diff --git a/client/package.json b/client/package.json
index b251894d0e3..67298a19738 100644
--- a/client/package.json
+++ b/client/package.json
@@ -90,7 +90,7 @@
     "markdown-it-regexp": "^0.4.0",
     "monaco-editor": "^0.52.2",
     "monaco-editor-webpack-plugin": "^7.1.0",
-    "monaco-yaml": "^5.2.3",
+    "monaco-yaml": "^5.4.0",
     "object-hash": "^3.0.0",
     "openapi-fetch": "^0.10.6",
     "pinia": "^2.1.7",
diff --git a/client/src/api/schema/schema.ts b/client/src/api/schema/schema.ts
index 47d75bb1a3d..a61861be3ea 100644
--- a/client/src/api/schema/schema.ts
+++ b/client/src/api/schema/schema.ts
@@ -6617,10 +6617,14 @@ export interface components {
             is_dynamic: boolean;
             /** Label */
             label?: string | null;
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string;
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean;
@@ -6771,10 +6775,14 @@ export interface components {
             is_dynamic: boolean;
             /** Label */
             label?: string | null;
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string;
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean;
@@ -7149,10 +7157,14 @@ export interface components {
             is_dynamic: boolean;
             /** Label */
             label?: string | null;
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string;
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean;
@@ -7341,10 +7353,14 @@ export interface components {
             is_dynamic: boolean;
             /** Label */
             label?: string | null;
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string;
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean;
@@ -7384,10 +7400,14 @@ export interface components {
             is_dynamic: boolean;
             /** Label */
             label?: string | null;
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string;
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean;
@@ -8439,7 +8459,10 @@ export interface components {
         };
         /** CwlBooleanParameterModel */
         CwlBooleanParameterModel: {
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string;
             /**
              * Parameter Type
@@ -8466,10 +8489,14 @@ export interface components {
             is_dynamic: boolean;
             /** Label */
             label?: string | null;
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string;
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean;
@@ -8498,10 +8525,14 @@ export interface components {
             is_dynamic: boolean;
             /** Label */
             label?: string | null;
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string;
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean;
@@ -8514,7 +8545,10 @@ export interface components {
         };
         /** CwlFloatParameterModel */
         CwlFloatParameterModel: {
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string;
             /**
              * Parameter Type
@@ -8525,7 +8559,10 @@ export interface components {
         };
         /** CwlIntegerParameterModel */
         CwlIntegerParameterModel: {
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string;
             /**
              * Parameter Type
@@ -8536,7 +8573,10 @@ export interface components {
         };
         /** CwlNullParameterModel */
         CwlNullParameterModel: {
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string;
             /**
              * Parameter Type
@@ -8547,7 +8587,10 @@ export interface components {
         };
         /** CwlStringParameterModel */
         CwlStringParameterModel: {
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string;
             /**
              * Parameter Type
@@ -8558,7 +8601,10 @@ export interface components {
         };
         /** CwlUnionParameterModel */
         "CwlUnionParameterModel-Input": {
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string;
             /**
              * Parameter Type
@@ -8580,7 +8626,10 @@ export interface components {
         };
         /** CwlUnionParameterModel */
         "CwlUnionParameterModel-Output": {
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string;
             /**
              * Parameter Type
@@ -8714,10 +8763,14 @@ export interface components {
             is_dynamic: boolean;
             /** Label */
             label?: string | null;
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string;
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean;
@@ -8757,10 +8810,14 @@ export interface components {
             label?: string | null;
             /** Multiple */
             multiple: boolean;
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string;
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean;
@@ -8840,6 +8897,7 @@ export interface components {
             argument?: string | null;
             /**
              * Extensions
+             * @description Limit inputs to datasets with these extensions. Use 'data' to allow all input datasets.
              * @default [
              *       "data"
              *     ]
@@ -8865,13 +8923,18 @@ export interface components {
             min?: number | null;
             /**
              * Multiple
+             * @description Allow multiple values to be selected.
              * @default false
              */
             multiple: boolean;
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string;
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean;
@@ -9574,10 +9637,14 @@ export interface components {
             is_dynamic: boolean;
             /** Label */
             label?: string | null;
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string;
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean;
@@ -9693,10 +9760,14 @@ export interface components {
             label?: string | null;
             /** Multiple */
             multiple: boolean;
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string;
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean;
@@ -9739,10 +9810,14 @@ export interface components {
             label?: string | null;
             /** Multiple */
             multiple: boolean;
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string;
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean;
@@ -10729,10 +10804,14 @@ export interface components {
             max?: number | null;
             /** Min */
             min?: number | null;
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string;
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean;
@@ -10945,10 +11024,14 @@ export interface components {
             label?: string | null;
             /** Multiple */
             multiple: boolean;
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string;
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean;
@@ -11091,10 +11174,14 @@ export interface components {
             label?: string | null;
             /** Multiple */
             multiple: boolean;
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string;
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean;
@@ -12722,10 +12809,14 @@ export interface components {
             is_dynamic: boolean;
             /** Label */
             label?: string | null;
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string;
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean;
@@ -13200,7 +13291,10 @@ export interface components {
         };
         /** IncomingToolOutputCollection */
         "IncomingToolOutputCollection-Input": {
-            /** Hidden */
+            /**
+             * Hidden
+             * @description If true, the output will not be shown in the history.
+             */
             hidden?: boolean | null;
             /** Label */
             label?: string | null;
@@ -13218,7 +13312,10 @@ export interface components {
         };
         /** IncomingToolOutputCollection */
         "IncomingToolOutputCollection-Output": {
-            /** Hidden */
+            /**
+             * Hidden
+             * @description If true, the output will not be shown in the history.
+             */
             hidden?: boolean | null;
             /** Label */
             label?: string | null;
@@ -13252,7 +13349,10 @@ export interface components {
             format_source?: string | null;
             /** From Work Dir */
             from_work_dir?: string | null;
-            /** Hidden */
+            /**
+             * Hidden
+             * @description If true, the output will not be shown in the history.
+             */
             hidden?: boolean | null;
             /** Label */
             label?: string | null;
@@ -13533,7 +13633,10 @@ export interface components {
             max?: number | null;
             /** Min */
             min?: number | null;
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string;
             /** Optional */
             optional: boolean;
@@ -17531,10 +17634,14 @@ export interface components {
             max?: number | null;
             /** Min */
             min?: number | null;
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string;
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean;
@@ -17602,10 +17709,14 @@ export interface components {
             max?: number | null;
             /** Min */
             min?: number | null;
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string;
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean;
@@ -17813,10 +17924,14 @@ export interface components {
             is_dynamic: boolean;
             /** Label */
             label?: string | null;
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string;
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean;
@@ -17872,10 +17987,14 @@ export interface components {
             is_dynamic: boolean;
             /** Label */
             label?: string | null;
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string;
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean;
@@ -17939,10 +18058,14 @@ export interface components {
             is_dynamic: boolean;
             /** Label */
             label?: string | null;
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string;
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean;
@@ -18011,10 +18134,14 @@ export interface components {
              * @default false
              */
             multiple: boolean;
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string;
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean;
@@ -19116,10 +19243,14 @@ export interface components {
             is_dynamic: boolean;
             /** Label */
             label?: string | null;
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string;
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean;
@@ -19229,7 +19360,10 @@ export interface components {
         };
         /** ToolOutputBoolean */
         ToolOutputBoolean: {
-            /** Hidden */
+            /**
+             * Hidden
+             * @description If true, the output will not be shown in the history.
+             */
             hidden: unknown;
             /** Label */
             label?: string | null;
@@ -19264,7 +19398,10 @@ export interface components {
         };
         /** ToolOutputFloat */
         ToolOutputFloat: {
-            /** Hidden */
+            /**
+             * Hidden
+             * @description If true, the output will not be shown in the history.
+             */
             hidden: unknown;
             /** Label */
             label?: string | null;
@@ -19281,7 +19418,10 @@ export interface components {
         };
         /** ToolOutputInteger */
         ToolOutputInteger: {
-            /** Hidden */
+            /**
+             * Hidden
+             * @description If true, the output will not be shown in the history.
+             */
             hidden: unknown;
             /** Label */
             label?: string | null;
@@ -19298,7 +19438,10 @@ export interface components {
         };
         /** ToolOutputText */
         ToolOutputText: {
-            /** Hidden */
+            /**
+             * Hidden
+             * @description If true, the output will not be shown in the history.
+             */
             hidden: unknown;
             /** Label */
             label?: string | null;
@@ -20392,25 +20535,41 @@ export interface components {
              * @enum {string}
              */
             class: "GalaxyUserTool";
-            /** Container */
+            /**
+             * Container
+             * @description Container image to use for this tool.
+             */
             container: string;
-            /** Description */
+            /**
+             * Description
+             * @description The description is displayed in the tool menu immediately following the hyperlink for the tool.
+             */
             description?: string | null;
             /** Edam Operations */
             edam_operations?: string[] | null;
             /** Edam Topics */
             edam_topics?: string[] | null;
+            /** @description Help text shown below the tool interface. */
             help?: components["schemas"]["HelpContent"] | null;
-            /** Id */
-            id: string | null;
+            /**
+             * Id
+             * @description Unique identifier for the tool. Should be all lower-case and should not include whitespace.
