return(0,d.default)(e.name,t.name)}),e},_ensureIds:function(){return this.initialList.forEach(function(e){e.hasOwnProperty("id")||(e.id=_.uniqueId())}),this.initialList},_splitByFilters:function(){function e(e,t){return t.test(e.name)}var t=this.filters.map(function(e){return new RegExp(e)}),i=[[],[]];return this.unpaired.forEach(function(a){t.forEach(function(t,r){e(a,t)&&i[r].push(a)})}),i},_addToUnpaired:function(e){var t=this;this.unpaired.splice(function i(a,r){if(a===r)return a;var n=Math.floor((r-a)/2)+a,s=(0,d.default)(e.name,t.unpaired[n].name);if(s<0)return i(a,n);if(s>0)return i(n+1,r);for(;t.unpaired[n]&&t.unpaired[n].name===e.name;)n++;return n}(0,this.unpaired.length),0,e)},autoPair:function(e){var t=this._splitByFilters(),i=[];return this.twoPassAutopairing&&(i=this.autopairSimple({listA:t[0],listB:t[1]}),t=this._splitByFilters()),e=e||this.strategy,t=this._splitByFilters(),i=i.concat(this[e].call(this,{listA:t[0],listB:t[1]}))},autopairSimple:l({scoreThreshold:function(){return.6},match:function(e){return(e=e||{}).matchTo===e.possible?{index:e.index,score:1}:e.bestMatch}}),autopairLevenshtein:l({scoreThreshold:function(){return this.matchPercentage},match:function(e){e=e||{};var t=1-(0,o.default)(e.matchTo,e.possible)/Math.max(e.matchTo.length,e.possible.length);return t>e.bestMatch.score?{index:e.index,score:t}:e.bestMatch}}),autopairLCS:l({scoreThreshold:function(){return this.matchPercentage},match:function(e){e=e||{};var t=this._naiveStartingAndEndingLCS(e.matchTo,e.possible).length/Math.max(e.matchTo.length,e.possible.length);return t>e.bestMatch.score?{index:e.index,score:t}:e.bestMatch}}),_naiveStartingAndEndingLCS:function(e,t){for(var i="",a="",r=0,n=0;r<e.length&&r<t.length&&e[r]===t[r];)i+=e[r],r+=1;if(r===e.length)return e;if(r===t.length)return t;for(r=e.length-1,n=t.length-1;r>=0&&n>=0&&e[r]===t[n];)a=[e[r],a].join(""),r-=1,n-=1;return i+a},_pair:function(e,t,i){i=i||{},this.debug("_pair:",e,t);var a=this._createPair(e,t,i.name);return this.paired.push(a),this.unpaired=_.without(this.unpaired,e,t),i.silent||this.trigger("pair:new",a),a},_createPair:function(e,t,i){if(!e||!t||e===t)throw new Error("Bad pairing: "+[JSON.stringify(e),JSON.stringify(t)]);return i=i||this._guessNameForPair(e,t),{forward:e,name:i,reverse:t}},_guessNameForPair:function(e,t,i){i=void 0!==i?i:this.removeExtensions;var a=e.name,r=t.name,n=this._naiveStartingAndEndingLCS(a.replace(new RegExp(this.filters[0]),""),r.replace(new RegExp(this.filters[1]),""));if(i){var s=n.lastIndexOf(".");if(s>0){var l=n.slice(s,n.length);n=n.replace(l,""),a=a.replace(l,""),r=r.replace(l,"")}}return n||a+" & "+r},_unpair:function(e,t){if(t=t||{},!e)throw new Error("Bad pair: "+JSON.stringify(e));return this.paired=_.without(this.paired,e),this._addToUnpaired(e.forward),this._addToUnpaired(e.reverse),t.silent||this.trigger("pair:unpair",[e]),e},unpairAll:function(){for(var e=[];this.paired.length;)e.push(this._unpair(this.paired[0],{silent:!0}));this.trigger("pair:unpair",e)},_pairToJSON:function(e,t){return t=t||"hda",{collection_type:"paired",src:"new_collection",name:e.name,element_identifiers:[{name:"forward",id:e.forward.id,src:t},{name:"reverse",id:e.reverse.id,src:t}]}},createList:function(e){var t=this,i=Galaxy.root+"api/histories/"+this.historyId+"/contents/dataset_collections",a={type:"dataset_collection",collection_type:"list:paired",hide_source_items:t.hideOriginals||!1,name:_.escape(e||t.$(".collection-name").val()),element_identifiers:t.paired.map(function(e){return t._pairToJSON(e)})};return t.blocking=!0,jQuery.ajax(i,{type:"POST",contentType:"application/json",dataType:"json",data:JSON.stringify(a)}).always(function(){t.blocking=!1}).fail(function(e,i,a){t._ajaxErrHandler(e,i,a)}).done(function(e,i,a){t.trigger("collection:created",e,i,a),t.metric("collection:created",e),"function"==typeof t.oncreate&&t.oncreate.call(this,e,i,a)})},_ajaxErrHandler:function(e,t,i){this.error(e,t,i);var a=this,r=(0,h.default)("An error occurred while creating this collection");e&&(0===e.readyState&&0===e.status?r+=": "+(0,h.default)("Galaxy could not be reached and may be updating.")+(0,h.default)(" Try again in a few minutes."):e.responseJSON?r+="<br /><pre>"+JSON.stringify(e.responseJSON)+"</pre>":r+=": "+i),a._showAlert(r,"alert-danger")},render:function(e,t){return this.$el.empty().html(this.templates.main()),this._renderHeader(e),this._renderMiddle(e),this._renderFooter(e),this._addPluginComponents(),this.trigger("rendered",this),this},_renderHeader:function(e,t){var i=this.$(".header").empty().html(this.templates.header()).find(".help-content").prepend($(this.templates.helpContent()));return this._renderFilters(),i},_renderFilters:function(){return this.$(".forward-column .column-header input").val(this.filters[0]).add(this.$(".reverse-column .column-header input").val(this.filters[1]))},_renderMiddle:function(e,t){var i=this.$(".middle").empty().html(this.templates.middle());return this.unpairedPanelHidden?this.$(".unpaired-columns").hide():this.pairedPanelHidden&&this.$(".paired-columns").hide(),this._renderUnpaired(),this._renderPaired(),i},_renderUnpaired:function(e,t){var i,a,r=this,n=[],s=this._splitByFilters();this.$(".forward-column .title").text([s[0].length,(0,h.default)("unpaired forward")].join(" ")),this.$(".forward-column .unpaired-info").text(this._renderUnpairedDisplayStr(this.unpaired.length-s[0].length)),this.$(".reverse-column .title").text([s[1].length,(0,h.default)("unpaired reverse")].join(" ")),this.$(".reverse-column .unpaired-info").text(this._renderUnpairedDisplayStr(this.unpaired.length-s[1].length)),this.$(".unpaired-columns .column-datasets").empty(),this.$(".autopair-link").toggle(0!==this.unpaired.length),0!==this.unpaired.length?(a=s[1].map(function(e,t){return void 0!==s[0][t]&&s[0][t]!==e&&n.push(r._renderPairButton()),r._renderUnpairedDataset(e)}),(i=s[0].map(function(e){return r._renderUnpairedDataset(e)})).length||a.length?(this.$(".unpaired-columns .forward-column .column-datasets").append(i).add(this.$(".unpaired-columns .paired-column .column-datasets").append(n)).add(this.$(".unpaired-columns .reverse-column .column-datasets").append(a)),this._adjUnpairedOnScrollbar()):this._renderUnpairedNotShown()):this._renderUnpairedEmpty()},_renderUnpairedDisplayStr:function(e){return["(",e," ",(0,h.default)("filtered out"),")"].join("")},_renderUnpairedDataset:function(e){return $("<li/>").attr("id","dataset-"+e.id).addClass("dataset unpaired").attr("draggable",!0).addClass(e.selected?"selected":"").append($("<span/>").addClass("dataset-name").text(e.name)).data("dataset",e)},_renderPairButton:function(){return $("<li/>").addClass("dataset unpaired").append($("<span/>").addClass("dataset-name").text((0,h.default)("Pair these datasets")))},_renderUnpairedEmpty:function(){var e=$('<div class="empty-message"></div>').text("("+(0,h.default)("no remaining unpaired datasets")+")");return this.$(".unpaired-columns .paired-column .column-datasets").empty().prepend(e),e},_renderUnpairedNotShown:function(){var e=$('<div class="empty-message"></div>').text("("+(0,h.default)("no datasets were found matching the current filters")+")");return this.$(".unpaired-columns .paired-column .column-datasets").empty().prepend(e),e},_adjUnpairedOnScrollbar:function(){var e=this.$(".unpaired-columns").last(),t=this.$(".unpaired-columns .reverse-column .dataset").first();if(t.length){var i=e.offset().left+e.outerWidth(),a=t.offset().left+t.outerWidth(),r=Math.floor(i)-Math.floor(a);this.$(".unpaired-columns .forward-column").css("margin-left",r>0?r:0)}},_renderPaired:function(e,t){if(this.$(".paired-column-title .title").text([this.paired.length,(0,h.default)("paired")].join(" ")),this.$(".unpair-all-link").toggle(0!==this.paired.length),0!==this.paired.length){this.$(".remove-extensions-link").show(),this.$(".paired-columns .column-datasets").empty();var i=this;this.paired.forEach(function(e,t){var a=new p({pair:e});i.$(".paired-columns .column-datasets").append(a.render().$el).append(['<button class="unpair-btn">','<span class="fa fa-unlink" title="',(0,h.default)("Unpair"),'"></span>',"</button>"].join(""))})}else this._renderPairedEmpty()},_renderPairedEmpty:function(){var e=$('<div class="empty-message"></div>').text("("+(0,h.default)("no paired datasets yet")+")");return this.$(".paired-columns .column-datasets").empty().prepend(e),e},footerSettings:{".hide-originals":"hideOriginals",".remove-extensions":"removeExtensions"},_addPluginComponents:function(){this._chooseFiltersPopover(".choose-filters-link"),this.$(".help-content i").hoverhighlight(".collection-creator","rgba( 64, 255, 255, 1.0 )")},_chooseFiltersPopover:function(e){function t(e,t){return['<button class="filter-choice btn" ','data-forward="',e,'" data-reverse="',t,'">',(0,h.default)("Forward"),": ",e,", ",(0,h.default)("Reverse"),": ",t,"</button>"].join("")}var i=$(_.template(['<div class="choose-filters">','<div class="help">',(0,h.default)("Choose from the following filters to change which unpaired reads are shown in the display"),":</div>",_.values(this.commonFilters).map(function(e){return t(e[0],e[1])}).join(""),"</div>"].join(""))({}));return this.$(e).popover({container:".collection-creator",placement:"bottom",html:!0,content:i})},_validationWarning:function(e,t){"name"===e&&(e=this.$(".collection-name").add(this.$(".collection-name-prompt")),this.$(".collection-name").focus().select()),t?(e=e||this.$(".validation-warning")).removeClass("validation-warning"):e.addClass("validation-warning")},_setUpBehaviors:function(){return this.once("rendered",function(){this.trigger("rendered:initial",this)}),this.on("pair:new",function(){this._renderUnpaired(),this._renderPaired(),this.$(".paired-columns").scrollTop(8e6)}),this.on("pair:unpair",function(e){this._renderUnpaired(),this._renderPaired(),this.splitView()}),this.on("filter-change",function(){this.filters=[this.$(".forward-unpaired-filter input").val(),this.$(".reverse-unpaired-filter input").val()],this.metric("filter-change",this.filters),this._renderFilters(),this._renderUnpaired()}),this.on("autopair",function(){this._renderUnpaired(),this._renderPaired();var e,t=null;this.paired.length?(t="alert-success",e=this.paired.length+" "+(0,h.default)("pairs created"),this.unpaired.length||(e+=": "+(0,h.default)("all datasets have been successfully paired"),this.hideUnpaired(),this.$(".collection-name").focus())):e=(0,h.default)(["Could not automatically create any pairs from the given dataset names.","You may want to choose or enter different filters and try auto-pairing again.","Close this message using the X on the right to view more help."].join(" ")),this._showAlert(e,t)}),this},events:{"click .more-help":"_clickMoreHelp","click .less-help":"_clickLessHelp","click .main-help":"_toggleHelp","click .header .alert button":"_hideAlert","click .forward-column .column-title":"_clickShowOnlyUnpaired","click .reverse-column .column-title":"_clickShowOnlyUnpaired","click .unpair-all-link":"_clickUnpairAll","change .forward-unpaired-filter input":function(e){this.trigger("filter-change")},"focus .forward-unpaired-filter input":function(e){$(e.currentTarget).select()},"click .autopair-link":"_clickAutopair","click .choose-filters .filter-choice":"_clickFilterChoice","click .clear-filters-link":"_clearFilters","change .reverse-unpaired-filter input":function(e){this.trigger("filter-change")},"focus .reverse-unpaired-filter input":function(e){$(e.currentTarget).select()},"click .forward-column .dataset.unpaired":"_clickUnpairedDataset","click .reverse-column .dataset.unpaired":"_clickUnpairedDataset","click .paired-column .dataset.unpaired":"_clickPairRow","click .unpaired-columns":"clearSelectedUnpaired","mousedown .unpaired-columns .dataset":"_mousedownUnpaired","click .paired-column-title":"_clickShowOnlyPaired","mousedown .flexible-partition-drag":"_startPartitionDrag","click .paired-columns .dataset.paired":"selectPair","click .paired-columns":"clearSelectedPaired","click .paired-columns .pair-name":"_clickPairName","click .unpair-btn":"_clickUnpair","dragover .paired-columns .column-datasets":"_dragoverPairedColumns","drop .paired-columns .column-datasets":"_dropPairedColumns","pair.dragstart .paired-columns .column-datasets":"_pairDragstart","pair.dragend   .paired-columns .column-datasets":"_pairDragend","change .remove-extensions":function(e){this.toggleExtensions()},"change .collection-name":"_changeName","keydown .collection-name":"_nameCheckForEnter","change .hide-originals":"_changeHideOriginals","click .cancel-create":"_cancelCreate","click .create-collection":"_clickCreate"},_clickShowOnlyUnpaired:function(e){this.$(".paired-columns").is(":visible")?this.hidePaired():this.splitView()},_clickShowOnlyPaired:function(e){this.$(".unpaired-columns").is(":visible")?this.hideUnpaired():this.splitView()},hideUnpaired:function(e,t){this.unpairedPanelHidden=!0,this.pairedPanelHidden=!1,this._renderMiddle(e,t)},hidePaired:function(e,t){this.unpairedPanelHidden=!1,this.pairedPanelHidden=!0,this._renderMiddle(e,t)},splitView:function(e,t){return this.unpairedPanelHidden=this.pairedPanelHidden=!1,this._renderMiddle(e,t),this},_clickUnpairAll:function(e){this.metric("unpairAll"),this.unpairAll()},_clickAutopair:function(e){var t=this.autoPair();this.metric("autopair",t.length,this.unpaired.length),this.trigger("autopair")},_clickFilterChoice:function(e){var t=$(e.currentTarget);this.$(".forward-unpaired-filter input").val(t.data("forward")),this.$(".reverse-unpaired-filter input").val(t.data("reverse")),this._hideChooseFilters(),this.trigger("filter-change")},_hideChooseFilters:function(){this.$(".choose-filters-link").popover("hide"),this.$(".popover").css("display","none")},_clearFilters:function(e){this.$(".forward-unpaired-filter input").val(""),this.$(".reverse-unpaired-filter input").val(""),this.trigger("filter-change")},_clickUnpairedDataset:function(e){return e.stopPropagation(),this.toggleSelectUnpaired($(e.currentTarget))},toggleSelectUnpaired:function(e,t){t=t||{};var i=e.data("dataset"),a=void 0!==t.force?t.force:!e.hasClass("selected");return e.length&&void 0!==i?(a?(e.addClass("selected"),t.waitToPair||this.pairAllSelected()):e.removeClass("selected"),e):e},pairAllSelected:function(e){e=e||{};var t=this,i=[],a=[],r=[];return t.$(".unpaired-columns .forward-column .dataset.selected").each(function(){i.push($(this).data("dataset"))}),t.$(".unpaired-columns .reverse-column .dataset.selected").each(function(){a.push($(this).data("dataset"))}),i.length=a.length=Math.min(i.length,a.length),i.forEach(function(e,i){try{r.push(t._pair(e,a[i],{silent:!0}))}catch(e){t.error(e)}}),r.length&&!e.silent&&this.trigger("pair:new",r),r},clearSelectedUnpaired:function(){this.$(".unpaired-columns .dataset.selected").removeClass("selected")},_mousedownUnpaired:function(e){if(e.shiftKey){var t=this,i=$(e.target).addClass("selected"),a=function(e){t.$(e.target).filter(".dataset").addClass("selected")};i.parent().on("mousemove",a),$(document).one("mouseup",function(e){i.parent().off("mousemove",a),t.pairAllSelected()})}},_clickPairRow:function(e){var t=$(e.currentTarget).index(),i=$(".unpaired-columns .forward-column .dataset").eq(t).data("dataset"),a=$(".unpaired-columns .reverse-column .dataset").eq(t).data("dataset");this._pair(i,a)},_startPartitionDrag:function(e){function t(e){var t=e.pageY-a;i.adjPartition(t)||$("body").trigger("mouseup"),i._adjUnpairedOnScrollbar(),a+=t}var i=this,a=e.pageY;$("body").css("cursor","ns-resize"),i.$(".flexible-partition-drag").css("color","black"),$("body").mousemove(t),$("body").one("mouseup",function(e){i.$(".flexible-partition-drag").css("color",""),$("body").css("cursor","").unbind("mousemove",t)})},adjPartition:function(e){var t=this.