From 5f635bda100d7d8f93564c442c5f2d354ae453d0 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Bj=C3=B6rn=20Gr=C3=BCning?= <bjoern@gruenings.eu>
Date: Sun, 17 Sep 2017 00:54:33 +0200
Subject: [PATCH 1/2] remove .git and .hg from recursive file search

---
 lib/galaxy/tools/loader_directory.py | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/lib/galaxy/tools/loader_directory.py b/lib/galaxy/tools/loader_directory.py
index 642f3d5ca9a..b86558f24bb 100644
--- a/lib/galaxy/tools/loader_directory.py
+++ b/lib/galaxy/tools/loader_directory.py
@@ -22,6 +22,7 @@ TOOL_REGEX = re.compile(r"<tool\s")
 
 YAML_EXTENSIONS = [".yaml", ".yml", ".json"]
 CWL_EXTENSIONS = YAML_EXTENSIONS + [".cwl"]
+EXCLUDE_WALK_DIRS = ['.hg', '.git']
 
 
 def load_exception_handler(path, exc_info):
@@ -264,6 +265,8 @@ def _find_files(directory, pattern='*'):
 
     matches = []
     for root, dirnames, filenames in os.walk(directory):
+        # exclude some directories (like .hg) from traversing
+        dirnames[:] = [dir for dir in dirnames if dir not in EXCLUDE_WALK_DIRS]
         for filename in filenames:
             full_path = os.path.join(root, filename)
             if fnmatch.filter([full_path], pattern):

From cfb0d06575dc7523a8f7496e930b6c530e341a5c Mon Sep 17 00:00:00 2001
From: Eric Rasche <hxr@hx42.org>
Date: Mon, 18 Sep 2017 11:51:30 +0200
Subject: [PATCH 2/2] Exclude venv

---
 lib/galaxy/tools/loader_directory.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/lib/galaxy/tools/loader_directory.py b/lib/galaxy/tools/loader_directory.py
index b86558f24bb..146afd5de7c 100644
--- a/lib/galaxy/tools/loader_directory.py
+++ b/lib/galaxy/tools/loader_directory.py
@@ -22,7 +22,7 @@ TOOL_REGEX = re.compile(r"<tool\s")
 
 YAML_EXTENSIONS = [".yaml", ".yml", ".json"]
 CWL_EXTENSIONS = YAML_EXTENSIONS + [".cwl"]
-EXCLUDE_WALK_DIRS = ['.hg', '.git']
+EXCLUDE_WALK_DIRS = ['.hg', '.git', '.venv']
 
 
 def load_exception_handler(path, exc_info):