diff --git a/.github/workflows/jest.yaml b/.github/workflows/jest.yaml index 0bbe2978043..634c87272e2 100644 --- a/.github/workflows/jest.yaml +++ b/.github/workflows/jest.yaml @@ -31,7 +31,5 @@ jobs: run: yarn run gulp client working-directory: client - name: Run Unit Tests - run: yarn run qunit - working-directory: client - run: yarn jest working-directory: client diff --git a/client/.eslintrc.json b/client/.eslintrc.json index a02efdbb365..b05eefa6c72 100644 --- a/client/.eslintrc.json +++ b/client/.eslintrc.json @@ -59,7 +59,7 @@ "vuejs-accessibility/no-autofocus": "error", "vuejs-accessibility/tabindex-no-positive": "error" }, - "ignorePatterns": ["dist", "src/qunit", "src/mocha", "src/libs", "src/nls", "src/legacy"], + "ignorePatterns": ["dist", "src/libs", "src/nls", "src/legacy"], "overrides": [ { "files": ["**/*.vue"], diff --git a/client/README.md b/client/README.md index 4eff98fefb4..667eb23b05e 100644 --- a/client/README.md +++ b/client/README.md @@ -122,10 +122,6 @@ utils](https://vue-test-utils.vuejs.org/) to mount individual components in a test bed and check them for rendered features. Please use jest-based mocking for isolating test functionality. -A set of older qUnit tests also exist which will be phased-out as the code they -support is replaced with modern component-based implementations. In the -meantime, we still run the qunit tests in sequence. - ### Running the tests #### At Build-Time @@ -145,15 +141,7 @@ commands. This is what CI is going to run, and also what 'make client-test' invokes, executing all the client tests: - yarn run test - -You can also bypass qunit and single-run all of the jest tests like so: - - yarn run jest - -Or, if you want to run just the qunit tests: - - yarn run qunit + yarn test ##### Watch and rerun jest unit tests every time a source file changes diff --git a/client/package.json b/client/package.json index 9c40106e496..3197b653dfe 100644 --- a/client/package.json +++ b/client/package.json @@ -128,10 +128,9 @@ "format": "prettier --write . --cache", "format-check": "prettier --check .", "prettier": "yarn run format", - "test": "yarn run qunit && yarn run jest", + "test": "yarn run jest", "jest": "jest --config tests/jest/jest.config.js", "jest-watch": "jest --config tests/jest/jest.config.js --watch", - "qunit": "karma start tests/karma/karma.config.qunit.js", "eslint-precommit": "eslint -c .eslintrc.json --quiet --ext .js,.vue,.ts src tests/jest/standalone", "eslint": "eslint -c .eslintrc.json --ext .js,.vue,.ts src tests/jest/standalone" }, @@ -170,16 +169,10 @@ "jest-environment-jsdom": "^29.3.1", "jest-location-mock": "^1.0.9", "json-loader": "^0.5.7", - "karma": "^6.3.16", - "karma-chrome-launcher": "^3.1.0", - "karma-polyfill": "^1.1.0", - "karma-qunit": "^4.1.2", - "karma-webpack": "^5.0.0", "mini-css-extract-plugin": "^2.5.3", "postcss-loader": "^7.0.2", "prettier": "^2.8.3", "process": "^0.11.10", - "qunit": "^2.17.2", "raw-loader": "^4.0.2", "sass": "^1.58.0", "sass-loader": "^13.2.0", diff --git a/client/src/app/app.test.js b/client/src/app/app.test.js new file mode 100644 index 00000000000..71fc91e4a3b --- /dev/null +++ b/client/src/app/app.test.js @@ -0,0 +1,69 @@ +import { getGalaxyInstance, setGalaxyInstance } from "app"; +import Backbone from "backbone"; +import galaxyOptions from "@tests/test-data/bootstrapped"; + +export function setupTestGalaxy(galaxyOptions_ = null) { + galaxyOptions_ = galaxyOptions_ || galaxyOptions; + setGalaxyInstance((GalaxyApp) => { + const galaxy = new GalaxyApp(galaxyOptions_); + galaxy.currHistoryPanel = { + model: new Backbone.Model(), + }; + return galaxy; + }); +} + +describe("App base construction/initializiation defaults", () => { + beforeEach(() => { + setupTestGalaxy(galaxyOptions); + }); + + test("App base construction/initializiation defaults", function () { + const app = getGalaxyInstance(); + expect(app.options && typeof app.options === "object").toBeTruthy(); + expect(app.config && typeof app.config === "object").toBeTruthy(); + expect(app.user && typeof app.config === "object").toBeTruthy(); + expect(app.localize).toBe(window._l); + }); + + test("App base default options", function () { + const app = getGalaxyInstance(); + expect(app.options !== undefined && typeof app.options === "object").toBeTruthy(); + expect(app.options.root).toBe("/"); + expect(app.options.patchExisting).toBe(true); + }); + + test("App base extends from Backbone.Events", function () { + const app = getGalaxyInstance(); + ["on", "off", "trigger", "listenTo", "stopListening"].forEach(function (fn) { + expect(Object.prototype.hasOwnProperty.call(app, fn) && typeof app[fn] === "function").toBeTruthy(); + }); + }); + + // // We no longer want this behavior, but leaving the test to express that + test("App base will patch in attributes from existing Galaxy objects", function () { + const existingApp = getGalaxyInstance(); + existingApp.foo = 123; + + const newApp = setGalaxyInstance((GalaxyApp) => { + return new GalaxyApp(); + }); + + expect(newApp.foo === 123).toBeTruthy(); + }); + + test("App base config", function () { + const app = getGalaxyInstance(); + expect(app.config && typeof app.config === "object").toBeTruthy(); + expect(app.config.allow_user_deletion).toBe(false); + expect(app.config.allow_user_creation).toBe(true); + expect(app.config.wiki_url).toBe("https://galaxyproject.org/"); + expect(app.config.ftp_upload_site).toBe(null); + }); + + test("App base user", function () { + const app = getGalaxyInstance(); + expect(app.user !== undefined && typeof app.user === "object").toBeTruthy(); + expect(app.user.isAdmin() === false).toBeTruthy(); + }); +}); diff --git a/client/src/app/base-mvc.js b/client/src/app/base-mvc.js index 961a02ff590..c547942779e 100644 --- a/client/src/app/base-mvc.js +++ b/client/src/app/base-mvc.js @@ -1,42 +1,8 @@ import $ from "jquery"; import _ from "underscore"; import Backbone from "backbone"; -import addLogging from "utils/add-logging"; import _l from "utils/localization"; -//============================================================================== -/** @class Mixin to add logging capabilities to an object. - * Designed to allow switching an objects log output off/on at one central - * statement. Can be used with plain browser console (or something more - * complex like an AJAX logger). - *
NOTE: currently only uses the console.debug log function - * (as opposed to debug, error, warn, etc.) - * @name LoggableMixin - * - * @example - * // Add to your models/views at the definition using chaining: - * var MyModel = Backbone.Model.extend( LoggableMixin ).extend({ // ... }); - * - * // or - more explicitly AFTER the definition: - * var MyModel = Backbone.Model.extend({ - * logger : console - * // ... - * this.log( '$#%& it! - broken already...' ); - * }) - * _.extend( MyModel.prototype, LoggableMixin ) - * - */ -var LoggableMixin = /** @lends LoggableMixin# */ { - // replace null with console (if available) to see all logs for a particular view/model - /** The logging object whose log function will be used to output - * messages. Null will supress all logging. Commonly set to console. - */ - logger: null, - /** @type {String} a namespace for filtering/focusing log output */ - _logNamespace: ".", -}; -addLogging(LoggableMixin); - //============================================================================== /** Backbone model that syncs to the browser's sessionStorage API. * This all largely happens behind the scenes and no special calls are required. @@ -196,7 +162,7 @@ var SearchableModelMixin = { /** search the attribute with key attrKey for the string searchFor; T/F if found */ searchAttribute: function (attrKey, searchFor) { var attrVal = this.get(attrKey); - //this.debug( 'searchAttribute', attrKey, attrVal, searchFor ); + //console.debug( 'searchAttribute', attrKey, attrVal, searchFor ); // bail if empty searchFor or unsearchable values if (!searchFor || attrVal === undefined || attrVal === null) { return false; @@ -210,7 +176,7 @@ var SearchableModelMixin = { /** deep(er) search for array attributes; T/F if found */ _searchArrayAttribute: function (array, searchFor) { - //this.debug( '_searchArrayAttribute', array, searchFor ); + //console.debug( '_searchArrayAttribute', array, searchFor ); searchFor = searchFor.toLowerCase(); //precondition: searchFor has already been validated as non-empty string //precondition: assumes only 1 level array @@ -575,7 +541,6 @@ function buildComparator(attribute_name, options) { //============================================================================== export default { - LoggableMixin: LoggableMixin, SessionStorageModel: SessionStorageModel, mixin: mixin, SearchableModelMixin: SearchableModelMixin, diff --git a/client/src/app/galaxy.js b/client/src/app/galaxy.js index 0b506a86abf..e84180f6de5 100644 --- a/client/src/app/galaxy.js +++ b/client/src/app/galaxy.js @@ -1,10 +1,7 @@ import $ from "jquery"; import _ from "underscore"; import Backbone from "backbone"; -import BASE_MVC from "./base-mvc"; import userModel from "./user-model"; -import metricsLogger from "utils/metrics-logger"; -import addLogging from "utils/add-logging"; import { localize, _setUserLocale, _getUserLocale } from "utils/localization"; import { getGalaxyInstance } from "app"; import { create, dialog } from "utils/data"; @@ -12,7 +9,6 @@ import { create, dialog } from "utils/data"; // ============================================================================ /** Base galaxy client-side application. * Iniitializes: - * logger : the logger/metrics-logger * localize : the string localizer * config : the current configuration (any k/v in * galaxy.ini available from the configuration API) @@ -22,29 +18,9 @@ export function GalaxyApp(options = {}, bootstrapped = {}) { this._init(options, bootstrapped); } -// add logging shortcuts for this object -addLogging(GalaxyApp, "GalaxyApp"); - -// a debug flag can be set via local storage and made available during script/page loading -const DEBUGGING_KEY = "galaxy:debug"; - -const NAMESPACE_KEY = `${DEBUGGING_KEY}:namespaces`; -const FLATTEN_LOG_MESSAGES_KEY = `${DEBUGGING_KEY}:flatten`; - -let localDebugging = false; -try { - localDebugging = localStorage.getItem(DEBUGGING_KEY) == "true"; -} catch (storageErr) { - console.log(localize("localStorage not available for debug flag retrieval")); -} - /** initalize options and sub-components */ GalaxyApp.prototype._init = function (options, bootstrapped) { _.extend(this, Backbone.Events); - if (localDebugging) { - this.logger = console; - console.debug("debugging galaxy:", "options:", options, "bootstrapped:", bootstrapped); - } this._processOptions(options); this._initConfig(options.config || {}); @@ -62,24 +38,15 @@ GalaxyApp.prototype._init = function (options, bootstrapped) { this.params = options.params || {}; this.session_csrf_token = options.session_csrf_token || null; - this._initLogger(this.options.loggerOptions || {}); - // at this point, either logging or not and namespaces are enabled - chat it up - this.debug("GalaxyApp.options: ", this.options); - this.debug("GalaxyApp.config: ", this.config); - this.debug("GalaxyApp.logger: ", this.logger); - this._initLocale(); - this.debug("GalaxyApp.localize: ", this.localize); this.config = options.config || {}; - this.debug("GalaxyApp.config: ", this.config); this._initUser(options.user || {}); - this.debug("GalaxyApp.user: ", this.user); _setUserLocale(this.user, this.config); _getUserLocale(); - this.debug("currentLocale: ", sessionStorage.getItem("currentLocale")); + console.debug("currentLocale: ", sessionStorage.getItem("currentLocale")); this._setUpListeners(); this.trigger("ready", this); @@ -119,9 +86,6 @@ GalaxyApp.prototype._processOptions = function _processOptions(options) { GalaxyApp.prototype._initConfig = function _initConfig(config) { this.config = config; - // give precendence to localdebugging for this setting - this.config.debug = localDebugging || this.config.debug; - return this; }; @@ -129,56 +93,20 @@ GalaxyApp.prototype._initConfig = function _initConfig(config) { GalaxyApp.prototype._patchGalaxy = function _patchGalaxy(patchWith) { // in case req or plain script tag order has created a prev. version of the Galaxy obj... if (this.options.patchExisting && patchWith) { - // this.debug( 'found existing Galaxy object:', patchWith ); + // console.debug( 'found existing Galaxy object:', patchWith ); // ...(for now) monkey patch any added attributes that the previous Galaxy may have had //TODO: move those attributes to more formal assignment in GalaxyApp for (const k in patchWith) { if (Object.prototype.hasOwnProperty.call(patchWith, k)) { - // this.debug( '\t patching in ' + k + ' to Galaxy:', this[ k ] ); + // console.debug( '\t patching in ' + k + ' to Galaxy:', this[ k ] ); this[k] = patchWith[k]; } } } }; -/** set up the metrics logger (utils/metrics-logger) and pass loggerOptions */ -GalaxyApp.prototype._initLogger = function _initLogger(loggerOptions) { - // default to console logging at the debug level if the debug flag is set - if (this.config.debug) { - loggerOptions.consoleLogger = loggerOptions.consoleLogger || console; - loggerOptions.consoleLevel = loggerOptions.consoleLevel || metricsLogger.MetricsLogger.ALL; - // load any logging namespaces from localStorage if we can - try { - loggerOptions.consoleNamespaceWhitelist = localStorage.getItem(NAMESPACE_KEY).split(","); - } catch (storageErr) { - console.debug(storageErr); - } - try { - loggerOptions.consoleFlattenMessages = localStorage.getItem(FLATTEN_LOG_MESSAGES_KEY) == "true"; - } catch (storageErr) { - console.debug(storageErr); - } - console.log(loggerOptions.consoleFlattenMessages); - } - - this.logger = new metricsLogger.MetricsLogger(loggerOptions); - this.emit = {}; - ["log", "debug", "info", "warn", "error", "metric"].map((i) => { - this.emit[i] = (data) => { - this.logger.emit(i, arguments[0], Array.prototype.slice.call(arguments, 1)); - }; - }); - - if (this.config.debug) { - // add this logger to mvc's loggable mixin so that all models can use the logger - BASE_MVC.LoggableMixin.logger = this.logger; - } - return this; -}; - /** add the localize fn to this object and the window namespace (as '_l') */ -GalaxyApp.prototype._initLocale = function _initLocale(options) { - this.debug("_initLocale:", options); +GalaxyApp.prototype._initLocale = function _initLocale() { this.localize = localize; // add to window as global shortened alias // TODO: temporary - remove when can require for plugins @@ -220,9 +148,8 @@ GalaxyApp.prototype._initUserLocale = function _initUserLocale(options) { /** set up the current user as a Backbone model (mvc/user/user-model) */ GalaxyApp.prototype._initUser = function _initUser(userJSON) { - this.debug("_initUser:", userJSON); + console.debug("_initUser:", userJSON); this.user = new userModel.User(userJSON); - this.user.logger = this.logger; return this; }; @@ -248,52 +175,6 @@ GalaxyApp.prototype._setUpListeners = function _setUpListeners() { return this; }; -/** Turn debugging/console-output on/off by passing boolean. Pass nothing to get current setting. */ -GalaxyApp.prototype.debugging = function _debugging(setting) { - try { - if (setting === undefined) { - return localStorage.getItem(DEBUGGING_KEY) === "true"; - } - if (setting) { - localStorage.setItem(DEBUGGING_KEY, true); - return true; - } - - localStorage.removeItem(DEBUGGING_KEY); - // also remove all namespaces - this.debuggingNamespaces(null); - } catch (storageErr) { - console.log(localize("localStorage not available for debug flag retrieval")); - } - return false; -}; - -/** Add, remove, or clear namespaces from the debugging filters - * Pass no arguments to retrieve the existing namespaces as an array. - * Pass in null to clear all namespaces (all logging messages will show now). - * Pass in an array of strings or single string of the namespaces to filter to. - * Returns the new/current namespaces as an array; - */ -GalaxyApp.prototype.debuggingNamespaces = function _debuggingNamespaces(namespaces) { - try { - if (namespaces === undefined) { - const csv = localStorage.getItem(NAMESPACE_KEY); - return typeof csv === "string" ? csv.split(",") : []; - } else if (namespaces === null) { - localStorage.removeItem(NAMESPACE_KEY); - } else { - localStorage.setItem(NAMESPACE_KEY, namespaces); - } - const newSettings = this.debuggingNamespaces(); - if (this.logger) { - this.logger.options.consoleNamespaceWhitelist = newSettings; - } - return newSettings; - } catch (storageErr) { - console.log(localize("localStorage not available for debug namespace retrieval")); - } -}; - /** string rep */ GalaxyApp.prototype.toString = function toString() { const userEmail = this.user ? this.user.get("email") || "(anonymous)" : "uninitialized"; diff --git a/client/src/app/singleton.js b/client/src/app/singleton.js index 2fcb87470b7..fb9f147c428 100644 --- a/client/src/app/singleton.js +++ b/client/src/app/singleton.js @@ -2,7 +2,6 @@ * TODO: Make this part of galaxy.js later, once the global refs are gone */ -import addLogging from "utils/add-logging"; import config from "config"; import { GalaxyApp } from "./galaxy"; import { serverPath } from "utils/serverPath"; @@ -17,9 +16,6 @@ export function setGalaxyInstance(factory) { if (!(newInstance instanceof GalaxyApp)) { newInstance = new GalaxyApp(newInstance); } - if (newInstance.debug === undefined) { - addLogging(newInstance, "GalaxyApp"); - } storage._galaxyInstance = newInstance; diff --git a/client/src/app/user-model.js b/client/src/app/user-model.js index b382f24d841..f4d6de32684 100644 --- a/client/src/app/user-model.js +++ b/client/src/app/user-model.js @@ -1,17 +1,13 @@ import Backbone from "backbone"; import { getAppRoot } from "onload/loadConfig"; -import baseMVC from "./base-mvc"; import _l from "utils/localization"; -var logNamespace = "user"; //============================================================================== /** @class Model for a Galaxy user (including anonymous users). * @name User */ -var User = Backbone.Model.extend(baseMVC.LoggableMixin).extend( +var User = Backbone.Model.extend( /** @lends User.prototype */ { - _logNamespace: logNamespace, - /** API location for this resource */ urlRoot: function () { return `${getAppRoot()}api/users`; @@ -36,13 +32,11 @@ var User = Backbone.Model.extend(baseMVC.LoggableMixin).extend( * @param {Object} data Initial model data. */ initialize: function (data) { - this.log("User.initialize:", data); - this.on("loaded", function (model, resp) { - this.log(`${this} has loaded:`, model, resp); + console.log(`${this} has loaded:`, model, resp); }); this.on("change", function (model, data) { - this.log(`${this} has changed:`, model, data.changes); + console.log(`${this} has changed:`, model, data.changes); }); }, @@ -142,15 +136,6 @@ User.getCurrentUserFromApi = (options) => { return currentUser; }; -// (stub) collection for users (shouldn't be common unless admin UI) -//var UserCollection = Backbone.Collection.extend(baseMVC.LoggableMixin).extend({ -// model: User, -// urlRoot: function() { -// return `${getAppRoot()}api/users`; -// } -// //logger : console, -//}); - //============================================================================== export default { User: User, diff --git a/client/src/components/Collections/PairedListCollectionCreator.test.js b/client/src/components/Collections/PairedListCollectionCreator.test.js index 393dd33884f..ad545196207 100644 --- a/client/src/components/Collections/PairedListCollectionCreator.test.js +++ b/client/src/components/Collections/PairedListCollectionCreator.test.js @@ -1,7 +1,7 @@ import { mount } from "@vue/test-utils"; import { shallowMount } from "@vue/test-utils"; import PairedListCollectionCreator from "components/Collections/PairedListCollectionCreator"; -import DATA from "../../../tests/qunit/test-data/paired-collection-creator.data.js"; +import DATA from "@tests/test-data/paired-collection-creator.data.js"; describe("PairedListCollectionCreator", () => { let wrapper; diff --git a/client/src/components/Collections/PairedListCollectionCreator.vue b/client/src/components/Collections/PairedListCollectionCreator.vue index a2160206986..9282e15168a 100644 --- a/client/src/components/Collections/PairedListCollectionCreator.vue +++ b/client/src/components/Collections/PairedListCollectionCreator.vue @@ -669,7 +669,7 @@ export default { }, /** sort initial list */ _sortInitialList: function () { - //this.debug( '-- _sortInitialList' ); + //console.debug( '-- _sortInitialList' ); this._sortDatasetList(this.workingElements); }, @@ -813,7 +813,7 @@ export default { } // uncomment to see printlns while running tests - //this.debug = function(){ console.log.apply( console, arguments ); }; + //console.debug = function(){ console.log.apply( console, arguments ); }; // then try the remainder with something less strict strategy = strategy || this.strategy; @@ -909,7 +909,7 @@ export default { }; return function _strategy(params) { - // this.debug("autopair _strategy ---------------------------"); + // console.debug("autopair _strategy ---------------------------"); params = params || {}; var listA = params.listA; var listB = params.listB; @@ -923,8 +923,8 @@ export default { var paired = []; //console.debug( 'params:', JSON.stringify( params, null, ' ' ) ); - // this.debug("starting list lens:", listA.length, listB.length); - // this.debug("bestMatch (starting):", JSON.stringify(bestMatch, null, " ")); + // console.debug("starting list lens:", listA.length, listB.length); + // console.debug("bestMatch (starting):", JSON.stringify(bestMatch, null, " ")); while (indexA < listA.length) { var matchTo = listA[indexA]; @@ -932,8 +932,8 @@ export default { for (indexB = 0; indexB < listB.length; indexB++) { var possible = listB[indexB]; - // this.debug(`${indexA}:${matchTo.name}`); - // this.debug(`${indexB}:${possible.name}`); + // console.debug(`${indexA}:${matchTo.name}`); + // console.debug(`${indexB}:${possible.name}`); // no matching with self if (listA[indexA] !