$(".unpaired-columns"),i=this.$(".paired-columns"),a=parseInt(t.css("height"),10),r=parseInt(i.css("height"),10);a=Math.max(10,a+e),r-=e;var n=e<0;if(n){if(this.unpairedPanelHidden)return!1;if(a<=10)return this.hideUnpaired(),!1}else this.unpairedPanelHidden&&(t.show(),this.unpairedPanelHidden=!1);if(n)this.pairedPanelHidden&&(i.show(),this.pairedPanelHidden=!1);else{if(this.pairedPanelHidden)return!1;if(r<=15)return this.hidePaired(),!1}return t.css({height:a+"px",flex:"0 0 auto"}),!0},selectPair:function(e){e.stopPropagation(),$(e.currentTarget).toggleClass("selected")},clearSelectedPaired:function(e){this.$(".paired-columns .dataset.selected").removeClass("selected")},_clickPairName:function(e){e.stopPropagation();var t=$(e.currentTarget),i=t.parent().parent().index(".dataset.paired"),a=this.paired[i],r=prompt("Enter a new name for the pair:",a.name);r&&(a.name=r,a.customizedName=!0,t.text(a.name))},_clickUnpair:function(e){var t=Math.floor($(e.currentTarget).index(".unpair-btn"));this._unpair(this.paired[t])},_dragoverPairedColumns:function(e){e.preventDefault();var t=this.$(".paired-columns .column-datasets");this._checkForAutoscroll(t,e.originalEvent.clientY);var i=this._getNearestPairedDatasetLi(e.originalEvent.clientY);$(".element-drop-placeholder").remove();var a=$('<div class="element-drop-placeholder"></div>');i.length?i.before(a):t.append(a)},_checkForAutoscroll:function(e,t){var i=e.offset(),a=e.scrollTop(),r=t-i.top,n=i.top+e.outerHeight()-t;r>=0&&r<this.autoscrollDist?e.scrollTop(a-2):n>=0&&n<this.autoscrollDist&&e.scrollTop(a+2)},_getNearestPairedDatasetLi:function(e){for(var t=this.$(".paired-columns .column-datasets li").toArray(),i=0;i<t.length;i++){var a=$(t[i]),r=a.offset().top,n=Math.floor(a.outerHeight()/2)+4;if(r+n>e&&r-n<e)return a}return $()},_dropPairedColumns:function(e){e.preventDefault(),e.dataTransfer.dropEffect="move";var t=this._getNearestPairedDatasetLi(e.originalEvent.clientY);return t.length?this.$dragging.insertBefore(t):this.$dragging.insertAfter(this.$(".paired-columns .unpair-btn").last()),this._syncPairsToDom(),!1},_syncPairsToDom:function(){var e=[];this.$(".paired-columns .dataset.paired").each(function(){e.push($(this).data("pair"))}),this.paired=e,this._renderPaired()},_pairDragstart:function(e,t){t.$el.addClass("selected");var i=this.$(".paired-columns .dataset.selected");this.$dragging=i},_pairDragend:function(e,t){$(".element-drop-placeholder").remove(),this.$dragging=null},toggleExtensions:function(e){var t=this;t.removeExtensions=void 0!==e?e:!t.removeExtensions,_.each(t.paired,function(e){e.customizedName||(e.name=t._guessNameForPair(e.forward,e.reverse))}),t._renderPaired(),t._renderFooter()},_printList:function(e){var t=this;_.each(e,function(i){e===t.paired?t._printPair(i):t.debug(i)})},_printPair:function(e){this.debug(e.forward.name,e.reverse.name,": ->",e.name)},toString:function(){return"PairedCollectionCreator"},templates:_.extend({},c.default.CollectionCreatorMixin._creatorTemplates,{header:_.template(['<div class="main-help well clear">','<a class="more-help" href="javascript:void(0);">',(0,h.default)("More help"),"</a>",'<div class="help-content">','<a class="less-help" href="javascript:void(0);">',(0,h.default)("Less"),"</a>","</div>","</div>",'<div class="alert alert-dismissable">','<button type="button" class="close" data-dismiss="alert" aria-hidden="true">&times;</button>','<span class="alert-message"></span>',"</div>",'<div class="column-headers vertically-spaced flex-column-container">','<div class="forward-column flex-column column">','<div class="column-header">','<div class="column-title">','<span class="title">',(0,h.default)("Unpaired forward"),"</span>",'<span class="title-info unpaired-info"></span>',"</div>",'<div class="unpaired-filter forward-unpaired-filter pull-left">','<input class="search-query" placeholder="',(0,h.default)("Filter this list"),'" />',"</div>","</div>","</div>",'<div class="paired-column flex-column no-flex column">','<div class="column-header">','<a class="choose-filters-link" href="javascript:void(0)">',(0,h.default)("Choose filters"),"</a>",'<a class="clear-filters-link" href="javascript:void(0);">',(0,h.default)("Clear filters"),"</a><br />",'<a class="autopair-link" href="javascript:void(0);">',(0,h.default)("Auto-pair"),"</a>","</div>","</div>",'<div class="reverse-column flex-column column">','<div class="column-header">','<div class="column-title">','<span class="title">',(0,h.default)("Unpaired reverse"),"</span>",'<span class="title-info unpaired-info"></span>',"</div>",'<div class="unpaired-filter reverse-unpaired-filter pull-left">','<input class="search-query" placeholder="',(0,h.default)("Filter this list"),'" />',"</div>","</div>","</div>","</div>"].join("")),middle:_.template(['<div class="unpaired-columns flex-column-container scroll-container flex-row">','<div class="forward-column flex-column column">','<ol class="column-datasets"></ol>',"</div>",'<div class="paired-column flex-column no-flex column">','<ol class="column-datasets"></ol>',"</div>",'<div class="reverse-column flex-column column">','<ol class="column-datasets"></ol>',"</div>","</div>",'<div class="flexible-partition">','<div class="flexible-partition-drag" title="',(0,h.default)("Drag to change"),'"></div>','<div class="column-header">','<div class="column-title paired-column-title">','<span class="title"></span>',"</div>",'<a class="unpair-all-link" href="javascript:void(0);">',(0,h.default)("Unpair all"),"</a>","</div>","</div>",'<div class="paired-columns flex-column-container scroll-container flex-row">','<ol class="column-datasets"></ol>',"</div>"].join("")),footer:_.template(['<div class="attributes clear">','<div class="clear">','<label class="setting-prompt pull-right">',(0,h.default)("Hide original elements"),"?",'<input class="hide-originals pull-right" type="checkbox" />',"</label>",'<label class="setting-prompt pull-right">',(0,h.default)("Remove file extensions from pair names"),"?",'<input class="remove-extensions pull-right" type="checkbox" />',"</label>","</div>",'<div class="clear">','<input class="collection-name form-control pull-right" ','placeholder="',(0,h.default)("Enter a name for your new list"),'" />','<div class="collection-name-prompt pull-right">',(0,h.default)("Name"),":</div>","</div>","</div>",'<div class="actions clear vertically-spaced">','<div class="other-options pull-left">','<button class="cancel-create btn" tabindex="-1">',(0,h.default)("Cancel"),"</button>",'<div class="create-other btn-group dropup">','<button class="btn btn-default dropdown-toggle" data-toggle="dropdown">',(0,h.default)("Create a different kind of collection"),' <span class="caret"></span>',"</button>",'<ul class="dropdown-menu" role="menu">','<li><a href="#">',(0,h.default)("Create a <i>single</i> pair"),"</a></li>",'<li><a href="#">',(0,h.default)("Create a list of <i>unpaired</i> datasets"),"</a></li>","</ul>","</div>","</div>",'<div class="main-options pull-right">','<button class="create-collection btn btn-primary">',(0,h.default)("Create list"),"</button>","</div>","</div>"].join("")),helpContent:_.template(["<p>",(0,h.default)(["Collections of paired datasets are ordered lists of dataset pairs (often forward and reverse reads). ","These collections can be passed to tools and workflows in order to have analyses done on each member of ","the entire group. This interface allows you to create a collection, choose which datasets are paired, ","and re-order the final collection."].join("")),"</p>","<p>",(0,h.default)(['Unpaired datasets are shown in the <i data-target=".unpaired-columns">unpaired section</i> ',"(hover over the underlined words to highlight below). ",'Paired datasets are shown in the <i data-target=".paired-columns">paired section</i>.',"<ul>To pair datasets, you can:","<li>Click a dataset in the ",'<i data-target=".unpaired-columns .forward-column .column-datasets,','.unpaired-columns .forward-column">forward column</i> ',"to select it then click a dataset in the ",'<i data-target=".unpaired-columns .reverse-column .column-datasets,','.unpaired-columns .reverse-column">reverse column</i>.',"</li>",'<li>Click one of the "Pair these datasets" buttons in the ','<i data-target=".unpaired-columns .paired-column .column-datasets,','.unpaired-columns .paired-column">middle column</i> ',"to pair the datasets in a particular row.","</li>",'<li>Click <i data-target=".autopair-link">"Auto-pair"</i> ',"to have your datasets automatically paired based on name.","</li>","</ul>"].join("")),"</p>","<p>",(0,h.default)(["<ul>You can filter what is shown in the unpaired sections by:","<li>Entering partial dataset names in either the ",'<i data-target=".forward-unpaired-filter input">forward filter</i> or ','<i data-target=".reverse-unpaired-filter input">reverse filter</i>.',"</li>","<li>Choosing from a list of preset filters by clicking the ",'<i data-target=".choose-filters-link">"Choose filters" link</i>.',"</li>","<li>Entering regular expressions to match dataset names. See: ",'<a href="https://developer.mozilla.org/en-US/docs/Web/JavaScript/Guide/Regular_Expressions"',' target="_blank">MDN\'s JavaScript Regular Expression Tutorial</a>. ',"Note: forward slashes (\\) are not needed.","</li>","<li>Clearing the filters by clicking the ",'<i data-target=".clear-filters-link">"Clear filters" link</i>.',"</li>","</ul>"].join("")),"</p>","<p>",(0,h.default)(["To unpair individual dataset pairs, click the ",'<i data-target=".unpair-btn">unpair buttons ( <span class="fa fa-unlink"></span> )</i>. ','Click the <i data-target=".unpair-all-link">"Unpair all" link</i> to unpair all pairs.'].join("")),"</p>","<p>",(0,h.default)(['You can include or remove the file extensions (e.g. ".fastq") from your pair names by toggling the ','<i data-target=".remove-extensions-prompt">"Remove file extensions from pair names?"</i> control.'].join("")),"</p>","<p>",(0,h.default)(['Once your collection is complete, enter a <i data-target=".collection-name">name</i> and ','click <i data-target=".create-collection">"Create list"</i>. ',"(Note: you do not have to pair all unpaired datasets to finish.)"].join("")),"</p>"].join(""))})}),m=function(e,t){var i,a=jQuery.Deferred();if(t=_.defaults(t||{},{datasets:e,oncancel:function(){Galaxy.modal.hide(),a.reject("cancelled")},oncreate:function(e,t){Galaxy.modal.hide(),a.resolve(t)},title:(0,h.default)("Create a collection of paired datasets")}),!window.Galaxy||!Galaxy.modal)throw new Error("Galaxy or Galaxy.modal not found");return i=new f(t),Galaxy.modal.show({title:t.title,body:i.$el,width:"80%",height:"800px",closing_events:!0}),i.render(),window.creator=i,a};e.default={PairedCollectionCreator:f,pairedCollectionCreatorModal:m,createListOfPairsCollection:function(e,t){var i=e.toJSON();return m(i,{historyId:e.historyId,defaultHideSourceItems:t})}}});
\ No newline at end of file
diff --git a/static/scripts/mvc/library/library-foldertoolbar-view.js b/static/scripts/mvc/library/library-foldertoolbar-view.js
index 4d56ab0eb19..ec5e855846d 100644
--- a/static/scripts/mvc/library/library-foldertoolbar-view.js
+++ b/static/scripts/mvc/library/library-foldertoolbar-view.js
@@ -1 +1 @@
-define("mvc/library/library-foldertoolbar-view",["exports","utils/localization","utils/utils","libs/toastr","mvc/library/library-model","mvc/ui/ui-select","libs/jquery/jstree"],function(e,t,i,a,o,s){"use strict";function l(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(e,"__esModule",{value:!0});var r=l(t),n=l(i),d=l(a),c=l(o),p=l(s),h=Backbone.View.extend({el:"#center",events:{"click #toolbtn_create_folder":"createFolderFromModal","click #toolbtn_bulk_import":"modalBulkImport","click #include_deleted_datasets_chk":"checkIncludeDeleted","click #toolbtn_bulk_delete":"deleteSelectedItems","click .toolbtn-show-locinfo":"showLocInfo","click .page_size_prompt":"showPageSizePrompt"},defaults:{can_add_library_item:!1,contains_file_or_folder:!1,chain_call_control:{total_number:0,failed_number:0},disabled_jstree_element:"folders"},modal:null,jstree:null,histories:null,select_genome:null,select_extension:null,list_extensions:[],auto:{id:"auto",text:"Auto-detect",description:"This system will try to detect the file type automatically. If your file is not detected properly as one of the known formats, it most likely means that it has some format problems (e.g., different number of columns on different rows). You can still coerce the system to set your data to the format you think it should be. You can also upload compressed files, which will automatically be decompressed."},list_genomes:[],initialize:function(e){this.options=_.defaults(e||{},this.defaults),this.fetchExtAndGenomes(),this.render()},render:function(e){this.options=_.extend(this.options,e);var t=this.templateToolBar(),i={id:this.options.id,is_admin:!1,is_anonym:!0,mutiple_add_dataset_options:!1};Galaxy.user&&(i.is_admin=Galaxy.user.isAdmin(),i.is_anonym=Galaxy.user.isAnonymous(),null===Galaxy.config.user_library_import_dir&&!1===Galaxy.config.allow_library_path_paste&&null===Galaxy.config.library_import_dir||(i.mutiple_add_dataset_options=!0)),this.$el.html(t(i))},renderPaginator:function(e){this.options=_.extend(this.options,e);var t=this.templatePaginator();$("body").find(".folder-paginator").html(t({id:this.options.id,show_page:parseInt(this.options.show_page),page_count:parseInt(this.options.page_count),total_items_count:this.options.total_items_count,items_shown:this.options.items_shown,folder_page_size:Galaxy.libraries.preferences.get("folder_page_size")}))},configureElements:function(e){this.options=_.extend(this.options,e),!0===this.options.can_add_library_item?$(".add-library-items").show():$(".add-library-items").hide(),!0===this.options.contains_file_or_folder&&Galaxy.user?Galaxy.user.isAnonymous()?($(".dataset-manipulation").show(),$(".logged-dataset-manipulation").hide()):($(".logged-dataset-manipulation").show(),$(".dataset-manipulation").show()):($(".logged-dataset-manipulation").hide(),$(".dataset-manipulation").hide()),this.$el.find("[data-toggle]").tooltip()},createFolderFromModal:function(e){e.preventDefault(),e.stopPropagation();var t=this,i=this.templateNewFolderInModal();this.modal=Galaxy.modal,this.modal.show({closing_events:!0,title:(0,r.default)("Create New Folder"),body:i(),buttons:{Create:function(){t.create_new_folder_event()},Close:function(){Galaxy.modal.hide()}}})},create_new_folder_event:function(){var e=this.serialize_new_folder();if(this.validate_new_folder(e)){var t,i=new c.default.FolderAsModel,a=Backbone.history.fragment.split("/");t=a.indexOf("page")>-1?a[a.length-3]:a[a.length-1],i.url=i.urlRoot+t,i.save(e,{success:function(e){Galaxy.modal.hide(),d.default.success("Folder created."),e.set({type:"folder"}),Galaxy.libraries.folderListView.collection.add(e)},error:function(e,t){Galaxy.modal.hide(),void 0!==t.responseJSON?d.default.error(t.responseJSON.err_msg):d.default.error("An error occurred.")}})}else d.default.error("Folder's name is missing.");return!1},serialize_new_folder:function(){return{name:$("input[name='Name']").val(),description:$("input[name='Description']").val()}},validate_new_folder:function(e){return""!==e.name},modalBulkImport:function(){if(0===this.findCheckedRows().length)d.default.info("You must select some datasets first.");else{var e=this;this.histories=new c.default.GalaxyHistories,this.histories.fetch().done(function(){var t=e.templateBulkImportInModal();e.modal=Galaxy.modal,e.modal.show({closing_events:!0,title:(0,r.default)("Import into History"),body:t({histories:e.histories.models}),buttons:{Import:function(){e.importAllIntoHistory()},Close:function(){Galaxy.modal.hide()}}})}).fail(function(e,t){void 0!==t.responseJSON?d.default.error(t.responseJSON.err_msg):d.default.error("An error occurred.")