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Add test tool for default ext handling in discovered collections

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This commit is contained in:
mvdbeek
2024-06-13 12:53:28 +02:00
parent d295669502
commit dd171fe34d
2 changed files with 53 additions and 0 deletions
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test/functional/tools/discover_default_ext.xml
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@@ -0,0 +1,52 @@
<tool id="discover_default_ext" name="discover_default_ext" version="0.1.0">
<command><![CDATA[
echo 1 > 1.txt;
]]></command>
<inputs />
<outputs>
<collection name="collection_with_default_ext" type="list" label="with default format" format="fasta">
<discover_datasets pattern="__name_and_ext__" />
</collection>
<collection name="collection_default_ext_and_explicit_format" type="list" label="with default format and static element format" format="fasta">
<discover_datasets pattern="__name__" format="txt" />
</collection>
<collection name="collection_default_ext_used" type="list" label="with default format and no override" format="fasta">
<discover_datasets pattern="__name__" />
</collection>
<collection name="collection_without_default_ext" type="list" label="wihtout default ext, should be data">
<discover_datasets pattern="__name__" />
</collection>
</outputs>
<tests>
<test expect_num_outputs="4">
<output_collection name="collection_with_default_ext" type="list" count="1">
<element name="1" ftype="txt">
<assert_contents>
<has_text text="1" />
</assert_contents>
</element>
</output_collection>
<output_collection name="collection_default_ext_and_explicit_format" type="list" count="1">
<element name="1.txt" ftype="txt">
<assert_contents>
<has_text text="1" />
</assert_contents>
</element>
</output_collection>
<output_collection name="collection_default_ext_used" type="list" count="1">
<element name="1.txt" ftype="fasta">
<assert_contents>
<has_text text="1" />
</assert_contents>
</element>
</output_collection>
<output_collection name="collection_without_default_ext" type="list" count="1">
<element name="1.txt" ftype="data">
<assert_contents>
<has_text text="1" />
</assert_contents>
</element>
</output_collection>
</test>
</tests>
</tool>
test/functional/tools/sample_tool_conf.xml
+1
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@@ -206,6 +206,7 @@
<tool file="collection_cat_group_tag.xml" />
<tool file="collection_cat_group_tag_multiple.xml" />
<tool file="discover_sort_by.xml" />
<tool file="discover_default_ext.xml" />
<tool file="expression_forty_two.xml" />
<tool file="expression_pick_larger_file.xml" />
<tool file="expression_parse_int.xml" />