+             */
+            id: string;
             /**
              * Inputs
              * @default []
              */
             inputs: components["schemas"]["GalaxyToolParameterModel-Input"][];
-            /** License */
+            /**
+             * License
+             * @description A full URI or a a short [SPDX](https://spdx.org/licenses/) identifier for a license for this tool wrapper. The tool wrapper license can be independent of the underlying tool license. This license covers the tool yaml and associated scripts shipped with the tool.
+             */
             license?: string | null;
-            /** Name */
+            /**
+             * Name
+             * @description The name of the tool, displayed in the tool menu. This is not the same as the tool id, which is a unique identifier for the tool.
+             */
             name: string;
             /**
              * Outputs
@@ -20426,6 +20585,7 @@ export interface components {
             )[];
             /**
              * Requirements
+             * @description A list of requirements needed to execute this tool. These can be javascript expressions, resource requirements or container images.
              * @default []
              */
             requirements:
@@ -20440,8 +20600,11 @@ export interface components {
              * @description A string that contains the command to be executed. Parameters can be referenced inside $().
              */
             shell_command: string;
-            /** Version */
-            version: string | null;
+            /**
+             * Version
+             * @description Version for the tool.
+             */
+            version: string;
             /** Xrefs */
             xrefs?: components["schemas"]["XrefDict"][] | null;
         };
@@ -20454,25 +20617,41 @@ export interface components {
              * @constant
              */
             class: "GalaxyUserTool";
-            /** Container */
+            /**
+             * Container
+             * @description Container image to use for this tool.
+             */
             container: string;
-            /** Description */
+            /**
+             * Description
+             * @description The description is displayed in the tool menu immediately following the hyperlink for the tool.
+             */
             description?: string | null;
             /** Edam Operations */
             edam_operations?: string[] | null;
             /** Edam Topics */
             edam_topics?: string[] | null;
+            /** @description Help text shown below the tool interface. */
             help?: components["schemas"]["HelpContent"] | null;
-            /** Id */
-            id: string | null;
+            /**
+             * Id
+             * @description Unique identifier for the tool. Should be all lower-case and should not include whitespace.
+             */
+            id: string;
             /**
              * Inputs
              * @default []
              */
             inputs: components["schemas"]["GalaxyToolParameterModel-Output"][];
-            /** License */
+            /**
+             * License
+             * @description A full URI or a a short [SPDX](https://spdx.org/licenses/) identifier for a license for this tool wrapper. The tool wrapper license can be independent of the underlying tool license. This license covers the tool yaml and associated scripts shipped with the tool.
+             */
             license?: string | null;
-            /** Name */
+            /**
+             * Name
+             * @description The name of the tool, displayed in the tool menu. This is not the same as the tool id, which is a unique identifier for the tool.
+             */
             name: string;
             /**
              * Outputs
@@ -20488,6 +20667,7 @@ export interface components {
             )[];
             /**
              * Requirements
+             * @description A list of requirements needed to execute this tool. These can be javascript expressions, resource requirements or container images.
              * @default []
              */
             requirements:
@@ -20502,8 +20682,11 @@ export interface components {
              * @description A string that contains the command to be executed. Parameters can be referenced inside $().
              */
             shell_command: string;
-            /** Version */
-            version: string | null;
+            /**
+             * Version
+             * @description Version for the tool.
+             */
+            version: string;
             /** Xrefs */
             xrefs?: components["schemas"]["XrefDict"][] | null;
         };
diff --git a/client/src/components/Collections/common/CollectionEditView.vue b/client/src/components/Collections/common/CollectionEditView.vue
index dbe6ba32865..9666ef9c241 100644
--- a/client/src/components/Collections/common/CollectionEditView.vue
+++ b/client/src/components/Collections/common/CollectionEditView.vue
@@ -216,7 +216,7 @@ async function saveAttrs() {
 
 <template>
     <div aria-labelledby="collection-edit-view-heading">
-        <Heading id="dataset-attributes-heading" h1 separator inline size="xl">
+        <Heading id="dataset-attributes-heading" h1 separator inline size="lg">
             {{ localize("Edit Collection Attributes") }}
         </Heading>
 
diff --git a/client/src/components/Common/BreadcrumbHeading.vue b/client/src/components/Common/BreadcrumbHeading.vue
index 55a6db9f672..f944144e7f3 100644
--- a/client/src/components/Common/BreadcrumbHeading.vue
+++ b/client/src/components/Common/BreadcrumbHeading.vue
@@ -15,7 +15,7 @@ const props = defineProps<Props>();
 
 <template>
     <div class="breadcrumb-heading mb-2">
-        <Heading h1 separator inline size="md" class="breadcrumb-heading-header mr-2 mb-0">
+        <Heading h1 separator inline size="lg" class="breadcrumb-heading-header mr-2 mb-0">
             <template v-for="(item, index) in props.items">
                 <RouterLink
                     v-if="item.to"
diff --git a/client/src/components/DatasetInformation/DatasetAttributes.vue b/client/src/components/DatasetInformation/DatasetAttributes.vue
index ee37a89164b..61dc0a4ad78 100644
--- a/client/src/components/DatasetInformation/DatasetAttributes.vue
+++ b/client/src/components/DatasetInformation/DatasetAttributes.vue
@@ -92,7 +92,7 @@ onMounted(async () => {
 
 <template>
     <div aria-labelledby="dataset-attributes-heading">
-        <Heading id="dataset-attributes-heading" h1 separator inline size="xl">
+        <Heading id="dataset-attributes-heading" h1 separator inline size="lg">
             {{ localize("Edit Dataset Attributes") }}
         </Heading>
 
diff --git a/client/src/components/Grid/GridHistory.vue b/client/src/components/Grid/GridHistory.vue
index 982db6f8ce1..533411f1b44 100644
--- a/client/src/components/Grid/GridHistory.vue
+++ b/client/src/components/Grid/GridHistory.vue
@@ -32,7 +32,7 @@ const props = withDefaults(defineProps<Props>(), {
 <template>
     <div class="d-flex flex-column">
         <div class="d-flex">
-            <Heading h1 separator inline size="xl" class="flex-grow-1 mb-2">Histories</Heading>
+            <Heading h1 separator inline size="lg" class="flex-grow-1 mb-2">Histories</Heading>
             <div v-if="!userStore.isAnonymous">
                 <GButton
                     size="small"
diff --git a/client/src/components/Grid/GridInvocation.vue b/client/src/components/Grid/GridInvocation.vue
index e53b74340da..df0d91f6f37 100644
--- a/client/src/components/Grid/GridInvocation.vue
+++ b/client/src/components/Grid/GridInvocation.vue
@@ -101,7 +101,7 @@ function refreshTable() {
 <template>
     <div class="d-flex flex-column">
         <div v-if="forStoredWorkflow || forHistory" class="d-flex">
-            <Heading h1 separator inline truncate size="xl" class="flex-grow-1 mb-2">{{ effectiveTitle }}</Heading>
+            <Heading h1 separator inline truncate size="lg" class="flex-grow-1 mb-2">{{ effectiveTitle }}</Heading>
         </div>
         <GridList
             v-if="!currentUser?.isAnonymous && currentUser?.id"
diff --git a/client/src/components/Grid/GridList.vue b/client/src/components/Grid/GridList.vue
index 84d9d0ef8aa..2062733d566 100644
--- a/client/src/components/Grid/GridList.vue
+++ b/client/src/components/Grid/GridList.vue
@@ -337,7 +337,7 @@ watch(operationMessage, () => {
         <BAlert v-if="!!operationMessage" :variant="operationStatus" fade show>{{ operationMessage }}</BAlert>
         <div v-if="!embedded || filterClass" class="grid-header d-flex justify-content-between pb-2 flex-column">
             <div v-if="!embedded" class="d-flex">
-                <Heading h1 separator inline size="xl" class="flex-grow-1 m-0" data-description="grid title">
+                <Heading h1 separator inline size="lg" class="flex-grow-1 m-0" data-description="grid title">
                     <span v-localize>{{ gridConfig.title }}</span>
                 </Heading>
                 <div class="d-flex justify-content-between">
diff --git a/client/src/components/Grid/GridPage.vue b/client/src/components/Grid/GridPage.vue