})}},importAllIntoHistory:function(){this.modal.disableButton("Import");var e=this.modal.$("input[name=history_name]").val(),t=this;if(""!==e)$.post(Galaxy.root+"api/histories",{name:e}).done(function(e){t.options.last_used_history_id=e.id,t.processImportToHistory(e.id,e.name)}).fail(function(e,t,i){d.default.error("An error occurred.")}).always(function(){t.modal.enableButton("Import")});else{var i=$("select[name=dataset_import_bulk] option:selected").val();this.options.last_used_history_id=i;var a=$("select[name=dataset_import_bulk] option:selected").text();this.processImportToHistory(i,a),this.modal.enableButton("Import")}},processImportToHistory:function(e,t){var i=[],a=[];this.findCheckedRows().each(function(){var e=$(this).closest("tr").data("id");"F"==e.substring(0,1)?a.push(e):i.push(e)});for(var o=[],s=i.length-1;s>=0;s--){var l=i[s];(n=new c.default.HistoryItem).url=n.urlRoot+e+"/contents",n.content=l,n.source="library",o.push(n)}for(s=a.length-1;s>=0;s--){var r=a[s],n=new c.default.HistoryItem;n.url=n.urlRoot+e+"/contents",n.content=r,n.source="library_folder",o.push(n)}this.initChainCallControl({length:o.length,action:"to_history",history_name:t}),jQuery.getJSON(Galaxy.root+"history/set_as_current?id="+e),this.chainCallImportingIntoHistory(o,t)},updateProgress:function(){this.progress+=this.progressStep,$(".progress-bar-import").width(Math.round(this.progress)+"%");var e=Math.round(this.progress)+"% Complete";$(".completion_span").text(e)},download:function(e,t){var i=[],a=[];this.findCheckedRows().each(function(){var e=$(this).closest("tr").data("id");"F"==e.substring(0,1)?a.push(e):i.push(e)});var o=Galaxy.root+"api/libraries/datasets/download/"+t,s={ld_ids:i,folder_ids:a};this.processDownload(o,s,"get")},processDownload:function(e,t,i){if(e&&t){t="string"==typeof t?t:$.param(t);var a="";$.each(t.split("&"),function(){var e=this.split("=");a+='<input type="hidden" name="'+e[0]+'" value="'+e[1]+'" />'}),$('<form action="'+e+'" method="'+(i||"post")+'">'+a+"</form>").appendTo("body").submit().remove(),d.default.info("Your download will begin soon.")}else d.default.error("An error occurred.")},addFilesFromHistoryModal:function(){this.histories=new c.default.GalaxyHistories;var e=this;this.histories.fetch().done(function(){e.modal=Galaxy.modal;var t=e.templateAddFilesFromHistory();e.modal.show({closing_events:!0,title:(0,r.default)("Adding datasets from your history"),body:t({histories:e.histories.models}),buttons:{Add:function(){e.addAllDatasetsFromHistory()},Close:function(){Galaxy.modal.hide()}},closing_callback:function(){Galaxy.libraries.library_router.navigate("folders/"+e.id,{trigger:!0})}}),e.fetchAndDisplayHistoryContents(e.histories.models[0].id),$("#dataset_add_bulk").change(function(t){e.fetchAndDisplayHistoryContents(t.target.value)})}).fail(function(e,t){void 0!==t.responseJSON?d.default.error(t.responseJSON.err_msg):d.default.error("An error occurred.")})},importFilesFromPathModal:function(){var e=this;this.modal=Galaxy.modal;var t=this.templateImportPathModal();this.modal.show({closing_events:!0,title:(0,r.default)("Please enter paths to import"),body:t({}),buttons:{Import:function(){e.importFromPathsClicked(e)},Close:function(){Galaxy.modal.hide()}},closing_callback:function(){Galaxy.libraries.library_router.navigate("folders/"+e.id,{trigger:!0})}}),this.renderSelectBoxes()},fetchExtAndGenomes:function(){var e=this;n.default.get({url:Galaxy.root+"api/datatypes?extension_only=False",success:function(t){e.list_extensions=[];for(var i in t)e.list_extensions.push({id:t[i].extension,text:t[i].extension,description:t[i].description,description_url:t[i].description_url});e.list_extensions.sort(function(e,t){return e.id>t.id?1:e.id<t.id?-1:0}),e.list_extensions.unshift(e.auto)},cache:!0}),n.default.get({url:Galaxy.root+"api/genomes",success:function(t){e.list_genomes=[];for(var i in t)e.list_genomes.push({id:t[i][1],text:t[i][0]});e.list_genomes.sort(function(e,t){return e.id>t.id?1:e.id<t.id?-1:0})},cache:!0})},renderSelectBoxes:function(){var e=this;this.select_genome=new p.default.View({css:"library-genome-select",data:e.list_genomes,container:Galaxy.modal.$el.find("#library_genome_select"),value:"?"}),this.select_extension=new p.default.View({css:"library-extension-select",data:e.list_extensions,container:Galaxy.modal.$el.find("#library_extension_select"),value:"auto"})},importFilesFromGalaxyFolderModal:function(e){var t=this,i=this.templateBrowserModal();this.modal=Galaxy.modal,this.modal.show({closing_events:!0,title:(0,r.default)("Please select folders or files"),body:i({}),buttons:{Import:function(){t.importFromJstreePath(t,e)},Close:function(){Galaxy.modal.hide()}},closing_callback:function(){Galaxy.libraries.library_router.navigate("folders/"+t.id,{trigger:!0})}}),$(".libimport-select-all").bind("click",function(){$("#jstree_browser").jstree("check_all")}),$(".libimport-select-none").bind("click",function(){$("#jstree_browser").jstree("uncheck_all")}),this.renderSelectBoxes(),e.disabled_jstree_element="folders",this.renderJstree(e),$("input[type=radio]").change(function(i){"jstree-disable-folders"===i.target.value?(e.disabled_jstree_element="folders",t.renderJstree(e),$(".jstree-folders-message").hide(),$(".jstree-preserve-structure").hide(),$(".jstree-files-message").show()):"jstree-disable-files"===i.target.value&&($(".jstree-files-message").hide(),$(".jstree-folders-message").show(),$(".jstree-preserve-structure").show(),e.disabled_jstree_element="files",t.renderJstree(e))})},renderJstree:function(e){this.options=_.extend(this.options,e);var t=e.source||"userdir",i=this.options.disabled_jstree_element;this.jstree=new c.default.Jstree,this.jstree.url=this.jstree.urlRoot+"?target="+t+"&format=jstree&disable="+i,this.jstree.fetch({success:function(e,t){$("#jstree_browser").jstree("destroy"),$("#jstree_browser").jstree({core:{data:e},plugins:["types","checkbox"],types:{folder:{icon:"jstree-folder"},file:{icon:"jstree-file"}},checkbox:{three_state:!1}})},error:function(e,t){void 0!==t.responseJSON?404001===t.responseJSON.err_code?d.default.warning(t.responseJSON.err_msg):d.default.error(t.responseJSON.err_msg):d.default.error("An error occurred.")}})},importFromPathsClicked:function(){var e=this.modal.$el.find(".preserve-checkbox").is(":checked"),t=this.modal.$el.find(".link-checkbox").is(":checked"),i=this.modal.$el.find(".spacetab-checkbox").is(":checked"),a=this.modal.$el.find(".posix-checkbox").is(":checked"),o=this.modal.$el.find(".tag-files").is(":checked"),s=this.select_extension.value(),l=this.select_genome.value(),r=$("textarea#import_paths").val(),n=[];if(r){this.modal.disableButton("Import");for(var c=(r=r.split("\n")).length-1;c>=0;c--){var p=r[c].trim();0!==p.length&&n.push(p)}this.initChainCallControl({length:n.length,action:"adding_datasets"}),this.chainCallImportingFolders({paths:n,preserve_dirs:e,link_data:t,space_to_tab:i,to_posix_lines:a,source:"admin_path",file_type:s,tag_using_filenames:o,dbkey:l})}else d.default.info("Please enter a path relative to Galaxy root.")},initChainCallControl:function(e){var t;switch(e.action){case"adding_datasets":t=this.templateAddingDatasetsProgressBar(),this.modal.$el.find(".modal-body").html(t({folder_name:this.options.folder_name}));break;case"deleting_datasets":t=this.templateDeletingItemsProgressBar(),this.modal.$el.find(".modal-body").html(t());break;case"to_history":t=this.templateImportIntoHistoryProgressBar(),this.modal.$el.find(".modal-body").html(t({history_name:e.history_name}));break;default:Galaxy.emit.error("Wrong action specified.","datalibs")}this.progress=0,this.progressStep=100/e.length,this.options.chain_call_control.total_number=e.length,this.options.chain_call_control.failed_number=0},importFromJstreePath:function(e,t){var i=$("#jstree_browser").jstree().get_selected(!0),a=_.filter(i,function(e){return 0==e.state.disabled}),o=this.modal.$el.find(".preserve-checkbox").is(":checked"),s=this.modal.$el.find(".link-checkbox").is(":checked"),l=this.modal.$el.find(".spacetab-checkbox").is(":checked"),r=this.modal.$el.find(".posix-checkbox").is(":checked"),n=this.select_extension.value(),c=this.select_genome.value(),p=this.modal.$el.find(".tag-files").is(":checked"),h=a[0].type,u=[];if(a.length<1)d.default.info("Please select some items first.");else{this.modal.disableButton("Import");for(var f=a.length-1;f>=0;f--)void 0!==a[f].li_attr.full_path&&u.push(a[f].li_attr.full_path);if(this.initChainCallControl({length:u.length,action:"adding_datasets"}),"folder"===h){m=t.source+"_folder";this.chainCallImportingFolders({paths:u,preserve_dirs:o,link_data:s,space_to_tab:l,to_posix_lines:r,source:m,file_type:n,dbkey:c,tag_using_filenames:p})}else if("file"===h){var m=t.source+"_file";this.chainCallImportingUserdirFiles({paths:u,file_type:n,dbkey:c,link_data:s,space_to_tab:l,to_posix_lines:r,source:m,tag_using_filenames:p})}}},fetchAndDisplayHistoryContents:function(e){var t=this;new c.default.HistoryContents({id:e}).fetch({success:function(i){var a=t.templateHistoryContents();t.histories.get(e).set({contents:i}),t.modal.$el.find("#selected_history_content").html(a({history_contents:i.models.reverse()})),t.modal.$el.find(".history-import-select-all").bind("click",function(){$("#selected_history_content [type=checkbox]").prop("checked",!0)}),t.modal.$el.find(".history-import-unselect-all").bind("click",function(){$("#selected_history_content [type=checkbox]").prop("checked",!1)})},error:function(e,t){void 0!==t.responseJSON?d.default.error(t.responseJSON.err_msg):d.default.error("An error occurred.")}})},addAllDatasetsFromHistory:function(){var e=this.modal.$el.find("#selected_history_content").find(":checked"),t=[],i=[],a=[];if(e.length<1)d.default.info("You must select some datasets first.");else{this.modal.disableButton("Add"),e.each(function(){var e=$(this).closest("li").data("id");if(e){var a=$(this).closest("li").data("name");t.push(e),i.push(a)}});for(var o=t.length-1;o>=0;o--){var s=t[o],l=new c.default.Item;l.url=Galaxy.root+"api/folders/"+this.options.id+"/contents","collection"===i[o]?l.set({from_hdca_id:s}):l.set({from_hda_id:s}),a.push(l)}this.initChainCallControl({length:a.length,action:"adding_datasets"}),this.chainCallAddingHdas(a)}},chainCallImportingIntoHistory:function(e,t){var i=this,a=e.pop();if(void 0===a)return 0===this.options.chain_call_control.failed_number?d.default.success("Selected datasets imported into history. Click this to start analyzing it.","",{onclick:function(){window.location=Galaxy.root}}):this.options.chain_call_control.failed_number===this.options.chain_call_control.total_number?d.default.error("There was an error and no datasets were imported into history."):this.options.chain_call_control.failed_number<this.options.chain_call_control.total_number&&d.default.warning("Some of the datasets could not be imported into history. Click this to see what was imported.","",{onclick:function(){window.location=Galaxy.root}}),Galaxy.modal.hide(),!0;$.when(a.save({content:a.content,source:a.source})).done(function(){i.updateProgress(),i.chainCallImportingIntoHistory(e,t)}).fail(function(){i.options.chain_call_control.failed_number+=1,i.updateProgress(),i.chainCallImportingIntoHistory(e,t)})},chainCallImportingUserdirFiles:function(e){var t=this,i=e.paths.pop();if(void 0===i)return 0===this.options.chain_call_control.failed_number?(d.default.success("Selected files imported into the current folder"),Galaxy.modal.hide()):d.default.error("An error occured."),!0;$.when($.post(Galaxy.root+"api/libraries/datasets?encoded_folder_id="+t.id+"&source="+e.source+"&path="+i+"&file_type="+e.file_type+"&link_data="+e.link_data+"&space_to_tab="+e.space_to_tab+"&to_posix_lines="+e.to_posix_lines+"&dbkey="+e.dbkey+"&tag_using_filenames="+e.tag_using_filenames)).done(function(i){t.updateProgress(),t.chainCallImportingUserdirFiles(e)}).fail(function(){t.options.chain_call_control.failed_number+=1,t.updateProgress(),t.chainCallImportingUserdirFiles(e)})},chainCallImportingFolders:function(e){var t=this,i=e.paths.pop();if(void 0===i)return 0===this.options.chain_call_control.failed_number?(d.default.success("Selected folders and their contents imported into the current folder."),Galaxy.modal.hide()):d.default.error("An error occured."),!0;$.when($.post(Galaxy.root+"api/libraries/datasets?encoded_folder_id="+t.id+"&source="+e.source+"&path="+i+"&preserve_dirs="+e.preserve_dirs+"&link_data="+e.link_data+"&to_posix_lines="+e.to_posix_lines+"&space_to_tab="+e.space_to_tab+"&file_type="+e.file_type+"&dbkey="+e.dbkey+"&tag_using_filenames="+e.tag_using_filenames)).done(function(i){t.updateProgress(),t.chainCallImportingFolders(e)}).fail(function(){t.options.chain_call_control.failed_number+=1,t.updateProgress(),t.chainCallImportingFolders(e)})},chainCallAddingHdas:function(e){var t=this;this.added_hdas=new c.default.Folder;var i=e.pop();if(void 0===i)return 0===this.options.chain_call_control.failed_number?d.default.success("Selected datasets from history added to the folder"):this.options.chain_call_control.failed_number===this.options.chain_call_control.total_number?d.default.error("There was an error and no datasets were added to the folder."):this.options.chain_call_control.failed_number<this.options.chain_call_control.total_number&&d.default.warning("Some of the datasets could not be added to the folder"),Galaxy.modal.hide(),this.added_hdas;$.when(i.save({from_hda_id:i.get("from_hda_id")})).done(function(i){Galaxy.libraries.folderListView.collection.add(i),t.updateProgress(),t.chainCallAddingHdas(e)}).fail(function(){t.options.chain_call_control.failed_number+=1,t.updateProgress(),t.chainCallAddingHdas(e)})},chainCallDeletingItems:function(e){var t=this;this.deleted_items=new c.default.Folder;var i=e.pop();if(void 0===i)return 0===this.options.chain_call_control.failed_number?d.default.success("Selected items were deleted."):this.options.chain_call_control.failed_number===this.options.chain_call_control.total_number?d.default.error("There was an error and no items were deleted. Please make sure you have sufficient permissions."):this.options.chain_call_control.failed_number<this.options.chain_call_control.total_number&&d.default.warning("Some of the items could not be deleted. Please make sure you have sufficient permissions."),Galaxy.modal.hide(),this.deleted_items;i.destroy().done(function(a){if(Galaxy.libraries.folderListView.collection.remove(i.id),t.updateProgress(),Galaxy.libraries.folderListView.options.include_deleted){var o=null;"folder"===a.type||"LibraryFolder"===a.model_class?o=new c.default.FolderAsModel(a):"file"===a.type||"LibraryDataset"===a.model_class?o=new c.default.Item(a):(Galaxy.emit.error("Unknown library item type found.","datalibs"),Galaxy.emit.error(a.type||a.model_class,"datalibs")),Galaxy.libraries.folderListView.collection.add(o)}t.chainCallDeletingItems(e)}).fail(function(){t.options.chain_call_control.failed_number+=1,t.updateProgress(),t.chainCallDeletingItems(e)})},checkIncludeDeleted:function(e){e.target.checked?Galaxy.libraries.folderListView.fetchFolder({include_deleted:!0}):Galaxy.libraries.folderListView.fetchFolder({include_deleted:!1})},deleteSelectedItems:function(){var e=[],t=[],i=this.findCheckedRows();if(0===i.length)d.default.info("You must select at least one item for deletion.");else{var a=this.templateDeletingItemsProgressBar();this.modal=Galaxy.modal,this.modal.show({closing_events:!0,title:(0,r.default)("Deleting selected items"),body:a({}),buttons:{Close:function(){Galaxy.modal.hide()}}}),this.options.chain_call_control.total_number=0,this.options.chain_call_control.failed_number=0,i.each(function(){var i=$(this).closest("tr").data("id");void 0!