diff --git a/tools/picard/picard_wrapper.py b/tools/picard/picard_wrapper.py index a911da7a92a..9ce4b855131 100644 --- a/tools/picard/picard_wrapper.py +++ b/tools/picard/picard_wrapper.py @@ -22,7 +22,7 @@ galhtmlprefix = """
""" -galhtmlattr = """Galaxy tool wrapper run %s at %s
""" +galhtmlattr = """Galaxy tool wrapper %s at %s
""" galhtmlpostfix = """
\n""" @@ -68,7 +68,7 @@ class PicardBase(): os.makedirs(opts.tmpdir) except: pass - self.log_filename = '%s.log' % self.picname + self.log_filename = os.path.join(opts.outdir,'%s.log' % self.picname) self.metricsOut = os.path.join(opts.outdir,'%s.metrics.txt' % self.picname) def baseName(self,name=None): @@ -237,7 +237,7 @@ class PicardBase(): tr.d1 td {background-color: aliceblue; color: black;} """ res = [rstyle,] - res.append(galhtmlprefix % self.progname) + res.append(galhtmlprefix % self.picname) res.append(galhtmlattr % (self.progname,timenow())) flist = [x for x in os.listdir(self.opts.outdir) if not x.startswith('.')] pdflist = [x for x in flist if os.path.splitext(x)[-1].lower() == '.pdf']