index a1df8f13d4a..505b6b9b496 100644
--- a/client/src/components/Grid/GridPage.vue
+++ b/client/src/components/Grid/GridPage.vue
@@ -29,7 +29,7 @@ const props = withDefaults(defineProps<Props>(), {
 <template>
     <div class="d-flex flex-column">
         <div class="d-flex">
-            <Heading h1 separator inline size="xl" class="flex-grow-1 mb-2">Pages</Heading>
+            <Heading h1 separator inline size="lg" class="flex-grow-1 mb-2">Pages</Heading>
             <div v-if="!userStore.isAnonymous">
                 <GButton id="page-create" size="small" outline color="blue" to="/pages/create">
                     <Icon :icon="faPlus" />
diff --git a/client/src/components/Grid/GridVisualization.vue b/client/src/components/Grid/GridVisualization.vue
index 28cc897a75f..184d985618b 100644
--- a/client/src/components/Grid/GridVisualization.vue
+++ b/client/src/components/Grid/GridVisualization.vue
@@ -28,7 +28,7 @@ withDefaults(defineProps<Props>(), {
 <template>
     <div class="d-flex flex-column">
         <div class="d-flex">
-            <Heading h1 separator inline size="xl" class="flex-grow-1 mb-2">Visualizations</Heading>
+            <Heading h1 separator inline size="lg" class="flex-grow-1 mb-2">Visualizations</Heading>
         </div>
         <BNav pills justified class="mb-2">
             <BNavItem
diff --git a/client/src/components/History/HistoryAccessibility.vue b/client/src/components/History/HistoryAccessibility.vue
index 9e0c792ab7b..cc0e21c9ebb 100644
--- a/client/src/components/History/HistoryAccessibility.vue
+++ b/client/src/components/History/HistoryAccessibility.vue
@@ -38,7 +38,7 @@ function openSharingTab() {
 
 <template>
     <div aria-labelledby="history-sharing-heading">
-        <Heading id="history-sharing-heading" h1 separator inline truncate size="xl">
+        <Heading id="history-sharing-heading" h1 separator inline truncate size="lg">
             {{ localize("Manage History") }}
             "{{ historyStore.getHistoryNameById(props.historyId) }}"
         </Heading>
diff --git a/client/src/components/History/Multiple/MultipleView.vue b/client/src/components/History/Multiple/MultipleView.vue
index 6555bc7ea40..2a2c1357cdf 100644
--- a/client/src/components/History/Multiple/MultipleView.vue
+++ b/client/src/components/History/Multiple/MultipleView.vue
@@ -114,7 +114,7 @@ function showRecent() {
 <template>
     <div v-if="currentUser" class="d-flex flex-column">
         <div class="d-flex">
-            <Heading h1 separator inline size="xl" class="flex-grow-1 mb-2">History Multiview</Heading>
+            <Heading h1 separator inline size="lg" class="flex-grow-1 mb-2">History Multiview</Heading>
 
             <div class="d-flex justify-content-between">
                 <div>
diff --git a/client/src/components/InteractiveTools/InteractiveTools.vue b/client/src/components/InteractiveTools/InteractiveTools.vue
index 679342025de..c9c32d80be0 100644
--- a/client/src/components/InteractiveTools/InteractiveTools.vue
+++ b/client/src/components/InteractiveTools/InteractiveTools.vue
@@ -7,6 +7,7 @@ import { useRouter } from "vue-router/composables";
 
 import { useInteractiveToolsStore } from "@/stores/interactiveToolsStore";
 
+import Heading from "@/components/Common/Heading.vue";
 import UtcDate from "@/components/UtcDate.vue";
 
 const filter = ref("");
@@ -83,7 +84,7 @@ onMounted(() => {
 <template>
     <div aria-labelledby="interactive-tools-heading">
         <b-alert v-for="(message, index) in messages" :key="index" :show="3" variant="danger">{{ message }}</b-alert>
-        <h1 id="interactive-tools-heading" class="h-lg">Active Interactive Tools</h1>
+        <Heading id="interactive-tools-heading" h1 separator inline size="lg">Active Interactive Tools</Heading>
         <b-row class="mb-3">
             <b-col cols="6">
                 <b-input
diff --git a/client/src/components/Notifications/NotificationsList.vue b/client/src/components/Notifications/NotificationsList.vue
index e04d210f05d..b38a8854754 100644
--- a/client/src/components/Notifications/NotificationsList.vue
+++ b/client/src/components/Notifications/NotificationsList.vue
@@ -76,11 +76,16 @@ function togglePreferences() {
 <template>
     <div aria-labelledby="notifications-list" class="notifications-list-container">
         <div class="notifications-list-header">
-            <Heading id="notifications-title" h1 separator inline size="xl" class="flex-grow-1 mb-2">
+            <Heading id="notifications-title" h1 separator inline size="lg" class="flex-grow-1 mb-2">
                 Notifications
             </Heading>
 
-            <BButton class="mb-2" variant="outline-primary" :pressed="preferencesOpen" @click="togglePreferences">
+            <BButton
+                class="mb-2"
+                size="sm"
+                variant="outline-primary"
+                :pressed="preferencesOpen"
+                @click="togglePreferences">
                 <FontAwesomeIcon :icon="faCog" />
                 Notifications preferences
             </BButton>
diff --git a/client/src/components/Tool/CustomToolEditor.vue b/client/src/components/Tool/CustomToolEditor.vue
index bbe470430c4..0220bd41c41 100644
--- a/client/src/components/Tool/CustomToolEditor.vue
+++ b/client/src/components/Tool/CustomToolEditor.vue
@@ -106,7 +106,7 @@ async function saveTool() {
 <template>
     <div>
         <div class="d-flex flex-gapx-1">
-            <Heading h1 separator inline size="xl" class="flex-grow-1 mb-2">Tool Editor</Heading>
+            <Heading h1 separator inline size="lg" class="flex-grow-1 mb-2">Tool Editor</Heading>
             <b-button variant="primary" size="m" @click="saveTool">Save</b-button>
         </div>
         <VueMonacoEditor
diff --git a/client/src/components/Tool/ToolSourceSchema.json b/client/src/components/Tool/ToolSourceSchema.json
index d2526793af7..10dddc037bd 100644
--- a/client/src/components/Tool/ToolSourceSchema.json
+++ b/client/src/components/Tool/ToolSourceSchema.json
@@ -1 +1 @@
-{"$defs": {"BaseUrlParameterModel": {"properties": {"name": {"title": "Name", "type": "string"}, "parameter_type": {"const": "gx_baseurl", "default": "gx_baseurl", "title": "Parameter Type", "type": "string"}, "hidden": {"default": false, "title": "Hidden", "type": "boolean"}, "label": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "help": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Help"}, "argument": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Argument"}, "is_dynamic": {"default": false, "title": "Is Dynamic", "type": "boolean"}, "optional": {"default": false, "title": "Optional", "type": "boolean"}, "type": {"const": "baseurl", "title": "Type", "type": "string"}}, "required": ["name", "type"], "title": "BaseUrlParameterModel", "type": "object"}, "BooleanParameterModel": {"properties": {"name": {"title": "Name", "type": "string"}, "parameter_type": {"const": "gx_boolean", "default": "gx_boolean", "title": "Parameter Type", "type": "string"}, "hidden": {"default": false, "title": "Hidden", "type": "boolean"}, "label": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "help": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Help"}, "argument": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Argument"}, "is_dynamic": {"default": false, "title": "Is Dynamic", "type": "boolean"}, "optional": {"default": false, "title": "Optional", "type": "boolean"}, "type": {"const": "boolean", "title": "Type", "type": "string"}, "value": {"anyOf": [{"type": "boolean"}, {"type": "null"}], "default": false, "title": "Value"}, "truevalue": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Truevalue"}, "falsevalue": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Falsevalue"}}, "required": ["name", "type"], "title": "BooleanParameterModel", "type": "object"}, "Citation": {"properties": {"type": {"title": "Type", "type": "string"}, "content": {"title": "Content", "type": "string"}}, "required": ["type", "content"], "title": "Citation", "type": "object"}, "ColorParameterModel": {"properties": {"name": {"title": "Name", "type": "string"}, "parameter_type": {"const": "gx_color", "default": "gx_color", "title": "Parameter Type", "type": "string"}, "hidden": {"default": false, "title": "Hidden", "type": "boolean"}, "label": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "help": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Help"}, "argument": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Argument"}, "is_dynamic": {"default": false, "title": "Is Dynamic", "type": "boolean"}, "optional": {"default": false, "title": "Optional", "type": "boolean"}, "type": {"const": "color", "title": "Type", "type": "string"}, "value": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Value"}}, "required": ["name", "type"], "title": "ColorParameterModel", "type": "object"}, "ConditionalParameterModel": {"properties": {"name": {"title": "Name", "type": "string"}, "parameter_type": {"const": "gx_conditional", "default": "gx_conditional", "title": "Parameter