==i&&("F"==i.substring(0,1)?t.push(i):e.push(i))});var o=e.length+t.length;this.progressStep=100/o,this.progress=0;for(var s=[],l=e.length-1;l>=0;l--){var n=new c.default.Item({id:e[l]});s.push(n)}for(l=t.length-1;l>=0;l--){var p=new c.default.FolderAsModel({id:t[l]});s.push(p)}this.options.chain_call_control.total_number=o,this.chainCallDeletingItems(s)}},showLocInfo:function(){var e=null,t=this;null!==Galaxy.libraries.libraryListView?(e=Galaxy.libraries.libraryListView.collection.get(this.options.parent_library_id),this.showLocInfoModal(e)):(e=new c.default.Library({id:this.options.parent_library_id})).fetch({success:function(){t.showLocInfoModal(e)},error:function(e,t){void 0!==t.responseJSON?d.default.error(t.responseJSON.err_msg):d.default.error("An error occurred.")}})},showLocInfoModal:function(e){var t=this,i=this.templateLocInfoInModal();this.modal=Galaxy.modal,this.modal.show({closing_events:!0,title:(0,r.default)("Location Details"),body:i({library:e,options:t.options}),buttons:{Close:function(){Galaxy.modal.hide()}}})},showImportModal:function(e){switch(e.source){case"history":this.addFilesFromHistoryModal();break;case"importdir":this.importFilesFromGalaxyFolderModal({source:"importdir"});break;case"path":this.importFilesFromPathModal();break;case"userdir":this.importFilesFromGalaxyFolderModal({source:"userdir"});break;default:Galaxy.libraries.library_router.back(),d.default.error("Invalid import source.")}},showPageSizePrompt:function(e){e.preventDefault();var t=prompt("How many items per page do you want to see?",Galaxy.libraries.preferences.get("folder_page_size"));null!=t&&t==parseInt(t)&&(Galaxy.libraries.preferences.set({folder_page_size:parseInt(t)}),Galaxy.libraries.folderListView.render({id:this.options.id,show_page:1}))},findCheckedRows:function(){return $("#folder_list_body").find(":checked")},templateToolBar:function(){return _.template(['<div class="library_style_container">','<div id="library_toolbar">','<form class="form-inline" role="form">',"<span><strong>DATA LIBRARIES</strong></span>",'<span class="library-paginator folder-paginator"></span>','<div class="checkbox toolbar-item logged-dataset-manipulation" style="height: 20px; display:none;">',"<label>",'<input id="include_deleted_datasets_chk" type="checkbox">include deleted</input>',"</label>","</div>",'<button style="display:none;" data-toggle="tooltip" data-placement="top" title="Create New Folder" id="toolbtn_create_folder" class="btn btn-default primary-button add-library-items toolbar-item" type="button">','<span class="fa fa-plus"></span><span class="fa fa-folder"></span>',"</button>","<% if(mutiple_add_dataset_options) { %>",'<div class="btn-group add-library-items" style="display:none;">','<button title="Add Datasets to Current Folder" id="" type="button" class="primary-button dropdown-toggle" data-toggle="dropdown">','<span class="fa fa-plus"></span><span class="fa fa-file"></span><span class="caret"></span>',"</button>",'<ul class="dropdown-menu" role="menu">','<li><a href="#folders/<%= id %>/import/history"> from History</a></li>',"<% if(Galaxy.config.user_library_import_dir !== null) { %>",'<li><a href="#folders/<%= id %>/import/userdir"> from User Directory</a></li>',"<% } %>","<% if(Galaxy.config.allow_library_path_paste) { %>",'<li class="divider"></li>','<li class="dropdown-header">Admins only</li>',"<% if(Galaxy.config.library_import_dir !== null) { %>",'<li><a href="#folders/<%= id %>/import/importdir">from Import Directory</a></li>',"<% } %>","<% if(Galaxy.config.allow_library_path_paste) { %>",'<li><a href="#folders/<%= id %>/import/path">from Path</a></li>',"<% } %>","<% } %>","</ul>","</div>","<% } else { %>",'<a  data-placement="top" title="Add Datasets to Current Folder" style="display:none;" class="btn btn-default add-library-items" href="#folders/<%= id %>/import/history" role="button">','<span class="fa fa-plus"></span><span class="fa fa-file"></span>',"</a>","<% } %>",'<button data-toggle="tooltip" data-placement="top" title="Import selected datasets into history" id="toolbtn_bulk_import" class="primary-button dataset-manipulation" style="margin-left: 0.5em; display:none;" type="button">','<span class="fa fa-book"></span>',"&nbsp;to History","</button>",'<div class="btn-group dataset-manipulation" style="margin-left: 0.5em; display:none; ">','<button title="Download selected items as archive" type="button" class="primary-button dropdown-toggle" data-toggle="dropdown">','<span class="fa fa-download"></span> Download <span class="caret"></span>',"</button>",'<ul class="dropdown-menu" role="menu">','<li><a href="#/folders/<%= id %>/download/tgz">.tar.gz</a></li>','<li><a href="#/folders/<%= id %>/download/tbz">.tar.bz</a></li>','<li><a href="#/folders/<%= id %>/download/zip">.zip</a></li>',"</ul>","</div>",'<button data-toggle="tooltip" data-placement="top" title="Mark selected items deleted" id="toolbtn_bulk_delete" class="primary-button logged-dataset-manipulation" style="margin-left: 0.5em; display:none; " type="button">','<span class="fa fa-times"></span> Delete</button>','<button data-id="<%- id %>" data-toggle="tooltip" data-placement="top" title="Show location details" class="primary-button toolbtn-show-locinfo" style="margin-left: 0.5em;" type="button">','<span class="fa fa-info-circle"></span>',"&nbsp;Details","</button>",'<span class="help-button" data-toggle="tooltip" data-placement="top" title="See this screen annotated">','<a href="https://galaxyproject.org/data-libraries/screen/folder-contents/" target="_blank">','<button class="primary-button" type="button">','<span class="fa fa-question-circle"></span>',"&nbsp;Help","</button>","</a>","</span>","</div>","</form>",'<div id="folder_items_element">',"</div>",'<div class="folder-paginator paginator-bottom"></div>',"</div>"].join(""))},templateLocInfoInModal:function(){return _.template(["<div>",'<table class="grid table table-condensed">',"<thead>",'<th style="width: 25%;">library</th>',"<th></th>","</thead>","<tbody>","<tr>","<td>name</td>",'<td><%- library.get("name") %></td>',"</tr>",'<% if(library.get("description") !== "") { %>',"<tr>","<td>description</td>",'<td><%- library.get("description") %></td>',"</tr>","<% } %>",'<% if(library.get("synopsis") !== "") { %>',"<tr>","<td>synopsis</td>",'<td><%- library.get("synopsis") %></td>',"</tr>","<% } %>",'<% if(library.get("create_time_pretty") !== "") { %>',"<tr>","<td>created</td>",'<td><span title="<%- library.get("create_time") %>"><%- library.get("create_time_pretty") %></span></td>',"</tr>","<% } %>","<tr>","<td>id</td>",'<td><%- library.get("id") %></td>',"</tr>","</tbody>","</table>",'<table class="grid table table-condensed">',"<thead>",'<th style="width: 25%;">folder</th>',"<th></th>","</thead>","<tbody>","<tr>","<td>name</td>","<td><%- options.folder_name %></td>","</tr>",'<% if(options.folder_description !== "") { %>',"<tr>","<td>description</td>","<td><%- options.folder_description %></td>","</tr>","<% } %>","<tr>","<td>id</td>","<td><%- options.id %></td>","</tr>","</tbody>","</table>","</div>"].join(""))},templateNewFolderInModal:function(){return _.template(['<div id="new_folder_modal">',"<form>",'<input type="text" name="Name" value="" placeholder="Name" autofocus>','<input type="text" name="Description" value="" placeholder="Description">',"</form>","</div>"].join(""))},templateBulkImportInModal:function(){return _.template(["<div>",'<div class="library-modal-item">',"Select history: ",'<select id="dataset_import_bulk" name="dataset_import_bulk" style="width:50%; margin-bottom: 1em; " autofocus>',"<% _.each(histories, function(history) { %>",'<option value="<%= _.escape(history.get("id")) %>"><%= _.escape(history.get("name")) %></option>',"<% }); %>","</select>","</div>",'<div class="library-modal-item">',"or create new: ",'<input type="text" name="history_name" value="" placeholder="name of the new history" style="width:50%;">',"</input>","</div>","</div>"].join(""))},templateImportIntoHistoryProgressBar:function(){return _.template(['<div class="import_text">',"Importing selected items to history <b><%= _.escape(history_name) %></b>","</div>",'<div class="progress">','<div class="progress-bar progress-bar-import" role="progressbar" aria-valuenow="0" aria-valuemin="0" aria-valuemax="100" style="width: 00%;">','<span class="completion_span">0% Complete</span>',"</div>","</div>"].join(""))},templateAddingDatasetsProgressBar:function(){return _.template(['<div class="import_text">',"Adding selected datasets to library folder <b><%= _.escape(folder_name) %></b>","</div>",'<div class="progress">','<div class="progress-bar progress-bar-import" role="progressbar" aria-valuenow="0" aria-valuemin="0" aria-valuemax="100" style="width: 00%;">','<span class="completion_span">0% Complete</span>',"</div>","</div>"].join(""))},templateDeletingItemsProgressBar:function(){return _.template(['<div class="import_text">',"</div>",'<div class="progress">','<div class="progress-bar progress-bar-import" role="progressbar" aria-valuenow="0" aria-valuemin="0" aria-valuemax="100" style="width: 00%;">','<span class="completion_span">0% Complete</span>',"</div>","</div>"].join(""))},templateBrowserModal:function(){return _.template(['<div id="file_browser_modal">','<div class="alert alert-info jstree-files-message">All files you select will be imported into the current folder ignoring their folder structure.</div>','<div class="alert alert-info jstree-folders-message" style="display:none;">All files within the selected folders and their subfolders will be imported into the current folder.</div>','<div style="margin-bottom:1em;">','<label title="Switch to selecting files" class="radio-inline import-type-switch">','<input type="radio" name="jstree-radio" value="jstree-disable-folders" checked="checked"> Choose Files',"</label>",'<label title="Switch to selecting folders" class="radio-inline import-type-switch">','<input type="radio" name="jstree-radio" value="jstree-disable-files"> Choose Folders',"</label>","</div>",'<div style="margin-bottom:1em;">','<label class="checkbox-inline jstree-preserve-structure" style="display:none;">','<input class="preserve-checkbox" type="checkbox" value="preserve_directory_structure">',"Preserve directory structure","</label>",'<label class="checkbox-inline">','<input class="link-checkbox" type="checkbox" value="link_files">',"Link files instead of copying","</label>",'<label class="checkbox-inline">','<input class="posix-checkbox" type="checkbox" value="to_posix_lines" checked="checked">',"Convert line endings to POSIX","</label>",'<label class="checkbox-inline">','<input class="spacetab-checkbox" type="checkbox" value="space_to_tab">',"Convert spaces to tabs","</label>","</div>",'<button title="Select all files" type="button" class="button primary-button libimport-select-all">',"Select all","</button>",'<button title="Select no files" type="button" class="button primary-button libimport-select-none">',"Unselect all","</button>","<hr />",'<div id="jstree_browser">',"</div>","<hr />","<p>You can set extension type and genome for all imported datasets at once:</p>","<div>",'Type: <span id="library_extension_select" class="library-extension-select" />','Genome: <span id="library_genome_select" class="library-genome-select" />',"</div>","<br>","<div>",'<label class="checkbox-inline tag-files">',"Tag datasets based on file names",'<input class="tag-files" type="checkbox" value="tag_using_filenames">',"</label>","</div>","</div>"].join(""))},templateImportPathModal:function(){return _.template(['<div id="file_browser_modal">','<div class="alert alert-info jstree-folders-message">All files within the given folders and their subfolders will be imported into the current folder.</div>','<div style="margin-bottom: 0.5em;">','<label class="checkbox-inline">','<input class="preserve-checkbox" type="checkbox" value="preserve_directory_structure">',"Preserve directory structure","</label>",'<label class="checkbox-inline">','<input class="link-checkbox" type="checkbox" value="link_files">',"Link files instead of copying","</label>","<br>",'<label class="checkbox-inline">','<input class="posix-checkbox" type="checkbox" value="to_posix_lines" checked="checked">',"Convert line endings to POSIX","</label>",'<label class="checkbox-inline">','<input class="spacetab-checkbox" type="checkbox" value="space_to_tab">',"Convert spaces to tabs","</label>","</div>",'<textarea id="import_paths" class="form-control" rows="5" placeholder="Absolute paths (or paths relative to Galaxy root) separated by newline" autofocus></textarea>',"<hr />","<p>You can set extension type and genome for all imported datasets at once:</p>","<div>",'Type: <span id="library_extension_select" class="library-extension-select" />','Genome: <span id="library_genome_select" class="library-genome-select" />',"</div>","<div>",'<label class="checkbox-inline tag-files">',"Tag datasets based on file names",'<input class="tag-files" type="checkbox" value="tag_using_filenames">',"</label>","</div>","</div>"].join(""))},templateAddFilesFromHistory:function(){return _.template(['<div id="add_files_modal">',"<div>","1.&nbsp;Select history:&nbsp;",'<select id="dataset_add_bulk" name="dataset_add_bulk" style="width:66%; "> ',"<% _.each(histories, function(history) { %>",'<option value="<%= _.escape(history.get("id")) %>"><%= _.escape(history.get("name")) %></option>',"<% }); %>","</select>","</div>","<br/>",'<div id="selected_history_content">',"</div>","</div>"].join(""))},templateHistoryContents:function(){return _.template(["<p>2.&nbsp;Choose the datasets to import:</p>","<div>",'<button title="Select all datasets" type="button" class="button primary-button history-import-select-all">',"Select all","</button>",'<button title="Select all datasets" type="button" class="button primary-button history-import-unselect-all">',"Unselect all","</button>","</div>","<br>","<ul>","<% _.each(history_contents, function(history_item) { %>",'<% if (history_item.get("deleted") != true ) { %>','<% var item_name = history_item.get("name") %>','<% if (history_item.get("type") === "collection") { %>','<% var collection_type = history_item.get("collection_type") %>','<% if (collection_type === "list") { %>','<li data-id="<%= _.escape(history_item.get("id")) %>" data-name="<%= _.escape(history_item.get("type")) %>">',"<label>",'<label title="<%= _.escape(item_name) %>">','<input style="margin: 0;" type="checkbox"> <%= _.escape(history_item.get("hid")) %>: ','<%= item_name.length > 75 ? _.escape("...".concat(item_name.substr(-75))) : _.escape(item_name) %> (Dataset Collection)',"</label>","</li>","<% } else { %>",'<li><input style="margin: 0;" type="checkbox" onclick="return false;" disabled="disabled">','<span title="You can convert this collection into a collection of type list using the Collection Tools">','<%= _.escape(history_item.get("hid")) %>: ','<%= item_name.length > 75 ? _.escape("...".concat(item_name.substr(-75))) : _.escape(item_name) %> (Dataset Collection of type <%= _.escape(collection_type) %> not supported.)',"</span>","</li>","<% } %>",'<% } else if (history_item.get("visible") === true && history_item.get("state") === "ok") { %>','<li data-id="<%= _.escape(history_item.get("id")) %>" data-name="<%= _.escape(history_item.get("type")) %>">','<label title="<%= _.escape(item_name) %>">','<input style="margin: 0;" type="checkbox"> <%= _.escape(history_item.get("hid")) %>: ','<%= item_name.length > 75 ? _.escape("...".concat(item_name.substr(-75))) : _.escape(item_name) %>',"</label>","</li>","<% } %>","<% } %>","<% }); %>","</ul>"].join(""))},templatePaginator:function(){return _.template(['<ul class="pagination pagination-sm">',"<% if ( ( show_page - 1 ) > 0 ) { %>","<% if ( ( show_page - 1 ) > page_count ) { %>",'<li><a href="#folders/<%= id %>/page/1"><span class="fa fa-angle-double-left"></span></a></li>','<li class="disabled"><a href="#folders/<%= id %>/page/<% print( show_page ) %>"><% print( show_page - 1 ) %></a></li>',"<% } else { %>",'<li><a href="#folders/<%= id %>/page/1"><span class="fa fa-angle-double-left"></span></a></li>','<li><a href="#folders/<%= id %>/page/<% print( show_page - 1 ) %>"><% print( show_page - 1 ) %></a></li>',"<% } %>","<% } else { %>",'<li class="disabled"><a href="#folders/<%= id %>/page/1"><span class="fa fa-angle-double-left"></span></a></li>','<li class="disabled"><a href="#folders/<%= id %>/page/<% print( show_page ) %>"><% print( show_page - 1 ) %></a></li>',"<% } %>",'<li class="active">','<a href="#folders/<%= id %>/page/<% print( show_page ) %>"><% print( show_page ) %></a>',"</li>","<% if ( ( show_page ) < page_count ) { %>",'<li><a href="#folders/<%= id %>/page/<% print( show_page + 1 ) %>"><% print( show_page + 1 ) %></a></li>','<li><a href="#folders/<%= id %>/page/<% print( page_count ) %>"><span class="fa fa-angle-double-right"></span></a></li>',"<% } else { %>",'<li class="disabled"><a href="#folders/<%= id %>/page/<% print( show_page  ) %>"><% print( show_page + 1 ) %></a></li>','<li class="disabled"><a href="#folders/<%= id %>/page/<% print( page_count ) %>"><span class="fa fa-angle-double-right"></span></a></li>',"<% } %>","</ul>","<span>",' <%- items_shown %> items shown <a href="" data-toggle="tooltip" data-placement="top" title="currently <%- folder_page_size %> per page" class="page_size_prompt">(change)</a>',"</span>","<span>"," <%- total_items_count %> total","</span>"].join(""))}});e.default={FolderToolbarView:h}});