== listB[indexB]) { @@ -946,16 +946,16 @@ export default { bestMatch: bestMatch, }) ); - // this.debug("bestMatch:", JSON.stringify(bestMatch, null, " ")); + // console.debug("bestMatch:", JSON.stringify(bestMatch, null, " ")); if (bestMatch.score === 1.0) { - // this.debug("breaking early due to perfect match"); + // console.debug("breaking early due to perfect match"); break; } } } var scoreThreshold = options.scoreThreshold.call(this); - // this.debug("scoreThreshold:", scoreThreshold); - // this.debug("bestMatch.score:", bestMatch.score); + // console.debug("scoreThreshold:", scoreThreshold); + // console.debug("bestMatch.score:", bestMatch.score); if (bestMatch.score >= scoreThreshold) { //console.debug( 'autoPairFnBuilder.strategy', listA[ indexA ].name, listB[ bestMatch.index ].name ); @@ -975,8 +975,8 @@ export default { return paired; } } - // this.debug("paired:", JSON.stringify(paired, null, " ")); - // this.debug("autopair _strategy ---------------------------"); + // console.debug("paired:", JSON.stringify(paired, null, " ")); + // console.debug("autopair _strategy ---------------------------"); return paired; }; }, diff --git a/client/src/components/Datatypes/test-data/datatypes.json b/client/src/components/Datatypes/test-data/datatypes.json deleted file mode 120000 index f32f2aee513..00000000000 --- a/client/src/components/Datatypes/test-data/datatypes.json +++ /dev/null @@ -1 +0,0 @@ -../../../../tests/qunit/test-data/json/datatypes.json \ No newline at end of file diff --git a/client/src/components/Datatypes/test-data/datatypes.mapping.json b/client/src/components/Datatypes/test-data/datatypes.mapping.json deleted file mode 120000 index de79c06a39b..00000000000 --- a/client/src/components/Datatypes/test-data/datatypes.mapping.json +++ /dev/null @@ -1 +0,0 @@ -../../../../tests/qunit/test-data/json/datatypes.mapping.json \ No newline at end of file diff --git a/client/src/components/Datatypes/test_fixtures.ts b/client/src/components/Datatypes/test_fixtures.ts index 0e58ccb475c..3108af7025f 100644 --- a/client/src/components/Datatypes/test_fixtures.ts +++ b/client/src/components/Datatypes/test_fixtures.ts @@ -1,6 +1,6 @@ // TODO: Swap these awful relative paths to an alias -import DatatypesMappingJson from "./test-data/datatypes.mapping.json"; -import DatatypesJson from "./test-data/datatypes.json"; +import DatatypesMappingJson from "@tests/test-data/json/datatypes.mapping.json"; +import DatatypesJson from "@tests/test-data/json/datatypes.json"; import { DatatypesMapperModel } from "./model"; import type { DatatypesCombinedMap } from "./model"; diff --git a/client/src/components/Form/Elements/parameters.js b/client/src/components/Form/Elements/parameters.js index c9fbc13a745..b2b9bfec050 100644 --- a/client/src/components/Form/Elements/parameters.js +++ b/client/src/components/Form/Elements/parameters.js @@ -37,12 +37,11 @@ export default Backbone.View.extend({ /** Returns an input field for a given field type */ create: function (input_def) { - const Galaxy = getGalaxyInstance(); var fieldClass = this.types[input_def.type]; this.field = typeof this[fieldClass] === "function" ? this[fieldClass].call(this, input_def) : null; if (!this.field) { this.field = input_def.options ? this._fieldSelect(input_def) : this._fieldText(input_def); - Galaxy.emit.debug("form-parameters::_addRow()", `Auto matched field type (${input_def.type}).`); + console.debug("form-parameters::_addRow()", `Auto matched field type (${input_def.type}).`); } if (input_def.value === undefined) { input_def.value = null; diff --git a/client/src/components/History/Export/HistoryExport.test.ts b/client/src/components/History/Export/HistoryExport.test.ts index e2ec1de4f38..73021ce655c 100644 --- a/client/src/components/History/Export/HistoryExport.test.ts +++ b/client/src/components/History/Export/HistoryExport.test.ts @@ -8,7 +8,7 @@ import { } from "@/components/Common/models/testData/exportData"; import flushPromises from "flush-promises"; import type { components } from "@/schema"; -import { getLocalVue } from "../../../../tests/jest/helpers"; +import { getLocalVue } from "@tests/jest/helpers"; import HistoryExport from "./HistoryExport.vue"; import { getExportRecords } from "./services"; diff --git a/client/src/components/Libraries/LibraryFolder/TopToolbar/library-model.js b/client/src/components/Libraries/LibraryFolder/TopToolbar/library-model.js index e81e344c49c..3db3e4a2e6e 100644 --- a/client/src/components/Libraries/LibraryFolder/TopToolbar/library-model.js +++ b/client/src/components/Libraries/LibraryFolder/TopToolbar/library-model.js @@ -1,6 +1,5 @@ import Backbone from "backbone"; import { getAppRoot } from "onload/loadConfig"; -import { getGalaxyInstance } from "app"; // ============================================================================ // HELPER FUNCTIONS @@ -140,7 +139,6 @@ var FolderContainer = Backbone.Model.extend({ }, parse: function (obj) { - const Galaxy = getGalaxyInstance(); // empty the collection this.get("folder").reset(); // response is not a simple array, it contains metadata @@ -153,7 +151,7 @@ var FolderContainer = Backbone.Model.extend({ var file_item = new Ldda(obj.folder_contents[i]); this.get("folder").add(file_item); } else { - Galaxy.emit.error("Unknown folder item type encountered while parsing response."); + console.error("Unknown folder item type encountered while parsing response."); } } return obj; diff --git a/client/src/components/User/DiskUsage/Management/Cleanup/CleanupOperationSummary.test.ts b/client/src/components/User/DiskUsage/Management/Cleanup/CleanupOperationSummary.test.ts index 50f75803877..ea56e1bb073 100644 --- a/client/src/components/User/DiskUsage/Management/Cleanup/CleanupOperationSummary.test.ts +++ b/client/src/components/User/DiskUsage/Management/Cleanup/CleanupOperationSummary.test.ts @@ -1,6 +1,6 @@ import { mount } from "@vue/test-utils"; import flushPromises from "flush-promises"; -import { getLocalVue } from "../../../../../../tests/jest/helpers"; +import { getLocalVue } from "@tests/jest/helpers"; import CleanupOperationSummary from "./CleanupOperationSummary.vue"; import { CleanableSummary, type CleanupOperation, CleanupResult } from "./model"; diff --git a/client/src/mvc/ui/ui-select-content.js b/client/src/mvc/ui/ui-select-content.js index 11de437c075..eebc06d92cc 100644 --- a/client/src/mvc/ui/ui-select-content.js +++ b/client/src/mvc/ui/ui-select-content.js @@ -222,7 +222,6 @@ const View = Backbone.View.extend({ /** Return the currently selected dataset values */ value: function (new_value) { - const galaxy = getGalaxyInstance(); if (new_value) { this._patchValue(new_value); this.model.set("value", new_value); @@ -240,7 +239,7 @@ const View = Backbone.View.extend({ const unpatchedValue = this._unpatchValue(details); result.values.push(unpatchedValue); } else { - galaxy.emit.debug( + console.debug( "ui-select-content::value()", `Requested details not found for '${id_list[i]}'.` ); @@ -252,7 +251,7 @@ const View = Backbone.View.extend({ } } } else { - galaxy.emit.debug("ui-select-content::value()", `Invalid value/source '${new_value}'.`); + console.debug("ui-select-content::value()", `Invalid value/source '${new_value}'.`); } return null; }, @@ -303,7 +302,7 @@ const View = Backbone.View.extend({ this.config = Configurations[config_id]; } else { this.config = Configurations["data"]; - galaxy.emit.debug("ui-select-content::_changeType()", `Invalid configuration/type id '${config_id}'.`); + console.debug("ui-select-content::_changeType()", `Invalid configuration/type id '${config_id}'.`); } // prepare extension component of error message diff --git a/client/src/mvc/visualization/chart/views/repeat.js b/client/src/mvc/visualization/chart/views/repeat.js index 49965337d01..6d599a63dec 100644 --- a/client/src/mvc/visualization/chart/views/repeat.js +++ b/client/src/mvc/visualization/chart/views/repeat.js @@ -3,7 +3,6 @@ import _l from "utils/localization"; import _ from "underscore"; import $ from "jquery"; import Backbone from "backbone"; -import { getGalaxyInstance } from "app"; import Utils from "utils/utils"; import Portlet from "./portlet"; import Ui from "mvc/ui/ui-misc"; @@ -42,9 +41,8 @@ export var View = Backbone.View.extend({ /** Add new repeat block */ add: function (options) { - const Galaxy = getGalaxyInstance(); if (!options.id || this.list[options.id]) { - Galaxy.emit.debug("form-repeat::add()", "Duplicate or invalid repeat block id."); + console.debug("form-repeat::add()", "Duplicate or invalid repeat block id."); return; } var button_delete = new Ui.Button({ @@ -75,9 +73,8 @@ export var View = Backbone.View.extend({ /** Delete repeat block */ del: function (id) { - const Galaxy = getGalaxyInstance(); if (!this.list[id]) { - Galaxy.emit.debug("form-repeat::del()", "Invalid repeat block id."); + console.debug("form-repeat::del()", "Invalid repeat block id."); return; } this.$list.find(`#${id}`).remove(); diff --git a/client/src/mvc/visualization/visualization-model.js b/client/src/mvc/visualization/visualization-model.js index 4de04f2b102..5f929d0cfc2 100644 --- a/client/src/mvc/visualization/visualization-model.js +++ b/client/src/mvc/visualization/visualization-model.js @@ -10,10 +10,6 @@ import { getAppRoot } from "onload/loadConfig"; */ export var Visualization = Backbone.Model.extend( /** @lends Visualization.prototype */ { - ///** logger used to record this.log messages, commonly set to console */ - //// comment this out to suppress log output - //logger : console, - /** default attributes for a model */ defaults: { config: {}, @@ -29,8 +25,6 @@ export var Visualization = Backbone.Model.extend( * @see Backbone.Model#initialize */ initialize: function (data) { - //this.log( this + '.initialize', data, this.attributes ); - // munge config sub-object here since bbone won't handle defaults with this if (_.isObject(data.config) && _.isObject(this.defaults.config)) { _.defaults(data.config, this.defaults.config); @@ -84,10 +78,6 @@ export var VisualizationCollection = Backbone.Collection.extend( /** @lends VisualizationCollection.prototype */ { model: Visualization, - ///** logger used to record this.log messages, commonly set to console */ - //// comment this out to suppress log output - //logger : console, - url: function () { return `${getAppRoot()}api/visualizations`; }, diff --git a/client/src/onload/defaultAppFactory.js b/client/src/onload/defaultAppFactory.js index c8f3ed3684e..c1ddc68a19a 100644 --- a/client/src/onload/defaultAppFactory.js +++ b/client/src/onload/defaultAppFactory.js @@ -11,7 +11,7 @@ export const defaultAppFactory = (config, label = "Galaxy") => { return setGalaxyInstance((GalaxyApp) => { const { options, bootstrapped } = config; const app = new GalaxyApp(options, bootstrapped); - app.debug(`${label} app`); + console.debug(`${label} app`); return app; }); }; diff --git a/client/src/utils/add-logging.js b/client/src/utils/add-logging.js deleted file mode 100644 index 9b9f040930d..00000000000 --- a/client/src/utils/add-logging.js +++ /dev/null @@ -1,35 +0,0 @@ -//============================================================================== -var LOGGING_FNS = ["log", "debug", "info", "warn", "error", "metric"]; -/** adds logging functions to an obj.prototype (or obj directly) adding a namespace for filtering - * @param {Object} obj - * @param {String} namespace - */ -function addLogging(obj, namespace) { - var addTo = obj.prototype !== undefined ? obj.prototype : obj; - if (namespace !== undefined) { - addTo._logNamespace = namespace; - } - - // give the object each - LOGGING_FNS.forEach((logFn) => { - addTo[logFn] = function () { - if (!this.logger) { - return undefined; - } - if (this.logger.emit) { - return this.logger.emit(logFn, this._logNamespace, arguments); - } - if (this.logger[logFn]) { - //TODO:! there has to be a way to get the lineno/file into this - // http://stackoverflow.com/questions/13815640/a-proper-wrapper-for-console-log-with-correct-line-number - // http://www.paulirish.com/2009/log-a-lightweight-wrapper-for-consolelog/ - return this.logger[logFn].apply(this.logger, arguments); - } - return undefined; - }; - }); - return obj; -} - -//============================================================================== -export default addLogging; diff --git a/client/src/utils/deferred.js b/client/src/utils/deferred.js index 7dfe38996a1..ae13f556888 100644 --- a/client/src/utils/deferred.js +++ b/client/src/utils/deferred.js @@ -4,7 +4,6 @@ import $ from "jquery"; import Backbone from "backbone"; import Utils from "utils/utils"; -import { getGalaxyInstance } from "app"; export default Backbone.Model.extend({ initialize: function () { @@ -19,7 +18,6 @@ export default Backbone.Model.extend({ var self = this; var id = Utils.uid(); var has_deferred = callback.length > 0; - const Galaxy = getGalaxyInstance(); // register process this.active[id] = true; @@ -29,7 +27,7 @@ export default Backbone.Model.extend({ process.promise().always(function () { delete self.active[id]; has_deferred && - Galaxy.emit.debug( + console.debug( "deferred::execute()", `${this.state().charAt(0).toUpperCase() + this.state().slice(1)} ${id}` ); @@ -38,7 +36,7 @@ export default Backbone.Model.extend({ // deferred queue $.when(this.last).always(() => { if (self.active[id]) { - has_deferred && Galaxy.emit.debug("deferred::execute()", `Running ${id}`); + has_deferred && console.debug("deferred::execute()", `Running ${id}`); callback(process); !has_deferred && process.resolve(); } else { @@ -51,8 +49,7 @@ export default Backbone.Model.extend({ /** Resets the promise queue. All currently queued but unexecuted callbacks/promises will be rejected. */ reset: function () { - const Galaxy = getGalaxyInstance(); - Galaxy.emit.debug("deferred::execute()", "Reset"); + console.debug("deferred::execute()", "Reset"); for (var i in this.active) { this.active[i] = false; } diff --git a/client/src/utils/graph.js b/client/src/utils/graph.js deleted file mode 100644 index 0f5a5675268..00000000000 --- a/client/src/utils/graph.js +++ /dev/null @@ -1,623 +0,0 @@ -/** deep equal of two dictionaries */ -function matches(d, d2) { - for (var k in d2) { - if (Object.prototype.hasOwnProperty.call(d2, k)) { - if (!Object.prototype.hasOwnProperty.call(d, k) || d[k] !== d2[k]) { - return false; - } - } - } - return true; -} - -/** map key/values in obj - * if propsOrFn is an object, return only those k/v that match the object - * if propsOrFn is function, call the fn and returned the mapped values from it - */ -function iterate(obj, propsOrFn) { - var fn = typeof propsOrFn === "function" ? propsOrFn : undefined; - var props = typeof propsOrFn === "object" ? propsOrFn : undefined; - var returned = []; - var index = 0; - for (var key in obj) { - if (Object.prototype.hasOwnProperty.call(obj, key)) { - var value = obj[key]; - if (fn) { - returned.push(fn.call(value, value, key, index)); - } else if (props) { - //TODO: break out to sep? - if (typeof value === "object" && matches(value, props)) { - returned.push(value); - } - } else { - returned.push(value); - } - index += 1; - } - } - return returned; -} - -// ============================================================================ -/** A graph edge containing the name/id of both source and target and optional data - */ -function Edge(source, target, data) { - var self = this; - self.source = source !== undefined ? source : null; - self.target = target !== undefined ? target : null; - self.data = data || null; - //if( typeof data === 'object' ){ - // extend( self, data ); - //} - return self; -} -/** String representation */ -Edge.prototype.toString = function () { - return `${this.source}->${this.target}`; -}; - -/** Return a plain object representing this edge */ -Edge.prototype.toJSON = function () { - //TODO: this is safe in most browsers (fns will be stripped) - alter tests to incorporate this in order to pass data - //return this; - var json = { - source: this.source, - target: this.target, - }; - if (this.data) { - json.data = this.data; - } - return json; -}; - -// ============================================================================ -/** A graph vertex with a (unique) name/id and optional data. - * A vertex contains a list of Edges (whose sources are this vertex) and maintains the degree. - */ -function Vertex(name, data) { - var self = this; - self.name = name !== undefined ? name : "(unnamed)"; - self.data = data || null; - self.edges = {}; - self.degree = 0; - return self; -} - -/** String representation */ -Vertex.prototype.toString = function () { - return `Vertex(${this.name})`; -}; - -//TODO: better name w no collision for either this.eachEdge or this.edges -/** Iterate over each edge from this vertex */ -Vertex.prototype.eachEdge = function (propsOrFn) { - return iterate(this.edges, propsOrFn); -}; - -/** Return a plain object representing this vertex */ -Vertex.prototype.toJSON = function () { - //return this; - return { - name: this.name, - data: this.data, - }; -}; - -// ============================================================================ -/** Base (abstract) class for Graph search algorithms. - * Pass in the graph to search - * and an optional dictionary containing the 3 vertex/edge processing fns listed below. - */ -var GraphSearch = function (graph, processFns) { - var self = this; - self.graph = graph; - - self.processFns = processFns || { - vertexEarly: function (vertex, search) { - //console.debug( 'processing vertex:', vertex.name, vertex ); - }, - edge: function (from, edge, search) { - //console.debug( this, 'edge:', from, edge, search ); - }, - vertexLate: function (vertex, search) { - //console.debug( this, 'vertexLate:', vertex, search ); - }, - }; - - self._cache = {}; - return self; -}; - -/** Search interface where start is the vertex (or the name/id of the vertex) to begin the search at - * This public interface caches searches and returns the cached version if it's already been done. - */ -GraphSearch.prototype.search = function _search(start) { - var self = this; - if (start in self._cache) { - return self._cache[start]; - } - if (!