Type", "type": "string"}, "hidden": {"default": false, "title": "Hidden", "type": "boolean"}, "label": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "help": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Help"}, "argument": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Argument"}, "is_dynamic": {"default": false, "title": "Is Dynamic", "type": "boolean"}, "optional": {"default": false, "title": "Optional", "type": "boolean"}, "type": {"const": "conditional", "title": "Type", "type": "string"}, "test_parameter": {"anyOf": [{"$ref": "#/$defs/BooleanParameterModel"}, {"$ref": "#/$defs/SelectParameterModel"}], "title": "Test Parameter"}, "whens": {"items": {"$ref": "#/$defs/ConditionalWhen"}, "title": "Whens", "type": "array"}}, "required": ["name", "type", "test_parameter", "whens"], "title": "ConditionalParameterModel", "type": "object"}, "ConditionalWhen": {"additionalProperties": false, "properties": {"discriminator": {"anyOf": [{"type": "boolean"}, {"type": "string"}], "title": "Discriminator"}, "parameters": {"items": {"anyOf": [{"$ref": "#/$defs/CwlIntegerParameterModel"}, {"$ref": "#/$defs/CwlFloatParameterModel"}, {"$ref": "#/$defs/CwlStringParameterModel"}, {"$ref": "#/$defs/CwlBooleanParameterModel"}, {"$ref": "#/$defs/CwlNullParameterModel"}, {"$ref": "#/$defs/CwlFileParameterModel"}, {"$ref": "#/$defs/CwlDirectoryParameterModel"}, {"$ref": "#/$defs/CwlUnionParameterModel"}, {"$ref": "#/$defs/TextParameterModel"}, {"$ref": "#/$defs/IntegerParameterModel"}, {"$ref": "#/$defs/FloatParameterModel"}, {"$ref": "#/$defs/BooleanParameterModel"}, {"$ref": "#/$defs/HiddenParameterModel"}, {"$ref": "#/$defs/SelectParameterModel"}, {"$ref": "#/$defs/DataParameterModel"}, {"$ref": "#/$defs/DataCollectionParameterModel"}, {"$ref": "#/$defs/DataColumnParameterModel"}, {"$ref": "#/$defs/DirectoryUriParameterModel"}, {"$ref": "#/$defs/RulesParameterModel"}, {"$ref": "#/$defs/DrillDownParameterModel"}, {"$ref": "#/$defs/GroupTagParameterModel"}, {"$ref": "#/$defs/BaseUrlParameterModel"}, {"$ref": "#/$defs/GenomeBuildParameterModel"}, {"$ref": "#/$defs/ColorParameterModel"}, {"$ref": "#/$defs/ConditionalParameterModel"}, {"$ref": "#/$defs/RepeatParameterModel"}, {"$ref": "#/$defs/SectionParameterModel"}]}, "title": "Parameters", "type": "array"}, "is_default_when": {"title": "Is Default When", "type": "boolean"}}, "required": ["discriminator", "parameters", "is_default_when"], "title": "ConditionalWhen", "type": "object"}, "Container": {"properties": {"type": {"enum": ["docker", "singularity"], "title": "Type", "type": "string"}, "container_id": {"title": "Container Id", "type": "string"}}, "required": ["type", "container_id"], "title": "Container", "type": "object"}, "ContainerRequirement": {"properties": {"type": {"const": "container", "title": "Type", "type": "string"}, "container": {"$ref": "#/$defs/Container"}}, "required": ["type", "container"], "title": "ContainerRequirement", "type": "object"}, "CwlBooleanParameterModel": {"properties": {"name": {"title": "Name", "type": "string"}, "parameter_type": {"const": "cwl_boolean", "default": "cwl_boolean", "title": "Parameter Type", "type": "string"}}, "required": ["name"], "title": "CwlBooleanParameterModel", "type": "object"}, "CwlDirectoryParameterModel": {"properties": {"name": {"title": "Name", "type": "string"}, "parameter_type": {"const": "cwl_directory", "default": "cwl_directory", "title": "Parameter Type", "type": "string"}, "hidden": {"default": false, "title": "Hidden", "type": "boolean"}, "label": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "help": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Help"}, "argument": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Argument"}, "is_dynamic": {"default": false, "title": "Is Dynamic", "type": "boolean"}, "optional": {"default": false, "title": "Optional", "type": "boolean"}}, "required": ["name"], "title": "CwlDirectoryParameterModel", "type": "object"}, "CwlFileParameterModel": {"properties": {"name": {"title": "Name", "type": "string"}, "parameter_type": {"const": "cwl_file", "default": "cwl_file", "title": "Parameter Type", "type": "string"}, "hidden": {"default": false, "title": "Hidden", "type": "boolean"}, "label": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "help": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Help"}, "argument": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Argument"}, "is_dynamic": {"default": false, "title": "Is Dynamic", "type": "boolean"}, "optional": {"default": false, "title": "Optional", "type": "boolean"}}, "required": ["name"], "title": "CwlFileParameterModel", "type": "object"}, "CwlFloatParameterModel": {"properties": {"name": {"title": "Name", "type": "string"}, "parameter_type": {"const": "cwl_float", "default": "cwl_float", "title": "Parameter Type", "type": "string"}}, "required": ["name"], "title": "CwlFloatParameterModel", "type": "object"}, "CwlIntegerParameterModel": {"properties": {"name": {"title": "Name", "type": "string"}, "parameter_type": {"const": "cwl_integer", "default": "cwl_integer", "title": "Parameter Type", "type": "string"}}, "required": ["name"], "title": "CwlIntegerParameterModel", "type": "object"}, "CwlNullParameterModel": {"properties": {"name": {"title": "Name", "type": "string"}, "parameter_type": {"const": "cwl_null", "default": "cwl_null", "title": "Parameter Type", "type": "string"}}, "required": ["name"], "title": "CwlNullParameterModel", "type": "object"}, "CwlStringParameterModel": {"properties": {"name": {"title": "Name", "type": "string"}, "parameter_type": {"const": "cwl_string", "default": "cwl_string", "title": "Parameter Type", "type": "string"}}, "required": ["name"], "title": "CwlStringParameterModel", "type": "object"}, "CwlUnionParameterModel": {"properties": {"name": {"title": "Name", "type": "string"}, "parameter_type": {"const": "cwl_union", "default": "cwl_union", "title": "Parameter Type", "type": "string"}, "parameters": {"items": {"anyOf": [{"$ref": "#/$defs/CwlIntegerParameterModel"}, {"$ref": "#/$defs/CwlFloatParameterModel"}, {"$ref": "#/$defs/CwlStringParameterModel"}, {"$ref": "#/$defs/CwlBooleanParameterModel"}, {"$ref": "#/$defs/CwlNullParameterModel"}, {"$ref": "#/$defs/CwlFileParameterModel"}, {"$ref": "#/$defs/CwlDirectoryParameterModel"}, {"$ref": "#/$defs/CwlUnionParameterModel"}]}, "title": "Parameters", "type": "array"}}, "required": ["name", "parameters"], "title": "CwlUnionParameterModel", "type": "object"}, "DataCollectionParameterModel": {"properties": {"name": {"title": "Name", "type": "string"}, "parameter_type": {"const": "gx_data_collection", "default": "gx_data_collection", "title": "Parameter Type", "type": "string"}, "hidden": {"default": false, "title": "Hidden", "type": "boolean"}, "label": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "help": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Help"}, "argument": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Argument"}, "is_dynamic": {"default": false, "title": "Is Dynamic", "type": "boolean"}, "optional": {"default": false, "title": "Optional", "type": "boolean"}, "type": {"const": "data_collection", "title": "Type", "type": "string"}, "collection_type": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Collection Type"}, "extensions": {"default": ["data"], "items": {"type": "string"}, "title": "Extensions", "type": "array"}, "value": {"anyOf": [{"additionalProperties": true, "type": "object"}, {"type": "null"}], "title": "Value"}}, "required": ["name", "type", "value"], "title": "DataCollectionParameterModel", "type": "object"}, "DataColumnParameterModel": {"properties": {"name": {"title": "Name", "type": "string"}, "parameter_type": {"const": "gx_data_column", "default": "gx_data_column", "title": "Parameter Type", "type": "string"}, "hidden": {"default": false, "title": "Hidden", "type": "boolean"}, "label": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "help": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Help"}, "argument": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Argument"}, "is_dynamic": {"default": false, "title": "Is Dynamic", "type": "boolean"}, "optional": {"default": false, "title": "Optional", "type": "boolean"}, "type": {"const": "data_column", "title": "Type", "type": "string"}, "multiple": {"title": "Multiple", "type": "boolean"}, "value": {"anyOf": [{"type": "integer"}, {"items": {"type": "integer"}, "type": "array"}, {"type": "null"}], "default": null, "title": "Value"}}, "required": ["name", "type", "multiple"], "title": "DataColumnParameterModel", "type": "object"}, "DataParameterModel": {"properties": {"name": {"title": "Name", "type": "string"}, "parameter_type": {"const": "gx_data", "default": "gx_data", "title": "Parameter Type", "type": "string"}, "hidden": {"default": false, "title": "Hidden", "type": "boolean"}, "label": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "help": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Help"}, "argument": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Argument"}, "is_dynamic": {"default": false, "title": "Is