\ No newline at end of file
+define("mvc/library/library-foldertoolbar-view",["exports","utils/localization","utils/utils","libs/toastr","mvc/library/library-model","mvc/ui/ui-select","mvc/collection/list-collection-creator","mvc/collection/pair-collection-creator","mvc/collection/list-of-pairs-collection-creator","mvc/history/hdca-model","libs/jquery/jstree"],function(e,t,i,o,a,s,l,r,n,d){"use strict";function c(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(e,"__esModule",{value:!0});var p=c(t),h=c(i),u=c(o),f=c(a),m=c(s),y=c(l),b=c(r),g=c(n),v=c(d),w=Backbone.View.extend({el:"#center",events:{"click .toolbtn-create-folder":"createFolderFromModal","click .toolbtn-bulk-import":"importToHistoryModal","click .include-deleted-datasets-chk":"checkIncludeDeleted","click .toolbtn-bulk-delete":"deleteSelectedItems","click .toolbtn-show-locinfo":"showLocInfo","click .page-size-prompt":"showPageSizePrompt","click .toolbtn-collection-import":"showCollectionSelect"},defaults:{can_add_library_item:!1,contains_file_or_folder:!1,chain_call_control:{total_number:0,failed_number:0},disabled_jstree_element:"folders"},modal:null,jstree:null,histories:null,select_genome:null,select_extension:null,list_extensions:[],auto:{id:"auto",text:"Auto-detect",description:"This system will try to detect the file type automatically. If your file is not detected properly as one of the known formats, it most likely means that it has some format problems (e.g., different number of columns on different rows). You can still coerce the system to set your data to the format you think it should be. You can also upload compressed files, which will automatically be decompressed."},list_genomes:[],initialize:function(e){this.options=_.defaults(e||{},this.defaults),this.fetchExtAndGenomes(),this.render()},render:function(e){this.options=_.extend(this.options,e);var t=this.templateToolBar(),i={id:this.options.id,is_admin:!1,is_anonym:!0,mutiple_add_dataset_options:!1};Galaxy.user&&(i.is_admin=Galaxy.user.isAdmin(),i.is_anonym=Galaxy.user.isAnonymous(),null===Galaxy.config.user_library_import_dir&&!1===Galaxy.config.allow_library_path_paste&&null===Galaxy.config.library_import_dir||(i.mutiple_add_dataset_options=!0)),this.$el.html(t(i))},renderPaginator:function(e){this.options=_.extend(this.options,e);var t=this.templatePaginator();$("body").find(".folder-paginator").html(t({id:this.options.id,show_page:parseInt(this.options.show_page),page_count:parseInt(this.options.page_count),total_items_count:this.options.total_items_count,items_shown:this.options.items_shown,folder_page_size:Galaxy.libraries.preferences.get("folder_page_size")}))},configureElements:function(e){this.options=_.extend(this.options,e),!0===this.options.can_add_library_item?$(".add-library-items").show():$(".add-library-items").hide(),!0===this.options.contains_file_or_folder&&Galaxy.user?Galaxy.user.isAnonymous()?($(".dataset-manipulation").show(),$(".logged-dataset-manipulation").hide()):($(".logged-dataset-manipulation").show(),$(".dataset-manipulation").show()):($(".logged-dataset-manipulation").hide(),$(".dataset-manipulation").hide()),this.$el.find("[data-toggle]").tooltip()},createFolderFromModal:function(e){var t=this;e.preventDefault(),e.stopPropagation();var i=this.templateNewFolderInModal();this.modal=Galaxy.modal,this.modal.show({closing_events:!0,title:(0,p.default)("Create New Folder"),body:i(),buttons:{Create:function(){t.createNewFolderEvent()},Close:function(){Galaxy.modal.hide()}}})},createNewFolderEvent:function(){var e=this.serializeNewFolder();if(this.validateNewFolder(e)){var t,i=new f.default.FolderAsModel,o=Backbone.history.fragment.split("/");t=o.indexOf("page")>-1?o[o.length-3]:o[o.length-1],i.url=i.urlRoot+t,i.save(e,{success:function(e){Galaxy.modal.hide(),u.default.success("Folder created."),e.set({type:"folder"}),Galaxy.libraries.folderListView.collection.add(e)},error:function(e,t){Galaxy.modal.hide(),void 0!==t.responseJSON?u.default.error(t.responseJSON.err_msg):u.default.error("An error occurred.")}})}else u.default.error("Folder's name is missing.");return!1},serializeNewFolder:function(){return{name:$("input[name='Name']").val(),description:$("input[name='Description']").val()}},validateNewFolder:function(e){return""!==e.name},importToHistoryModal:function(e){var t=this;e.preventDefault();var i=this.findCheckedRows(),o=this.templateImportIntoHistoryModal();0===i.length?u.default.info("You must select some datasets first."):this.fetchUserHistories().done(function(){t.modal=Galaxy.modal,t.modal.show({closing_events:!0,title:(0,p.default)("Import into History"),body:o({histories:t.histories.models}),buttons:{Import:function(){t.importAllIntoHistory()},Close:function(){Galaxy.modal.hide()}}})}).fail(function(e,t){void 0!==t.responseJSON?u.default.error(t.responseJSON.err_msg):u.default.error("An error occurred.")})},fetchUserHistories:function(){return this.histories=new f.default.GalaxyHistories,this.histories.fetch()},importAllIntoHistory:function(){var e=this;this.modal.disableButton("Import");var t=this.modal.$("input[name=history_name]").val();if(""!==t)this.createNewHistory(t).done(function(t){e.processImportToHistory(t.id,t.name)}).fail(function(e,t,i){u.default.error("An error occurred.")}).always(function(){e.modal.enableButton("Import")});else{var i=$("select[name=import_to_history] option:selected").val(),o=$("select[name=import_to_history] option:selected").text();this.processImportToHistory(i,o),this.modal.enableButton("Import")}},createNewHistory:function(e){return $.post(Galaxy.root+"api/histories",{name:e})},processImportToHistory:function(e,t){for(var i=this.findCheckedItems(),o=[],a=i.dataset_ids.length-1;a>=0;a--){var s=i.dataset_ids[a];(n=new f.default.HistoryItem).url=n.urlRoot+e+"/contents",n.content=s,n.source="library",o.push(n)}for(var l=i.folder_ids.length-1;l>=0;l--){var r=i.folder_ids[l],n=new f.default.HistoryItem;n.url=n.urlRoot+e+"/contents",n.content=r,n.source="library_folder",o.push(n)}this.initChainCallControl({length:o.length,action:"to_history",history_name:t}),jQuery.getJSON(Galaxy.root+"history/set_as_current?id="+e),this.chainCallImportingIntoHistory(o,t)},updateProgress:function(){this.progress+=this.progressStep,$(".progress-bar-import").width(Math.round(this.progress)+"%");var e=Math.round(this.progress)+"% Complete";$(".completion_span").text(e)},download:function(e){var t=this.findCheckedItems(),i=Galaxy.root+"api/libraries/datasets/download/"+e,o={ld_ids:t.dataset_ids,folder_ids:t.folder_ids};this.processDownload(i,o,"get")},processDownload:function(e,t,i){if(e&&t){t="string"==typeof t?t:$.param(t);var o="";$.each(t.split("&"),function(){var e=this.split("=");o+='<input type="hidden" name="'+e[0]+'" value="'+e[1]+'" />'}),$('<form action="'+e+'" method="'+(i||"post")+'">'+o+"</form>").appendTo("body").submit().remove(),u.default.info("Your download will begin soon.")}else u.default.error("An error occurred.")},addFilesFromHistoryModal:function(){var e=this;this.histories=new f.default.GalaxyHistories,this.histories.fetch().done(function(){e.modal=Galaxy.modal;var t=e.templateAddFilesFromHistory();e.modal.show({closing_events:!0,title:(0,p.default)("Adding datasets from your history"),body:t({histories:e.histories.models}),buttons:{Add:function(){e.addAllDatasetsFromHistory()},Close:function(){Galaxy.modal.hide()}},closing_callback:function(){Galaxy.libraries.library_router.navigate("folders/"+e.id,{trigger:!0})}}),e.fetchAndDisplayHistoryContents(e.histories.models[0].id),$("#dataset_add_bulk").change(function(t){e.fetchAndDisplayHistoryContents(t.target.value)})}).fail(function(e,t){void 0!==t.responseJSON?u.default.error(t.responseJSON.err_msg):u.default.error("An error occurred.")})},importFilesFromPathModal:function(){var e=this;this.modal=Galaxy.modal;var t=this.templateImportPathModal();this.modal.show({closing_events:!0,title:(0,p.default)("Please enter paths to import"),body:t({}),buttons:{Import:function(){e.importFromPathsClicked(e)},Close:function(){Galaxy.modal.hide()}},closing_callback:function(){Galaxy.libraries.library_router.navigate("folders/"+e.id,{trigger:!0})}}),this.renderSelectBoxes()},fetchExtAndGenomes:function(){var e=this;h.default.get({url:Galaxy.root+"api/datatypes?extension_only=False",success:function(t){e.list_extensions=[];for(var i in t)e.list_extensions.push({id:t[i].extension,text:t[i].extension,description:t[i].description,description_url:t[i].description_url});e.list_extensions.sort(function(e,t){return e.id>t.id?1:e.id<t.id?-1:0}),e.list_extensions.unshift(e.auto)},cache:!0}),h.default.get({url:Galaxy.root+"api/genomes",success:function(t){e.list_genomes=[];for(var i in t)e.list_genomes.push({id:t[i][1],text:t[i][0]});e.list_genomes.sort(function(e,t){return e.id>t.id?1:e.id<t.id?-1:0})},cache:!0})},renderSelectBoxes:function(){this.select_genome=new m.default.View({css:"library-genome-select",data:this.list_genomes,container:Galaxy.modal.$el.find("#library_genome_select"),value:"?"}),this.select_extension=new m.default.View({css:"library-extension-select",data:this.list_extensions,container:Galaxy.modal.$el.find("#library_extension_select"),value:"auto"})},importFilesFromGalaxyFolderModal:function(e){var t=this,i=this.templateBrowserModal();this.modal=Galaxy.modal,this.modal.show({closing_events:!0,title:(0,p.default)("Please select folders or files"),body:i({}),buttons:{Import:function(){t.importFromJstreePath(t,e)},Close:function(){Galaxy.modal.hide()}},closing_callback:function(){Galaxy.libraries.library_router.navigate("folders/"+t.id,{trigger:!0})}}),$(".libimport-select-all").bind("click",function(){$("#jstree_browser").jstree("check_all")}),$(".libimport-select-none").bind("click",function(){$("#jstree_browser").jstree("uncheck_all")}),this.renderSelectBoxes(),e.disabled_jstree_element="folders",this.renderJstree(e),$("input[type=radio]").change(function(i){"jstree-disable-folders"===i.target.value?(e.disabled_jstree_element="folders",t.renderJstree(e),$(".jstree-folders-message").hide(),$(".jstree-preserve-structure").hide(),$(".jstree-files-message").show()):"jstree-disable-files"===i.target.value&&($(".jstree-files-message").hide(),$(".jstree-folders-message").show(),$(".jstree-preserve-structure").show(),e.disabled_jstree_element="files",t.renderJstree(e))})},renderJstree:function(e){this.options=_.extend(this.options,e);var t=e.source||"userdir",i=this.options.disabled_jstree_element;this.jstree=new f.default.Jstree,this.jstree.url=this.jstree.urlRoot+"?target="+t+"&format=jstree&disable="+i,this.jstree.fetch({success:function(e,t){$("#jstree_browser").jstree("destroy"),$("#jstree_browser").jstree({core:{data:e},plugins:["types","checkbox"],types:{folder:{icon:"jstree-folder"},file:{icon:"jstree-file"}},checkbox:{three_state:!1}})},error:function(e,t){void 0!==t.responseJSON?404001===t.responseJSON.err_code?u.default.warning(t.responseJSON.err_msg):u.default.error(t.responseJSON.err_msg):u.default.error("An error occurred.")}})},importFromPathsClicked:function(){var e=this.modal.$el.find(".preserve-checkbox").is(":checked"),t=this.modal.$el.find(".link-checkbox").is(":checked"),i=this.modal.$el.find(".spacetab-checkbox").is(":checked"),o=this.modal.$el.find(".posix-checkbox").is(":checked"),a=this.modal.$el.find(".tag-files").is(":checked"),s=this.select_extension.value(),l=this.select_genome.value(),r=$("textarea#import_paths").val(),n=[];if(r){this.modal.disableButton("Import");for(var d=(r=r.split("\n")).length-1;d>=0;d--){var c=r[d].trim();0!==c.length&&n.push(c)}this.initChainCallControl({length:n.length,action:"adding_datasets"}),this.chainCallImportingFolders({paths:n,preserve_dirs:e,link_data:t,space_to_tab:i,to_posix_lines:o,source:"admin_path",file_type:s,tag_using_filenames:a,dbkey:l})}else u.default.info("Please enter a path relative to Galaxy root.")},initChainCallControl:function(e){var t;switch(e.action){case"adding_datasets":t=this.templateAddingDatasetsProgressBar(),this.modal.$el.find(".modal-body").html(t({folder_name:this.options.folder_name}));break;case"deleting_datasets":t=this.templateDeletingItemsProgressBar(),this.modal.$el.find(".modal-body").html(t());break;case"to_history":t=this.templateImportIntoHistoryProgressBar(),this.modal.$el.find(".modal-body").html(t({history_name:e.history_name}));break;default:Galaxy.emit.error("Wrong action specified.","datalibs")}this.progress=0,this.progressStep=100/e.length,this.options.chain_call_control.total_number=e.length,this.options.chain_call_control.failed_number=0},importFromJstreePath:function(e,t){var i=$("#jstree_browser").jstree().get_selected(!0),o=_.filter(i,function(e){return 0==e.state.disabled}),a=this.modal.$el.find(".preserve-checkbox").is(":checked"),s=this.modal.$el.find(".link-checkbox").is(":checked"),l=this.modal.$el.find(".spacetab-checkbox").is(":checked"),r=this.modal.$el.find(".posix-checkbox").is(":checked"),n=this.select_extension.value(),d=this.select_genome.value(),c=this.modal.$el.find(".tag-files").is(":checked"),p=o[0].type,h=[];if(o.length<1)u.default.info("Please select some items first.");else{this.modal.disableButton("Import");for(var f=o.length-1;f>=0;f--)void 0!==o[f].li_attr.full_path&&h.push(o[f].li_attr.full_path);if(this.initChainCallControl({length:h.length,action:"adding_datasets"}),"folder"===p){m=t.source+"_folder";this.chainCallImportingFolders({paths:h,preserve_dirs:a,link_data:s,space_to_tab:l,to_posix_lines:r,source:m,file_type:n,dbkey:d,tag_using_filenames:c})}else if("file"===p){var m=t.source+"_file";this.chainCallImportingUserdirFiles({paths:h,file_type:n,dbkey:d,link_data:s,space_to_tab:l,to_posix_lines:r,source:m,tag_using_filenames:c})}}},fetchAndDisplayHistoryContents:function(e){var t=this;new f.default.HistoryContents({id:e}).fetch({success:function(i){var o=t.templateHistoryContents();t.histories.get(e).set({contents:i}),t.modal.$el.find(".library_selected_history_content").html(o({history_contents:i.models.reverse()})),t.modal.$el.find(".history-import-select-all").bind("click",function(){$(".library_selected_history_content [type=checkbox]").prop("checked",!0)}),t.modal.