(start instanceof Vertex)) { - start = self.graph.vertices[start]; - } - return (self._cache[start.name] = self._search(start)); -}; - -/** Actual search (private) function (abstract here) */ -GraphSearch.prototype._search = function __search(start, search) { - search = search || { - discovered: {}, - //parents : {}, - edges: [], - }; - return search; -}; - -/** Searches graph from start and returns a search tree of the results */ -GraphSearch.prototype.searchTree = function _searchTree(start) { - return this._searchTree(this.search(start)); -}; - -/** Helper fn that returns a graph (a search tree) based on the search object passed in (does not actually search) */ -GraphSearch.prototype._searchTree = function __searchTree(search) { - var self = this; - return new Graph(true, { - edges: search.edges, - vertices: Object.keys(search.discovered).map((key) => self.graph.vertices[key].toJSON()), - }); -}; - -// ============================================================================ -/** Breadth first search algo. - */ -var BreadthFirstSearch = function (graph, processFns) { - var self = this; - GraphSearch.call(this, graph, processFns); - return self; -}; -BreadthFirstSearch.prototype = new GraphSearch(); -BreadthFirstSearch.prototype.constructor = BreadthFirstSearch; - -/** (Private) implementation of BFS */ -BreadthFirstSearch.prototype._search = function __search(start, search) { - search = search || { - discovered: {}, - //parents : {}, - edges: [], - }; - - var self = this; - var queue = []; - - function discoverAdjacent(adj, edge) { - var source = this; - if (self.processFns.edge) { - self.processFns.edge.call(self, source, edge, search); - } - if (!search.discovered[adj.name]) { - //console.debug( '\t\t\t', adj.name, 'is undiscovered:', search.discovered[ adj.name ] ); - search.discovered[adj.name] = true; - //search.parents[ adj.name ] = source; - search.edges.push({ source: source.name, target: adj.name }); - //console.debug( '\t\t\t queuing undiscovered: ', adj ); - queue.push(adj); - } - } - - //console.debug( 'BFS starting. start:', start ); - search.discovered[start.name] = true; - queue.push(start); - while (queue.length) { - var vertex = queue.shift(); - //console.debug( '\t Queue is shifting. Current:', vertex, 'queue:', queue ); - if (self.processFns.vertexEarly) { - self.processFns.vertexEarly.call(self, vertex, search); - } - self.graph.eachAdjacent(vertex, discoverAdjacent); - if (self.processFns.vertexLate) { - self.processFns.vertexLate.call(self, vertex, search); - } - } - //console.debug( 'search.edges:', JSON.stringify( search.edges ) ); - return search; -}; - -// ============================================================================ -/** Depth first search algorithm. - */ -var DepthFirstSearch = function (graph, processFns) { - var self = this; - GraphSearch.call(this, graph, processFns); - return self; -}; -DepthFirstSearch.prototype = new GraphSearch(); -DepthFirstSearch.prototype.constructor = DepthFirstSearch; - -/** (Private) implementation of DFS */ -DepthFirstSearch.prototype._search = function (start, search) { - //console.debug( 'depthFirstSearch:', start ); - search = search || { - discovered: {}, - //parents : {}, - edges: [], - entryTimes: {}, - exitTimes: {}, - }; - var self = this; - var time = 0; - - // discover verts adjacent to the source (this): - // processing each edge, saving the edge to the tree, and caching the reverse path with parents - function discoverAdjacentVertices(adjacent, edge) { - //console.debug( '\t\t adjacent:', adjacent, 'edge:', edge ); - var sourceVertex = this; - if (self.processFns.edge) { - self.processFns.edge.call(self, sourceVertex, edge, search); - } - if (!search.discovered[adjacent.name]) { - //search.parents[ adjacent.name ] = sourceVertex; - search.edges.push({ - source: sourceVertex.name, - target: adjacent.name, - }); - recurse(adjacent); - } - } - - // use function stack for DFS stack process verts, times, and discover adjacent verts (recursing into them) - function recurse(vertex) { - //console.debug( '\t recursing into: ', vertex ); - search.discovered[vertex.name] = true; - if (self.processFns.vertexEarly) { - self.processFns.vertexEarly.call(self, vertex, search); - } - search.entryTimes[vertex.name] = time++; - - self.graph.eachAdjacent(vertex, discoverAdjacentVertices); - - if (self.processFns.vertexLate) { - self.processFns.vertexLate.call(self, vertex, search); - } - search.exitTimes[vertex.name] = time++; - } - // begin recursion with the desired start - recurse(start); - - return search; -}; - -// ============================================================================ -/** A directed/non-directed graph object. - */ -function Graph(directed, data, options) { - //TODO: move directed to options - this.directed = directed || false; - return this.init(options).read(data); -} -window.Graph = Graph; - -/** Set up options and instance variables */ -Graph.prototype.init = function (options) { - options = options || {}; - var self = this; - - self.allowReflexiveEdges = options.allowReflexiveEdges || false; - - self.vertices = {}; - self.numEdges = 0; - return self; -}; - -/** Read data from the plain object data - both in d3 form (nodes and links) or vertices and edges */ -Graph.prototype.read = function (data) { - if (!data) { - return this; - } - var self = this; - if (Object.prototype.hasOwnProperty.call(data, "nodes")) { - return self.readNodesAndLinks(data); - } - if (Object.prototype.hasOwnProperty.call(data, "vertices")) { - return self.readVerticesAndEdges(data); - } - return self; -}; - -//TODO: the next two could be combined -/** Create the graph using a list of nodes and a list of edges (where source and target are indeces into nodes) */ -Graph.prototype.readNodesAndLinks = function (data) { - if (!(data && Object.prototype.hasOwnProperty.call(data, "nodes"))) { - return this; - } - //console.debug( 'readNodesAndLinks:', data ); - //console.debug( 'data:\n' + JSON.stringify( data, null, ' ' ) ); - var self = this; - data.nodes.forEach((node) => { - self.createVertex(node.name, node.data); - }); - //console.debug( JSON.stringify( self.vertices, null, ' ' ) ); - - (data.links || []).forEach((edge, i) => { - var sourceName = data.nodes[edge.source].name; - var targetName = data.nodes[edge.target].name; - self.createEdge(sourceName, targetName, self.directed); - }); - //self.print(); - //console.debug( JSON.stringify( self.toNodesAndLinks(), null, ' ' ) ); - return self; -}; - -/** Create the graph using a list of nodes and a list of edges (where source and target are names of nodes) */ -Graph.prototype.readVerticesAndEdges = function (data) { - if (!(data && Object.prototype.hasOwnProperty.call(data, "vertices"))) { - return this; - } - //console.debug( 'readVerticesAndEdges:', data ); - //console.debug( 'data:\n' + JSON.stringify( data, null, ' ' ) ); - var self = this; - data.vertices.forEach((node) => { - self.createVertex(node.name, node.data); - }); - //console.debug( JSON.stringify( self.vertices, null, ' ' ) ); - - (data.edges || []).forEach((edge, i) => { - self.createEdge(edge.source, edge.target, self.directed); - }); - //self.print(); - //console.debug( JSON.stringify( self.toNodesAndLinks(), null, ' ' ) ); - return self; -}; - -/** Return the vertex with name, creating it if necessary */ -Graph.prototype.createVertex = function (name, data) { - //console.debug( 'createVertex:', name, data ); - if (this.vertices[name]) { - return this.vertices[name]; - } - return (this.vertices[name] = new Vertex(name, data)); -}; - -/** Create an edge in vertex named sourceName to targetName (optionally adding data to it) - * If directed is false, create a second edge from targetName to sourceName. - */ -Graph.prototype.createEdge = function (sourceName, targetName, directed, data) { - //note: allows multiple 'equivalent' edges (to/from same source/target) - //console.debug( 'createEdge:', source, target, directed ); - var isReflexive = sourceName === targetName; - if (!this.allowReflexiveEdges && isReflexive) { - return null; - } - - var sourceVertex = this.vertices[sourceName]; - var targetVertex = this.vertices[targetName]; - //note: silently ignores edges from/to unknown vertices - if (!(sourceVertex && targetVertex)) { - return null; - } - - //TODO: prob. move to vertex - var self = this; - - var edge = new Edge(sourceName, targetName, data); - sourceVertex.edges[targetName] = edge; - sourceVertex.degree += 1; - self.numEdges += 1; - - //TODO:! don't like having duplicate edges for non-directed graphs - // mirror edges (reversing source and target) in non-directed graphs - // but only if not reflexive - if (!isReflexive && !directed) { - // flip directed to prevent recursion loop - self.createEdge(targetName, sourceName, true); - } - - return edge; -}; - -/** Walk over all the edges of the graph using the vertex.eachEdge iterator */ -Graph.prototype.edges = function (propsOrFn) { - return Array.prototype.concat.apply( - [], - this.eachVertex((vertex) => vertex.eachEdge(propsOrFn)) - ); -}; - -/** Iterate over all the vertices in the graph */ -Graph.prototype.eachVertex = function (propsOrFn) { - return iterate(this.vertices, propsOrFn); -}; - -/** Return a list of the vertices adjacent to vertex */ -Graph.prototype.adjacent = function (vertex) { - var self = this; - return iterate(vertex.edges, (edge) => self.vertices[edge.target]); -}; - -/** Call fn on each vertex adjacent to vertex */ -Graph.prototype.eachAdjacent = function (vertex, fn) { - var self = this; - return iterate(vertex.edges, (edge) => { - var adj = self.vertices[edge.target]; - return fn.call(vertex, adj, edge); - }); -}; - -/** Print the graph to the console (debugging) */ -Graph.prototype.print = function () { - var self = this; - console.log(`Graph has ${Object.keys(self.vertices).length} vertices`); - self.eachVertex((vertex) => { - console.log(vertex.toString()); - vertex.eachEdge((edge) => { - console.log(`\t ${edge}`); - }); - }); - return self; -}; - -/** Return a DOT format string of this graph */ -Graph.prototype.toDOT = function () { - var self = this; - var strings = []; - strings.push("graph bler {"); - self.edges((edge) => { - strings.push(`\t${edge.from} -- ${edge.to};`); - }); - strings.push("}"); - return strings.join("\n"); -}; - -/** Return vertices and edges of this graph in d3 node/link format */ -Graph.prototype.toNodesAndLinks = function () { - var self = this; - var indeces = {}; - return { - nodes: self.eachVertex((vertex, key, i) => { - indeces[vertex.name] = i; - return vertex.toJSON(); - }), - links: self.edges((edge) => { - var json = edge.toJSON(); - json.source = indeces[edge.source]; - json.target = indeces[edge.target]; - return json; - }), - }; -}; - -/** Return vertices and edges of this graph where edges use the name/id as source and target */ -Graph.prototype.toVerticesAndEdges = function () { - var self = this; - return { - vertices: self.eachVertex((vertex, key) => vertex.toJSON()), - edges: self.edges((edge) => edge.toJSON()), - }; -}; - -/** Search this graph using BFS */ -Graph.prototype.breadthFirstSearch = function (start, processFns) { - return new BreadthFirstSearch(this).search(start); -}; - -/** Return a searchtree of this graph using BFS */ -Graph.prototype.breadthFirstSearchTree = function (start, processFns) { - return new BreadthFirstSearch(this).searchTree(start); -}; - -/** Search this graph using DFS */ -Graph.prototype.depthFirstSearch = function (start, processFns) { - return new DepthFirstSearch(this).search(start); -}; - -/** Return a searchtree of this graph using DFS */ -Graph.prototype.depthFirstSearchTree = function (start, processFns) { - return new DepthFirstSearch(this).searchTree(start); -}; - -//Graph.prototype.shortestPath = function( start, end ){ -//}; -// -//Graph.prototype.articulationVertices = function(){ -//}; -// -//Graph.prototype.isAcyclic = function(){ -//}; -// -//Graph.prototype.isBipartite = function(){ -//}; - -/** Return an array of weakly connected (no edges between) sub-graphs in this graph */ -Graph.prototype.weakComponents = function () { - //TODO: alternately, instead of returning graph-like objects: - // - could simply decorate the vertices (vertex.component = componentIndex), or clone the graph and do that - var self = this; - - var searchGraph = this; - var undiscovered; - var components = []; - - function getComponent(undiscoveredVertex) { - //TODO: better interface on dfs (search v. searchTree) - var search = new DepthFirstSearch(searchGraph)._search(undiscoveredVertex); - - // remove curr discovered from undiscovered - undiscovered = undiscovered.filter((name) => !(name in search.discovered)); - - return { - vertices: Object.keys(search.discovered).map((vertexName) => self.vertices[vertexName].toJSON()), - edges: search.edges.map((edge) => { - // restore any reversed edges - var hasBeenReversed = self.vertices[edge.target].edges[edge.source] !== undefined; - if (self.directed && hasBeenReversed) { - var swap = edge.source; - edge.source = edge.target; - edge.target = swap; - } - return edge; - }), - }; - } - - if (self.directed) { - // if directed - convert to undirected for search - searchGraph = new Graph(false, self.toNodesAndLinks()); - } - undiscovered = Object.keys(searchGraph.vertices); - //console.debug( '(initial) undiscovered:', undiscovered ); - while (undiscovered.length) { - var undiscoveredVertex = searchGraph.vertices[undiscovered.shift()]; - components.push(getComponent(undiscoveredVertex)); - //console.debug( 'undiscovered now:', undiscovered ); - } - - //console.debug( 'components:\n', JSON.stringify( components, null, ' ' ) ); - return components; -}; - -/** Return a single graph containing the weakly connected components in this graph */ -Graph.prototype.weakComponentGraph = function () { - //note: although this can often look like the original graph - edges can be lost - var components = this.weakComponents(); - return new Graph(this.directed, { - vertices: components.reduce((reduction, curr) => reduction.concat(curr.vertices), []), - edges: components.reduce((reduction, curr) => reduction.concat(curr.edges), []), - }); -}; - -/** Return an array of graphs of the weakly connected components in this graph */ -Graph.prototype.weakComponentGraphArray = function () { - //note: although this can often look like the original graph - edges can be lost - var graph = this; - return this.weakComponents().map((component) => new Graph(graph.directed, component)); -}; - -// ============================================================================ -/** Create a random graph with numVerts vertices and numEdges edges (for testing) - */ -function randGraph(directed, numVerts, numEdges) { - //console.debug( 'randGraph', directed, numVerts, numEdges ); - var data = { nodes: [], links: [] }; - function randRange(range) { - return Math.floor(Math.random() * range); - } - for (var i = 0; i < numVerts; i++) { - data.nodes.push({ name: i }); - } - for (i = 0; i < numEdges; i++) { - data.links.push({ - source: randRange(numVerts), - target: randRange(numVerts), - }); - } - //console.debug( JSON.stringify( data, null, ' ' ) ); - return new Graph(directed, data); -} - -// ============================================================================ -export default { - Vertex: Vertex, - Edge: Edge, - BreadthFirstSearch: BreadthFirstSearch, - DepthFirstSearch: DepthFirstSearch, - Graph: Graph, - randGraph: randGraph, -}; diff --git a/client/src/utils/metrics-logger.js b/client/src/utils/metrics-logger.js deleted file mode 100644 index ab9f5ea2338..00000000000 --- a/client/src/utils/metrics-logger.js +++ /dev/null @@ -1,504 +0,0 @@ -/*============================================================================= -TODO: - while anon: logs saved to 'logs-null' - this will never post - unless we manually do so at/after login - OR prepend when userId and localStorage has 'logs-null' - wire up _delayPost and test - -=============================================================================*/ -/** @class MetricsLogger - * - * Object to cache, output, and post log/metric messages to the server. - * Meant to be attached to the Galaxy object. - * - * Log from objects by either attaching logger directly: - * panel.logger.metric( 'user dataset deletion', panel.user.id, hda.toJSON() ) - * or using the LoggableMixin or addLogging function: - * MyBackboneModel.extend( LoggableMixin ).extend({ ... }) - * addLogging( MyBackboneModel, 'my-backbone-model' ) - * - * Log from templates by calling directly from Galaxy object: - * Galaxy.logger.metric( 'template loaded', { ownedByUser : true }); - * - * If you attempt to log an un-serializable object (circular reference, window, etc.), - * that entry will not be cached (or sent). If you set consoleLevel and consoleLogger - * appropriately, a warning will be shown when this happens: - * > panel.metric( 'something weird with window', { window : window }) - * !'Metrics logger could not stringify logArguments: ...' - */ -import jQuery from "jquery"; - -function MetricsLogger(options) { - options = options || {}; - var self = this; - - ///** get the current user's id from bootstrapped data or options */ - self.userId = window.bootstrapped && window.bootstrapped.user ? window.bootstrapped.user.id : null; - self.userId = self.userId || options.userId || null; - - /** the (optional) console to emit logs to */ - self.consoleLogger = options.consoleLogger || null; - - self._init(options); - return self; -} - -//----------------------------------------------------------------------------- defaults and constants -// see: python std lib, logging -MetricsLogger.ALL = 0; -MetricsLogger.LOG = 0; -MetricsLogger.DEBUG = 10; -MetricsLogger.INFO = 20; -MetricsLogger.WARN = 30; -MetricsLogger.ERROR = 40; -// metrics levels here? -//MetricsLogger.MinorEvent = 45; -//MetricsLogger.MajorEvent = 50; -MetricsLogger.METRIC = 50; -MetricsLogger.NONE = 100; - -/** default options - override these through the constructor */ -MetricsLogger.defaultOptions = { - /** if an incoming message has a level >= this, it will be cached - can also be a string (e.g. 'debug') */ - logLevel: MetricsLogger.NONE, - /** if an incoming message has a level >= this, it will be output to the console */ - consoleLevel: MetricsLogger.NONE, - /** the default 'namespace' or label associated with an incoming message (if none is passed) */ - defaultNamespace: "Galaxy", - /** the namespaces output to the console (all namespaces will be output if this is falsy) - * note: applies only to the console (not the event/metrics log/cache) - */ - consoleNamespaceWhitelist: null, - /** Force all messages into simple strings. */ - consoleFlattenMessages: false, - /** the prefix attached to client-side logs to distinguish them in the metrics db */ - clientPrefix: "client.", - - /** the maximum number of messages the cache should hold; if exceeded older messages are removed first */ - maxCacheSize: 3000, - /** the number of messages accumulate before posting to the server; should be <= maxCacheSize */ - postSize: 1000, - /** T/F whether to add a timestamp to incoming cached messages */ - addTime: true, - /** string to prefix to userid for cache web storage */ - cacheKeyPrefix: "logs-", - - /** the relative url to post messages to */ - postUrl: "/api/metrics", - /** delay before trying post again after two failures */ - delayPostInMs: 1000 * 60 * 10, - - /** an (optional) function that should return an object; used to send additional data with the metrics */ - getPingData: undefined, - /** an (optional) function that will handle the servers response after successfully posting messages */ - onServerResponse: undefined, -}; - -//----------------------------------------------------------------------------- set up -/** initialize the logger with options, set up instance vars and cache, and add onpageunload to window */ -MetricsLogger.prototype._init = function _init(options) { - var self = this; - self.options = {}; - for (var k in MetricsLogger.defaultOptions) { - if (Object.prototype.hasOwnProperty.call(MetricsLogger.defaultOptions, k)) { - self.options[k] = Object.prototype.hasOwnProperty.call(options, k) - ? options[k] - : MetricsLogger.defaultOptions[k]; - } - } - self.options.logLevel = self._parseLevel(self.options.logLevel); - self.options.consoleLevel = self._parseLevel(self.options.consoleLevel); - //self._emitToConsole( 'debug', 'MetricsLogger', 'MetricsLogger.options:', self.options ); - - /** is the logger currently sending? */ - self._sending = false; - /** the setTimeout id if the logger POST has failed more than once */ - self._waiting = null; - /** the current number of entries to send in a POST */ - self._postSize = self.options.postSize; - - self._initCache(); - - return self; -}; - -/** initialize the cache */ -MetricsLogger.prototype._initCache = function _initCache() { - try { - this.cache = new LoggingCache({ - maxSize: this.options.maxCacheSize, - key: this.options.cacheKeyPrefix + this.userId, - }); - } catch (err) { - this._emitToConsole("warn", "MetricsLogger", ["Could not intitialize logging cache:", err]); - this.options.logLevel = MetricsLogger.NONE; - } -}; - -/** return the numeric log level if level in 'none, debug, log, info, warn, error' */ -MetricsLogger.prototype._parseLevel = function _parseLevel(level) { - var type = typeof level; - if (type === "number") { - return level; - } - if (type === "string") { - var upper = level.toUpperCase(); - if (Object.prototype.hasOwnProperty.call(MetricsLogger, upper)) { - return MetricsLogger[upper]; - } - } - throw new Error(`Unknown log level: ${level}`); -}; - -//----------------------------------------------------------------------------- main entry point -/** record a log/message's arguments to the cache and/or the console based on level and namespace */ -MetricsLogger.prototype.emit = function emit(level, namespace, logArguments) { - //this._emitToConsole( 'debug', 'MetricsLogger', [ 'emit:', level, namespace, logArguments ]); - var