Dynamic", "type": "boolean"}, "optional": {"default": false, "title": "Optional", "type": "boolean"}, "type": {"const": "data", "title": "Type", "type": "string"}, "extensions": {"default": ["data"], "items": {"type": "string"}, "title": "Extensions", "type": "array"}, "multiple": {"default": false, "title": "Multiple", "type": "boolean"}, "min": {"anyOf": [{"type": "integer"}, {"type": "null"}], "default": null, "title": "Min"}, "max": {"anyOf": [{"type": "integer"}, {"type": "null"}], "default": null, "title": "Max"}}, "required": ["name", "type"], "title": "DataParameterModel", "type": "object"}, "DirectoryUriParameterModel": {"properties": {"name": {"title": "Name", "type": "string"}, "parameter_type": {"const": "gx_directory_uri", "default": "gx_directory_uri", "title": "Parameter Type", "type": "string"}, "hidden": {"default": false, "title": "Hidden", "type": "boolean"}, "label": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "help": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Help"}, "argument": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Argument"}, "is_dynamic": {"default": false, "title": "Is Dynamic", "type": "boolean"}, "optional": {"default": false, "title": "Optional", "type": "boolean"}, "type": {"const": "directory", "title": "Type", "type": "string"}, "validators": {"default": [], "items": {"anyOf": [{"$ref": "#/$defs/LengthParameterValidatorModel"}, {"$ref": "#/$defs/RegexParameterValidatorModel"}, {"$ref": "#/$defs/ExpressionParameterValidatorModel"}, {"$ref": "#/$defs/EmptyFieldParameterValidatorModel"}]}, "title": "Validators", "type": "array"}}, "required": ["name", "type"], "title": "DirectoryUriParameterModel", "type": "object"}, "DrillDownOptionsDict": {"properties": {"name": {"anyOf": [{"type": "string"}, {"type": "null"}], "title": "Name"}, "value": {"title": "Value", "type": "string"}, "options": {"items": {"$ref": "#/$defs/DrillDownOptionsDict"}, "title": "Options", "type": "array"}, "selected": {"title": "Selected", "type": "boolean"}}, "required": ["name", "value", "options", "selected"], "title": "DrillDownOptionsDict", "type": "object"}, "DrillDownParameterModel": {"properties": {"name": {"title": "Name", "type": "string"}, "parameter_type": {"const": "gx_drill_down", "default": "gx_drill_down", "title": "Parameter Type", "type": "string"}, "hidden": {"default": false, "title": "Hidden", "type": "boolean"}, "label": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "help": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Help"}, "argument": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Argument"}, "is_dynamic": {"default": false, "title": "Is Dynamic", "type": "boolean"}, "optional": {"default": false, "title": "Optional", "type": "boolean"}, "type": {"const": "drill_down", "title": "Type", "type": "string"}, "options": {"anyOf": [{"items": {"$ref": "#/$defs/DrillDownOptionsDict"}, "type": "array"}, {"type": "null"}], "default": null, "title": "Options"}, "multiple": {"title": "Multiple", "type": "boolean"}, "hierarchy": {"enum": ["recurse", "exact"], "title": "Hierarchy", "type": "string"}}, "required": ["name", "type", "multiple", "hierarchy"], "title": "DrillDownParameterModel", "type": "object"}, "EmptyFieldParameterValidatorModel": {"additionalProperties": false, "properties": {"type": {"const": "empty_field", "default": "empty_field", "title": "Type", "type": "string"}, "message": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Message"}, "implicit": {"default": false, "title": "Implicit", "type": "boolean"}, "negate": {"default": false, "title": "Negate", "type": "boolean"}}, "title": "EmptyFieldParameterValidatorModel", "type": "object"}, "ExpressionParameterValidatorModel": {"additionalProperties": false, "description": "Check if a one line python expression given expression evaluates to True.\n\nThe expression is given is the content of the validator tag.", "properties": {"type": {"const": "expression", "default": "expression", "title": "Type", "type": "string"}, "message": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Message"}, "implicit": {"default": false, "title": "Implicit", "type": "boolean"}, "negate": {"default": false, "title": "Negate", "type": "boolean"}, "expression": {"title": "Expression", "type": "string"}}, "required": ["expression"], "title": "ExpressionParameterValidatorModel", "type": "object"}, "FilePatternDatasetCollectionDescription": {"properties": {"discover_via": {"const": "pattern", "title": "Discover Via", "type": "string"}, "format": {"anyOf": [{"type": "string"}, {"type": "null"}], "title": "Format"}, "visible": {"title": "Visible", "type": "boolean"}, "assign_primary_output": {"title": "Assign Primary Output", "type": "boolean"}, "directory": {"anyOf": [{"type": "string"}, {"type": "null"}], "title": "Directory"}, "recurse": {"title": "Recurse", "type": "boolean"}, "match_relative_path": {"title": "Match Relative Path", "type": "boolean"}, "sort_key": {"enum": ["filename", "name", "designation", "dbkey"], "title": "Sort Key", "type": "string"}, "sort_comp": {"enum": ["lexical", "numeric"], "title": "Sort Comp", "type": "string"}, "pattern": {"title": "Pattern", "type": "string"}}, "required": ["discover_via", "format", "visible", "assign_primary_output", "directory", "recurse", "match_relative_path", "sort_key", "sort_comp", "pattern"], "title": "FilePatternDatasetCollectionDescription", "type": "object"}, "FloatParameterModel": {"properties": {"name": {"title": "Name", "type": "string"}, "parameter_type": {"const": "gx_float", "default": "gx_float", "title": "Parameter Type", "type": "string"}, "hidden": {"default": false, "title": "Hidden", "type": "boolean"}, "label": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "help": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Help"}, "argument": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Argument"}, "is_dynamic": {"default": false, "title": "Is Dynamic", "type": "boolean"}, "optional": {"default": false, "title": "Optional", "type": "boolean"}, "type": {"const": "float", "title": "Type", "type": "string"}, "value": {"anyOf": [{"type": "number"}, {"type": "null"}], "default": null, "title": "Value"}, "min": {"anyOf": [{"type": "number"}, {"type": "null"}], "default": null, "title": "Min"}, "max": {"anyOf": [{"type": "number"}, {"type": "null"}], "default": null, "title": "Max"}, "validators": {"default": [], "items": {"$ref": "#/$defs/InRangeParameterValidatorModel"}, "title": "Validators", "type": "array"}}, "required": ["name", "type"], "title": "FloatParameterModel", "type": "object"}, "GalaxyToolParameterModel": {"discriminator": {"mapping": {"baseurl": "#/$defs/BaseUrlParameterModel", "boolean": "#/$defs/BooleanParameterModel", "color": "#/$defs/ColorParameterModel", "conditional": "#/$defs/ConditionalParameterModel", "data": "#/$defs/DataParameterModel", "data_collection": "#/$defs/DataCollectionParameterModel", "data_column": "#/$defs/DataColumnParameterModel", "directory": "#/$defs/DirectoryUriParameterModel", "drill_down": "#/$defs/DrillDownParameterModel", "float": "#/$defs/FloatParameterModel", "genomebuild": "#/$defs/GenomeBuildParameterModel", "group_tag": "#/$defs/GroupTagParameterModel", "hidden": "#/$defs/HiddenParameterModel", "integer": "#/$defs/IntegerParameterModel", "repeat": "#/$defs/RepeatParameterModel", "rules": "#/$defs/RulesParameterModel", "section": "#/$defs/SectionParameterModel", "select": "#/$defs/SelectParameterModel", "text": "#/$defs/TextParameterModel"}, "propertyName": "type"}, "oneOf": [{"$ref": "#/$defs/TextParameterModel"}, {"$ref": "#/$defs/IntegerParameterModel"}, {"$ref": "#/$defs/FloatParameterModel"}, {"$ref": "#/$defs/BooleanParameterModel"}, {"$ref": "#/$defs/HiddenParameterModel"}, {"$ref": "#/$defs/SelectParameterModel"}, {"$ref": "#/$defs/DataParameterModel"}, {"$ref": "#/$defs/DataCollectionParameterModel"}, {"$ref": "#/$defs/DataColumnParameterModel"}, {"$ref": "#/$defs/DirectoryUriParameterModel"}, {"$ref": "#/$defs/RulesParameterModel"}, {"$ref": "#/$defs/DrillDownParameterModel"}, {"$ref": "#/$defs/GroupTagParameterModel"}, {"$ref": "#/$defs/BaseUrlParameterModel"}, {"$ref": "#/$defs/GenomeBuildParameterModel"}, {"$ref": "#/$defs/ColorParameterModel"}, {"$ref": "#/$defs/ConditionalParameterModel"}, {"$ref": "#/$defs/RepeatParameterModel"}, {"$ref": "#/$defs/SectionParameterModel"}], "title": "GalaxyToolParameterModel"}, "GenomeBuildParameterModel": {"properties": {"name": {"title": "Name", "type": "string"}, "parameter_type": {"const": "gx_genomebuild", "default": "gx_genomebuild", "title": "Parameter Type", "type": "string"}, "hidden": {"default": false, "title": "Hidden", "type": "boolean"}, "label": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "help": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Help"}, "argument": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Argument"}, "is_dynamic": {"default": false, "title": "Is Dynamic", "type": "boolean"}, "optional": {"default": false, "title": "Optional", "type": "boolean"}, "type": {"const": "genomebuild", "title": "Type", "type": "string"}, "multiple": {"title": "Multiple", "type": "boolean"}}, "required": ["name", "type", "multiple"], "title": "GenomeBuildParameterModel", "type": "object"}, "GroupTagParameterModel": {"properties": {"name": {"title": "Name", "type": "string"}, "parameter_type": {"const": "gx_group_tag", "default": "gx_group_tag", "title": "Parameter