$el.find(".history-import-unselect-all").bind("click",function(){$(".library_selected_history_content [type=checkbox]").prop("checked",!1)})},error:function(e,t){void 0!==t.responseJSON?u.default.error(t.responseJSON.err_msg):u.default.error("An error occurred.")}})},addAllDatasetsFromHistory:function(){var e=this.modal.$el.find(".library_selected_history_content").find(":checked"),t=[],i=[],o=[];if(e.length<1)u.default.info("You must select some datasets first.");else{this.modal.disableButton("Add"),e.each(function(){var e=$(this).closest("li").data("id");if(e){var o=$(this).closest("li").data("name");t.push(e),i.push(o)}});for(var a=t.length-1;a>=0;a--){var s=t[a],l=new f.default.Item;l.url=Galaxy.root+"api/folders/"+this.options.id+"/contents","collection"===i[a]?l.set({from_hdca_id:s}):l.set({from_hda_id:s}),o.push(l)}this.initChainCallControl({length:o.length,action:"adding_datasets"}),this.chainCallAddingHdas(o)}},chainCallImportingIntoHistory:function(e,t){var i=this,o=e.pop();if(void 0===o)return 0===this.options.chain_call_control.failed_number?u.default.success("Selected datasets imported into history. Click this to start analyzing it.","",{onclick:function(){window.location=Galaxy.root}}):this.options.chain_call_control.failed_number===this.options.chain_call_control.total_number?u.default.error("There was an error and no datasets were imported into history."):this.options.chain_call_control.failed_number<this.options.chain_call_control.total_number&&u.default.warning("Some of the datasets could not be imported into history. 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e=[],t=[],i=this.findCheckedRows();if(0===i.length)u.default.info("You must select at least one item for deletion.");else{var o=this.templateDeletingItemsProgressBar();this.modal=Galaxy.modal,this.modal.show({closing_events:!0,title:(0,p.default)("Deleting selected items"),body:o({}),buttons:{Close:function(){Galaxy.modal.hide()}}}),this.options.chain_call_control.total_number=0,this.options.chain_call_control.failed_number=0,i.each(function(){var i=$(this).closest("tr").data("id");void 0!==i&&("F"==i.substring(0,1)?t.push(i):e.push(i))});var a=e.length+t.length;this.progressStep=100/a,this.progress=0;for(var s=[],l=e.length-1;l>=0;l--){var r=new f.default.Item({id:e[l]});s.push(r)}for(var n=t.length-1;n>=0;n--){var d=new f.default.FolderAsModel({id:t[n]});s.push(d)}this.options.chain_call_control.total_number=a,this.chainCallDeletingItems(s)}},showLocInfo:function(){var e=this,t=null;null!==Galaxy.libraries.libraryListView?(t=Galaxy.libraries.libraryListView.collection.get(this.options.parent_library_id),this.showLocInfoModal(t)):(t=new f.default.Library({id:this.options.parent_library_id})).fetch({success:function(){e.showLocInfoModal(t)},error:function(e,t){void 0!==t.responseJSON?u.default.error(t.responseJSON.err_msg):u.default.error("An error occurred.")}})},showLocInfoModal:function(e){var t=this.templateLocInfoInModal();this.modal=Galaxy.modal,this.modal.show({closing_events:!0,title:(0,p.default)("Location Details"),body:t({library:e,options:this.options}),buttons:{Close:function(){Galaxy.modal.hide()}}})},showImportModal:function(e){switch(e.source){case"history":this.addFilesFromHistoryModal();break;case"importdir":this.importFilesFromGalaxyFolderModal({source:"importdir"});break;case"path":this.importFilesFromPathModal();break;case"userdir":this.importFilesFromGalaxyFolderModal({source:"userdir"});break;default:Galaxy.libraries.library_router.back(),u.default.error("Invalid import source.")}},showPageSizePrompt:function(e){e.preventDefault();var t=prompt("How many items per page do you want to see?",Galaxy.libraries.preferences.get("folder_page_size"));null!=t&&t==parseInt(t)&&(Galaxy.libraries.preferences.set({folder_page_size:parseInt(t)}),Galaxy.libraries.folderListView.render({id:this.options.id,show_page:1}))},findCheckedRows:function(){return $("#folder_list_body").find(":checked")},findCheckedItems:function(){var e=[],t=[];return this.findCheckedRows().each(function(){var i=$(this).closest("tr").data("id");"F"==i.substring(0,1)?e.push(i):t.push(i)}),{folder_ids:e,dataset_ids:t}},showCollectionSelect:function(e){var t=this;e.preventDefault();var i=this.findCheckedItems(),o=this.templateCollectionSelectModal();this.modal=Galaxy.modal,this.modal.show({closing_events:!0,title:"Create History Collection from Datasets",body:o({selected_datasets:i.dataset_ids.length}),buttons:{Continue:function(){t.showColectionBuilder(i.dataset_ids)},Close:function(){Galaxy.modal.hide()}}}),this.prepareCollectionTypeSelect(),this.prepareHistoryTypeSelect()},prepareCollectionTypeSelect:function(){var e=this;this.collectionType="list",this.select_collection_type=new m.default.View({css:"library-collection-type-select",container:this.modal.$el.find(".library-collection-type-select"),data:[{id:"list",text:"List"},{id:"paired",text:"Paired"},{id:"list:paired",text:"List of 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r=this.modal.$("input[name=history_name]").val();if(""!==r)this.createNewHistory(r).done(function(e){u.default.success("History created"),t.collectionImport(i,e.id,e.name)}).fail(function(e,t,i){u.default.error("An error occurred.")});else{var n=this.select_collection_history.value(),d=this.select_collection_history.text();this.collectionImport(i,n,d)}},collectionImport:function(e,t,i){var o=this,a="Creating Collection in "+i,s=void 0,l=void 0;if("list"===this.collectionType)s=y.default.ListCollectionCreator,l=function(e,i,a){return e=e.map(function(e){return{id:e.id,name:e.name,src:"ldda"}}),o.createHDCA(e,o.collectionType,i,a,t)},y.default.collectionCreatorModal(e,{creationFn:l,title:a,defaultHideSourceItems:!0},s);else if("paired"===this.collectionType)s=b.default.PairCollectionCreator,l=function(e,i,a){return 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%>","</select>","</div>",'<div class="library-modal-item">',"or create new: ",'<input type="text" name="history_name" value="" placeholder="name of the new history" style="width:50%;" />',"</div>","</div>"].join(""))},templateImportIntoHistoryProgressBar:function(){return _.template(['<div class="import_text">',"Importing selected items to history <b><%= _.escape(history_name) %></b>","</div>",'<div class="progress">','<div class="progress-bar progress-bar-import" role="progressbar" aria-valuenow="0" aria-valuemin="0" aria-valuemax="100" style="width: 00%;">','<span class="completion_span">0% Complete</span>',"</div>","</div>"].join(""))},templateAddingDatasetsProgressBar:function(){return _.template(['<div class="import_text">',"Adding selected datasets to library folder <b><%= _.escape(folder_name) %></b>","</div>",'<div class="progress">','<div class="progress-bar progress-bar-import" role="progressbar" aria-valuenow="0" aria-valuemin="0" aria-valuemax="100" style="width: 00%;">','<span class="completion_span">0% Complete</span>',"</div>","</div>"].join(""))},templateDeletingItemsProgressBar:function(){return _.template(['<div class="import_text">',"</div>",'<div class="progress">','<div class="progress-bar progress-bar-import" role="progressbar" aria-valuenow="0" aria-valuemin="0" aria-valuemax="100" style="width: 00%;">','<span class="completion_span">0% Complete</span>',"</div>","</div>"].join(""))},templateBrowserModal:function(){return _.template(['<div id="file_browser_modal">','<div class="alert alert-info jstree-files-message">All files you select will be imported into the current folder ignoring their folder structure.</div>','<div class="alert alert-info jstree-folders-message" style="display:none;">All files within the selected folders and their subfolders will be imported into the current folder.</div>','<div style="margin-bottom:1em;">','<label title="Switch to selecting files" class="radio-inline import-type-switch">','<input type="radio" name="jstree-radio" value="jstree-disable-folders" checked="checked"> Choose Files',"</label>",'<label title="Switch to selecting folders" class="radio-inline import-type-switch">','<input type="radio" name="jstree-radio" value="jstree-disable-files"> Choose Folders',"</label>","</div>",'<div style="margin-bottom:1em;">','<label class="checkbox-inline jstree-preserve-structure" style="display:none;">','<input class="preserve-checkbox" type="checkbox" value="preserve_directory_structure">',"Preserve directory structure","</label>",'<label class="checkbox-inline">','<input class="link-checkbox" type="checkbox" value="link_files">',"Link files instead of copying","</label>",'<label class="checkbox-inline">','<input class="posix-checkbox" type="checkbox" value="to_posix_lines" checked="checked">',"Convert line endings to POSIX","</label>",'<label class="checkbox-inline">','<input class="spacetab-checkbox" type="checkbox" value="space_to_tab">',"Convert spaces to tabs","</label>","</div>",'<button title="Select all files" type="button" class="button primary-button libimport-select-all">',"Select all","</button>",'<button title="Select no files" type="button" class="button primary-button libimport-select-none">',"Unselect all","</button>","<hr />",'<div id="jstree_browser">',"</div>","<hr />","<p>You can set extension type and genome for all imported datasets at once:</p>","<div>",'Type: <span id="library_extension_select" class="library-extension-select" />','Genome: <span id="library_genome_select" class="library-genome-select" />',"</div>","<br>","<div>",'<label class="checkbox-inline tag-files">',"Tag datasets based on file names",'<input class="tag-files" type="checkbox" value="tag_using_filenames">',"</label>","</div>","</div>"].join(""))},templateImportPathModal:function(){return _.template(['<div id="file_browser_modal">','<div class="alert alert-info jstree-folders-message">All files within the given folders and their subfolders will be imported into the current folder.</div>','<div style="margin-bottom: 0.5em;">','<label class="checkbox-inline">','<input class="preserve-checkbox" type="checkbox" value="preserve_directory_structure">',"Preserve directory structure","</label>",'<label class="checkbox-inline">','<input class="link-checkbox" type="checkbox" value="link_files">',"Link files instead of copying","</label>","<br>",'<label class="checkbox-inline">','<input class="posix-checkbox" type="checkbox" value="to_posix_lines" checked="checked">',"Convert line endings to POSIX","</label>",'<label class="checkbox-inline">','<input class="spacetab-checkbox" type="checkbox" value="space_to_tab">',"Convert spaces to tabs","</label>","</div>",'<textarea id="import_paths" class="form-control" rows="5" placeholder="Absolute paths (or paths relative to Galaxy root) separated by newline" autofocus></textarea>',"<hr />","<p>You can set extension type and genome for all imported datasets at once:</p>","<div>",'Type: <span id="library_extension_select" class="library-extension-select" />','Genome: <span id="library_genome_select" class="library-genome-select" />',"</div>","<div>",'<label class="checkbox-inline tag-files">',"Tag datasets based on file names",'<input class="tag-files" type="checkbox" value="tag_using_filenames">',"</label>","</div>","</div>"].join(""))},templateAddFilesFromHistory:function(){return _.template(['<div id="add_files_modal">',"<div>","1.&nbsp;Select history:&nbsp;",'<select id="dataset_add_bulk" name="dataset_add_bulk" style="width:66%; "> ',"<% _.each(histories, function(history) { %>",'<option value="<%= _.escape(history.get("id")) %>"><%= _.escape(history.get("name")) %></option>',"<% }); %>","</select>","</div>","<br/>",'<div class="library_selected_history_content">',"</div>","</div>"].join(""))},templateHistoryContents:function(){return _.template(["<p>2.&nbsp;Choose the datasets to import:</p>","<div>",'<button title="Select all datasets" type="button" class="button primary-button history-import-select-all">',"Select all","</button>",'<button title="Select all datasets" type="button" class="button primary-button history-import-unselect-all">',"Unselect all","</button>","</div>","<br>","<ul>","<% _.each(history_contents, function(history_item) { %>",'<% if (history_item.get("deleted") != true ) { %>','<% var item_name = history_item.get("name") %>','<% if (history_item.get("type") === "collection") { %>','<% var collection_type = history_item.get("collection_type") %>','<% if (collection_type === "list") { %>','<li data-id="<%= _.escape(history_item.get("id")) %>" data-name="<%= _.escape(history_item.get("type")) %>">',"<label>",'<label title="<%= _.escape(item_name) %>">','<input style="margin: 0;" type="checkbox"> <%= _.escape(history_item.get("hid")) %>: ','<%= item_name.length > 75 ? _.escape("...".concat(item_name.substr(-75))) : _.escape(item_name) %> (Dataset Collection)',"</label>","</li>","<% } else { %>",'<li><input style="margin: 0;" type="checkbox" onclick="return false;" disabled="disabled">','<span title="You can convert this collection into a collection of type list using the Collection Tools">','<%= _.escape(history_item.get("hid")) %>: ','<%= item_name.length > 75 ? _.escape("...".concat(item_name.substr(-75))) : _.escape(item_name) %> (Dataset Collection of type <%= _.escape(collection_type) %> not supported.)',"</span>","</li>","<% } %>",'<% } else if (history_item.get("visible") === true && history_item.get("state") === "ok") { %>','<li data-id="<%= _.escape(history_item.get("id")) %>" data-name="<%= _.escape(history_item.get("type")) %>">','<label title="<%= _.escape(item_name) %>">','<input style="margin: 0;" type="checkbox"> <%= _.escape(history_item.get("hid")) %>: ','<%= item_name.length > 75 ? _.escape("...".concat(item_name.substr(-75))) : _.escape(item_name) %>',"</label>","</li>","<% } %>","<% } %>","<% }); %>","</ul>"].join(""))},templatePaginator:function(){return _.template(['<ul class="pagination pagination-sm">',"<% if ( ( show_page - 1 ) > 0 ) { %>","<% if ( ( show_page - 1 ) > page_count ) { %>",'<li><a href="#folders/<%= id %>/page/1"><span class="fa fa-angle-double-left"></span></a></li>','<li class="disabled"><a href="#folders/<%= id %>/page/<% print( show_page ) %>"><% print( show_page - 1 ) %></a></li>',"<% } else { %>",'<li><a href="#folders/<%= id %>/page/1"><span class="fa fa-angle-double-left"></span></a></li>','<li><a href="#folders/<%= id %>/page/<% print( show_page - 1 ) %>"><% print( show_page - 1 ) %></a></li>',"<% } %>","<% } else { %>",'<li class="disabled"><a href="#folders/<%= id %>/page/1"><span class="fa fa-angle-double-left"></span></a></li>','<li class="disabled"><a href="#folders/<%= id %>/page/<% print( show_page ) %>"><% print( show_page - 1 ) %></a></li>',"<% } %>",'<li class="active">','<a href="#folders/<%= id %>/page/<% print( show_page ) %>"><% print( show_page ) %></a>',"</li>","<% if ( ( show_page ) < page_count ) { %>",'<li><a href="#folders/<%= id %>/page/<% print( show_page + 1 ) %>"><% print( show_page + 1 ) %></a></li>','<li><a href="#folders/<%= id %>/page/<% print( page_count ) %>"><span class="fa fa-angle-double-right"></span></a></li>',"<% } else { %>",'<li class="disabled"><a href="#folders/<%= id %>/page/<% print( show_page  ) %>"><% print( show_page + 1 ) %></a></li>','<li class="disabled"><a href="#folders/<%= id %>/page/<% print( page_count ) %>"><span class="fa fa-angle-double-right"></span></a></li>',"<% } %>","</ul>","<span>",' <%- items_shown %> items shown <a href="" data-toggle="tooltip" data-placement="top" title="currently <%- folder_page_size %> per page" class="page-size-prompt">(change)</a>',"</span>","<span>"," <%- total_items_count %> total","</span>"].join(""))},templateCollectionSelectModal:function(){return _.template(["<div>",'<div class="library-modal-item">',"<h4>Which datasets?</h4>",'<form class="form-inline">','<label class="radio-inline">','<input type="radio" name="radio_elements" id="selection_radio" value="selection" <% if (!selected_datasets) { %> disabled <% } else { %> checked <% } %> > current selection',"<% if (selected_datasets) { %>"," (<%- selected_datasets %>)","<% } %>","</label>",'<label class="radio-inline">','<input type="radio" name="radio_elements" id="folder_radio" value="folder" <% if (!selected_datasets) { %> checked <% } %> > all datasets in current folder',"</label>","</form>","</div>",'<div class="library-modal-item">',"<h4>Collection type</h4>",'<span class="library-collection-type-select"/>',"<h5>Which type to choose?</h5>","<ul>","<li>","List: Generic collection which groups any number of datasets into a set; similar to file system folder.","</li>","<li>","Paired: Simple collection containing exactly two sequence datasets; one reverse and the other forward.","</li>","<li>","List of Pairs: Advanced collection containing any number of Pairs; imagine as Pair-type collections inside of a List-type collection.","</li>","</ul>","</div>",'<div class="library-modal-item">',"<h4>Select history</h4>",'<span class="library-collection-history-select"/>'," or create new: ",'<input type="text" name="history_name" value="" placeholder="name of the new history" />',"</div>","</div>"].join(""))}});e.default={FolderToolbarView:w}});