self = this; - namespace = namespace || self.options.defaultNamespace; - if (!level || !logArguments) { - return self; - } - // add to cache if proper level - //TODO: respect do not track? - //if( !navigator.doNotTrack && level >= self.options.logLevel ){ - level = self._parseLevel(level); - if (level >= self.options.logLevel) { - self._addToCache(level, namespace, logArguments); - } - // also emit to consoleLogger if proper level for that - if (self.consoleLogger && level >= self.options.consoleLevel) { - self._emitToConsole(level, namespace, logArguments); - } - return self; -}; - -//----------------------------------------------------------------------------- cache -/** add a message to the cache and if messages.length is high enough post them to the server */ -MetricsLogger.prototype._addToCache = function _addToCache(level, namespace, logArguments) { - this._emitToConsole("debug", "MetricsLogger", [ - "_addToCache:", - arguments, - this.options.addTime, - this.cache.length(), - ]); - //this._emitToConsole( 'debug', 'MetricsLogger', [ '\t logArguments:', logArguments ]); - var self = this; - // try add to the cache and if we've got _postSize number of entries, attempt to post them to the server - try { - var newLength = self.cache.add(self._buildEntry(level, namespace, logArguments)); - if (newLength >= self._postSize) { - self._postCache(); - } - // discard entry if an error occurs, but warn if level set to do so - } catch (err) { - self._emitToConsole("warn", "MetricsLogger", [ - "Metrics logger could not stringify logArguments:", - namespace, - logArguments, - ]); - self._emitToConsole("error", "MetricsLogger", [err]); - } - return self; -}; - -/** build a log cache entry object from the given level, namespace, and arguments (optionally adding timestamp */ -MetricsLogger.prototype._buildEntry = function _buildEntry(level, namespace, logArguments) { - this._emitToConsole("debug", "MetricsLogger", ["_buildEntry:", arguments]); - var entry = { - level: level, - namespace: this.options.clientPrefix + namespace, - args: logArguments, - }; - if (this.options.addTime) { - entry.time = new Date().toISOString(); - } - return entry; -}; - -/** post _postSize messages from the cache to the server, removing them if successful - * if the post fails, wait until maxCacheSize is accumulated instead and try again then - * in addition to the messages from the cache ('metrics'), any info from getPingData (if set) will be sent - * onServerResponse will be called (if set) with any response from the server - */ -MetricsLogger.prototype._postCache = function _postCache(options) { - options = options || {}; - this._emitToConsole("info", "MetricsLogger", ["_postCache", options, this._postSize]); - - // short circuit if we're already sending - if (!this.options.postUrl || this._sending) { - return jQuery.when({}); - } - - var self = this; - var postSize = options.count || self._postSize; - - var // do not splice - remove after *successful* post - entries = self.cache.get(postSize); - - var entriesLength = entries.length; - - var // use the optional getPingData to add any extra info we may want to send - postData = typeof self.options.getPingData === "function" ? self.options.getPingData() : {}; - - //console.debug( postSize, entriesLength ); - - // add the metrics and send - postData.metrics = JSON.stringify(entries); - //console.debug( postData.metrics ); - self._sending = true; - return jQuery - .post(self.options.postUrl, postData) - .always(() => { - self._sending = false; - }) - .fail((xhr, status, message) => { - // if we failed the previous time, set the next post target to the max num of entries - self._postSize = self.options.maxCacheSize; - //TODO:?? - // log this failure to explain any gap in metrics - self.emit("error", "MetricsLogger", [ - "_postCache error:", - xhr.readyState, - xhr.status, - xhr.responseJSON || xhr.responseText, - ]); - //TODO: still doesn't solve the problem that when cache == max, post will be tried on every emit - //TODO: see _delayPost - }) - .done((response) => { - if (typeof self.options.onServerResponse === "function") { - self.options.onServerResponse(response); - } - // only remove if post successful - self.cache.remove(entriesLength); - //console.debug( 'removed entries:', entriesLength, 'size now:', self.cache.length() ); - // if we succeeded, reset the post target to the normal num of entries - self._postSize = self.options.postSize; - }); - // return the xhr promise -}; - -/** set _waiting to true and, after delayPostInMs, set it back to false */ -MetricsLogger.prototype._delayPost = function _delayPost() { - //TODO: this won't work between pages - var self = this; - self._waiting = window.setTimeout(() => { - self._waiting = null; - }, self.options.delayPostInMs); -}; - -function usefulToString(arg) { - var asStr = String(arg); - if (asStr == "[object Object]") { - try { - asStr = JSON.stringify(arg); - } catch (e) { - // If arg has cyclic reference, return String - // otherwise rendering stops and we have incomplete page - console.error(e); - return String(arg); - } - } - return asStr; -} - -//----------------------------------------------------------------------------- console -/** output message to console based on level and consoleLogger type */ -MetricsLogger.prototype._emitToConsole = function _emitToConsole(level, namespace, logArguments) { - //console.debug( '_emitToConsole:', level, namespace, logArguments ); - var self = this; - - var whitelist = self.options.consoleNamespaceWhitelist; - if (!self.consoleLogger) { - return self; - } - // if a whitelist for namespaces is set, bail if this namespace is not in the list - if (whitelist && whitelist.indexOf(namespace) === -1) { - return self; - } - - var args = Array.prototype.slice.call(logArguments, 0); - args.unshift(namespace); - if (self.options.consoleFlattenMessages) { - args = [args.map(usefulToString).join(" ")]; - } - //TODO: script location and/or source maps? - //TODO: branch on navigator.userAgent == AIIEEE - it only has log - if (level >= MetricsLogger.METRIC && typeof self.consoleLogger.info === "function") { - return self.consoleLogger.info.apply(self.consoleLogger, args); - } else if (level >= MetricsLogger.ERROR && typeof self.consoleLogger.error === "function") { - return self.consoleLogger.error.apply(self.consoleLogger, args); - } else if (level >= MetricsLogger.WARN && typeof self.consoleLogger.warn === "function") { - self.consoleLogger.warn.apply(self.consoleLogger, args); - } else if (level >= MetricsLogger.INFO && typeof self.consoleLogger.info === "function") { - self.consoleLogger.info.apply(self.consoleLogger, args); - } else if (level >= MetricsLogger.DEBUG && typeof self.consoleLogger.debug === "function") { - self.consoleLogger.debug.apply(self.consoleLogger, args); - } else if (typeof self.consoleLogger.log === "function") { - self.consoleLogger.log.apply(self.consoleLogger, args); - } - return self; -}; - -//----------------------------------------------------------------------------- shortcuts -// generic functions when logging from non-namespaced object (e.g. templates) -/** log to default namespace */ -MetricsLogger.prototype.log = function log() { - this.emit(1, this.options.defaultNamespace, Array.prototype.slice.call(arguments, 0)); -}; - -/** debug to default namespace */ -MetricsLogger.prototype.debug = function debug() { - this.emit(MetricsLogger.DEBUG, this.options.defaultNamespace, Array.prototype.slice.call(arguments, 0)); -}; - -/** info to default namespace */ -MetricsLogger.prototype.info = function info() { - this.emit(MetricsLogger.INFO, this.options.defaultNamespace, Array.prototype.slice.call(arguments, 0)); -}; - -/** warn to default namespace */ -MetricsLogger.prototype.warn = function warn() { - this.emit(MetricsLogger.WARN, this.options.defaultNamespace, Array.prototype.slice.call(arguments, 0)); -}; - -/** error to default namespace */ -MetricsLogger.prototype.error = function error() { - this.emit(MetricsLogger.ERROR, this.options.defaultNamespace, Array.prototype.slice.call(arguments, 0)); -}; - -/** metric to default namespace */ -MetricsLogger.prototype.metric = function metric() { - this.emit(MetricsLogger.METRIC, this.options.defaultNamespace, Array.prototype.slice.call(arguments, 0)); -}; - -/* ============================================================================ -TODO: - need a performance pass - the JSON un/parsing is a bit much - -============================================================================ */ -/** @class LoggingCache - * Simple implementation of cache wrapping an array. - * - * Formats an entry before it's cached and only keeps options.maxSize number - * of entries. Older entries are deleted first. - */ -function LoggingCache(options) { - var self = this; - return self._init(options || {}); -} - -/** default options */ -LoggingCache.defaultOptions = { - /** maximum number of entries to keep before discarding oldest */ - maxSize: 5000, -}; - -/** initialize with options */ -LoggingCache.prototype._init = function _init(options) { - if (!this._hasStorage()) { - //TODO: fall back to local storage - throw new Error("LoggingCache needs localStorage"); - } - if (!options.key) { - throw new Error("LoggingCache needs key for localStorage"); - } - this.key = options.key; - this._initStorage(); - - this.maxSize = options.maxSize || LoggingCache.defaultOptions.maxSize; - return this; -}; - -/** tests for localStorage fns */ -LoggingCache.prototype._hasStorage = function _hasStorage() { - //TODO: modernizr - var test = "test"; - try { - localStorage.setItem(test, test); - localStorage.removeItem(test); - return true; - } catch (e) { - return false; - } -}; - -/** if no localStorage set for key, initialize to empty array */ -LoggingCache.prototype._initStorage = function _initStorage() { - if (localStorage.getItem(this.key) === null) { - return this.empty(); - } - return this; -}; - -/** add an entry to the cache, removing the oldest beforehand if size >= maxSize */ -LoggingCache.prototype.add = function add(entry) { - var self = this; - var _cache = self._fetchAndParse(); - var overage = _cache.length + 1 - self.maxSize; - if (overage > 0) { - _cache.splice(0, overage); - } - _cache.push(entry); - self._unparseAndStore(_cache); - return _cache.length; -}; - -/** get the entries from localStorage and parse them */ -LoggingCache.prototype._fetchAndParse = function _fetchAndParse() { - var self = this; - return JSON.parse(localStorage.getItem(self.key)); -}; - -/** stringify the entries and put them in localStorage */ -LoggingCache.prototype._unparseAndStore = function _unparseAndStore(entries) { - var self = this; - return localStorage.setItem(self.key, JSON.stringify(entries)); -}; - -///** process the entry before caching */ -//LoggingCache.prototype._preprocessEntry = function _preprocessEntry( entry ){ -// return JSON.stringify( entry ); -//}; - -/** return the length --- oh, getters where are you? */ -LoggingCache.prototype.length = function length() { - return this._fetchAndParse().length; -}; - -/** get count number of entries starting with the oldest */ -LoggingCache.prototype.get = function get(count) { - return this._fetchAndParse().slice(0, count); -}; - -/** remove count number of entries starting with the oldest */ -LoggingCache.prototype.remove = function remove(count) { - var _cache = this._fetchAndParse(); - var removed = _cache.splice(0, count); - this._unparseAndStore(_cache); - return removed; -}; - -/** empty/clear the entire cache */ -LoggingCache.prototype.empty = function empty() { - localStorage.setItem(this.key, "[]"); - return this; -}; - -/** stringify count number of entries (but do not remove) */ -LoggingCache.prototype.stringify = function stringify(count) { - return JSON.stringify(this.get(count)); -}; - -/** outputs entire cache to console */ -LoggingCache.prototype.print = function print() { - // popup? (really, carl? a popup?) - easier to copy/paste - console.log(JSON.stringify(this._fetchAndParse(), null, " ")); -}; - -//============================================================================= -export default { - MetricsLogger: MetricsLogger, - LoggingCache: LoggingCache, -}; diff --git a/client/src/utils/utils.test.js b/client/src/utils/utils.test.js new file mode 100644 index 00000000000..eb2d10c9a0b --- /dev/null +++ b/client/src/utils/utils.test.js @@ -0,0 +1,17 @@ +import Utils from "./utils"; + +describe("test utils", () => { + it("test isEmpty", async () => { + expect(Utils.isEmpty([])).toBe(true); // "Empty array"); + expect(Utils.isEmpty(["data", undefined])).toBe(true); // , "Array contains `undefined`"); + expect(Utils.isEmpty(["data", null])).toBe(true); //, "Array contains `null`"); + expect(Utils.isEmpty(["data", "__null__"])).toBe(true); // , "Array contains `__null__`"); + expect(Utils.isEmpty(["data", "__undefined__"])).toBe(true); // , "Array contains `__undefined__`"); + expect(Utils.isEmpty(null)).toBe(true); //, "Array is null"); + expect(Utils.isEmpty("__null__")).toBe(true); //, "Array is __null__"); + expect(Utils.isEmpty("__undefined__")).toBe(true); //, "Array is __undefined__"); + expect(Utils.isEmpty(["data"])).toBe(false); //, "Array contains `data`"); + expect(Utils.isEmpty(1)).toBe(false); //, "Value is int"); + expect(Utils.isEmpty(0)).toBe(false); //, "Value is zero"); + }); +}); diff --git a/client/tests/jest/__mocks__/localization.js b/client/tests/jest/__mocks__/localization.js index c19346b6775..1c834c614b8 100644 --- a/client/tests/jest/__mocks__/localization.js +++ b/client/tests/jest/__mocks__/localization.js @@ -1,3 +1,11 @@ -export default (l) => { +export function _setUserLocale(user, config) { + sessionStorage.setItem("currentLocale", "en"); +} + +export function _getUserLocale(user, config) { + return "en"; +} + +export default function localize(l) { return l; -}; +} diff --git a/client/tests/jest/jest.config.js b/client/tests/jest/jest.config.js index 90d99bbb5dc..a4a84c4f3b6 100644 --- a/client/tests/jest/jest.config.js +++ b/client/tests/jest/jest.config.js @@ -39,6 +39,7 @@ module.exports = { roots: ["/src/", "/tests/jest/standalone/"], setupFilesAfterEnv: ["/tests/jest/jest.setup.js"], testEnvironment: "jsdom", + testPathIgnorePatterns: ["/node_modules/", "/dist/"], transform: { "^.+\\.js$": "babel-jest", "^.*\\.(vue)$": "@vue/vue2-jest", diff --git a/client/tests/karma/karma.config.base.js b/client/tests/karma/karma.config.base.js deleted file mode 100644 index 96e1427b8a2..00000000000 --- a/client/tests/karma/karma.config.base.js +++ /dev/null @@ -1,35 +0,0 @@ -/** - * Base karma config, assumes chrome headless and webpack - */ - -const webpackConfigFunc = require("./webpack.config.unittest"); - -module.exports = (config) => { - // Karma does not execute the webpack config function by default - const webpackConfig = webpackConfigFunc( - {}, - { - mode: "testing", - } - ); - - return { - basePath: "../../src", - browsers: ["ChromeHeadlessNoSandbox"], - client: { - captureConsole: true, - }, - failOnEmptyTestSuite: false, - singleRun: true, - webpack: webpackConfig, - webpackMiddleware: { - noInfo: true, - }, - customLaunchers: { - ChromeHeadlessNoSandbox: { - base: "ChromeHeadless", - flags: ["--no-sandbox"], - }, - }, - }; -}; diff --git a/client/tests/karma/karma.config.qunit.js b/client/tests/karma/karma.config.qunit.js deleted file mode 100644 index 2ad9bac073d..00000000000 --- a/client/tests/karma/karma.config.qunit.js +++ /dev/null @@ -1,30 +0,0 @@ -/** - * Qunit Tests - * - * These legacy QUnit tests are interdependent and only execute as a single - * package. A flaw in the previous node environment parameter-checking in the - * old karma configs gave the illusion that they ran individually, but they do - * not and probably never have. Keeping them around for now, but we should get - * rid of them by rewriting the tests or preferrably by removing the code to - * which they apply. - */ - -const baseKarmaConfig = require("./karma.config.base"); -const testFiles = ["polyfills.js", "../tests/qunit/testBundle.js"]; -const preprocessors = testFiles.reduce((result, path) => { - result[path] = ["webpack"]; - return result; -}, {}); - -module.exports = function (config) { - const baseConfig = baseKarmaConfig(config); - - const settings = Object.assign({}, baseConfig, { - files: testFiles, - preprocessors: preprocessors, - frameworks: ["polyfill", "qunit"], - singleRun: true, - }); - - config.set(settings); -}; diff --git a/client/tests/karma/webpack.config.qunit.js b/client/tests/karma/webpack.config.qunit.js deleted file mode 100644 index 49e559ea620..00000000000 --- a/client/tests/karma/webpack.config.qunit.js +++ /dev/null @@ -1,46 +0,0 @@ -/** - * So the legacy QUnit tests have to perform some gymastics that should not be - * required because thse tests apparently care about assets like the CSS and images. - * TODO: Replace these tests with like... actual unit tests. - */ - -const baseConfig = require("../../webpack.config"); - -module.exports = (env, argv) => { - // load base config - const wpConfig = baseConfig(env, argv); - wpConfig.mode = "production"; - wpConfig.entry = () => ({}); - - const switchPlugin = (reMatcher, replacement) => { - const scrubLoader = (obj) => - typeof obj == "string" && obj.match(reMatcher) ? Object.assign({}, replacement) : obj; - - return (rule) => { - if (rule.use && rule.use.length) { - rule.use = rule.use.map(scrubLoader); - } - return rule; - }; - }; - - // Remove MiniCssExtractPlugin loader references - // replace mini-css-extract plugin with basic style loader - // Honestly I'm not clear on why we process css at all for unit tests - const scrubLoaderRules = (module) => { - const rePluginMatch = /mini-css-extract-plugin/; - const styleLoader = { loader: "style-loader" }; - const processor = switchPlugin(rePluginMatch, styleLoader); - module.rules = module.rules.map(processor); - }; - - // Remove mini-css-extract loader references - scrubLoaderRules(wpConfig.module); - - // remove MiniCSSExtract Plugin - wpConfig.plugins = wpConfig.plugins.filter((p) => { - return p.constructor.name != "MiniCssExtractPlugin"; - }); - - return wpConfig; -}; diff --git a/client/tests/karma/webpack.config.unittest.js b/client/tests/karma/webpack.config.unittest.js deleted file mode 100644 index e08877fcb18..00000000000 --- a/client/tests/karma/webpack.config.unittest.js +++ /dev/null @@ -1,35 +0,0 @@ -/** - * Unit tests should not require css or images, so replace all those things with - * the ignore-loader for speedier testing. - */ - -const merge = require("webpack-merge"); -const baseConfig = require("../../webpack.config"); - -module.exports = (env, argv) => { - const wpConfig = baseConfig(env, argv); - wpConfig.mode = "development"; - wpConfig.entry = () => ({}); - - // Don't need any assets for unit testing - const ignoreAssetLoaders = { - rules: [ - { - test: /\.(png|jpg|jpeg|gif|svg|woff|woff2|ttf|eot)(\?.