Type", "type": "string"}, "hidden": {"default": false, "title": "Hidden", "type": "boolean"}, "label": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "help": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Help"}, "argument": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Argument"}, "is_dynamic": {"default": false, "title": "Is Dynamic", "type": "boolean"}, "optional": {"default": false, "title": "Optional", "type": "boolean"}, "type": {"const": "group_tag", "title": "Type", "type": "string"}, "multiple": {"title": "Multiple", "type": "boolean"}}, "required": ["name", "type", "multiple"], "title": "GroupTagParameterModel", "type": "object"}, "HelpContent": {"properties": {"format": {"enum": ["restructuredtext", "plain_text", "markdown"], "title": "Format", "type": "string"}, "content": {"title": "Content", "type": "string"}}, "required": ["format", "content"], "title": "HelpContent", "type": "object"}, "HiddenParameterModel": {"properties": {"name": {"title": "Name", "type": "string"}, "parameter_type": {"const": "gx_hidden", "default": "gx_hidden", "title": "Parameter Type", "type": "string"}, "hidden": {"default": false, "title": "Hidden", "type": "boolean"}, "label": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "help": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Help"}, "argument": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Argument"}, "is_dynamic": {"default": false, "title": "Is Dynamic", "type": "boolean"}, "optional": {"default": false, "title": "Optional", "type": "boolean"}, "type": {"const": "hidden", "title": "Type", "type": "string"}, "value": {"anyOf": [{"type": "string"}, {"type": "null"}], "title": "Value"}, "validators": {"default": [], "items": {"anyOf": [{"$ref": "#/$defs/LengthParameterValidatorModel"}, {"$ref": "#/$defs/RegexParameterValidatorModel"}, {"$ref": "#/$defs/ExpressionParameterValidatorModel"}, {"$ref": "#/$defs/EmptyFieldParameterValidatorModel"}]}, "title": "Validators", "type": "array"}}, "required": ["name", "type", "value"], "title": "HiddenParameterModel", "type": "object"}, "InRangeParameterValidatorModel": {"additionalProperties": false, "properties": {"type": {"const": "in_range", "default": "in_range", "title": "Type", "type": "string"}, "message": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Message"}, "implicit": {"default": false, "title": "Implicit", "type": "boolean"}, "min": {"anyOf": [{"type": "number"}, {"type": "integer"}, {"type": "null"}], "default": null, "title": "Min"}, "max": {"anyOf": [{"type": "number"}, {"type": "integer"}, {"type": "null"}], "default": null, "title": "Max"}, "exclude_min": {"default": false, "title": "Exclude Min", "type": "boolean"}, "exclude_max": {"default": false, "title": "Exclude Max", "type": "boolean"}, "negate": {"default": false, "title": "Negate", "type": "boolean"}}, "title": "InRangeParameterValidatorModel", "type": "object"}, "IntegerParameterModel": {"properties": {"name": {"title": "Name", "type": "string"}, "parameter_type": {"const": "gx_integer", "default": "gx_integer", "title": "Parameter Type", "type": "string"}, "hidden": {"default": false, "title": "Hidden", "type": "boolean"}, "label": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "help": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Help"}, "argument": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Argument"}, "is_dynamic": {"default": false, "title": "Is Dynamic", "type": "boolean"}, "optional": {"title": "Optional", "type": "boolean"}, "type": {"const": "integer", "title": "Type", "type": "string"}, "value": {"anyOf": [{"type": "integer"}, {"type": "null"}], "default": null, "title": "Value"}, "min": {"anyOf": [{"type": "integer"}, {"type": "null"}], "default": null, "title": "Min"}, "max": {"anyOf": [{"type": "integer"}, {"type": "null"}], "default": null, "title": "Max"}, "validators": {"default": [], "items": {"$ref": "#/$defs/InRangeParameterValidatorModel"}, "title": "Validators", "type": "array"}}, "required": ["name", "optional", "type"], "title": "IntegerParameterModel", "type": "object"}, "JavascriptRequirement": {"properties": {"type": {"const": "javascript", "title": "Type", "type": "string"}, "expression_lib": {"anyOf": [{"items": {"description": "Provide Javascript/ECMAScript 5.1 code here that will be available for expressions inside the `shell_command` field.", "examples": ["function pickValue() {\n    if (inputs.conditional_parameter.test_parameter == \"a\") {\n        return inputs.conditional_parameter.integer_parameter\n    } else {\n        return inputs.conditional_parameter.boolean_parameter\n    }\n}"], "title": "expression_lib", "type": "string"}, "type": "array"}, {"type": "null"}], "title": "Expression Lib"}}, "required": ["type", "expression_lib"], "title": "JavascriptRequirement", "type": "object"}, "LabelValue": {"properties": {"label": {"title": "Label", "type": "string"}, "value": {"title": "Value", "type": "string"}, "selected": {"title": "Selected", "type": "boolean"}}, "required": ["label", "value", "selected"], "title": "LabelValue", "type": "object"}, "LengthParameterValidatorModel": {"additionalProperties": false, "properties": {"type": {"const": "length", "default": "length", "title": "Type", "type": "string"}, "message": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Message"}, "implicit": {"default": false, "title": "Implicit", "type": "boolean"}, "min": {"anyOf": [{"type": "integer"}, {"type": "null"}], "default": null, "title": "Min"}, "max": {"anyOf": [{"type": "integer"}, {"type": "null"}], "default": null, "title": "Max"}, "negate": {"default": false, "title": "Negate", "type": "boolean"}}, "title": "LengthParameterValidatorModel", "type": "object"}, "NoOptionsParameterValidatorModel": {"additionalProperties": false, "properties": {"type": {"const": "no_options", "default": "no_options", "title": "Type", "type": "string"}, "message": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Message"}, "implicit": {"default": false, "title": "Implicit", "type": "boolean"}, "negate": {"default": false, "title": "Negate", "type": "boolean"}}, "title": "NoOptionsParameterValidatorModel", "type": "object"}, "RegexParameterValidatorModel": {"additionalProperties": false, "description": "Check if a regular expression **matches** the value, i.e. appears\nat the beginning of the value. To enforce a match of the complete value use\n``$`` at the end of the expression. The expression is given is the content\nof the validator tag. Note that for ``selects`` each option is checked\nseparately.", "properties": {"type": {"const": "regex", "default": "regex", "title": "Type", "type": "string"}, "message": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Message"}, "implicit": {"default": false, "title": "Implicit", "type": "boolean"}, "negate": {"default": false, "title": "Negate", "type": "boolean"}, "expression": {"title": "Expression", "type": "string"}}, "required": ["expression"], "title": "RegexParameterValidatorModel", "type": "object"}, "RepeatParameterModel": {"properties": {"name": {"title": "Name", "type": "string"}, "parameter_type": {"const": "gx_repeat", "default": "gx_repeat", "title": "Parameter Type", "type": "string"}, "hidden": {"default": false, "title": "Hidden", "type": "boolean"}, "label": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "help": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Help"}, "argument": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Argument"}, "is_dynamic": {"default": false, "title": "Is Dynamic", "type": "boolean"}, "optional": {"default": false, "title": "Optional", "type": "boolean"}, "type": {"const": "repeat", "title": "Type", "type": "string"}, "parameters": {"items": {"anyOf": [{"$ref": "#/$defs/CwlIntegerParameterModel"}, {"$ref": "#/$defs/CwlFloatParameterModel"}, {"$ref": "#/$defs/CwlStringParameterModel"}, {"$ref": "#/$defs/CwlBooleanParameterModel"}, {"$ref": "#/$defs/CwlNullParameterModel"}, {"$ref": "#/$defs/CwlFileParameterModel"}, {"$ref": "#/$defs/CwlDirectoryParameterModel"}, {"$ref": "#/$defs/CwlUnionParameterModel"}, {"$ref": "#/$defs/TextParameterModel"}, {"$ref": "#/$defs/IntegerParameterModel"}, {"$ref": "#/$defs/FloatParameterModel"}, {"$ref": "#/$defs/BooleanParameterModel"}, {"$ref": "#/$defs/HiddenParameterModel"}, {"$ref": "#/$defs/SelectParameterModel"}, {"$ref": "#/$defs/DataParameterModel"}, {"$ref": "#/$defs/DataCollectionParameterModel"}, {"$ref": "#/$defs/DataColumnParameterModel"}, {"$ref": "#/$defs/DirectoryUriParameterModel"}, {"$ref": "#/$defs/RulesParameterModel"}, {"$ref": "#/$defs/DrillDownParameterModel"}, {"$ref": "#/$defs/GroupTagParameterModel"}, {"$ref": "#/$defs/BaseUrlParameterModel"}, {"$ref": "#/$defs/GenomeBuildParameterModel"}, {"$ref": "#/$defs/ColorParameterModel"}, {"$ref": "#/$defs/ConditionalParameterModel"}, {"$ref": "#/$defs/RepeatParameterModel"}, {"$ref": "#/$defs/SectionParameterModel"}]}, "title": "Parameters", "type": "array"}, "min": {"anyOf": [{"type": "integer"}, {"type": "null"}], "default": null, "title": "Min"}, "max": {"anyOf": [{"type": "integer"}, {"type": "null"}], "default": null, "title": "Max"}}, "required": ["name", "type", "parameters"], "title": "RepeatParameterModel", "type": "object"}, "ResourceRequirement": {"properties": {"type": {"const": "resource", "title": "Type", "type": "string"}, "cores_min": {"anyOf": [{"type": "number"}, {"type": "integer"}, {"type": "null"}], "title": "Cores