From c49e7803fa1814abd04afb26b54965fb7af612ac Mon Sep 17 00:00:00 2001
From: Martin Cech <cech.marten@gmail.com>
Date: Wed, 13 Apr 2016 11:12:15 -0400
Subject: [PATCH 1/3] fix biomart url

---
 tools/data_source/biomart.xml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tools/data_source/biomart.xml b/tools/data_source/biomart.xml
index db56c299f1d..833a7e7b636 100644
--- a/tools/data_source/biomart.xml
+++ b/tools/data_source/biomart.xml
@@ -10,7 +10,7 @@
 <tool name="BioMart" id="biomart" tool_type="data_source" version="1.0.1">
 	<description>Central server</description>
 	<command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command>
-	<inputs action="http://www.biomart.org/biomart/martview" check_values="false" method="get" target="_top">
+	<inputs action="http://www.ensembl.org/biomart/martview" check_values="false" method="get" target="_top">
 		<display>go to BioMart Central $GALAXY_URL</display>
 		<param name="GALAXY_URL" type="baseurl" value="/tool_runner/biomart" />
     </inputs>

From 7bed69ba17b4ce633c621ee34a7544115eb95970 Mon Sep 17 00:00:00 2001
From: Dannon Baker <dannon.baker@gmail.com>
Date: Thu, 14 Apr 2016 16:56:47 -0400
Subject: [PATCH 2/3] Specify Ensembl biomart server in descriptions.

---
 tools/data_source/biomart.xml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/tools/data_source/biomart.xml b/tools/data_source/biomart.xml
index 833a7e7b636..989f3537d7e 100644
--- a/tools/data_source/biomart.xml
+++ b/tools/data_source/biomart.xml
@@ -8,10 +8,10 @@
     everything including and beyond the first '&' is truncated from URL.  They said they'll let us know when this is fixed at their end.
 -->
 <tool name="BioMart" id="biomart" tool_type="data_source" version="1.0.1">
-	<description>Central server</description>
+	<description>Ensembl server</description>
 	<command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command>
 	<inputs action="http://www.ensembl.org/biomart/martview" check_values="false" method="get" target="_top">
-		<display>go to BioMart Central $GALAXY_URL</display>
+		<display>go to BioMart (Ensembl) $GALAXY_URL</display>
 		<param name="GALAXY_URL" type="baseurl" value="/tool_runner/biomart" />
     </inputs>
     <request_param_translation>

From 1e7edf0bd7a003e0abc63c4f0a17fdfac535ade3 Mon Sep 17 00:00:00 2001
From: Dannon Baker <dannon.baker@gmail.com>
Date: Thu, 14 Apr 2016 16:59:25 -0400
Subject: [PATCH 3/3] no parens

---
 tools/data_source/biomart.xml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tools/data_source/biomart.xml b/tools/data_source/biomart.xml
index 989f3537d7e..bf4c4c13bd1 100644
--- a/tools/data_source/biomart.xml
+++ b/tools/data_source/biomart.xml
@@ -11,7 +11,7 @@
 	<description>Ensembl server</description>
 	<command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command>
 	<inputs action="http://www.ensembl.org/biomart/martview" check_values="false" method="get" target="_top">
-		<display>go to BioMart (Ensembl) $GALAXY_URL</display>
+		<display>go to BioMart Ensembl $GALAXY_URL</display>
 		<param name="GALAXY_URL" type="baseurl" value="/tool_runner/biomart" />
     </inputs>
     <request_param_translation>