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https://github.com/galaxyproject/galaxy.git
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Convert everything from elementtree to stdlib xml module.
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@@ -8,12 +8,7 @@ build description
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import sys
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import urllib
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if sys.version_info[:2] >= ( 2, 5 ):
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import xml.etree.ElementTree as ElementTree
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else:
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from galaxy import eggs
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import pkg_resources; pkg_resources.require( "elementtree" )
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from elementtree import ElementTree
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import xml.etree.ElementTree as ElementTree
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URL = "http://genome.cse.ucsc.edu/cgi-bin/das/dsn"
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@@ -38,7 +33,7 @@ def getbuilds(url):
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for dsn in tree:
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build = dsn.find("SOURCE").attrib['id']
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description = dsn.find("DESCRIPTION").text.replace(" - Genome at UCSC","").replace(" Genome at UCSC","")
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fields = description.split(" ")
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temp = fields[0]
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for i in range(len(fields)-1):
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@@ -5,12 +5,7 @@ Connects to sites and determines which builds are available at each.
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import sys
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import urllib
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if sys.version_info[:2] >= ( 2, 5 ):
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import xml.etree.ElementTree as ElementTree
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else:
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from galaxy import eggs
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import pkg_resources; pkg_resources.require( "elementtree" )
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from elementtree import ElementTree
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import xml.etree.ElementTree as ElementTree
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sites = ['http://genome.ucsc.edu/cgi-bin/',
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'http://archaea.ucsc.edu/cgi-bin/',
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@@ -38,7 +33,7 @@ def main():
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print "#Invalid xml passed back from " + site
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continue
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print "#Harvested from",site
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for dsn in tree:
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build = dsn.find("SOURCE").attrib['id']
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builds.append(build)
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