Min"}, "cores_max": {"anyOf": [{"type": "number"}, {"type": "integer"}, {"type": "null"}], "title": "Cores Max"}, "ram_min": {"anyOf": [{"type": "number"}, {"type": "integer"}, {"type": "null"}], "title": "Ram Min"}, "ram_max": {"anyOf": [{"type": "number"}, {"type": "integer"}, {"type": "null"}], "title": "Ram Max"}, "tmpdir_min": {"anyOf": [{"type": "number"}, {"type": "integer"}, {"type": "null"}], "title": "Tmpdir Min"}, "tmpdir_max": {"anyOf": [{"type": "number"}, {"type": "integer"}, {"type": "null"}], "title": "Tmpdir Max"}, "cuda_version_min": {"anyOf": [{"type": "number"}, {"type": "integer"}, {"type": "null"}], "title": "Cuda Version Min"}, "cuda_compute_capability": {"anyOf": [{"type": "number"}, {"type": "integer"}, {"type": "null"}], "title": "Cuda Compute Capability"}, "gpu_memory_min": {"anyOf": [{"type": "number"}, {"type": "integer"}, {"type": "null"}], "title": "Gpu Memory Min"}, "cuda_device_count_min": {"anyOf": [{"type": "number"}, {"type": "integer"}, {"type": "null"}], "title": "Cuda Device Count Min"}, "cuda_device_count_max": {"anyOf": [{"type": "number"}, {"type": "integer"}, {"type": "null"}], "title": "Cuda Device Count Max"}, "shm_size": {"anyOf": [{"type": "number"}, {"type": "integer"}, {"type": "null"}], "title": "Shm Size"}}, "required": ["type", "cores_min", "cores_max", "ram_min", "ram_max", "tmpdir_min", "tmpdir_max", "cuda_version_min", "cuda_compute_capability", "gpu_memory_min", "cuda_device_count_min", "cuda_device_count_max", "shm_size"], "title": "ResourceRequirement", "type": "object"}, "RulesParameterModel": {"properties": {"name": {"title": "Name", "type": "string"}, "parameter_type": {"const": "gx_rules", "default": "gx_rules", "title": "Parameter Type", "type": "string"}, "hidden": {"default": false, "title": "Hidden", "type": "boolean"}, "label": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "help": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Help"}, "argument": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Argument"}, "is_dynamic": {"default": false, "title": "Is Dynamic", "type": "boolean"}, "optional": {"default": false, "title": "Optional", "type": "boolean"}, "type": {"const": "rules", "title": "Type", "type": "string"}}, "required": ["name", "type"], "title": "RulesParameterModel", "type": "object"}, "SectionParameterModel": {"properties": {"name": {"title": "Name", "type": "string"}, "parameter_type": {"const": "gx_section", "default": "gx_section", "title": "Parameter Type", "type": "string"}, "hidden": {"default": false, "title": "Hidden", "type": "boolean"}, "label": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "help": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Help"}, "argument": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Argument"}, "is_dynamic": {"default": false, "title": "Is Dynamic", "type": "boolean"}, "optional": {"default": false, "title": "Optional", "type": "boolean"}, "type": {"const": "section", "title": "Type", "type": "string"}, "parameters": {"items": {"anyOf": [{"$ref": "#/$defs/CwlIntegerParameterModel"}, {"$ref": "#/$defs/CwlFloatParameterModel"}, {"$ref": "#/$defs/CwlStringParameterModel"}, {"$ref": "#/$defs/CwlBooleanParameterModel"}, {"$ref": "#/$defs/CwlNullParameterModel"}, {"$ref": "#/$defs/CwlFileParameterModel"}, {"$ref": "#/$defs/CwlDirectoryParameterModel"}, {"$ref": "#/$defs/CwlUnionParameterModel"}, {"$ref": "#/$defs/TextParameterModel"}, {"$ref": "#/$defs/IntegerParameterModel"}, {"$ref": "#/$defs/FloatParameterModel"}, {"$ref": "#/$defs/BooleanParameterModel"}, {"$ref": "#/$defs/HiddenParameterModel"}, {"$ref": "#/$defs/SelectParameterModel"}, {"$ref": "#/$defs/DataParameterModel"}, {"$ref": "#/$defs/DataCollectionParameterModel"}, {"$ref": "#/$defs/DataColumnParameterModel"}, {"$ref": "#/$defs/DirectoryUriParameterModel"}, {"$ref": "#/$defs/RulesParameterModel"}, {"$ref": "#/$defs/DrillDownParameterModel"}, {"$ref": "#/$defs/GroupTagParameterModel"}, {"$ref": "#/$defs/BaseUrlParameterModel"}, {"$ref": "#/$defs/GenomeBuildParameterModel"}, {"$ref": "#/$defs/ColorParameterModel"}, {"$ref": "#/$defs/ConditionalParameterModel"}, {"$ref": "#/$defs/RepeatParameterModel"}, {"$ref": "#/$defs/SectionParameterModel"}]}, "title": "Parameters", "type": "array"}}, "required": ["name", "type", "parameters"], "title": "SectionParameterModel", "type": "object"}, "SelectParameterModel": {"properties": {"name": {"title": "Name", "type": "string"}, "parameter_type": {"const": "gx_select", "default": "gx_select", "title": "Parameter Type", "type": "string"}, "hidden": {"default": false, "title": "Hidden", "type": "boolean"}, "label": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "help": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Help"}, "argument": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Argument"}, "is_dynamic": {"default": false, "title": "Is Dynamic", "type": "boolean"}, "optional": {"default": false, "title": "Optional", "type": "boolean"}, "type": {"const": "select", "title": "Type", "type": "string"}, "options": {"anyOf": [{"items": {"$ref": "#/$defs/LabelValue"}, "type": "array"}, {"type": "null"}], "default": null, "title": "Options"}, "multiple": {"default": false, "title": "Multiple", "type": "boolean"}, "validators": {"default": [], "items": {"$ref": "#/$defs/NoOptionsParameterValidatorModel"}, "title": "Validators", "type": "array"}}, "required": ["name", "type"], "title": "SelectParameterModel", "type": "object"}, "TextParameterModel": {"properties": {"name": {"title": "Name", "type": "string"}, "parameter_type": {"const": "gx_text", "default": "gx_text", "title": "Parameter Type", "type": "string"}, "hidden": {"default": false, "title": "Hidden", "type": "boolean"}, "label": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "help": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Help"}, "argument": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Argument"}, "is_dynamic": {"default": false, "title": "Is Dynamic", "type": "boolean"}, "optional": {"default": false, "title": "Optional", "type": "boolean"}, "type": {"const": "text", "title": "Type", "type": "string"}, "area": {"default": false, "title": "Area", "type": "boolean"}, "value": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Value"}, "default_options": {"default": [], "items": {"$ref": "#/$defs/LabelValue"}, "title": "Default Options", "type": "array"}, "validators": {"default": [], "items": {"anyOf": [{"$ref": "#/$defs/LengthParameterValidatorModel"}, {"$ref": "#/$defs/RegexParameterValidatorModel"}, {"$ref": "#/$defs/ExpressionParameterValidatorModel"}, {"$ref": "#/$defs/EmptyFieldParameterValidatorModel"}]}, "title": "Validators", "type": "array"}}, "required": ["name", "type"], "title": "TextParameterModel", "type": "object"}, "ToolOutputBoolean": {"properties": {"name": {"description": "Parameter name. Used when referencing parameter in workflows.", "title": "Name"}, "label": {"anyOf": [{"description": "Output label. Will be used as dataset name in history.", "type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "hidden": {"title": "Hidden"}, "type": {"const": "boolean", "title": "Type", "type": "string"}}, "required": ["name", "hidden", "type"], "title": "ToolOutputBoolean", "type": "object"}, "ToolOutputCollectionG_Annotated_Union_bool__NoneType___FieldInfo_annotation_NoneType__required_False__default_None___Annotated_Union_str__NoneType___FieldInfo_annotation_NoneType__required_False__default_None___": {"properties": {"name": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "description": "Parameter name. Used when referencing parameter in workflows.", "title": "Name"}, "label": {"anyOf": [{"description": "Output label. Will be used as dataset name in history.", "type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "hidden": {"anyOf": [{"type": "boolean"}, {"type": "null"}], "default": null, "title": "Hidden"}, "type": {"const": "collection", "title": "Type", "type": "string"}, "structure": {"$ref": "#/$defs/ToolOutputCollectionStructure"}}, "required": ["type", "structure"], "title": "ToolOutputCollectionG[Annotated[Union[bool, NoneType], FieldInfo(annotation=NoneType, required=False, default=None)], Annotated[Union[str, NoneType], FieldInfo(annotation=NoneType, required=False, default=None)]]", "type": "object"}, "ToolOutputCollectionStructure": {"properties": {"collection_type": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Collection Type"}, "collection_type_source": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Collection Type Source"}, "collection_type_from_rules": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Collection Type From Rules"}, "structured_like": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Structured Like"}, "discover_datasets": {"anyOf": [{"items": {"anyOf": [{"$ref": "#/$defs/FilePatternDatasetCollectionDescription"}, {"$ref": "#/$defs/ToolProvidedMetadataDatasetCollection"}]}, "type": "array"}, {"type": "null"}], "default": null, "title": "Discover