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@@ -3,7 +3,7 @@ Conda for Tool Dependencies
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=================================
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Galaxy tools (also called wrappers) traditionally use Tool Shed package
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recipes to install their dependencies. At the tool’s installation time
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recipes to install their dependencies. At the tool's installation time
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the recipe is downloaded and executed in order to provide the underlying
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software executables. Introduction of these Galaxy-specific recipes was
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a necessary step at the time, however nowadays there are other more
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@@ -19,7 +19,7 @@ stable, they are also easier to test and faster to develop than the
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traditional Tool Shed package recipes.
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Conda is a package manager like apt-get, yum, pip, brew or guix. We
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don’t want to argue about the relative merits of various package
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don't want to argue about the relative merits of various package
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managers here, in fact Galaxy supports multiple package managers and we
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welcome community contributions (such as implementing a Guix package
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manager or enhancing the existing brew support to bring it on par with
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@@ -51,7 +51,7 @@ installations ?
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Most Galaxy administrators have not set up a dependency resolvers
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configuration file ( ``dependency_resolvers_conf.xml`` ) which means they
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are using Galaxy’s default ( dependency\_resolvers\_conf.xml.sample ).
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are using Galaxy's default ( dependency\_resolvers\_conf.xml.sample ).
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Galaxy has enabled Conda dependency resolution by default since release
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16.04 (if Conda was installed already), so many existing installations
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can use Conda dependencies. Having Conda enabled in ``dependency_resolvers_conf.xml`` means that Galaxy will
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@@ -235,7 +235,7 @@ touch with the awesome BioConda community. They have great documentation
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and assist with all development. You will also see a few of us at this
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project to get you started :)
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Don’t be scared! Conda recipes are really simple to write. Conda also
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Don't be scared! Conda recipes are really simple to write. Conda also
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offers you, so called \`skeleton\` generators, generating recipes from
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pypi, cran, cpan for you (mostly) automatically.
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@@ -297,7 +297,7 @@ The order in which resolvers are tried is listed in the
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The first system that satisfies a requirement will be used.
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13. What can I do if Conda doesn’t work for me?
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13. What can I do if Conda doesn't work for me?
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There is currently a limitation in the way conda packages are being
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built. This limitation will be addressed shortly by the Conda community,
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