*$|$)/, - loader: "ignore-loader", - }, - { - test: /\.css$/, - loader: "ignore-loader", - }, - { - test: /\.scss$/, - loader: "ignore-loader", - }, - ], - }; - - wpConfig.module = merge.merge(wpConfig.module, ignoreAssetLoaders); - - return wpConfig; -}; diff --git a/client/tests/qunit/test-app.js b/client/tests/qunit/test-app.js deleted file mode 100644 index bf7ebe36332..00000000000 --- a/client/tests/qunit/test-app.js +++ /dev/null @@ -1,51 +0,0 @@ -/** Creates a generic/global Galaxy environment, loads shared libraries and a - * fake server */ - -// jQuery.fn.tooltip lives on one of these 2 libs -import "bootstrap"; - -import sinon from "sinon"; -import Backbone from "backbone"; -import { setGalaxyInstance } from "app"; -import { getAppRoot } from "onload"; -import galaxyOptions from "./test-data/bootstrapped"; -import serverdata from "./test-data/fakeserver"; - -export function setupTestGalaxy(galaxyOptions_ = null) { - galaxyOptions_ = galaxyOptions_ || galaxyOptions; - setGalaxyInstance((GalaxyApp) => { - const galaxy = new GalaxyApp(galaxyOptions_); - galaxy.currHistoryPanel = { - model: new Backbone.Model(), - }; - galaxy.emit = { - debug: function () {}, - error: function (v) { - window.console.error(v); - }, - }; - return galaxy; - }); -} - -export default { - create() { - setupTestGalaxy(galaxyOptions); - window.WAIT_FADE = 300; - window.fakeserver = sinon.fakeServer.create(); - for (var route in serverdata) { - window.fakeserver.respondWith("GET", getAppRoot() + route, [ - 200, - { "Content-Type": "application/json" }, - serverdata[route].data, - ]); - } - }, - - destroy() { - if (window.fakeserver) { - window.fakeserver.restore(); - delete window.fakeserver; - } - }, -}; diff --git a/client/tests/qunit/test-data/fakeserver.js b/client/tests/qunit/test-data/fakeserver.js deleted file mode 100644 index 684e643ae42..00000000000 --- a/client/tests/qunit/test-data/fakeserver.js +++ /dev/null @@ -1,11 +0,0 @@ -import dataTypesMapping from "./json/datatypes.mapping.json"; -import dataTypes from "./json/datatypes.json"; - -export default { - "api/datatypes/mapping": { - data: JSON.stringify(dataTypesMapping), - }, - "api/datatypes": { - data: JSON.stringify(dataTypes), - }, -}; diff --git a/client/tests/qunit/test-data/job-dag-1.js b/client/tests/qunit/test-data/job-dag-1.js deleted file mode 100644 index f2a6596eded..00000000000 --- a/client/tests/qunit/test-data/job-dag-1.js +++ /dev/null @@ -1,529 +0,0 @@ -// ============================================================================ -var tools = { - upload1: {}, - "Show beginning1": {}, - "Show tail1": {}, - random_lines1: {}, - __SET_METADATA__: {}, - cat1: {}, -}; - -// ============================================================================ -// plain 3 step job chain -var jobs1 = [ - { - tool_id: "upload1", - update_time: "2014-10-03T15:12:25.904033", - inputs: {}, - outputs: { - output0: { - src: "hda", - id: "8c959c9304a2bc4b", - }, - }, - exit_code: 0, - state: "ok", - create_time: "2014-10-03T15:12:22.589152", - params: { - // ... - }, - model_class: "Job", - id: "8a81cf6f989c4467", - tool: null, - }, - { - tool_id: "Show beginning1", - update_time: "2014-10-03T15:14:04.328484", - inputs: { - input: { - src: "hda", - id: "8c959c9304a2bc4b", - }, - }, - outputs: { - out_file1: { - src: "hda", - id: "132016f833b57406", - }, - }, - exit_code: 0, - state: "ok", - create_time: "2014-10-03T15:14:01.060662", - params: { - // ... - }, - model_class: "Job", - id: "6505e875ddb66fd2", - tool: null, - }, - { - tool_id: "Show tail1", - update_time: "2014-10-03T15:14:21.596871", - inputs: { - input: { - src: "hda", - id: "132016f833b57406", - }, - }, - outputs: { - out_file1: { - src: "hda", - id: "846fb0a2a64137c0", - }, - }, - exit_code: 0, - state: "ok", - create_time: "2014-10-03T15:14:18.425681", - params: { - // ... - }, - model_class: "Job", - id: "77f74776fd03cbc5", - tool: null, - }, -]; - -var historyContents1 = [ - { - deleted: false, - extension: "interval", - hid: 1, - history_content_type: "dataset", - history_id: "911dde3ddb677bcd", - id: "8c959c9304a2bc4b", - name: "1.interval", - purged: false, - resubmitted: false, - state: "ok", - type: "file", - url: "/api/histories/911dde3ddb677bcd/contents/datasets/8c959c9304a2bc4b", - visible: true, - }, - { - deleted: false, - extension: "interval", - hid: 2, - history_content_type: "dataset", - history_id: "911dde3ddb677bcd", - id: "132016f833b57406", - name: "Select first on data 1", - purged: false, - resubmitted: false, - state: "ok", - type: "file", - url: "/api/histories/911dde3ddb677bcd/contents/datasets/132016f833b57406", - visible: true, - }, - { - deleted: false, - extension: "interval", - hid: 3, - history_content_type: "dataset", - history_id: "911dde3ddb677bcd", - id: "846fb0a2a64137c0", - name: "Select last on data 2", - purged: false, - resubmitted: false, - state: "ok", - type: "file", - url: "/api/histories/911dde3ddb677bcd/contents/datasets/846fb0a2a64137c0", - visible: true, - }, -]; - -// ============================================================================ -// single job chain with a __SET_METADATA__ job -var jobs2 = [ - { - tool_id: "upload1", - update_time: "2014-10-03T16:09:49.590769", - inputs: {}, - outputs: { - output0: { - src: "hda", - id: "eca0af6fb47bf90c", - }, - }, - exit_code: 0, - state: "ok", - create_time: "2014-10-03T16:09:45.190023", - params: { - // ... - }, - model_class: "Job", - id: "bf60fd5f5f7f44bf", - tool: null, - }, - { - tool_id: "random_lines1", - update_time: "2014-10-03T16:10:44.743610", - inputs: { - input: { - src: "hda", - id: "eca0af6fb47bf90c", - }, - }, - outputs: { - out_file1: { - src: "hda", - id: "6fc9fbb81c497f69", - }, - }, - exit_code: 0, - state: "ok", - create_time: "2014-10-03T16:10:41.446413", - params: { - // ... - }, - model_class: "Job", - id: "90240358ebde1489", - tool: null, - }, - { - tool_id: "__SET_METADATA__", - update_time: "2014-10-03T16:14:44.196697", - inputs: { - input1: { - src: "hda", - id: "eca0af6fb47bf90c", - }, - }, - outputs: {}, - exit_code: 0, - state: "ok", - create_time: "2014-10-03T16:14:37.901222", - params: { - // ... - }, - model_class: "Job", - id: "86cf1d3beeec9f1c", - tool: null, - }, -]; - -var historyContents2 = [ - { - deleted: false, - extension: "interval", - hid: 1, - history_content_type: "dataset", - history_id: "ff5476bcf6c921fa", - id: "eca0af6fb47bf90c", - name: "1.interval", - purged: false, - resubmitted: false, - state: "ok", - type: "file", - url: "/api/histories/ff5476bcf6c921fa/contents/datasets/eca0af6fb47bf90c", - visible: true, - }, - { - deleted: false, - extension: "interval", - hid: 2, - history_content_type: "dataset", - history_id: "ff5476bcf6c921fa", - id: "6fc9fbb81c497f69", - name: "Select random lines on data 1", - purged: false, - resubmitted: false, - state: "ok", - type: "file", - url: "/api/histories/ff5476bcf6c921fa/contents/datasets/6fc9fbb81c497f69", - visible: true, - }, -]; - -var jobs3 = [ - { - tool_id: "upload1", - update_time: "2014-10-13T20:28:58.549844", - inputs: {}, - outputs: { - output0: { - src: "hda", - id: "6fb17d0cc6e8fae5", - }, - }, - exit_code: 0, - state: "ok", - create_time: "2014-10-13T20:28:43.162803", - params: { - // ... - }, - model_class: "Job", - id: "8c959c9304a2bc4b", - tool: null, - }, - { - tool_id: "upload1", - update_time: "2014-10-13T20:28:58.932152", - inputs: {}, - outputs: { - output0: { - src: "hda", - id: "5114a2a207b7caff", - }, - }, - exit_code: 0, - state: "ok", - create_time: "2014-10-13T20:28:47.421452", - params: { - // ... - }, - model_class: "Job", - id: "132016f833b57406", - tool: null, - }, - { - tool_id: "Show beginning1", - update_time: "2014-10-13T20:29:31.424058", - inputs: { - input: { - src: "hda", - id: "6fb17d0cc6e8fae5", - }, - }, - outputs: { - out_file1: { - src: "hda", - id: "06ec17aefa2d49dd", - }, - }, - exit_code: 0, - state: "ok", - create_time: "2014-10-13T20:29:28.769495", - params: { - // ... - }, - model_class: "Job", - id: "846fb0a2a64137c0", - tool: null, - }, - { - tool_id: "Show beginning1", - update_time: "2014-10-13T20:29:55.851096", - inputs: { - input: { - src: "hda", - id: "5114a2a207b7caff", - }, - }, - outputs: { - out_file1: { - src: "hda", - id: "b8a0d6158b9961df", - }, - }, - exit_code: 0, - state: "ok", - create_time: "2014-10-13T20:29:53.291703", - params: { - // ... - }, - model_class: "Job", - id: "eca0af6fb47bf90c", - tool: null, - }, - { - tool_id: "Show tail1", - update_time: "2014-10-13T20:30:16.225937", - inputs: { - input: { - src: "hda", - id: "b8a0d6158b9961df", - }, - }, - outputs: { - out_file1: { - src: "hda", - id: "24d84bcf64116fe7", - }, - }, - exit_code: 0, - state: "ok", - create_time: "2014-10-13T20:30:13.789842", - params: { - // ... - }, - model_class: "Job", - id: "6fc9fbb81c497f69", - tool: null, - }, -]; - -var historyContents3 = [ - { - deleted: false, - extension: "bed", - hid: 1, - history_content_type: "dataset", - history_id: "5564089c81cf7fe8", - id: "6fb17d0cc6e8fae5", - name: "1.bed", - purged: false, - resubmitted: false, - state: "ok", - type: "file", - url: "/api/histories/5564089c81cf7fe8/contents/datasets/6fb17d0cc6e8fae5", - visible: true, - }, - { - deleted: false, - extension: "interval", - hid: 2, - history_content_type: "dataset", - history_id: "5564089c81cf7fe8", - id: "5114a2a207b7caff", - name: "1.interval", - purged: false, - resubmitted: false, - state: "ok", - type: "file", - url: "/api/histories/5564089c81cf7fe8/contents/datasets/5114a2a207b7caff", - visible: true, - }, - { - deleted: false, - extension: "bed", - hid: 3, - history_content_type: "dataset", - history_id: "5564089c81cf7fe8", - id: "06ec17aefa2d49dd", - name: "Select first on data 1", - purged: false, - resubmitted: false, - state: "ok", - type: "file", - url: "/api/histories/5564089c81cf7fe8/contents/datasets/06ec17aefa2d49dd", - visible: true, - }, - { - deleted: false, - extension: "interval", - hid: 4, - history_content_type: "dataset", - history_id: "5564089c81cf7fe8", - id: "b8a0d6158b9961df", - name: "Select first on data 2", - purged: false, - resubmitted: false, - state: "ok", - type: "file", - url: "/api/histories/5564089c81cf7fe8/contents/datasets/b8a0d6158b9961df", - visible: true, - }, - { - deleted: false, - extension: "interval", - hid: 5, - history_content_type: "dataset", - history_id: "5564089c81cf7fe8", - id: "24d84bcf64116fe7", - name: "Select last on data 4", - purged: false, - resubmitted: false, - state: "ok", - type: "file", - url: "/api/histories/5564089c81cf7fe8/contents/datasets/24d84bcf64116fe7", - visible: true, - }, -]; - -var jobs4 = [ - { - tool_id: "cat1", - update_time: "2014-10-21T17:33:36.960857", - inputs: { - input1: { - src: "hda", - id: "422eef6b1b545329", - name: "input1", - }, - "queries_0|input2": { - src: "hda", - id: "c86c1b73aa7102dd", - name: "queries_0|input2", - }, - }, - outputs: { - out_file1: { - src: "hda", - id: "52d6bdfafedbb5e5", - name: "out_file1", - }, - }, - exit_code: 0, - state: "ok", - create_time: "2014-10-21T17:33:34.302245", - params: { - // ... - }, - model_class: "Job", - id: "92b83968e0b52980", - }, -]; - -var historyContents4 = [ - { - dataset_id: 29, - deleted: false, - extension: "vcf", - hid: 1, - history_content_type: "dataset", - history_id: "c24141d7e4e77705", - id: "422eef6b1b545329", - name: "1.vcf", - purged: false, - resubmitted: false, - state: "ok", - type: "file", - url: "/api/histories/c24141d7e4e77705/contents/datasets/422eef6b1b545329", - visible: true, - }, - { - dataset_id: 56, - deleted: false, - extension: "maf", - hid: 2, - history_content_type: "dataset", - history_id: "c24141d7e4e77705", - id: "c86c1b73aa7102dd", - name: "3.maf", - purged: false, - resubmitted: false, - state: "ok", - type: "file", - url: "/api/histories/c24141d7e4e77705/contents/datasets/c86c1b73aa7102dd", - visible: true, - }, - { - dataset_id: 131, - deleted: false, - extension: "maf", - hid: 3, - history_content_type: "dataset", - history_id: "c24141d7e4e77705", - id: "52d6bdfafedbb5e5", - name: "Concatenate datasets on data 1 and data 2", - purged: false, - resubmitted: false, - state: "ok", - type: "file", - url: "/api/histories/c24141d7e4e77705/contents/datasets/52d6bdfafedbb5e5", - visible: true, - }, -]; - -// ============================================================================ -export default { - tools: tools, - jobs1: jobs1, - historyContents1: historyContents1, - jobs2: jobs2, - historyContents2: historyContents2, - jobs3: jobs3, - historyContents3: historyContents3, - jobs4: jobs4, - historyContents4: historyContents4, -}; diff --git a/client/tests/qunit/testBundle.js b/client/tests/qunit/testBundle.js deleted file mode 100644 index 2286b30def8..00000000000 --- a/client/tests/qunit/testBundle.js +++ /dev/null @@ -1,11 +0,0 @@ -// Load all qunit tests into a single bundle. -//var testsContext = require.context(".", true, /_tests$/); -//testsContext.keys().forEach(testsContext); - -import "./tests/galaxy_app_base_tests"; -import "./tests/jquery_plugin_tests"; -import "./tests/metrics_logger_tests"; -import "./tests/graph_tests"; -import "./tests/modal_tests"; -import "./tests/utils_tests"; -import "./tests/ui_tests"; diff --git a/client/tests/qunit/tests/galaxy_app_base_tests.js b/client/tests/qunit/tests/galaxy_app_base_tests.js deleted file mode 100644 index 0d18449f594..00000000000 --- a/client/tests/qunit/tests/galaxy_app_base_tests.js +++ /dev/null @@ -1,76 +0,0 @@ -/* global QUnit */ -import testApp from "../test-app"; -import { getGalaxyInstance, setGalaxyInstance } from "app"; - -QUnit.module("Galaxy client app tests", { - beforeEach: function () { - testApp.create(); - }, - afterEach: function () { - testApp.destroy(); - }, -}); - -QUnit.test("App base construction/initializiation defaults", function (assert) { - var app = getGalaxyInstance(); - assert.ok(app.hasOwnProperty("options") && typeof app.options === "object"); - assert.ok(app.hasOwnProperty("logger") && typeof app.logger === "object"); - assert.ok(app.hasOwnProperty("localize") && typeof app.localize === "function"); - assert.ok(app.hasOwnProperty("config") && typeof app.config === "object"); - assert.ok(app.hasOwnProperty("user") && typeof app.config === "object"); - assert.equal(app.localize, window._l); -}); - -QUnit.test("App base default options", function (assert) { - var app = getGalaxyInstance(); - assert.ok(app.hasOwnProperty("options") && typeof app.options === "object"); - assert.equal(app.options.root, "/"); - assert.equal(app.options.patchExisting, true); -}); - -QUnit.test("App base extends from Backbone.Events", function (assert) { - var app = getGalaxyInstance(); - ["on", "off", "trigger", "listenTo", "stopListening"].forEach(function (fn) { - assert.ok(app.hasOwnProperty(fn) && typeof app[fn] === "function"); - }); -}); - -QUnit.test("App base has logging methods from utils/add-logging.js", function (assert) { - var app = getGalaxyInstance(); - ["debug", "info", "warn", "error", "metric"].forEach(function (fn) { - assert.ok(typeof app[fn] === "function"); - }); - assert.ok(app._logNamespace === "GalaxyApp"); -}); - -// We no longer want this behavior -QUnit.test("App base will patch in attributes from existing Galaxy objects", function (assert) { - var existingApp = getGalaxyInstance(); - existingApp.foo = 123; - - var newApp = setGalaxyInstance((GalaxyApp) => { - return new GalaxyApp(); - }); - - assert.ok(newApp.foo === 123); -}); - -QUnit.test("App base logger", function (assert) { - var app = getGalaxyInstance(); - assert.ok(app.hasOwnProperty("logger") && typeof app.config === "object"); -}); - -QUnit.test("App base config", function (assert) { - var app = getGalaxyInstance(); - assert.ok(app.hasOwnProperty("config") && typeof app.config === "object"); - assert.equal(app.config.allow_user_deletion, false); - assert.equal(app.config.allow_user_creation, true); - assert.equal(app.config.wiki_url, "https://galaxyproject.org/"); - assert.equal(app.config.ftp_upload_site, null); -}); - -QUnit.test("App base user", function (assert) { - var app = getGalaxyInstance(); - assert.ok(app.hasOwnProperty("user") && typeof app.user === "object"); - assert.ok(app.user.isAdmin() === false); -}); diff --git a/client/tests/qunit/tests/graph_tests.js b/client/tests/qunit/tests/graph_tests.js deleted file mode 100644 index 19e945d9a6b..00000000000 --- a/client/tests/qunit/tests/graph_tests.js +++ /dev/null @@ -1,563 +0,0 @@ -/* global QUnit */ -import testApp from "../test-app"; -import GRAPH from "utils/graph"; - -QUnit.module("utils/graph.js library tests", { - beforeEach: function () { - testApp.create(); - }, - afterEach: function () { - testApp.destroy(); - }, -}); - -///* -function testEmptyObject(assert, o) { - assert.ok(typeof o === "object"); - assert.ok(Object.keys(o).length === 0); -} - -// ------------------------------------------------------------------------ vertices -QUnit.test("Empty vertex construction", function (assert) { - var vert = new GRAPH.Vertex(); - assert.ok(vert instanceof GRAPH.Vertex); - assert.ok(vert.name === "(unnamed)"); - assert.ok(vert.data === null); - testEmptyObject(assert, vert.edges); - assert.ok(vert.degree === 0); - assert.ok(vert + "" === "Vertex((unnamed))"); - assert.deepEqual(vert.toJSON(), { name: "(unnamed)", data: null }); -}); - -QUnit.test("Vertex construction", function (assert) { - var vert = new GRAPH.Vertex("blah", { blorp: 1, bleep: 2 }); - assert.ok(vert instanceof GRAPH.Vertex); - assert.ok(vert.name === "blah"); - assert.deepEqual(vert.data, { blorp: 1, bleep: 2 }); - testEmptyObject(assert, vert.edges); - assert.ok(vert.degree === 0); - assert.ok(vert + "" === "Vertex(blah)"); - assert.deepEqual(vert.toJSON(), { name: "blah", data: { blorp: 1, bleep: 2 } }); -}); - -// ------------------------------------------------------------------------ edges -QUnit.test("Empty edge construction", function (assert) { - var edge = new GRAPH.Edge(); - assert.ok(edge instanceof GRAPH.Edge); - assert.ok(edge.source === null); - assert.ok(edge.target === null); - assert.ok(edge.data === null); - assert.ok(edge + "" === "null->null"); - assert.deepEqual(edge.toJSON(), { source: null, target: null }); -}); - -QUnit.test("Edge construction", function (assert) { - var edge = new GRAPH.Edge("A", "B", { one: 1, two: 2 }); - assert.ok(edge instanceof GRAPH.Edge); - assert.ok(edge.source === "A"); - assert.ok(edge.target === "B"); - assert.deepEqual(edge.data, { one: 1, two: 2 }); - assert.ok(edge + "" === "A->B"); - assert.deepEqual(edge.toJSON(), { source: "A", target: "B", data: { one: 1, two: 2 } }); -}); - -// ------------------------------------------------------------------------ graphs -function testEmptyGraph(assert, graph) { - assert.ok(graph instanceof GRAPH.Graph); - testEmptyObject(assert, graph.vertices); - assert.ok(graph.numEdges === 0); -} - -QUnit.test("Empty graph construction", function (assert) { - var graph = new GRAPH.Graph(); - - assert.ok(graph.directed === false); - assert.ok(graph.allowReflexiveEdges === false); - - testEmptyGraph(assert, graph); -}); - -QUnit.test("Bad data graph construction", function (assert) { - var graph = new GRAPH.Graph(false, {}); - testEmptyGraph(assert, graph); - - graph = new GRAPH.Graph(false, null); - testEmptyGraph(assert, graph); -}); - -QUnit.test("Test directed and options", function (assert) { - var graph = new GRAPH.Graph(true, {}, { allowReflexiveEdges: true }); - - assert.ok(graph.directed); - assert.ok(graph.allowReflexiveEdges); - - testEmptyGraph(assert, graph); -}); - -function testSampleDirectedGraph(assert, graph) { - assert.ok(!graph.directed); - - assert.ok(Object.keys(graph.vertices).length === 3); - assert.ok(graph.vertices.A instanceof GRAPH.Vertex); - assert.ok(graph.vertices.B instanceof GRAPH.Vertex); - assert.ok(graph.vertices.C instanceof GRAPH.Vertex); - - assert.deepEqual(Object.keys(graph.vertices.A.edges), ["B", "C"]); - assert.deepEqual(Object.keys(graph.vertices.B.edges), ["A", "C"]); - assert.deepEqual(Object.keys(graph.vertices.C.edges), ["A", "B"]); - - assert.ok(graph.vertices.A.degree === 2); - assert.ok(graph.vertices.B.degree === 2); - assert.ok(graph.vertices.C.degree === 2); - - assert.deepEqual(graph.vertices.A.edges.B.toJSON(), { source: "A", target: "B" }); - assert.deepEqual(graph.vertices.A.edges.C.toJSON(), { source: "A", target: "C" }); - assert.deepEqual(graph.vertices.B.edges.A.toJSON(), { source: "B", target: "A" }); - assert.deepEqual(graph.vertices.B.edges.C.toJSON(), { source: "B", target: "C" }); - assert.deepEqual(graph.vertices.C.edges.A.toJSON(), { source: "C", target: "A" }); - assert.deepEqual(graph.vertices.C.edges.B.toJSON(), { source: "C", target: "B" }); - - assert.ok(graph.numEdges === 6); -} - -function testSampleNonDirectedGraph(assert, graph) { - assert.ok(graph.directed); - - assert.ok(Object.keys(graph.vertices).length === 3); - assert.ok(graph.vertices.A instanceof GRAPH.Vertex); - assert.ok(graph.vertices.B instanceof GRAPH.Vertex); - assert.ok(graph.vertices.C instanceof GRAPH.Vertex); - - assert.deepEqual(Object.keys(graph.vertices.A.edges), ["B", "C"]); - assert.deepEqual(Object.keys(graph.vertices.B.edges), ["C"]); - assert.deepEqual(Object.keys(graph.vertices.C.edges), []); - - assert.ok(graph.vertices.A.degree === 2); - assert.ok(graph.vertices.B.degree === 1); - assert.ok(graph.vertices.C.degree === 0); - - assert.deepEqual(graph.vertices.A.edges.B.toJSON(), { source: "A", target: "B" }); - assert.deepEqual(graph.vertices.A.edges.C.toJSON(), { source: "A", target: "C" }); - assert.deepEqual(graph.vertices.B.edges.C.toJSON(), { source: "B", target: "C" }); - - assert.ok(graph.numEdges === 3); -} - -var nodeLinkData = { - nodes: [ - { name: "A", data: 100 }, - { name: "B", data: 200 }, - { name: "C", data: 300 }, - ], - links: [ - { source: 0, target: 1 }, - { source: 0, target: 2 }, - { source: 1, target: 2 }, - ], -}; - -QUnit.test("Test nodes and links data input on *non-directed* graph", function (assert) { - var graph = new GRAPH.Graph(false, nodeLinkData); - testSampleDirectedGraph(assert, graph); -}); - -QUnit.test("Test nodes and links data input on *directed* graph", function (assert) { - var graph = new GRAPH.Graph(true, nodeLinkData); - testSampleNonDirectedGraph(assert, graph); -}); - -var vertexEdgeData = { - vertices: [ - { name: "A", data: 100 }, - { name: "B", data: 200 }, - { name: "C", data: 300 }, - ], - edges: [ - { source: "A", target: "B" }, - { source: "A", target: "C" }, - { source: "B", target: "C" }, - ], -}; - -QUnit.test("Test vertex and edge data input on *non-directed* graph", function (assert) { - var graph = new GRAPH.Graph(false, vertexEdgeData); - testSampleDirectedGraph(assert, graph); -}); - -QUnit.test("Test vertex and edge data input on *directed* graph", function (assert) { - var graph = new GRAPH.Graph(true, vertexEdgeData); - testSampleNonDirectedGraph(assert, graph); -}); - -QUnit.test("Test vertex eachEdge", function (assert) { - var graph = new GRAPH.Graph(false, nodeLinkData); - assert.ok(typeof graph.vertices.A.eachEdge === "function"); - assert.deepEqual( - graph.vertices.A.eachEdge(function (e) { - return e.target; - }), - ["B", "C"] - ); - assert.ok(graph.vertices.A.eachEdge({ target: "B" }).length === 1); -}); - -QUnit.test("Test graph eachVertex", function (assert) { - var graph = new GRAPH.Graph(true, nodeLinkData); - assert.ok(typeof graph.eachVertex === "function"); - assert.deepEqual( - graph.eachVertex(function (v) { - return { n: v.name, d: v.degree }; - }), - [ - { n: "A", d: 2 }, - { n: "B", d: 1 }, - { n: "C", d: 0 }, - ] - ); - assert.ok(graph.eachVertex({ degree: 2 })[0] === graph.vertices.A); -}); - -QUnit.test("Test createVertex", function (assert) { - var graph = new GRAPH.Graph(); - var vert1 = graph.createVertex("A", { blah: 1 }); - assert.ok(vert1 instanceof GRAPH.Vertex); - assert.ok(vert1 === graph.vertices.A); - assert.ok(graph.createVertex("A", { blah: 1 }) === vert1); -}); - -QUnit.test("Test createEdge", function (assert) { - var graph, A, B, edge; - - graph = new GRAPH.Graph(); - A = graph.createVertex("A"); - B = graph.createVertex("B"); - edge = graph.createEdge("A", "B"); - assert.ok(edge instanceof GRAPH.Edge); - assert.ok(A.degree === 1); - assert.ok(B.degree === 1); - assert.ok(A.edges.B); - assert.ok(B.edges.A); - assert.ok(graph.numEdges === 2); - - // bad target - graph = new GRAPH.Graph(); - A = graph.createVertex("A"); - B = graph.createVertex("B"); - edge = graph.createEdge("A", "C"); - assert.ok(edge === null); - assert.ok(A.degree === 0); - assert.ok(B.degree === 0); - assert.ok(!A.edges.B); - assert.ok(!B.edges.A); - assert.ok(graph.numEdges === 0); - - // bad source - graph = new GRAPH.Graph(); - A = graph.createVertex("A"); - B = graph.createVertex("B"); - edge = graph.createEdge("C", "A"); - assert.ok(graph.numEdges === 0); - - // reflexive - graph = new GRAPH.Graph(); - A = graph.createVertex("A"); - B = graph.createVertex("B"); - edge = graph.createEdge("A", "A"); - assert.ok(graph.numEdges === 0); - - // reflexive (allowed) - graph = new GRAPH.Graph(false, {}, { allowReflexiveEdges: true }); - A = graph.createVertex("A"); - edge = graph.createEdge("A", "A"); - // reflexive edges shouldn't mirror - assert.ok(graph.numEdges === 1); - assert.ok(A.edges.A); -}); - -QUnit.test("Test graph.edges", function (assert) { - var graph = new GRAPH.Graph(false, nodeLinkData); - assert.ok(graph.edges().length === 6); - assert.deepEqual( - graph.edges(function (e) { - return e.source; - }), - ["A", "A", "B", "B", "C", "C"] - ); - assert.deepEqual(graph.edges({ source: "A" }), [graph.vertices.A.edges.B, graph.vertices.A.edges.C]); - - graph = new GRAPH.Graph(true, nodeLinkData); - assert.ok(graph.edges().length === 3); - assert.deepEqual( - graph.edges(function (e) { - return e.source; - }), - ["A", "A", "B"] - ); - assert.deepEqual(graph.edges({ source: "A" }), [graph.vertices.A.edges.B, graph.vertices.A.edges.C]); -}); - -QUnit.test("Test graph.adjacent", function (assert) { - var graph = new GRAPH.Graph(true, nodeLinkData); - assert.deepEqual(graph.adjacent(graph.vertices.A), [graph.vertices.B, graph.vertices.C]); - assert.deepEqual(graph.adjacent(graph.vertices.B), [graph.vertices.C]); - assert.deepEqual(graph.adjacent(graph.vertices.C), []); -}); - -QUnit.test("Test graph.eachAdjacent", function (assert) { - var graph = new GRAPH.Graph(true, nodeLinkData); - assert.deepEqual( - graph.eachAdjacent(graph.vertices.A, function (v, e) { - return v; - }), - [graph.vertices.B, graph.vertices.C] - ); -}); - -// ------------------------------------------------------------------------ breadth first search -QUnit.test("Empty BreadthFirstSearch", function (assert) { - var search = new GRAPH.BreadthFirstSearch(); - assert.ok(search instanceof GRAPH.BreadthFirstSearch); - assert.ok(search.graph === undefined); - assert.ok(typeof search.processFns === "object"); - assert.ok(typeof search.processFns.vertexEarly === "function"); - assert.ok(typeof search.processFns.edge === "function"); - assert.ok(typeof search.processFns.vertexLate === "function"); - assert.ok(typeof search._cache === "object"); -}); - -QUnit.test("BreadthFirstSearch on undirected graph", function (assert) { - var graph = new GRAPH.Graph(false, nodeLinkData), - bfs = new GRAPH.BreadthFirstSearch(graph); - assert.ok(bfs instanceof GRAPH.BreadthFirstSearch); - assert.ok(bfs.graph === graph); - - var search = bfs.search("A"), - tree = bfs.searchTree("A"); - assert.deepEqual(search, { - discovered: { A: true, B: true, C: true }, - edges: [ - { source: "A", target: "B" }, - { source: "A", target: "C" }, - ], - }); - assert.ok(tree instanceof GRAPH.Graph); - assert.deepEqual(tree.vertices.A.toJSON(), graph.vertices.A.toJSON()); - assert.deepEqual( - tree.eachVertex(function (v) { - return v.degree; - }), - [2, 0, 0] - ); - - assert.deepEqual(bfs.search("B").edges, [ - { source: "B", target: "A" }, - { source: "B", target: "C" }, - ]); - assert.deepEqual(bfs.search("C").edges, [ - { source: "C", target: "A" }, - { source: "C", target: "B" }, - ]); - assert.ok(typeof bfs._cache.A === "object"); - assert.deepEqual(Object.keys(bfs._cache), ["A", "B", "C"]); -}); - -QUnit.test("BreadthFirstSearch on directed graph", function (assert) { - var graph = new GRAPH.Graph(true, nodeLinkData), - bfs = new GRAPH.BreadthFirstSearch(graph); - assert.ok(bfs instanceof GRAPH.BreadthFirstSearch); - assert.ok(bfs.graph === graph); - - var search = bfs.search("A"), - tree = bfs.searchTree("A"); - assert.deepEqual(search, { - discovered: { A: true, B: true, C: true }, - edges: [ - { source: "A", target: "B" }, - { source: "A", target: "C" }, - ], - }); - assert.ok(tree instanceof GRAPH.Graph); - assert.deepEqual(tree.vertices.A.toJSON(), graph.vertices.A.toJSON()); - assert.deepEqual( - tree.eachVertex(function (v) { - return v.degree; - }), - [2, 0, 0] - ); - - assert.deepEqual(bfs.search("B").edges, [{ source: "B", target: "C" }]); - assert.deepEqual(bfs.search("C").edges, []); - assert.ok(typeof bfs._cache.A === "object"); - assert.deepEqual(Object.keys(bfs._cache), ["A", "B", "C"]); -}); - -// ------------------------------------------------------------------------ depth first search -var DFSData = { - vertices: [{ name: "A" }, { name: "B" }, { name: "C" }, { name: "D" }, { name: "E" }, { name: "F" }], - edges: [ - { source: "A", target: "B" }, - { source: "B", target: "C" }, - // confound it - { source: "A", target: "C" }, - { source: "C", target: "D" }, - { source: "A", target: "E" }, - { source: "E", target: "F" }, - // confound it - { source: "F", target: "A" }, - ], -}; - -QUnit.test("Empty DepthFirstSearch", function (assert) { - var search = new GRAPH.DepthFirstSearch(); - assert.ok(search instanceof GRAPH.DepthFirstSearch); - assert.ok(search.graph === undefined); - assert.ok(typeof search.processFns === "object"); - assert.ok(typeof search.processFns.vertexEarly === "function"); - assert.ok(typeof search.processFns.edge === "function"); - assert.ok(typeof search.processFns.vertexLate === "function"); - assert.ok(typeof search._cache === "object"); -}); - -QUnit.test("DepthFirstSearch on undirected graph", function (assert) { - var graph = new GRAPH.Graph(false, DFSData), - dfs = new GRAPH.DepthFirstSearch(graph); - assert.ok(dfs instanceof GRAPH.DepthFirstSearch); - assert.ok(dfs.graph === graph); - - var search = dfs.search("A"), - tree = dfs.searchTree("A"); - assert.deepEqual(search, { - discovered: { A: true, B: true, C: true, D: true, E: true, F: true }, - edges: [ - { source: "A", target: "B" }, - { source: "B", target: "C" }, - { source: "C", target: "D" }, - { source: "A", target: "E" }, - { source: "E", target: "F" }, - ], - entryTimes: { A: 0, B: 1, C: 2, D: 3, E: 7, F: 8 }, - exitTimes: { A: 11, B: 6, C: 5, D: 4, E: 10, F: 9 }, - }); - assert.ok(tree instanceof GRAPH.Graph); - assert.deepEqual(tree.vertices.A.toJSON(), graph.vertices.A.toJSON()); - assert.deepEqual( - tree.eachVertex(function (v) { - return v.degree; - }), - [2, 1, 1, 0, 1, 0] - ); - - assert.deepEqual(dfs.search("B").edges, [ - { source: "B", target: "A" }, - { source: "A", target: "C" }, - { source: "C", target: "D" }, - { source: "A", target: "E" }, - { source: "E", target: "F" }, - ]); - - assert.ok(typeof dfs._cache.A === "object"); - assert.deepEqual(Object.keys(dfs._cache), ["A", "B"]); -}); - -QUnit.test("DepthFirstSearch on directed graph", function (assert) { - var graph = new GRAPH.Graph(true, DFSData), - dfs = new GRAPH.DepthFirstSearch(graph); - assert.ok(dfs instanceof GRAPH.DepthFirstSearch); - assert.ok(dfs.graph === graph); - - var search = dfs.search("A"), - tree = dfs.searchTree("A"); - assert.deepEqual(search, { - discovered: { A: true, B: true, C: true, D: true, E: true, F: true }, - edges: [ - { source: "A", target: "B" }, - { source: "B", target: "C" }, - { source: "C", target: "D" }, - { source: "A", target: "E" }, - { source: "E", target: "F" }, - ], - entryTimes: { A: 0, B: 1, C: 2, D: 3, E: 7, F: 8 }, - exitTimes: { A: 11, B: 6, C: 5, D: 4, E: 10, F: 9 }, - }); - assert.ok(tree instanceof GRAPH.Graph); - assert.deepEqual(tree.vertices.A.toJSON(), graph.vertices.A.toJSON()); - assert.deepEqual( - tree.eachVertex(function (v) { - return v.degree; - }), - [2, 1, 1, 0, 1, 0] - ); - - assert.deepEqual(dfs.search("B").edges, [ - { source: "B", target: "C" }, - { source: "C", target: "D" }, - ]); - - assert.ok(typeof dfs._cache.A === "object"); - assert.deepEqual(Object.keys(dfs._cache), ["A", "B"]); -}); - -// ------------------------------------------------------------------------ components -//*/ -QUnit.test("weakComponents on undirected graph", function (assert) { - var graph = new GRAPH.Graph(false, { - vertices: [{ name: "A" }, { name: "B" }, { name: "C" }, { name: "D" }, { name: "E" }], - edges: [ - { source: "A", target: "B" }, - { source: "C", target: "D" }, - ], - }); - assert.equal(graph.numEdges, 4); - var components = graph.weakComponents(); - assert.equal(components.length, 3); -}); - -QUnit.test("weakComponents on directed graph", function (assert) { - var graph, components; - graph = new GRAPH.Graph(true, { - vertices: [{ name: "A" }, { name: "B" }, { name: "C" }, { name: "D" }, { name: "E" }], - edges: [ - { source: "A", target: "B" }, - { source: "D", target: "C" }, - ], - }); - assert.equal(graph.numEdges, 2); - - components = graph.weakComponents(); - assert.equal(components.length, 3); - - graph = new GRAPH.Graph(true, { - vertices: [ - { name: "A", data: 100 }, - { name: "B", data: 200 }, - { name: "C", data: 30 }, - { name: "D", data: 40 }, - { name: "E", data: 500 }, - { name: "F", data: 600 }, - { name: "G", data: 7 }, - ], - edges: [ - { source: "A", target: "B" }, - { source: "D", target: "C" }, - { source: "E", target: "A" }, - { source: "F", target: "E" }, - ], - }); - components = graph.weakComponents(); - assert.equal(components.length, 3); - // data retained - assert.equal(components[0].vertices[0].data, 100); - - assert.equal(components[0].vertices.length, 4); - assert.deepEqual(components[0].edges, [ - { source: "A", target: "B" }, - { source: "E", target: "A" }, - { source: "F", target: "E" }, - ]); - - assert.equal(components[1].vertices.length, 2); - assert.deepEqual(components[1].edges, [{ source: "D", target: "C" }]); - - assert.deepEqual(components[2].vertices, [{ name: "G", data: 7 }]); - assert.deepEqual(components[2].edges.length, 0); -}); diff --git a/client/tests/qunit/tests/jquery_plugin_tests.js b/client/tests/qunit/tests/jquery_plugin_tests.js deleted file mode 100644 index 2d2cc1cc83e..00000000000 --- a/client/tests/qunit/tests/jquery_plugin_tests.js +++ /dev/null @@ -1,17 +0,0 @@ -/* global QUnit */ -import $ from "jquery"; -import testApp from "../test-app"; - -QUnit.module("Galaxy jquery plugin test", { - beforeEach: function () { - testApp.create(); - }, - afterEach: function () { - testApp.destroy(); - }, -}); - -QUnit.test("Check jquery for tooltip and select2", function (assert) { - assert.ok($.fn.tooltip); - assert.ok($.fn.select2); -}); diff --git a/client/tests/qunit/tests/metrics_logger_tests.js b/client/tests/qunit/tests/metrics_logger_tests.js deleted file mode 100644 index ce069fcf3c7..00000000000 --- a/client/tests/qunit/tests/metrics_logger_tests.js +++ /dev/null @@ -1,379 +0,0 @@ -// This file isn't really testing anything useful yet, it is just testing -// (or demonstrating) qunit+backbone interactions. - -/* global QUnit */ -import jQuery from "jquery"; -import sinon from "sinon"; -import metrics from "utils/metrics-logger"; -import testApp from "../test-app"; - -var MockConsole = function () { - var self = this; - self.lastMessage = null; - ["log", "debug", "info", "warn", "error"].forEach(function (fnName) { - self[fnName] = function () { - var args = Array.prototype.slice.call(arguments, 0); - self.lastMessage = { level: fnName, args: args }; - }; - }); - return self; -}; - -(window.bootstrapped = {}).user = { - id: "test", -}; - -QUnit.module("Metrics logger tests", { - beforeEach: function () { - testApp.create(); - }, - afterEach: function () { - testApp.destroy(); - }, -}); - -// ======================================================================== MetricsLogger -QUnit.test("logger construction/initializiation defaults", function (assert) { - var logger = new metrics.MetricsLogger({}); - assert.equal(logger.consoleLogger, null); - assert.equal(logger.options.logLevel, metrics.MetricsLogger.NONE); - assert.equal(logger.options.consoleLevel, metrics.MetricsLogger.NONE); - assert.equal(logger.options.defaultNamespace, "Galaxy"); - assert.equal(logger.options.clientPrefix, "client."); - assert.equal(logger.options.postSize, 1000); - assert.equal(logger.options.maxCacheSize, 3000); - assert.equal(logger.options.addTime, true); - assert.equal(logger.options.postUrl, "/api/metrics"); - assert.equal(logger.options.getPingData, undefined); - assert.equal(logger.options.onServerResponse, undefined); - - assert.equal(logger._postSize, 1000); - assert.equal(logger.cache.constructor, metrics.LoggingCache); -}); - -QUnit.test("_parseLevel", function (assert) { - var logger = new metrics.MetricsLogger({}); - assert.equal(logger._parseLevel("all"), metrics.MetricsLogger.ALL); - assert.equal(logger._parseLevel("debug"), metrics.MetricsLogger.DEBUG); - assert.equal(logger._parseLevel("info"), metrics.MetricsLogger.INFO); - assert.equal(logger._parseLevel("warn"), metrics.MetricsLogger.WARN); - assert.equal(logger._parseLevel("error"), metrics.MetricsLogger.ERROR); - assert.equal(logger._parseLevel("metric"), metrics.MetricsLogger.METRIC); - assert.equal(logger._parseLevel("none"), metrics.MetricsLogger.NONE); - assert.equal(logger._parseLevel(15), 15); - - assert.throws( - function () { - logger._parseLevel(undefined); - }, - /Unknown log level/, - "Unknown log level throws error" - ); - assert.throws( - function () { - logger._parseLevel("nope"); - }, - /Unknown log level/, - "Unknown log level throws error" - ); -}); - -// ------------------------------------------------------------------------ Emit to cache -QUnit.test("emit to cache at level", function (assert) { - var logger = new metrics.MetricsLogger({ - logLevel: "metric", - }); - logger.cache.empty(); - - assert.equal(logger.options.logLevel, metrics.MetricsLogger.METRIC); - logger.emit("metric", "test", [1, 2, { three: 3 }]); - assert.equal(logger.cache.length(), 1); - - var cached = logger.cache.get(1)[0]; - //console.debug( 'cached:', JSON.stringify( cached ) ); - assert.equal(cached.level, metrics.MetricsLogger.METRIC); - assert.equal(cached.namespace, "client.test"); - assert.equal(cached.args.length, 3); - assert.equal(cached.args[2].three, 3); - assert.ok(typeof cached.time === "string"); - assert.ok(cached.time === new Date(cached.time).toISOString()); -}); - -QUnit.test("emit to cache below does not cache", function (assert) { - var logger = new metrics.MetricsLogger({ - logLevel: "metric", - }); - logger.cache.empty(); - - logger.emit("error", "test", [1, 2, { three: 3 }]); - assert.equal(logger.cache.length(), 0); -}); - -QUnit.test("emit to cache (silently) drops non-parsable", function (assert) { - var logger = new metrics.MetricsLogger({ - logLevel: "metric", - }); - logger.cache.empty(); - - logger.emit("metric", "test", [{ window: window }]); - assert.equal(logger.cache.length(), 0); -}); - -function metricsFromRequestBody(request) { - // assumes 'metrics' is only entry in requestBody - return JSON.parse(decodeURIComponent(request.requestBody.replace("metrics=", ""))); -} - -QUnit.test("_postCache success", function (assert) { - var callback = sinon.spy(), - logger = new metrics.MetricsLogger({ - logLevel: "metric", - onServerResponse: function (response) { - callback(); - }, - }); - logger.cache.empty(); - - var server = sinon.fakeServer.create(), - metricsOnServer; - server.respondWith("POST", "/api/metrics", function (request) { - metricsOnServer = metricsFromRequestBody(request); - //console.debug( 'requestBody:', request.requestBody ); - //console.debug( 'metricsOnServer:', JSON.stringify( metricsOnServer, null, ' ' ) ); - request.respond( - 200, - { "Content-Type": "application/json" }, - JSON.stringify({ - fakeResponse: "yes", - }) - ); - }); - - logger.emit("metric", "test", [1, 2, { three: 3 }]); - logger._postCache(); - server.respond(); - - assert.ok(callback.calledOnce, "onServerResponse was called"); - assert.equal(logger.cache.length(), 0, "should have emptied cache (on success)"); - assert.equal(logger._postSize, 1000, "_postSize still at default"); - - // metrics were in proper form on server - assert.equal(metricsOnServer.length, 1); - var metric = metricsOnServer[0]; - assert.equal(metric.level, metrics.MetricsLogger.METRIC); - assert.equal(metric.namespace, "client.test"); - assert.equal(metric.args.length, 3); - assert.equal(metric.args[2].three, 3); - assert.ok(typeof metric.time === "string"); - assert.ok(metric.time === new Date(metric.time).toISOString()); - - server.restore(); -}); - -QUnit.test("_postCache failure", function (assert) { - var callback = sinon.spy(), - logger = new metrics.MetricsLogger({ - logLevel: "metric", - onServerResponse: function (response) { - callback(); - }, - }); - logger.cache.empty(); - - var server = sinon.fakeServer.create(); - server.respondWith("POST", "/api/metrics", function (request) { - request.respond( - 500, - { "Content-Type": "application/json" }, - JSON.stringify({ - err_msg: "NoooOPE!", - }) - ); - }); - - logger.emit("metric", "test", [1, 2, { three: 3 }]); - logger._postCache(); - server.respond(); - //TODO: is the following what we want? - assert.ok(!callback.calledOnce, "onServerResponse was NOT called"); - assert.equal(logger.cache.length(), 1, "should NOT have emptied cache"); - assert.equal(logger._postSize, logger.options.maxCacheSize, "_postSize changed to max"); - - server.restore(); -}); - -// ------------------------------------------------------------------------ Emit to console -QUnit.test("emit to console at level", function (assert) { - var mockConsole = new MockConsole(), - logger = new metrics.MetricsLogger({ - consoleLevel: "debug", - consoleLogger: mockConsole, - }); - assert.equal(logger.options.consoleLevel, metrics.MetricsLogger.DEBUG); - assert.equal(logger.consoleLogger.constructor, MockConsole); - - logger.emit("debug", "test", [1, 2, { three: 3 }]); - assert.equal(logger.cache.length(), 1); - //console.debug( JSON.stringify( mockConsole.lastMessage ) ); - assert.equal(mockConsole.lastMessage.level, "debug"); - assert.equal(mockConsole.lastMessage.args.length, 4); - assert.equal(mockConsole.lastMessage.args[0], "test"); - assert.equal(mockConsole.lastMessage.args[3].three, 3); -}); - -QUnit.test("emit to console below does not output", function (assert) { - var mockConsole = new MockConsole(), - logger = new metrics.MetricsLogger({ - consoleLevel: "error", - consoleLogger: mockConsole, - }); - logger.emit("debug", "test", [1, 2, { three: 3 }]); - assert.equal(mockConsole.lastMessage, null); -}); - -// ------------------------------------------------------------------------ Shortcuts -QUnit.test("logger shortcuts emit to default namespace properly", function (assert) { - var logger = new metrics.MetricsLogger({ - logLevel: "all", - }); - logger.cache.empty(); - - assert.equal(logger.options.logLevel, metrics.MetricsLogger.ALL); - logger.log(0); - logger.debug(1); - logger.info(2); - logger.warn(3); - logger.error(4); - logger.metric(5); - - assert.equal(logger.cache.length(), 6); - var cached = logger.cache.remove(6), - entry; - - cached.forEach(function (entry) { - assert.ok(entry.namespace === logger.options.clientPrefix + logger.options.defaultNamespace); - assert.ok(jQuery.type(entry.args) === "array"); - assert.ok(typeof entry.time === "string"); - }); - - // log is different - entry = cached[0]; - assert.ok(entry.level === 1); - assert.ok(entry.args[0] === 0); - - ["debug", "info", "warn", "error", "metric"].forEach(function (level, i) { - entry = cached[i + 1]; - assert.ok(entry.level === logger._parseLevel(level)); - assert.ok(entry.args[0] === i + 1); - }); -}); - -// ======================================================================== LoggingCache -QUnit.test("cache construction/initializiation defaults", function (assert) { - // use empty to prevent tests stepping on one another due to persistence - var cache = new metrics.LoggingCache({ key: "logs-test" }).empty(); - assert.equal(cache.maxSize, 5000); - assert.equal(window.localStorage.getItem("logs-test"), "[]"); -}); - -QUnit.test("cache construction/initializiation failure", function (assert) { - ////TODO: doesn't work - readonly - //window.localStorage = null; - //console.debug( 'localStorage:', window.localStorage ); - var oldFn = metrics.LoggingCache.prototype._hasStorage; - metrics.LoggingCache.prototype._hasStorage = function () { - return false; - }; - assert.throws( - function () { - return new metrics.LoggingCache({ key: "logs-test" }); - }, - /LoggingCache needs localStorage/, - "lack of localStorage throws error" - ); - metrics.LoggingCache.prototype._hasStorage = oldFn; - - assert.throws( - function () { - return new metrics.LoggingCache(); - }, - /LoggingCache needs key for localStorage/, - "lack of key throws error" - ); -}); - -QUnit.test("cache construction/initializiation setting max cache size", function (assert) { - var cache = new metrics.LoggingCache({ - key: "logs-test", - maxSize: 5, - }).empty(); - assert.equal(cache.maxSize, 5); -}); - -QUnit.test("cache plays well with no data", function (assert) { - var cache = new metrics.LoggingCache({ key: "logs-test" }).empty(); - - assert.equal(cache.length(), 0); - var get = cache.get(10); - assert.ok(jQuery.type(get) === "array" && get.length === 0); - var remove = cache.remove(10); - assert.ok(jQuery.type(remove) === "array" && remove.length === 0); - assert.equal(cache.length(), 0); -}); - -QUnit.test("cache add properly adds and removes data", function (assert) { - var cache = new metrics.LoggingCache({ - key: "logs-test", - maxSize: 5, - }).empty(); - - var entry1 = [{ one: 1 }, "two"]; - cache.add(entry1); - - assert.equal(cache.length(), 1); - assert.equal(JSON.stringify(cache.get(1)[0]), JSON.stringify(entry1)); - - var entry2 = { blah: { one: 1 }, bler: ["three", { two: 2 }] }; - cache.add(entry2); - assert.equal(cache.length(), 2); - assert.equal(cache.stringify(2), "[" + JSON.stringify(entry1) + "," + JSON.stringify(entry2) + "]"); - - // FIFO - var returned = cache.remove(1); - assert.equal(cache.length(), 1); - assert.ok(jQuery.type(returned) === "array" && returned.length === 1); - var returned0 = returned[0]; - assert.ok(jQuery.type(returned0) === "array" && JSON.stringify(returned0) === JSON.stringify(entry1)); -}); - -QUnit.test("cache past max loses oldest", function (assert) { - var cache = new metrics.LoggingCache({ - key: "logs-test", - maxSize: 5, - }).empty(); - - for (var i = 0; i < 10; i += 1) { - cache.add({ index: i }); - } - assert.equal(cache.length(), 5); - var get = cache.get(5); - assert.ok(get[0].index === 5); - assert.ok(get[1].index === 6); - assert.ok(get[2].index === 7); - assert.ok(get[3].index === 8); - assert.ok(get[4].index === 9); -}); - -QUnit.test("cache is properly persistent", function (assert) { - var cache1 = new metrics.LoggingCache({ key: "logs-test" }).empty(), - entry = [{ one: 1 }, "two"]; - cache1.add(entry); - assert.equal(cache1.length(), 1); - - var cache2 = new metrics.LoggingCache({ key: "logs-test" }); - assert.equal(cache2.length(), 1, "old key gets previously stored"); - assert.equal(JSON.stringify(cache2.get(1)[0]), JSON.stringify(entry)); - - var cache3 = new metrics.LoggingCache({ key: "logs-bler" }); - assert.equal(cache3.length(), 0, "new key causes new storage"); -}); diff --git a/client/tests/qunit/tests/modal_tests.js b/client/tests/qunit/tests/modal_tests.js deleted file mode 100644 index b7d3ed7ed90..00000000000 --- a/client/tests/qunit/tests/modal_tests.js +++ /dev/null @@ -1,86 +0,0 @@ -/* global QUnit */ -import $ from "jquery"; -import testApp from "../test-app"; -import GalaxyModal from "mvc/ui/ui-modal"; - -QUnit.module("Modal dialog test", { - beforeEach: function () { - $.fx.off = true; - testApp.create(); - var self = this; - this.app = new GalaxyModal.View({ - title: "Test title", - body: "Test body", - buttons: { - Ok: function () {}, - Cancel: function () { - self.app.hide(); - }, - }, - }); - }, - afterEach: function () { - $.fx.off = false; - testApp.destroy(); - this.app.$el.remove(); - }, -}); - -QUnit.test("test dialog attributes", function (assert) { - assert.ok(this.app.$header.find(".title").html() == "Test title", "Modal header has correct title."); - assert.ok(this.app.$body.html() == "Test body", "Modal header has correct body."); -}); - -QUnit.test("test dialog visibility", function (assert) { - this.app.hide(); - assert.ok(this.app.$el.css("display") == "none", "Modal hidden manually"); - this.app.show(); - assert.ok(this.app.$el.css("display") == "block", "Modal shown manually"); - this.app.getButton("Ok").trigger("click"); - assert.ok(this.app.$el.css("display") == "block", "Modal still visible after clicking Ok"); - this.app.getButton("Cancel").trigger("click"); - assert.ok(this.app.$el.css("display") == "none", "Modal hidden after clicking Cancel"); - this.app.show(); - assert.ok(this.app.$el.css("display") == "block", "Modal manually shown again"); - assert.ok(!this.app.$header.hasClass("no-separator"), "Title separator tagged as visible."); - this.app.show({ title_separator: false }); - assert.ok(this.app.$header.hasClass("no-separator"), "Title separator tagged as hidden."); - assert.ok(this.app.$backdrop.hasClass("in"), "Backdrop tagged as shown."); - this.app.show({ backdrop: false }); - assert.ok(!this.app.$backdrop.hasClass("in"), "Backdrop tagged as hidden."); -}); - -QUnit.test("test dialog closing events", function (assert) { - this.app.show(); - this.app.$backdrop.trigger("click"); - assert.ok(this.app.$el.css("display") == "block", "Modal shown after backdrop click"); - this.app.hide(); - this.app.show({ closing_events: true }); - assert.ok(this.app.$el.css("display") == "block", "Modal shown with closing events"); - this.app.$backdrop.trigger("click"); - assert.ok(this.app.$el.css("display") == "none", "Modal hidden after backdrop click"); -}); - -QUnit.test("test dialog rendering", function (assert) { - var before = this.app.$el.html(); - this.app.render(); - assert.ok(before == this.app.$el.html(), "Re-rendering successful"); - this.app.options.title = "New Title"; - this.app.render(); - assert.ok(this.app.$header.find(".title").html() == "New Title", "Modal header has correct new title."); -}); - -QUnit.test("test button states", function (assert) { - assert.ok(this.app.getButton("Ok").html() === "Ok", "Ok has correct label"); - assert.ok(!this.app.getButton("Ok").prop("disabled"), "Ok is active"); - assert.ok(!this.app.getButton("Cancel").prop("disabled"), "Cancel is active"); - this.app.disableButton("Ok"); - assert.ok(this.app.getButton("Ok").prop("disabled"), "Ok is disabled"); - assert.ok(!this.app.getButton("Cancel").prop("disabled"), "Cancel is still active"); - this.app.disableButton("Cancel"); - assert.ok(this.app.getButton("Cancel").prop("disabled"), "Cancel is also disabled"); - assert.ok(this.app.getButton("Ok").prop("disabled"), "Ok is still disabled"); - this.app.enableButton("Ok"); - assert.ok(this.app.getButton("Cancel").prop("disabled"), "Cancel is still disabled"); - assert.ok(!this.app.getButton("Ok").prop("disabled"), "Ok is active again"); -}); diff --git a/client/tests/qunit/tests/ui_tests.js b/client/tests/qunit/tests/ui_tests.js deleted file mode 100644 index 92905554f21..00000000000 --- a/client/tests/qunit/tests/ui_tests.js +++ /dev/null @@ -1,896 +0,0 @@ -/* global QUnit */ -import $ from "jquery"; -import testApp from "../test-app"; -import sinon from "sinon"; -import Ui from "mvc/ui/ui-misc"; -import SelectContent from "mvc/ui/ui-select-content"; -import Drilldown from "mvc/ui/ui-drilldown"; -import Tabs from "mvc/ui/ui-tabs"; - -QUnit.module("Ui test", { - beforeEach: function () { - testApp.create(); - this.clock = sinon.useFakeTimers(); - }, - afterEach: function () { - testApp.destroy(); - this.clock.restore(); - }, -}); - -QUnit.test("tabs", function (assert) { - assert.ok($.fn); - var self = this; - var tabs = new Tabs.View({}); - var collection = tabs.collection; - collection.add({ id: "id_a", title: "title_a", icon: "icon_a", $el: "el_a" }); - var _test = function () { - self.clock.tick(window.WAIT_FADE); - collection.each(function (model, index) { - var $tab_element = tabs.$("#tab-" + model.id + " .nav-link"); - var $tab_content = tabs.$("#" + model.id); - var is_current = model.id == tabs.model.get("current"); - assert.ok($tab_content.hasClass("active") == is_current, "Active state of content."); - assert.ok($tab_element.hasClass("active") == is_current, "Active state of element."); - }); - }; - $("body").prepend(tabs.$el); - _test(); - collection.add({ id: "id_b", title: "title_b", icon: "icon_b", $el: "el_b" }); - _test(); - tabs.collection.get("id_b").set("hidden", true); - _test(); - collection.add({ id: "id_c", title: "title_c", icon: "icon_c", $el: "el_c" }); - tabs.model.set("current", "id_c"); - _test(); - tabs.collection.get("id_b").set("hidden", false); - _test(); - tabs.model.set("current", "id_b"); - _test(); - tabs.model.set("visible", false); - tabs.collection.reset(); - self.clock.tick(window.WAIT_FADE); - assert.ok(tabs.$el.css("display", "none"), "Everything hidden."); - tabs.model.set("visible", true); - self.clock.tick(window.WAIT_FADE); - assert.ok(tabs.$el.css("display", "block"), "Everything shown."); - collection.add({ id: "id_c", title: "title_c", icon: "icon_c", $el: "el_c" }); - tabs.model.set("current", "id_c"); - _test(); -}); - -QUnit.test("button-default", function (assert) { - var button = new Ui.Button({ title: "title" }); - var model = button.model; - $("body").prepend(button.$el); - assert.ok(button.$title.html() == "title", "Has correct title"); - model.set("title", "_title"); - assert.ok(button.$title.html() == "_title", "Has correct new title"); - assert.ok(!button.$el.attr("disabled"), "Button active"); - model.set("disabled", true); - assert.ok(button.$el.attr("disabled"), "Button disabled"); - model.set("disabled", false); - assert.ok(!button.$el.attr("disabled"), "Button active, again"); - model.set("wait", true); - assert.ok(button.$title.html() == model.get("wait_text"), "Shows correct wait text"); - model.set("wait_text", "wait_text"); - assert.ok(button.$title.html() == "wait_text", "Shows correct new wait text"); - model.set("wait", false); - assert.ok(button.$title.html() == model.get("title"), "Shows correct regular title"); -}); - -QUnit.test("button-default", function (assert) { - var button = new Ui.Button({ title: "title" }); - var model = button.model; - $("body").prepend(button.$el); - assert.ok(button.$title.html() == "title", "Has correct title"); - model.set("title", "_title"); - assert.ok(button.$title.html() == "_title", "Has correct new title"); - assert.ok(!button.$el.attr("disabled"), "Button active"); - model.set("disabled", true); - assert.ok(button.$el.attr("disabled"), "Button disabled"); - model.set("disabled", false); - assert.ok(!button.$el.attr("disabled"), "Button active, again"); - model.set("wait", true); - assert.ok(button.$title.html() == model.get("wait_text"), "Shows correct wait text"); - model.set("wait_text", "wait_text"); - assert.ok(button.$title.html() == "wait_text", "Shows correct new wait text"); - model.set("wait", false); - assert.ok(button.$title.html() == model.get("title"), "Shows correct regular title"); -}); - -QUnit.test("button-check", function (assert) { - var button = new Ui.ButtonCheck({ title: "title" }); - var model = button.model; - $("body").prepend(button.$el); - assert.ok(button.$title.html() == "title", "Has correct title"); - model.set("title", "_title"); - assert.ok(button.$title.html() == "_title", "Has correct new title"); - assert.ok(button.$icon.hasClass(button.model.get("icons")[0]), "Has correct " + model.get("value") + " value"); - button.value(1); - assert.ok(button.$icon.hasClass(button.model.get("icons")[1]), "Has correct " + model.get("value") + " value"); - button.value(2); - assert.ok(button.$icon.hasClass(button.model.get("icons")[2]), "Has correct " + model.get("value") + " value"); - button.value(0, 100); - assert.ok( - button.$icon.hasClass(button.model.get("icons")[0]), - "Has correct " + model.get("value") + " value after fraction" - ); - button.value(10, 100); - assert.ok( - button.$icon.hasClass(button.model.get("icons")[1]), - "Has correct " + model.get("value") + " value after fraction" - ); - button.value(100, 100); - assert.ok( - button.$icon.hasClass(button.model.get("icons")[2]), - "Has correct " + model.get("value") + " value after fraction" - ); - button.$el.trigger("click"); - assert.ok( - button.$icon.hasClass(button.model.get("icons")[0]), - "Has correct " + model.get("value") + " value after click" - ); - button.$el.trigger("click"); - assert.ok( - button.$icon.hasClass(button.model.get("icons")[2]), - "Has correct " + model.get("value") + " value after click" - ); - button.$el.trigger("click"); - assert.ok( - button.$icon.hasClass(button.model.get("icons")[0]), - "Has correct " + model.get("value") + " value after click" - ); -}); - -QUnit.test("options", function (assert) { - function _test(obj, options) { - assert.ok(JSON.stringify(obj.value()) == JSON.stringify(options.value), "Selected value is " + options.value); - assert.ok( - obj.$menu.css("display") == (options.menu_visible ? "block" : "none"), - "Menu visibility: " + options.menu_visible - ); - assert.ok( - obj.$message.css("display") == (options.message_visible ? "block" : "none"), - "Message visibility: " + options.message_visible - ); - assert.ok( - obj.$options.css("display") == (options.options_visible ? "inline-block" : "none"), - "Options visibility: " + options.options_visible - ); - options.message_cls && - assert.ok(obj.$message.hasClass(options.message_cls), "Message has class: " + options.message_cls); - assert.ok(obj.length() === options.length, "Number of options: " + options.length); - options.message_text && - assert.ok(obj.$message.html() === options.message_text, "Message text is: " + options.message_text); - options.first && assert.ok(obj.first() === options.first, "First value is: " + options.first); - options.all_icon && - assert.ok( - obj.all_button.$(".icon").hasClass(options.all_icon), - "All button in correct state: " + options.all_icon - ); - assert.ok( - obj.$menu.find(".ui-button-check").length === (options.all_icon ? 1 : 0), - "All button available: " + Boolean(options.all_active) - ); - } - - var radio = new Ui.Radio.View({}); - $("body").prepend(radio.$el); - radio.model.set("visible", false); - assert.ok(radio.value() === null, "Initial value is `null`."); - assert.ok(radio.$el.css("display") === "none", "Options hidden."); - radio.model.set("visible", true); - assert.ok(radio.$el.css("display") === "block", "Options shown."); - radio.model.set("value", "Unavailable."); - assert.ok(radio.value() === null, "Unavailable value ignored."); - _test(radio, { - menu_visible: false, - message_visible: true, - message_text: "No options available.", - message_cls: "alert-danger", - options_visible: false, - value: null, - length: 0, - }); - radio.model.set("wait", true); - _test(radio, { - menu_visible: false, - message_visible: true, - message_text: "Please wait...", - message_cls: "alert-info", - options_visible: false, - value: null, - length: 0, - }); - radio.model.set("wait", false); - _test(radio, { - menu_visible: false, - message_visible: true, - message_text: "No options available.", - message_cls: "alert-danger", - options_visible: false, - value: null, - length: 0, - }); - radio.model.set("data", [ - { value: "valuea", label: "labela" }, - { value: "valueb", label: "labelb" }, - ]); - _test(radio, { - menu_visible: true, - message_visible: false, - options_visible: true, - value: "valuea", - first: "valuea", - length: 2, - }); - radio.model.set("value", "valueb"); - _test(radio, { - menu_visible: true, - message_visible: false, - options_visible: true, - value: "valueb", - first: "valuea", - length: 2, - }); - radio.model.set("data", null); - _test(radio, { - menu_visible: false, - message_visible: true, - message_text: "No options available.", - message_cls: "alert-danger", - options_visible: false, - value: null, - first: null, - length: 0, - }); - radio.model.set("data", [ - { value: "valuea", label: "labela" }, - { value: "valueb", label: "labelb" }, - { value: "valuec", label: "labelc" }, - ]); - _test(radio, { - menu_visible: true, - message_visible: false, - options_visible: true, - value: "valueb", - first: "valuea", - length: 3, - }); - radio.$("input").last().click(); - _test(radio, { - menu_visible: true, - message_visible: false, - options_visible: true, - value: "valuec", - first: "valuea", - length: 3, - }); - - var check = new Ui.Checkbox.View({}); - $("body").prepend(check.$el); - _test(check, { - menu_visible: false, - message_visible: true, - message_text: "No options available.", - message_cls: "alert-danger", - options_visible: false, - value: null, - length: 0, - all_icon: "fa-square-o", - }); - check.model.set("data", [ - { value: "valuea", label: "labela" }, - { value: "valueb", label: "labelb" }, - { value: "valuec", label: "labelc" }, - ]); - _test(check, { - menu_visible: true, - message_visible: false, - options_visible: true, - value: null, - length: 3, - all_icon: "fa-square-o", - }); - check.model.set("value", ["valuea", "valuec"]); - _test(check, { - menu_visible: true, - message_visible: false, - options_visible: true, - value: ["valuea", "valuec"], - length: 3, - all_icon: "fa-minus-square-o", - }); - check.model.set("value", ["valuea", "valueb", "valuec"]); - _test(check, { - menu_visible: true, - message_visible: false, - options_visible: true, - value: ["valuea", "valueb", "valuec"], - length: 3, - all_icon: "fa-check-square-o", - }); - check.model.set("data", []); - _test(check, { - menu_visible: false, - message_visible: true, - options_visible: false, - value: null, - length: 0, - all_icon: "fa-square-o", - }); - check.model.set("data", [ - { value: "valuea", label: "labela" }, - { value: "valueb", label: "labelb" }, - ]); - _test(check, { - menu_visible: true, - message_visible: false, - options_visible: true, - value: ["valuea", "valueb"], - first: "valuea", - length: 2, - all_icon: "fa-check-square-o", - }); - check.all_button.$el.click(); - _test(check, { - menu_visible: true, - message_visible: false, - options_visible: true, - value: null, - first: "valuea", - length: 2, - all_icon: "fa-square-o", - }); - check.all_button.$el.click(); - _test(check, { - menu_visible: true, - message_visible: false, - options_visible: true, - value: ["valuea", "valueb"], - first: "valuea", - length: 2, - all_icon: "fa-check-square-o", - }); - check.$("input").last().click(); - _test(check, { - menu_visible: true, - message_visible: false, - options_visible: true, - value: ["valuea"], - first: "valuea", - length: 2, - all_icon: "fa-minus-square-o", - }); - check.$("input").last().click(); - _test(check, { - menu_visible: true, - message_visible: false, - options_visible: true, - value: ["valuea", "valueb"], - first: "valuea", - length: 2, - all_icon: "fa-check-square-o", - }); - - var radiobutton = new Ui.RadioButton.View({}); - $("body").prepend(radiobutton.$el); - radiobutton.model.set("data", [ - { value: "valuea", label: "labela" }, - { value: "valueb", label: "labelb" }, - ]); - _test(radiobutton, { - menu_visible: true, - message_visible: false, - options_visible: true, - value: "valuea", - first: "valuea", - length: 2, - }); - radiobutton.