\ No newline at end of file
diff --git a/static/scripts/mvc/ui/ui-modal.js b/static/scripts/mvc/ui/ui-modal.js
index 88752bdfd5f..6b71d939485 100644
--- a/static/scripts/mvc/ui/ui-modal.js
+++ b/static/scripts/mvc/ui/ui-modal.js
@@ -1 +1 @@
-define("mvc/ui/ui-modal",["exports"],function(t){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var i=t.View=Backbone.View.extend({className:"ui-modal",optionsDefault:{container:"body",title:"ui-modal",cls:"ui-modal",body:"",backdrop:!0,height:null,width:null,closing_events:!1,closing_callback:null,title_separator:!0},buttonList:{},initialize:function(t){this.options=_.defaults(t||{},this.optionsDefault),$(this.options.container).prepend(this.el),t&&this.render()},show:function(t){if(t&&(this.options=_.defaults(t,this.optionsDefault),this.render()),!this.visible&&(this.visible=!0,this.$el.fadeIn("fast"),this.options.closing_events)){var i=this;$(document).on("keyup.ui-modal",function(t){27==t.keyCode&&i.hide(!0)}),this.$backdrop.on("click",function(){i.hide(!0)})}},hide:function(t){this.visible=!1,this.$el.fadeOut("fast"),this.options.closing_callback&&this.options.closing_callback(t),$(document).off("keyup.ui-modal"),this.$backdrop.off("click")},render:function(){var t=this;if(this.$el.html(this._template()),this.$header=this.$(".modal-header"),this.$dialog=this.$(".modal-dialog"),this.$body=this.$(".modal-body"),this.$footer=this.$(".modal-footer"),this.$backdrop=this.$(".modal-backdrop"),this.$buttons=this.$(".buttons"),"progress"==this.options.body&&(this.options.body=$('<div class="progress progress-striped active"><div class="progress-bar progress-bar-info" style="width:100%"/></div>')),this.$el.removeClass().addClass("modal").addClass(this.options.cls),this.$header.find(".title").html(this.options.title),this.$body.html(this.options.body),this.$buttons.empty(),this.buttonList={},this.options.buttons){var i=0;$.each(this.options.buttons,function(s,o){var e=$("<button/>").attr("id","button-"+i++).text(s).click(o);t.$buttons.append(e).append("&nbsp;"),t.buttonList[s]=e})}else this.$footer.hide();this.$backdrop[this.options.backdrop&&"addClass"||"removeClass"]("in"),this.$header[!this.options.title_separator&&"addClass"||"removeClass"]("no-separator"),this.$body.removeAttr("style"),this.options.height?(this.$body.css("height",this.options.height),this.$body.css("overflow","hidden")):this.$body.css("max-height",$(window).height()/2),this.options.width&&this.$dialog.css("width",this.options.width)},getButton:function(t){return this.buttonList[t]},enableButton:function(t){this.getButton(t).prop("disabled",!1)},disableButton:function(t){this.getButton(t).prop("disabled",!0)},showButton:function(t){this.getButton(t).show()},hideButton:function(t){this.getButton(t).hide()},scrollTop:function(){return this.$body.scrollTop()},_template:function(){return'<div class="modal-backdrop fade"/><div class="modal-dialog"><div class="modal-content"><div class="modal-header"><h4 class="title"/></div><div class="modal-body"/><div class="modal-footer"><div class="buttons"/></div></div></div>'}});t.default={View:i}});
\ No newline at end of file
+define("mvc/ui/ui-modal",["exports"],function(t){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var i=t.View=Backbone.View.extend({className:"ui-modal",optionsDefault:{container:"body",title:"ui-modal",cls:"ui-modal",body:"",backdrop:!0,height:null,width:null,closing_events:!1,closing_callback:null,title_separator:!0},buttonList:{},initialize:function(t){this.options=_.defaults(t||{},this.optionsDefault),$(this.options.container).prepend(this.el),t&&this.render()},show:function(t){var i=this;t&&(this.options=_.defaults(t,this.optionsDefault),this.render()),this.visible||(this.visible=!0,this.$el.fadeIn("fast")),this.options.closing_events&&($(document).on("keyup.ui-modal",function(t){27==t.keyCode&&i.hide(!0)}),this.$backdrop.on("click",function(){i.hide(!0)}))},hide:function(t){this.visible=!1,this.$el.fadeOut("fast"),this.options.closing_callback&&this.options.closing_callback(t),$(document).off("keyup.ui-modal"),this.$backdrop.off("click")},render:function(){var t=this;if(this.$el.html(this._template()),this.$header=this.$(".modal-header"),this.$dialog=this.$(".modal-dialog"),this.$body=this.$(".modal-body"),this.$footer=this.$(".modal-footer"),this.$backdrop=this.$(".modal-backdrop"),this.$buttons=this.$(".buttons"),"progress"==this.options.body&&(this.options.body=$('<div class="progress progress-striped active"><div class="progress-bar progress-bar-info" style="width:100%"/></div>')),this.$el.removeClass().addClass("modal").addClass(this.options.cls),this.$header.find(".title").html(this.options.title),this.$body.html(this.options.body),this.$buttons.empty(),this.buttonList={},this.options.buttons){var i=0;$.each(this.options.buttons,function(s,o){var e=$("<button/>").attr("id","button-"+i++).text(s).click(o);t.$buttons.append(e).append("&nbsp;"),t.buttonList[s]=e})}else this.$footer.hide();this.$backdrop[this.options.backdrop&&"addClass"||"removeClass"]("in"),this.$header[!this.options.title_separator&&"addClass"||"removeClass"]("no-separator"),this.$body.removeAttr("style"),this.options.height?(this.$body.css("height",this.options.height),this.$body.css("overflow","hidden")):this.$body.css("max-height",$(window).height()/2),this.options.width&&this.$dialog.css("width",this.options.width)},getButton:function(t){return this.buttonList[t]},enableButton:function(t){this.getButton(t).prop("disabled",!1)},disableButton:function(t){this.getButton(t).prop("disabled",!0)},showButton:function(t){this.getButton(t).show()},hideButton:function(t){this.getButton(t).hide()},scrollTop:function(){return this.$body.scrollTop()},_template:function(){return'<div class="modal-backdrop fade"/><div class="modal-dialog"><div class="modal-content"><div class="modal-header"><h4 class="title"/></div><div class="modal-body"/><div class="modal-footer"><div class="buttons"/></div></div></div>'}});t.default={View:i}});
\ No newline at end of file
diff --git a/static/style/blue/base.css b/static/style/blue/base.css
index a1a4e5f3416..687e189c1ec 100644
--- a/static/style/blue/base.css
+++ b/static/style/blue/base.css
@@ -1,4 +1,4 @@
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.buttons{width:100%;float:none}.error-modal .modal-content .modal-footer .buttons>*{float:right}.toolMenuContainer{color:#000000;background:#DFE5F9;min-height:100%;padding:35px 10px}div.toolSectionPad{margin:0;padding:0;height:5px;font-size:0}div.toolSectionWrapper{margin-bottom:5px}div.toolSectionDetailsInner{margin-left:5px;margin-right:5px}div.toolSectionTitle{font-weight:bold}div.toolPanelLabel{padding-top:10px;padding-bottom:5px;font-weight:bold;color:gray;text-transform:uppercase}div.toolTitle{padding-top:5px;padding-bottom:5px;margin-left:16px;margin-right:10px;display:list-item;list-style:square outside}div.toolTitle .labels{float:right;margin-left:2px}div a.tool-link{text-decoration:none;display:block}div a.tool-link span.tool-old-link{text-decoration:underline}div.toolSectionBody div.toolPanelLabel{padding-top:5px;padding-bottom:5px;margin-left:16px;margin-right:10px;display:list-item;list-style:none outside}div.toolTitleNoSection{padding-bottom:5px;font-weight:bold}#tool-search{padding-top:5px;padding-bottom:10px;position:fixed;top:65px;width:210px}#loading_indicator{position:fixed;right:10px;top:10px;height:32px;width:32px;display:none;background:url(largespinner.gif)}#content_table td{text-align:right;white-space:nowrap;padding:2px 10px}#content_table th{white-space:nowrap;padding:2px 10px}#content_table td.stringalign{text-align:left}#content_table .dark_row{background-color:#DDD}#content_table th{background-color:#AAA}.toolMenuAndView .toolForm{float:left;background-color:white;margin:10px}.text-and-autocomplete-select{background:none;position:relative;padding-right:18px}.text-and-autocomplete-select:after{margin-top:6px;position:absolute;top:2px;right:6px;width:10px;height:10px;display:inline-block;width:0;height:0;margin-left:2px;vertical-align:middle;border-top:4px solid #000000;border-right:4px solid transparent;border-left:4px solid transparent;border-bottom:0 dotted;content:"";opacity:80;-ms-filter:progid:DXImageTransform.Microsoft.Alpha(Opacity=8000);filter:alpha(opacity=8000)}.btn-default .text-and-autocomplete-select:after{border-top-color:#333}.btn-primary .text-and-autocomplete-select:after,.btn-success .text-and-autocomplete-select:after,.btn-warning .text-and-autocomplete-select:after,.btn-danger .text-and-autocomplete-select:after,.btn-info .text-and-autocomplete-select:after{border-top-color:#fff}.icon-button.general-question{background:url(question-octagon-frame.png) no-repeat;float:right;margin-top:3px;margin-right:4px}.icon-button.tag-question{background:url(question-balloon.png) no-repeat;float:right;margin-top:3px;margin-right:4px}.icon-button.tag{background-image:url(sprite-fugue.png);background-position:-16px -112px;width:16px;height:16px}.icon-button.tags{background-image:url(sprite-fugue.png);background-position:-32px -112px;width:16px;height:16px}.icon-button.tag--plus{background-image:url(sprite-fugue.png);background-position:0 -112px;width:16px;height:16px}.icon-button.toggle-expand{background-image:url(sprite-fugue.png);background-position:-80px -112px;width:16px;height:16px}.icon-button.toggle{background-image:url(sprite-fugue.png);background-position:-48px -112px;width:16px;height:16px}.icon-button.toggle:hover{background-image:url(sprite-fugue.png);background-position:-96px -112px;width:16px;height:16px}.icon-button.arrow-circle{background-image:url(sprite-fugue.png);background-position:-32px 0;width:16px;height:16px}.icon-button.chevron{background-image:url(sprite-fugue.png);background-position:-32px -64px;width:16px;height:16px}.icon-button.bug{background-image:url(sprite-fugue.png);background-position:-64px -32px;width:16px;height:16px}.icon-button.disk{background-image:url(sprite-fugue.png);background-position:-16px -80px;width:16px;height:16px}.icon-button.information{background-image:url(sprite-fugue.png);background-position:-96px -80px;width:16px;height:16px}.icon-button.annotate{background-image:url(sprite-fugue.png);background-position:-112px -96px;width:16px;height:16px}.icon-button.go-to-full-screen{background-image:url(sprite-fugue.png);background-position:0 0;width:16px;height:16px}.icon-button.import{background-image:url(sprite-fugue.png);background-position:-112px -80px;width:16px;height:16px}.icon-button.plus-button{background-image:url(sprite-fugue.png);background-position:-112px -48px;width:16px;height:16px}.icon-button.plus-button:hover{background-image:url(sprite-fugue.png);background-position:-112px -64px;width:16px;height:16px}.icon-button.gear{background-image:url(sprite-fugue.png);background-position:-96px 0;width:16px;height:16px}.icon-button.chart_curve{background-image:url(sprite-fugue.png);background-position:-64px -48px;width:16px;height:16px}.icon-button.disk--arrow{background-image:url(sprite-fugue.png);background-position:-80px -64px;width:16px;height:16px}.icon-button.disk--arrow:hover{background-image:url(sprite-fugue.png);background-position:0 -80px;width:16px;height:16px}.icon-button.cross-circle{background-image:url(sprite-fugue.png);background-position:-80px 0;width:16px;height:16px}.icon-button.cross-circle:hover{background-image:url(sprite-fugue.png);background-position:-80px -16px;width:16px;height:16px}.icon-button.arrow-split{background-image:url(sprite-fugue.png);background-position:-16px -32px;width:16px;height:16px}.icon-button.arrow-split:hover{background-image:url(sprite-fugue.png);background-position:-32px -32px;width:16px;height:16px}.icon-button.chevron-expand:hover{background-image:url(sprite-fugue.png);background-position:-16px -64px;width:16px;height:16px}.icon-button.chevron-expand{background-image:url(sprite-fugue.png);background-position:0 -64px;width:16px;height:16px}.noscript-overlay{position:absolute;width:100%;height:100%;background:white;z-index:10000}.noscript-overlay>div{margin:64px 0 0 64px}#for_bears{display:none}.chat-modal{overflow:hidden}.modal-header-body{padding:2px}.communication-iframe{width:100%;height:100%}.close-modal{float:right;cursor:pointer}.expand-compress-modal{cursor:pointer;font-size:12px;margin-left:93.2%}#change_password .progress,#registrationForm .progress{width:200px;margin-left:20px}#change_password .progress-bar,#registrationForm .progress-bar{color:black;text-align:left}.wf{overflow:auto}.wf th{white-space:nowrap}.wf td:first-child{white-space:nowrap}.wf-action span{padding-left:3px;font-family:"Lucida Grande",verdana,arial,helvetica,sans-serif}.wf-nodata{padding-left:1%}.wf-back{margin-left:.5%}.other-options{margin-bottom:2%}.hidden_description_layer{position:absolute;top:0;bottom:0;left:0;right:0;background:rgba(200,200,200,0.6);visibility:hidden;opacity:0;font-size:2em;display:flex;align-items:center;justify-content:center;transition:opacity .2s,visibility .2s}.hidden_description_layer.dragover{visibility:visible;opacity:1}[v-cloak]{display:none}
\ No newline at end of file
diff --git a/static/style/blue/library.css b/static/style/blue/library.css
index a0915bbc0c9..d737e2e8183 100644
--- a/static/style/blue/library.css
+++ b/static/style/blue/library.css
@@ -1 +1 @@
