From dca783b185d249beb80ebfccb68630f6beabb071 Mon Sep 17 00:00:00 2001
From: mvdbeek <m.vandenbeek@gmail.com>
Date: Wed, 24 May 2023 10:47:49 +0200
Subject: [PATCH] Add test tool for triggering implicit bigwig to wig converter

---
 .../implicit_conversion_optional_param.xml    | 23 +++++++++++++++++++
 test/functional/tools/sample_tool_conf.xml    |  1 +
 2 files changed, 24 insertions(+)
 create mode 100644 test/functional/tools/implicit_conversion_optional_param.xml

diff --git a/test/functional/tools/implicit_conversion_optional_param.xml b/test/functional/tools/implicit_conversion_optional_param.xml
new file mode 100644
index 00000000000..81944128b25
--- /dev/null
+++ b/test/functional/tools/implicit_conversion_optional_param.xml
@@ -0,0 +1,23 @@
+<tool id="implicit_conversion_optional_param" name="Test Implicit Conversion" version="0.1" profile="22.01">
+    <!-- test that optional parameter in bigwig to wig converter can be left unset -->
+    <command><![CDATA[cp '$input' '$output']]></command>
+    <inputs>
+        <param name="input" type="data" format="wig" label="Biom1 file" />
+    </inputs>
+    <outputs>
+        <data name="output" format="wig" />
+    </outputs>
+    <tests>
+        <!-- bigwig file for wig input triggers bigwig to wig conversion -->
+        <test>
+            <param name="input" ftype="bigwig" value="2.bigwig" />
+            <output name="output" ftype="wig">
+                <assert_contents>
+                    <has_text text="variableStep chrom" />
+                </assert_contents>
+            </output>
+        </test>
+    </tests>
+    <help>
+    </help>
+</tool>
\ No newline at end of file
diff --git a/test/functional/tools/sample_tool_conf.xml b/test/functional/tools/sample_tool_conf.xml
index fe3cfb0294c..5c68594e815 100644
--- a/test/functional/tools/sample_tool_conf.xml
+++ b/test/functional/tools/sample_tool_conf.xml
@@ -153,6 +153,7 @@
   <tool file="validation_empty_dataset.xml" />
   <tool file="implicit_conversion.xml" />
   <tool file="implicit_conversion_format_input.xml" />
+  <tool file="implicit_conversion_optional_param.xml" />
   <tool file="implicit_collection_conversion.xml" />
   <tool file="implicit_nested_list_conversion.xml" />
   <tool file="explicit_conversion.xml" />