$("input").last().click(); - _test(radiobutton, { - menu_visible: true, - message_visible: false, - options_visible: true, - value: "valueb", - first: "valuea", - length: 2, - }); - - var drilldown = new Drilldown.View({}); - $("body").prepend(drilldown.$el); - drilldown.model.set("data", [ - { - value: "valuea", - name: "labela", - options: [ - { value: "valueb", name: "labelb" }, - { value: "valuec", name: "labelc" }, - { - value: "valued", - name: "labeld", - options: [ - { value: "valuee", name: "labele" }, - { value: "valuef", name: "labelf" }, - ], - }, - ], - }, - { - value: "valueg", - name: "labelg", - options: [ - { value: "valueh", name: "labelh" }, - { value: "valuei", name: "labeli" }, - { - value: "valuej", - name: "labelj", - options: [ - { value: "valuek", name: "labelk" }, - { value: "valuel", name: "labell" }, - { value: "valuem", name: "labelm" }, - ], - }, - ], - }, - { value: "valuen", name: "labeln" }, - ]); - _test(drilldown, { - menu_visible: true, - message_visible: false, - options_visible: true, - value: null, - first: "valuea", - length: 14, - all_icon: "fa-square-o", - }); - drilldown.model.set("value", ["valuek", "valuen"]); - _test(drilldown, { - menu_visible: true, - message_visible: false, - options_visible: true, - value: ["valuek", "valuen"], - first: "valuea", - length: 14, - all_icon: "fa-minus-square-o", - }); - var drillradio = new Drilldown.View({ display: "radio" }); - $("body").prepend(drillradio.$el); - _test(drillradio, { - menu_visible: false, - message_visible: true, - options_visible: false, - value: null, - length: 0, - }); - drillradio.model.set("data", drilldown.model.get("data")); - _test(drillradio, { - menu_visible: true, - message_visible: false, - options_visible: true, - value: "valuea", - first: "valuea", - length: 14, - }); -}); - -QUnit.test("select-default", function (assert) { - function _test(options) { - assert.ok( - JSON.stringify(select.value()) == JSON.stringify(options.value), - "Selected value is " + options.value - ); - assert.ok(select.text() == options.label, "Selected label is " + options.label); - assert.ok(select.$el.display === options.visible ? "block" : "none", options.visible ? "Visible" : "Hidden"); - assert.ok(select.data.length === options.count && select.length(), "Found " + options.count + " option"); - options.exists && assert.ok(select.exists(options.exists), "Found value: " + options.exists); - assert.ok( - select.$select.prop("multiple") === Boolean(options.multiple), - "Multiple state set to: " + options.multiple - ); - assert.ok(Boolean(select.all_button) === Boolean(options.multiple), "Visiblity of select all button correct."); - options.multiple && - assert.ok( - select.all_button.$(".icon").hasClass(options.all_icon), - "All button in correct state: " + options.all_icon - ); - } - var select = new Ui.Select.View({}); - $("body").prepend(select.$el); - assert.ok(select.first() === "__null__", "First select is '__null__'"); - assert.ok(select.$dropdown.hasClass("fa-caret-down"), "Caret down shown."); - select.model.set("data", [{ value: "value", label: "label" }]); - _test({ - value: "value", - label: "label", - visible: true, - count: 1, - }); - select.model.set("data", [ - { value: "valuea", label: "labela" }, - { value: "valueb", label: "labelb" }, - ]); - _test({ - value: "valuea", - label: "labela", - visible: true, - count: 2, - exists: "valueb", - }); - select.value("valueb"); - _test({ - value: "valueb", - label: "labelb", - visible: true, - count: 2, - }); - select.model.set("data", [{ value: "value", label: "label" }]); - _test({ - value: "value", - label: "label", - visible: true, - count: 1, - }); - select.model.set({ visible: false, value: "unavailable" }); - _test({ - value: "value", - label: "label", - visible: false, - count: 1, - }); - select.model.set({ - visible: true, - value: "valueb", - data: [ - { value: "valuea", label: "labela" }, - { value: "valueb", label: "labelb" }, - ], - }); - _test({ - value: "valueb", - label: "labelb", - visible: true, - count: 2, - exists: "valuea", - }); - select.model.set({ multiple: true }); - _test({ - value: ["valueb"], - label: "labelb", - visible: true, - count: 2, - exists: "valuea", - multiple: true, - all_icon: "fa-minus-square-o", - }); - select.model.set("value", ["valueb", "valuea"]); - _test({ - value: ["valuea", "valueb"], - label: "labela", - visible: true, - count: 2, - exists: "valueb", - multiple: true, - all_icon: "fa-check-square-o", - }); - select.model.set("value", []); - _test({ - value: null, - label: "", - visible: true, - count: 2, - exists: "valuea", - multiple: true, - all_icon: "fa-square-o", - }); - select.model.set({ multiple: false }); - _test({ - value: "valuea", - label: "labela", - visible: true, - count: 2, - exists: "valuea", - }); - select.model.set({ visible: false }); - _test({ - value: "valuea", - label: "labela", - visible: false, - count: 2, - exists: "valuea", - }); - select.model.set({ - multiple: true, - visible: true, - value: ["valueb", "valuec"], - data: [ - { value: "valuea", label: "labela" }, - { value: "valueb", label: "labelb" }, - { value: "valuec", label: "labelc" }, - ], - }); - _test({ - value: ["valueb", "valuec"], - label: "labelb", - visible: true, - count: 3, - exists: "valuea", - multiple: true, - all_icon: "fa-minus-square-o", - }); -}); - -QUnit.test("input", function (assert) { - var input = new Ui.Input(); - $("body").prepend(input.$el); - assert.ok(input.tagName === "input", "Created input."); - assert.ok(input.value() === undefined, "Input empty."); - input.model.set("value", "_value"); - assert.ok(input.$el.val() === "_value", "Input with value."); - assert.ok(!input.$el.hasClass("_cls"), "Has no custom class."); - input.model.set("cls", "_cls"); - assert.ok(input.$el.hasClass("_cls"), "Has custom class."); - assert.ok(!input.$el.attr("placeholder"), "Has no placeholder"); - input.model.set("placeholder", "_placeholder"); - assert.ok(input.$el.attr("placeholder") === "_placeholder", "Has correct placeholder"); - input.model.set("disabled", true); - assert.ok(input.$el.attr("disabled"), "Disabled"); - input.model.set("disabled", false); - assert.ok(!input.$el.attr("disabled"), "Enabled"); - input.model.set("visible", false); - assert.ok(input.$el.css("display") === "none", "Hidden"); - input.model.set("visible", true); - assert.ok(input.$el.css("display") === "inline-block", "Shown"); -}); - -QUnit.test("textarea", function (assert) { - var input = new Ui.Input({ area: true }); - $("body").prepend(input.$el); - assert.ok(input.tagName === "textarea", "Created textarea."); - assert.ok(input.value() === undefined, "Unavailable value."); - input.model.set("value", "_value"); - assert.ok(input.value() === "_value", "Correct new value."); - assert.ok(!input.$el.hasClass("_cls"), "Has no custom class."); - input.model.set("cls", "_cls"); - assert.ok(input.$el.hasClass("_cls"), "Has custom class."); -}); - -QUnit.test("nullableText", function (assert) { - // Start with null value, optional button should be off - var input = new Ui.NullableText({ area: false, value: null }); - $("body").prepend(input.$el); - assert.ok(input.text_input.tagName === "input", "input tag"); - assert.ok(input.value() === null, "null value"); - assert.ok(input.optional_button.model.get("value") === "false"); - // toggle button, will set value to `""` - input.optional_button.model.set("value", "true"); - assert.ok(input.value() === "", "Correct new value."); - // set value - input.text_input.model.set("value", "_value"); - assert.ok(input.value() === "_value", "Correct new value."); - assert.ok(input.optional_button.model.get("value") === "true"); - // toggle button to false, will reset value to null - input.optional_button.model.set("value", "false"); - assert.ok(input.value() === null, "Correct new value."); - assert.ok(input.optional_button.model.get("value") === "false"); - // New input, start with value, optional button should be on - var definedInput = new Ui.NullableText({ area: false, value: "123" }); - assert.ok(definedInput.value() === "123"); - assert.ok(definedInput.optional_button.model.get("value") === "true"); -}); - -QUnit.test("message", function (assert) { - var message = new Ui.Message({ - persistent: true, - message: "_message", - status: "danger", - }); - $("body").prepend(message.$el); - assert.ok(message.$el.hasClass("alert-danger"), "Alert danger."); - message.model.set("status", "info"); - assert.ok(!message.$el.hasClass("alert-danger"), "Alert danger (disabled)."); - assert.ok(message.$el.hasClass("alert-info"), "Alert info."); - assert.ok(message.$el.html() === "_message", "Correct message."); - message.model.set("message", "_new_message"); - assert.ok(message.$el.html() === "_new_message", "Correct new message."); -}); - -QUnit.test("select-content", function (assert) { - var select = new SelectContent.View({}); - $("body").prepend(select.$el); - var _testSelect = function (tag, options) { - var field = select.fields[tag == "first" ? 0 : select.fields.length - 1]; - var $select = select.$(".ui-select:" + tag); - var $button = select.$(".ui-radiobutton").find("label:" + tag); - assert.ok(field.length() == options[tag + "length"], tag + " one has " + options[tag + "length"] + " options"); - assert.ok(field.data[0].value == options[tag + "value"], tag + " option has correct value"); - assert.ok(field.data[0].label == options[tag + "label"], tag + " option has correct label"); - assert.ok($select.hasClass("ui-select-multiple") == options[tag + "multiple"], "Check multiple option"); - $button.trigger("mouseover"); - var tooltip = $(".tooltip-inner:last").text(); - $button.trigger("mouseleave"); - assert.ok(tooltip.indexOf("dataset") != -1 || tooltip.indexOf("collection") != -1, "Basic tooltip check"); - }; - var _test = function (options) { - assert.ok(select.button_type.$(".ui-option:first").hasClass("active"), "First one is toggled"); - assert.ok( - select.$(".ui-select").length == options.selectfields, - "Found " + options.selectfields + " select fields" - ); - assert.ok( - select.button_type.$(".ui-option").length == options.selectfields, - "Found " + options.selectfields + " radio button options" - ); - assert.ok( - select.$(".ui-select-multiple").length == options.totalmultiple, - "Contains " + options.totalmultiple + " multiselect fields" - ); - assert.ok( - select.$el.find(".ui-options:first .ui-option").length === options.selectfields, - "Radio button count, expected " + options.selectfields - ); - assert.ok(select.$(".ui-select:first").css("display") == "block", "Check select visibility"); - assert.ok( - select.$(".ui-select:last").css("display") == (options.selectfields == 1 ? "block" : "none"), - "Last select visibility" - ); - assert.ok( - (select.button_dialog.$el.css("display") != "none") === options.showdialog, - "Data dialog button visible" - ); - _testSelect("first", options); - _testSelect("last", options); - }; - - assert.ok(select.button_type.value() == 0, "Initial mode selected by default."); - select.model.set("data", { - hda: [ - { id: "id0", name: "name0", hid: "hid0" }, - { id: "id1", name: "name1", hid: "hid1" }, - ], - hdca: [ - { id: "id2", name: "name2", hid: "hid2" }, - { id: "id3", name: "name3", hid: "hid3" }, - { id: "id4", name: "name4", hid: "hid4" }, - ], - }); - - var initial = { - selectfields: 3, - firstlength: 2, - firstvalue: "id0", - firstlabel: "hid0: name0", - firstmultiple: false, - totalmultiple: 1, - lastvalue: "id2", - lastlabel: "hid2: name2", - lastlength: 3, - lastmultiple: false, - showdialog: true, - }; - _test(initial); - - select.model.set("multiple", true); - select.model.set("type", "data"); - _test({ - selectfields: 2, - firstlength: 2, - firstvalue: "id0", - firstlabel: "hid0: name0", - firstmultiple: true, - totalmultiple: 2, - lastvalue: "id2", - lastlabel: "hid2: name2", - lastlength: 3, - lastmultiple: true, - showdialog: true, - }); - - select.model.set("multiple", false); - select.model.set("type", "data_collection"); - _test({ - selectfields: 1, - firstlength: 3, - firstvalue: "id2", - firstlabel: "hid2: name2", - firstmultiple: false, - totalmultiple: 0, - lastvalue: "id2", - lastlabel: "hid2: name2", - lastlength: 3, - lastmultiple: false, - showdialog: false, - }); - - select.model.set("type", "module_data_collection"); - _test({ - selectfields: 2, - firstlength: 3, - firstvalue: "id2", - firstlabel: "hid2: name2", - firstmultiple: false, - totalmultiple: 1, - lastvalue: "id2", - lastlabel: "hid2: name2", - lastlength: 3, - lastmultiple: true, - showdialog: false, - }); - - select.model.set("type", "module_data"); - _test({ - selectfields: 2, - firstlength: 2, - firstvalue: "id0", - firstlabel: "hid0: name0", - firstmultiple: false, - totalmultiple: 1, - lastvalue: "id0", - lastlabel: "hid0: name0", - lastlength: 2, - lastmultiple: true, - showdialog: true, - }); - - select.model.set("type", "data"); - _test(initial); - - select.model.set("wait", true); - assert.ok(select.$(".icon-dropdown").hasClass("fa-spinner"), "Shows spinner"); - select.model.set("wait", false); - assert.ok(select.$(".icon-dropdown").hasClass("fa-caret-down"), "Shows caret"); - select.model.set("optional", true); - assert.ok(select.fields[0].data[0].value == "__null__", "First option is optional value"); - select.model.set("optional", false); - assert.ok(select.fields[0].data[0].value != "__null__", "First option is not optional value"); - - select.model.set("value", { values: [{ id: "id1", src: "hda" }] }); - assert.ok( - JSON.stringify(select.value()) == '{"values":[{"id":"id1","name":"name1","hid":"hid1"}],"batch":false}', - "Checking single value" - ); - - assert.ok(select.config[select.model.get("current")].src == "hda", "Matched dataset field"); - assert.ok(!select.config[select.model.get("current")].multiple, "Matched single select field"); - select.model.set("value", { - values: [ - { id: "id0", src: "hda" }, - { id: "id1", src: "hda" }, - ], - }); - assert.ok(select.config[select.model.get("current")].multiple, "Matched multiple field"); - assert.ok( - JSON.stringify(select.value()) == - '{"values":[{"id":"id0","name":"name0","hid":"hid0"},{"id":"id1","name":"name1","hid":"hid1"}],"batch":true}', - "Checking multiple values" - ); - select.model.set("value", { values: [{ id: "id2", src: "hdca" }] }); - assert.ok(select.config[select.model.get("current")].src == "hdca", "Matched collection field"); - assert.ok( - JSON.stringify(select.value()) == '{"values":[{"id":"id2","name":"name2","hid":"hid2"}],"batch":true}', - "Checking collection value" - ); - - select = new SelectContent.View({}); - $("body").prepend(select.$el); - var _testEmptySelect = function (tag, txt_extension, txt_label) { - var field = select.fields[tag == "first" ? 0 : select.fields.length - 1]; - select.$(".ui-select:" + tag); - assert.ok(field.data[0].value == "__null__", tag + " option has correct empty value."); - assert.ok( - field.data[0].label == "No " + txt_extension + txt_label + " available.", - tag + " option has correct empty label." - ); - }; - - var labels = select.model.get("src_labels"); - _testEmptySelect("first", "", labels.hda); - _testEmptySelect("last", "", labels.hdca); - select.model.set("extensions", ["txt", "bam"]); - _testEmptySelect("first", "txt or bam ", labels.hda); - _testEmptySelect("last", "txt or bam ", labels.hdca); - select.model.set("extensions", ["txt"]); - _testEmptySelect("first", "txt ", labels.hda); - _testEmptySelect("last", "txt ", labels.hdca); -}); diff --git a/client/tests/qunit/tests/utils_tests.js b/client/tests/qunit/tests/utils_tests.js deleted file mode 100644 index da57e48b6c6..00000000000 --- a/client/tests/qunit/tests/utils_tests.js +++ /dev/null @@ -1,26 +0,0 @@ -/* global QUnit */ -import testApp from "../test-app"; -import Utils from "utils/utils"; - -QUnit.module("Utils test", { - beforeEach: function () { - testApp.create(); - }, - afterEach: function () { - testApp.destroy(); - }, -}); - -QUnit.test("isEmpty", function (assert) { - assert.ok(Utils.isEmpty([]), "Empty array"); - assert.ok(Utils.isEmpty(["data", undefined]), "Array contains `undefined`"); - assert.ok(Utils.isEmpty(["data", null]), "Array contains `null`"); - assert.ok(Utils.isEmpty(["data", "__null__"]), "Array contains `__null__`"); - assert.ok(Utils.isEmpty(["data", "__undefined__"]), "Array contains `__undefined__`"); - assert.ok(Utils.isEmpty(null), "Array is null"); - assert.ok(Utils.isEmpty("__null__"), "Array is __null__"); - assert.ok(Utils.isEmpty("__undefined__"), "Array is __undefined__"); - assert.ok(!Utils.isEmpty(["data"]), "Array contains `data`"); - assert.ok(!Utils.isEmpty(1), "Value is int"); - assert.ok(!Utils.isEmpty(0), "Value is zero"); -}); diff --git a/client/tests/qunit/test-data/bootstrapped.js b/client/tests/test-data/bootstrapped.js similarity index 100% rename from client/tests/qunit/test-data/bootstrapped.js rename to client/tests/test-data/bootstrapped.js diff --git a/client/tests/qunit/test-data/json/datatypes.json b/client/tests/test-data/json/datatypes.json similarity index 100% rename from client/tests/qunit/test-data/json/datatypes.json rename to client/tests/test-data/json/datatypes.json diff --git a/client/tests/qunit/test-data/json/datatypes.mapping.json b/client/tests/test-data/json/datatypes.mapping.json similarity index 100% rename from client/tests/qunit/test-data/json/datatypes.mapping.json rename to client/tests/test-data/json/datatypes.mapping.json diff --git a/client/tests/qunit/test-data/paired-collection-creator.data.js b/client/tests/test-data/paired-collection-creator.data.js similarity index 100% rename from client/tests/qunit/test-data/paired-collection-creator.data.js rename to client/tests/test-data/paired-collection-creator.data.js diff --git a/client/webpack.config.js b/client/webpack.config.js index f9493e6ec7c..b749fbe4a7d 100644 --- a/client/webpack.config.js +++ b/client/webpack.config.js @@ -7,6 +7,7 @@ const CssMinimizerPlugin = require("css-minimizer-webpack-plugin"); const DuplicatePackageCheckerPlugin = require("@cerner/duplicate-package-checker-webpack-plugin"); const { DumpMetaPlugin } = require("dumpmeta-webpack-plugin"); const TsconfigPathsPlugin = require("tsconfig-paths-webpack-plugin"); +const TerserPlugin = require("terser-webpack-plugin"); const scriptsBase = path.join(__dirname, "src"); const testsBase = path.join(__dirname, "tests"); @@ -32,6 +33,27 @@ module.exports = (env = {}, argv = {}) => { // environment name based on -d, -p, webpack flag const targetEnv = process.env.NODE_ENV == "production" || argv.mode == "production" ? "production" : "development"; + let minimizations = {}; + if (targetEnv == "production") { + minimizations = { + minimize: true, + minimizer: [ + new TerserPlugin({ + terserOptions: { + compress: { + drop_console: true, + }, + }, + }), + new CssMinimizerPlugin(), + ], + }; + } else { + minimizations = { + minimize: false, + }; + } + const buildconfig = { mode: targetEnv, entry: { @@ -84,8 +106,7 @@ module.exports = (env = {}, argv = {}) => { }, }, }, - minimize: true, - minimizer: [`...`, new CssMinimizerPlugin()], + ...minimizations, }, module: { rules: [ @@ -272,8 +293,8 @@ module.exports = (env = {}, argv = {}) => { }, }; - if (process.env.GXY_BUILD_SOURCEMAPS || buildconfig.mode == "development") { - buildconfig.devtool = "eval-cheap-source-map"; + if (process.env.GXY_BUILD_SOURCEMAPS) { + buildconfig.devtool = "source-map"; } return buildconfig; diff --git a/client/yarn.lock b/client/yarn.lock index b510fcdc084..024f7c381b6 100644 --- a/client/yarn.lock +++ b/client/yarn.lock @@ -1405,11 +1405,6 @@ "@citation-js/name" "^0.4.2" wikidata-sdk "^8.0.0" -"@colors/colors@1.5.0": - version "1.5.0" - resolved "https://registry.npmjs.org/@colors/colors/-/colors-1.5.0.tgz" - integrity sha512-ooWCrlZP11i8GImSjTHYHLkvFDP48nS4+204nGb1RiX/WXYHmJA2III9/e2DWVabCESdW7hBAEzHRqUn9OUVvQ== - "@discoveryjs/json-ext@^0.5.0": version "0.5.7" resolved "https://registry.npmjs.org/@discoveryjs/json-ext/-/json-ext-0.5.7.tgz" @@ -2023,11 +2018,6 @@ resolved "https://registry.npmjs.org/@types/circular-json/-/circular-json-0.4.0.tgz" integrity sha512-7+kYB7x5a7nFWW1YPBh3KxhwKfiaI4PbZ1RvzBU91LZy7lWJO822CI+pqzSre/DZ7KsCuMKdHnLHHFu8AyXbQg== -"@types/component-emitter@^1.2.10": - version "1.2.11" - resolved "https://registry.npmjs.org/@types/component-emitter/-/component-emitter-1.2.11.tgz" - integrity sha512-SRXjM+tfsSlA9VuG8hGO2nft2p8zjXCK1VcC6N4NXbBbYbSia9kzCChYQajIjzIqOOOuh5Ock6MmV2oux4jDZQ== - "@types/connect-history-api-fallback@^1.3.5": version "1.3.5" resolved "https://registry.npmjs.org/@types/connect-history-api-fallback/-/connect-history-api-fallback-1.3.5.tgz" @@ -2043,16 +2033,6 @@ dependencies: "@types/node" "*" -"@types/cookie@^0.4.1": - 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