From 61e96b34c477c84991354c2bf53db16583a16880 Mon Sep 17 00:00:00 2001
From: Matthias Bernt <m.bernt@ufz.de>
Date: Tue, 1 Mar 2022 15:09:38 +0100
Subject: [PATCH 1/2] add phyloseq datatype

---
 lib/galaxy/config/sample/datatypes_conf.xml.sample | 1 +
 1 file changed, 1 insertion(+)

diff --git a/lib/galaxy/config/sample/datatypes_conf.xml.sample b/lib/galaxy/config/sample/datatypes_conf.xml.sample
index 992f41836e7..b2f8b586a95 100644
--- a/lib/galaxy/config/sample/datatypes_conf.xml.sample
+++ b/lib/galaxy/config/sample/datatypes_conf.xml.sample
@@ -641,6 +641,7 @@
     <datatype extension="gpr" type="galaxy.datatypes.microarrays:Gpr" display_in_upload="true"/>
     <datatype extension="gal" type="galaxy.datatypes.microarrays:Gal" display_in_upload="true"/>
     <datatype extension="rds" type="galaxy.datatypes.binary:RDS" display_in_upload="true" description="Serialized R object generated with saveRDS"/>
+    <datatype extension="phyloseq" type="galaxy.datatypes.binary:RDS" display_in_upload="true" description="Serialized phyloseq object"/>
     <datatype extension="rdata" type="galaxy.datatypes.binary:RData" mimetype="application/x-gzip" display_in_upload="true" description="Stored data from an R session genearted with save or save.img"/>
     <datatype extension="rdata.sce" type="galaxy.datatypes.binary:RData" mimetype="application/x-gzip" subclass="true" display_in_upload="true" description="Stored RData from a SingleCellObject"/>
     <datatype extension="rdata.xcms.raw" type="galaxy.datatypes.binary:RData" mimetype="application/x-gzip" subclass="true" display_in_upload="true"/>

From f164d6c70822aae0d80b503e1091952b83a8b89c Mon Sep 17 00:00:00 2001
From: M Bernt <m.bernt@ufz.de>
Date: Wed, 2 Mar 2022 17:27:11 +0100
Subject: [PATCH 2/2] do subclass

Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com>
---
 lib/galaxy/config/sample/datatypes_conf.xml.sample | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/lib/galaxy/config/sample/datatypes_conf.xml.sample b/lib/galaxy/config/sample/datatypes_conf.xml.sample
index b2f8b586a95..fc6d040467b 100644
--- a/lib/galaxy/config/sample/datatypes_conf.xml.sample
+++ b/lib/galaxy/config/sample/datatypes_conf.xml.sample
@@ -641,7 +641,7 @@
     <datatype extension="gpr" type="galaxy.datatypes.microarrays:Gpr" display_in_upload="true"/>
     <datatype extension="gal" type="galaxy.datatypes.microarrays:Gal" display_in_upload="true"/>
     <datatype extension="rds" type="galaxy.datatypes.binary:RDS" display_in_upload="true" description="Serialized R object generated with saveRDS"/>
-    <datatype extension="phyloseq" type="galaxy.datatypes.binary:RDS" display_in_upload="true" description="Serialized phyloseq object"/>
+    <datatype extension="phyloseq" type="galaxy.datatypes.binary:RDS" subclass="true" display_in_upload="true" description="Serialized phyloseq object"/>
     <datatype extension="rdata" type="galaxy.datatypes.binary:RData" mimetype="application/x-gzip" display_in_upload="true" description="Stored data from an R session genearted with save or save.img"/>
     <datatype extension="rdata.sce" type="galaxy.datatypes.binary:RData" mimetype="application/x-gzip" subclass="true" display_in_upload="true" description="Stored RData from a SingleCellObject"/>
     <datatype extension="rdata.xcms.raw" type="galaxy.datatypes.binary:RData" mimetype="application/x-gzip" subclass="true" display_in_upload="true"/>