-a{text-decoration:underline}label{font-weight:normal}.library_style_container{width:95%;margin:auto;margin-top:2em;overflow:auto !important}.library_style_container .fa{font-size:12px}.library_style_container .fa-globe,.library_style_container .fa-shield,.library_style_container .fa-key,.library_style_container .fa-ban{font-size:initial;margin-left:.6em}.library_style_container .libraryRow{background-color:#ebd9b2}.library_style_container .datasetHighlighted{background-color:#f9f9f9}.library_style_container .libraryItemDeleted-True{font-style:italic}.library_style_container div.libraryItemBody{padding:4px 4px 2px 4px}.library_style_container li.folderRow,.library_style_container li.datasetRow{border-top:solid 1px #c6bfa8}.library_style_container li.folderRow:hover,.library_style_container li.datasetRow:hover{background-color:#f9f9f9}.library_style_container td.right-center{vertical-align:middle !important;text-align:right}.library_style_container .library-genome-select{max-width:350px}.library_style_container .library-extension-select{max-width:140px}.library_style_container .library_table td{border-top:1px solid #5f6990 !important}.library_style_container .library_table th{border-bottom:2px solid #5f6990 !important}.library_style_container .library_table a{color:#0A143D}.library_style_container .library_table a:hover{color:maroon}.library_style_container tr.light td{background-color:white;color:black}.library_style_container tr.light:hover td{background-color:#f5e8cc}.library_style_container tr.dark td{background-color:#d6b161;color:white}.library_style_container tr.dark:hover td{background-color:#ebd4a4;color:white}.library_style_container a.dark{color:white}.library_style_container .dataset_table tr,.library_style_container .dataset_table th,.library_style_container .dataset_table td{border:none}.library_style_container .dataset_table .dataset-first-column{width:30%}.library_style_container th.button_heading{width:2em}.library_style_container .bigdrop.select2-container .select2-results{max-height:300px}.library_style_container .bigdrop .select2-results{max-height:300px}.library_style_container .select2-container-multi{width:100%}.library_style_container .roles-selection{width:66%}.library_style_container #library_toolbar{margin-bottom:.5em}.library_style_container #library_toolbar span{margin-right:.2em}.library_style_container #library_toolbar .toolbar-item{margin-left:1em}.library_style_container #libraries_element button,.library_style_container #folder_items_element button{margin-left:.5em}.library_style_container .help-button{float:right}.library_style_container .pagination-sm{height:15px}.library_style_container .library-paginator{margin-left:2em}.library_style_container .import-type-switch{text-decoration:underline}.library_style_container .libimport-select-none,.library_style_container .libimport-select-all{margin-left:.5em}.library_style_container .library-modal-item{width:90%;margin-left:1em;margin-right:1em}.library_style_container .paginator-bottom{width:27em;margin-left:auto;margin-right:auto;margin-top:2em;margin-bottom:2em}.modal-content #selected_history_content ul{list-style-type:none}#library-grid ul{list-style:none}#library-grid span.expandLink{padding-left:12px;display:inline-block;vertical-align:middle;background:url(../images/silk/resultset_next.png) no-repeat}#library-grid .folderRow.expanded span.expandLink{background:url(../images/silk/resultset_bottom.png) no-repeat}#library-grid .folderRow span.rowIcon{float:left;margin-right:5px;width:16px;height:16px;display:inline-block;vertical-align:middle;background:url(../images/silk/folder.png)}#library-grid .libraryItem-error{margin-right:2px;padding:0 2px 0 2px;border:1px solid #dd1b15;background:#f9c7c5}#library-grid .libraryItem-queued{margin-right:2px;padding:0 2px 0 2px;border:1px solid #bfbfbf;background:#eee}#library-grid .libraryItem-running{margin-right:2px;padding:0 2px 0 2px;border:1px solid #AAAA66;background:#FFFFCC}#library-grid .libraryItem-upload{margin-right:2px;padding:0 2px 0 2px;border:1px solid #119ac2;background:#a8e5f7}.libraryTitle th{text-align:left}.libraryTitle .rowTitle{padding:2px}
\ No newline at end of file
+a{text-decoration:underline}label{font-weight:normal}.library_style_container{width:95%;margin:auto;margin-top:2em;overflow:auto !important}.library_style_container .fa{font-size:12px}.library_style_container .fa-globe,.library_style_container .fa-shield,.library_style_container .fa-key,.library_style_container .fa-ban{font-size:initial;margin-left:.6em}.library_style_container .libraryRow{background-color:#ebd9b2}.library_style_container .datasetHighlighted{background-color:#f9f9f9}.library_style_container .libraryItemDeleted-True{font-style:italic}.library_style_container div.libraryItemBody{padding:4px 4px 2px 4px}.library_style_container li.folderRow,.library_style_container li.datasetRow{border-top:solid 1px #c6bfa8}.library_style_container li.folderRow:hover,.library_style_container li.datasetRow:hover{background-color:#f9f9f9}.library_style_container td.right-center{vertical-align:middle !important;text-align:right}.library_style_container .library-genome-select{max-width:350px}.library_style_container .library-extension-select{max-width:140px}.library_style_container .library_table td{border-top:1px solid #5f6990 !important}.library_style_container .library_table th{border-bottom:2px solid #5f6990 !important}.library_style_container .library_table a{color:#0A143D}.library_style_container .library_table a:hover{color:maroon}.library_style_container tr.light td{background-color:white;color:black}.library_style_container tr.light:hover td{background-color:#f5e8cc}.library_style_container tr.dark td{background-color:#d6b161;color:white}.library_style_container tr.dark:hover td{background-color:#ebd4a4;color:white}.library_style_container a.dark{color:white}.library_style_container .dataset_table tr,.library_style_container .dataset_table th,.library_style_container .dataset_table td{border:none}.library_style_container .dataset_table .dataset-first-column{width:30%}.library_style_container th.button_heading{width:2em}.library_style_container .bigdrop.select2-container .select2-results{max-height:300px}.library_style_container .bigdrop .select2-results{max-height:300px}.library_style_container .select2-container-multi{width:100%}.library_style_container .roles-selection{width:66%}.library_style_container #library_toolbar{margin-bottom:.5em}.library_style_container #library_toolbar span{margin-right:.2em}.library_style_container #library_toolbar .toolbar-item{margin-left:.5em}.library_style_container #libraries_element button,.library_style_container #folder_items_element button{margin-left:.5em}.library_style_container .right-float{float:right}.library_style_container .pagination-sm{height:15px}.library_style_container .library-paginator{margin-left:2em}.library_style_container .import-type-switch{text-decoration:underline}.library_style_container .libimport-select-none,.library_style_container .libimport-select-all{margin-left:.5em}.library_style_container .paginator-bottom{width:27em;margin-left:auto;margin-right:auto;margin-top:2em;margin-bottom:2em}.modal-content .library_selected_history_content ul{list-style-type:none}.modal-content .library-collection-type-select,.modal-content .library-collection-history-select{margin-left:auto;margin-right:auto;width:200px;min-width:200px}.modal-content .library-modal-item{width:90%;margin-left:auto;margin-right:auto;margin-top:1.5em}.libraryTitle th{text-align:left}.libraryTitle .rowTitle{padding:2px}
\ No newline at end of file
diff --git a/test/galaxy_selenium/navigates_galaxy.py b/test/galaxy_selenium/navigates_galaxy.py
index 1d20c179d9a..03727b15221 100644
--- a/test/galaxy_selenium/navigates_galaxy.py
+++ b/test/galaxy_selenium/navigates_galaxy.py
@@ -612,6 +612,11 @@ class NavigatesGalaxy(HasDriver):
         self.components.masthead.libraries.wait_for_and_click()
         self.components.libraries.selector.wait_for_visible()
 
+    def libraries_open_with_name(self, name):
+        self.libraries_open()
+        self.libraries_index_search_for(name)
+        self.libraries_index_table_elements()[0].find_element_by_css_selector("td a").click()
+
     @retry_during_transitions
     def libraries_index_table_elements(self):
         container = self.wait_for_selector_visible(".library_container")
@@ -657,8 +662,7 @@ class NavigatesGalaxy(HasDriver):
         self.driver.execute_script("$(arguments[0]).keyup();", search_box)
 
     def libraries_folder_create(self, name):
-        create_folder_button = self.wait_for_selector_clickable("#toolbtn_create_folder")
-        create_folder_button.click()
+        self.components.libraries.folder.add_folder.wait_for_and_click()
 
         name_text_box = self.wait_for_selector_clickable("input[name='Name']")
         name_text_box.send_keys(name)
@@ -681,6 +685,26 @@ class NavigatesGalaxy(HasDriver):
         self.wait_for_visible(self.navigation.libraries.folder.selectors.add_items_menu)
         self.wait_for_and_click(self.navigation.libraries.folder.labels.from_path)
 
+    def libraries_dataset_import_from_history_select(self, to_select_items):
+        self.wait_for_visible(self.navigation.libraries.folder.selectors.import_history_content)
+        history_elements = self.find_elements(self.navigation.libraries.folder.selectors.import_history_contents_items)
+        for to_select_item in to_select_items:
+            found = False
+            for history_element in history_elements:
+                if to_select_item in history_element.text:
+                    history_element.find_element_by_css_selector("input").click()
+                    found = True
+                    break
+
+            if not found:
+                raise Exception("Failed to find history item [%s] to select" % to_select_item)
+
+    def libraries_dataset_import_from_history_click_ok(self, wait=True):
+        self.wait_for_and_click(self.navigation.libraries.folder.selectors.import_datasets_ok_button)
+        if wait:
+            # Let the progress bar disappear...
+            self.wait_for_absent_or_hidden(self.navigation.libraries.folder.selectors.import_progress_bar)
+
     def libraries_table_elements(self):
         tbody_element = self.wait_for_selector_visible("#folder_list_body")
         return tbody_element.find_elements_by_css_selector("tr")[1:]
diff --git a/test/galaxy_selenium/navigation.yml b/test/galaxy_selenium/navigation.yml
index 8bad3a0f4de..7d7aa41a676 100644
--- a/test/galaxy_selenium/navigation.yml
+++ b/test/galaxy_selenium/navigation.yml
@@ -30,8 +30,8 @@ masthead:
     user:
       type: xpath
       selector: '//ul[@id="user"]'
-    
-    workflow: 
+
+    workflow:
       type: xpath
       selector: '//ul[@id="workflow"]'
 
@@ -123,7 +123,7 @@ history_panel:
     name: '.title .name'
     name_edit_input: '.name input'
     contents: '#current-history-panel .list-items div.history-content'
-    
+
     empty_message: '.empty-message'
     size: '.history-size'
     tag_icon: '.actions .history-tag-btn'
@@ -236,22 +236,25 @@ libraries:
 
   folder:
     selectors:
-      # There needs to a different class or ID on the dataset button, this isn't
-      # a good selector for that button since .add-library-items also applies to
-      # folder (but it is a button.add-library-items instead).
-      add_items_button: 'div.add-library-items'
-      add_items_menu: 'div.add-library-items .dropdown-menu'
-      add_items_options: 'div.add-library-items .dropdown-menu li a'
+      add_items_button: '.add-library-items-datasets'
+      add_items_menu: '.add-library-items-datasets .dropdown-menu'
+      add_items_options: '.add-library-items-datasets .dropdown-menu li a'
 
-      # TODO: Most of these are very good selectors but the same DOM elements
+      add_folder: '.add-library-items-folder'
+
+      add_to_history: '.add-to-history'
+      add_to_history_datasets: '.add-to-history-datasets'
+      add_to_history_collection: '.add-to-history-collection'
+      # TODO: Most of these aren't very good selectors but the same DOM elements
       # are reused without adding specific classes, IDs, or roles to anything.
       import_modal: '.modal'
       import_datasets_ok_button: '.modal-footer .buttons #button-0'
       import_datasets_cancel_button: '.modal-footer .buttons #button-1'
       import_progress_bar: '.progress-bar-import'
-      import_history_content: '#selected_history_content'
-      import_history_contents_items: '#selected_history_content ul li'
+      import_history_content: '.library_selected_history_content'
+      import_history_contents_items: '.library_selected_history_content ul li'
       import_from_path_textarea: '#import_paths'
+      select_all: '#select-all-checkboxes'
 
     labels:
       from_history: 'from History'
diff --git a/test/selenium_tests/test_library_contents.py b/test/selenium_tests/test_library_contents.py
index 570de3ca9a9..0481af9cc60 100644
--- a/test/selenium_tests/test_library_contents.py
+++ b/test/selenium_tests/test_library_contents.py
@@ -31,16 +31,11 @@ class LibraryContentsTestCase(SeleniumTestCase):
         self.wait_for_absent_or_hidden(self.navigation.libraries.folder.selectors.import_modal)
 
         self.libraries_dataset_import_from_history()
-        self.wait_for_visible(self.navigation.libraries.folder.selectors.import_history_content)
-        history_elements = self.find_elements(self.navigation.libraries.folder.selectors.import_history_contents_items)
-        assert "1.txt" in history_elements[0].text
-        history_elements[0].find_element_by_css_selector("input").click()
+        self.libraries_dataset_import_from_history_select(["1.txt"])
         # Add
         self.sleep_for(self.wait_types.UX_RENDER)
         self.screenshot("libraries_dataset_import")
-        self.wait_for_and_click(self.navigation.libraries.folder.selectors.import_datasets_ok_button)
-        # Let the progress bar disappear...
-        self.wait_for_absent_or_hidden(self.navigation.libraries.folder.selectors.import_progress_bar)
+        self.libraries_dataset_import_from_history_click_ok()
         self._assert_num_displayed_items_is(1)
 
     # Fine test locally but the upload doesn't work in Docker compose. I'd think
@@ -103,6 +98,4 @@ class LibraryContentsTestCase(SeleniumTestCase):
         self.libraries_open()
         self.name = self._get_random_name(prefix="testcontents")
         self.libraries_index_create(self.name)
-        self.wait_for_overlays_cleared()
-        self.libraries_index_search_for(self.name)
-        self.libraries_index_table_elements()[0].find_element_by_css_selector("td a").click()
+        self.libraries_open_with_name(self.name)
diff --git a/test/selenium_tests/test_library_to_collections.py b/test/selenium_tests/test_library_to_collections.py
new file mode 100644
index 00000000000..b2314f6db1f
--- /dev/null
+++ b/test/selenium_tests/test_library_to_collections.py
@@ -0,0 +1,46 @@
+from .framework import (
+    selenium_test,
+    SharedStateSeleniumTestCase,
+)
+
+
+class LibraryToCollectionsTestCase(SharedStateSeleniumTestCase):
+
+    requires_admin = True
+
+    @selenium_test
+    def test_list_creation(self):
+        self.admin_login()
+        self.history_panel_create_new_with_name("new_history_for_library_list")
+        self.libraries_open_with_name(self.name)
+        self.sleep_for(self.wait_types.UX_RENDER)
+        self.components.libraries.folder.select_all.wait_for_and_click()
+        self.components.libraries.folder.add_to_history.wait_for_and_click()
+        self.screenshot("libraries_add_to_history_menu")
+        self.components.libraries.folder.add_to_history_collection.wait_for_and_click()
+        self.sleep_for(self.wait_types.UX_RENDER)
+        self.screenshot("libraries_to_collection_landing")
+        self.components.libraries.folder.import_datasets_ok_button.wait_for_and_click()
+
+        self.collection_builder_set_name("my cool list")
+        self.collection_builder_create()
+        self.home()
+        self.history_panel_wait_for_hid_ok(3)
+
+    def setup_shared_state(self):
+        self.admin_login()
+        self.perform_upload(self.get_filename("1.bed"))
+        self.wait_for_history()
+        self.perform_upload(self.get_filename("2.bed"))
+        self.wait_for_history()
+
+        self.name = self._get_random_name(prefix="testcontents")
+
+        self.libraries_open()
+        self.libraries_index_create(self.name)
+        self.libraries_open_with_name(self.name)
+
+        self.libraries_dataset_import_from_history()
+        self.libraries_dataset_import_from_history_select(["1.bed", "2.bed"])
+        self.sleep_for(self.wait_types.UX_RENDER)
+        self.libraries_dataset_import_from_history_click_ok()