From f3d73f37a2bdb8ed4a46c064243c35658f27a43b Mon Sep 17 00:00:00 2001 From: Pablo Moreno Date: Tue, 14 Jun 2016 17:14:57 +0300 Subject: [PATCH] Removes incorrect FALSE option for include_work_dir which makes certain jobs that discover files from working directories to fail recovering files when running through Kubernetes. --- lib/galaxy/jobs/runners/kubernetes.py | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/lib/galaxy/jobs/runners/kubernetes.py b/lib/galaxy/jobs/runners/kubernetes.py index 3829ed8da7f..d617d230e48 100644 --- a/lib/galaxy/jobs/runners/kubernetes.py +++ b/lib/galaxy/jobs/runners/kubernetes.py @@ -65,8 +65,7 @@ class KubernetesJobRunner(AsynchronousJobRunner): # We currently don't need to include_metadata or include_work_dir_outputs, as working directory is the same # were galaxy will expect results. log.debug("Starting queue_job for job " + job_wrapper.get_id_tag()) - if not self.prepare_job(job_wrapper, include_metadata=False, include_work_dir_outputs=False, - modify_command_for_container=False): + if not self.prepare_job(job_wrapper, include_metadata=False, modify_command_for_container=False): return job_destination = job_wrapper.job_destination