Datasets"}}, "title": "ToolOutputCollectionStructure", "type": "object"}, "ToolOutputDatasetG_Annotated_Union_bool__NoneType___FieldInfo_annotation_NoneType__required_False__default_None___Annotated_Union_str__NoneType___FieldInfo_annotation_NoneType__required_False__default_None___": {"properties": {"name": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "description": "Parameter name. Used when referencing parameter in workflows.", "title": "Name"}, "label": {"anyOf": [{"description": "Output label. Will be used as dataset name in history.", "type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "hidden": {"anyOf": [{"type": "boolean"}, {"type": "null"}], "default": null, "title": "Hidden"}, "type": {"const": "data", "title": "Type", "type": "string"}, "format": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "description": "The short name for the output datatype.", "title": "Format"}, "format_source": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Format Source"}, "metadata_source": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Metadata Source"}, "discover_datasets": {"anyOf": [{"items": {"anyOf": [{"$ref": "#/$defs/FilePatternDatasetCollectionDescription"}, {"$ref": "#/$defs/ToolProvidedMetadataDatasetCollection"}]}, "type": "array"}, {"type": "null"}], "default": null, "title": "Discover Datasets"}, "from_work_dir": {"anyOf": [{"description": "Relative path to a file produced by the tool in its working directory. Output\u2019s contents are set to this file\u2019s contents.", "title": "from_work_dir", "type": "string"}, {"type": "null"}], "default": null, "title": "From Work Dir"}}, "required": ["type"], "title": "ToolOutputDatasetG[Annotated[Union[bool, NoneType], FieldInfo(annotation=NoneType, required=False, default=None)], Annotated[Union[str, NoneType], FieldInfo(annotation=NoneType, required=False, default=None)]]", "type": "object"}, "ToolOutputFloat": {"properties": {"name": {"description": "Parameter name. Used when referencing parameter in workflows.", "title": "Name"}, "label": {"anyOf": [{"description": "Output label. Will be used as dataset name in history.", "type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "hidden": {"title": "Hidden"}, "type": {"const": "float", "title": "Type", "type": "string"}}, "required": ["name", "hidden", "type"], "title": "ToolOutputFloat", "type": "object"}, "ToolOutputInteger": {"properties": {"name": {"description": "Parameter name. Used when referencing parameter in workflows.", "title": "Name"}, "label": {"anyOf": [{"description": "Output label. Will be used as dataset name in history.", "type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "hidden": {"title": "Hidden"}, "type": {"const": "integer", "title": "Type", "type": "string"}}, "required": ["name", "hidden", "type"], "title": "ToolOutputInteger", "type": "object"}, "ToolOutputText": {"properties": {"name": {"description": "Parameter name. Used when referencing parameter in workflows.", "title": "Name"}, "label": {"anyOf": [{"description": "Output label. Will be used as dataset name in history.", "type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "hidden": {"title": "Hidden"}, "type": {"const": "text", "title": "Type", "type": "string"}}, "required": ["name", "hidden", "type"], "title": "ToolOutputText", "type": "object"}, "ToolProvidedMetadataDatasetCollection": {"properties": {"discover_via": {"const": "tool_provided_metadata", "title": "Discover Via", "type": "string"}, "format": {"anyOf": [{"type": "string"}, {"type": "null"}], "title": "Format"}, "visible": {"title": "Visible", "type": "boolean"}, "assign_primary_output": {"title": "Assign Primary Output", "type": "boolean"}, "directory": {"anyOf": [{"type": "string"}, {"type": "null"}], "title": "Directory"}, "recurse": {"title": "Recurse", "type": "boolean"}, "match_relative_path": {"title": "Match Relative Path", "type": "boolean"}}, "required": ["discover_via", "format", "visible", "assign_primary_output", "directory", "recurse", "match_relative_path"], "title": "ToolProvidedMetadataDatasetCollection", "type": "object"}, "XrefDict": {"properties": {"value": {"title": "Value", "type": "string"}, "type": {"title": "Type", "type": "string"}}, "required": ["value", "type"], "title": "XrefDict", "type": "object"}}, "properties": {"class": {"const": "GalaxyUserTool", "title": "Class", "type": "string"}, "id": {"anyOf": [{"type": "string"}, {"type": "null"}], "title": "Id"}, "version": {"anyOf": [{"type": "string"}, {"type": "null"}], "title": "Version"}, "name": {"title": "Name", "type": "string"}, "description": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Description"}, "container": {"title": "Container", "type": "string"}, "requirements": {"anyOf": [{"items": {"anyOf": [{"$ref": "#/$defs/JavascriptRequirement"}, {"$ref": "#/$defs/ResourceRequirement"}, {"$ref": "#/$defs/ContainerRequirement"}]}, "type": "array"}, {"type": "null"}], "default": [], "title": "Requirements"}, "shell_command": {"description": "A string that contains the command to be executed. Parameters can be referenced inside $().", "examples": ["head -n '$(inputs.n_lines)' '$(inputs.data_input.path)'"], "title": "shell_command", "type": "string"}, "inputs": {"default": [], "items": {"$ref": "#/$defs/GalaxyToolParameterModel"}, "title": "Inputs", "type": "array"}, "outputs": {"default": [], "items": {"discriminator": {"mapping": {"boolean": "#/$defs/ToolOutputBoolean", "collection": "#/$defs/ToolOutputCollectionG_Annotated_Union_bool__NoneType___FieldInfo_annotation_NoneType__required_False__default_None___Annotated_Union_str__NoneType___FieldInfo_annotation_NoneType__required_False__default_None___", "data": "#/$defs/ToolOutputDatasetG_Annotated_Union_bool__NoneType___FieldInfo_annotation_NoneType__required_False__default_None___Annotated_Union_str__NoneType___FieldInfo_annotation_NoneType__required_False__default_None___", "float": "#/$defs/ToolOutputFloat", "integer": "#/$defs/ToolOutputInteger", "text": "#/$defs/ToolOutputText"}, "propertyName": "type"}, "oneOf": [{"$ref": "#/$defs/ToolOutputDatasetG_Annotated_Union_bool__NoneType___FieldInfo_annotation_NoneType__required_False__default_None___Annotated_Union_str__NoneType___FieldInfo_annotation_NoneType__required_False__default_None___"}, {"$ref": "#/$defs/ToolOutputCollectionG_Annotated_Union_bool__NoneType___FieldInfo_annotation_NoneType__required_False__default_None___Annotated_Union_str__NoneType___FieldInfo_annotation_NoneType__required_False__default_None___"}, {"$ref": "#/$defs/ToolOutputText"}, {"$ref": "#/$defs/ToolOutputInteger"}, {"$ref": "#/$defs/ToolOutputFloat"}, {"$ref": "#/$defs/ToolOutputBoolean"}]}, "title": "Outputs", "type": "array"}, "citations": {"anyOf": [{"items": {"$ref": "#/$defs/Citation"}, "type": "array"}, {"type": "null"}], "default": null, "title": "Citations"}, "license": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "License"}, "edam_operations": {"anyOf": [{"items": {"type": "string"}, "type": "array"}, {"type": "null"}], "default": null, "title": "Edam Operations"}, "edam_topics": {"anyOf": [{"items": {"type": "string"}, "type": "array"}, {"type": "null"}], "default": null, "title": "Edam Topics"}, "xrefs": {"anyOf": [{"items": {"$ref": "#/$defs/XrefDict"}, "type": "array"}, {"type": "null"}], "default": null, "title": "Xrefs"}, "help": {"anyOf": [{"$ref": "#/$defs/HelpContent"}, {"type": "null"}], "default": null}}, "required": ["class", "id", "version", "name", "container", "shell_command"], "title": "UserToolSource", "type": "object"}
+{"$defs": {"BaseUrlParameterModel": {"properties": {"name": {"description": "Parameter name. Used when referencing parameter in workflows or inside command templating.", "title": "Name", "type": "string"}, "parameter_type": {"const": "gx_baseurl", "default": "gx_baseurl", "title": "Parameter Type", "type": "string"}, "hidden": {"default": false, "title": "Hidden", "type": "boolean"}, "label": {"anyOf": [{"description": "Will be displayed on the tool page as the label of the parameter.", "type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "help": {"anyOf": [{"description": "Short bit of text, rendered on the tool form just below the associated field to provide information about the field.", "type": "string"}, {"type": "null"}], "default": null, "title": "Help"}, "argument": {"anyOf": [{"description": "If the parameter reflects just one command line argument of a certain tool, this tag should be set to that particular argument. 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Used when referencing parameter in workflows or inside command templating.", "title": "Name", "type": "string"}, "parameter_type": {"const": "gx_boolean", "default": "gx_boolean", "title": "Parameter Type", "type": "string"}, "hidden": {"default": false, "title": "Hidden", "type": "boolean"}, "label": {"anyOf": [{"description": "Will be displayed on the tool page as the label of the parameter.", "type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "help": {"anyOf": [{"description": "Short bit of text, rendered on the tool form just below the associated field to provide information about the field.", "type": "string"}, {"type": "null"}], "default": null, "title": "Help"}, "argument": {"anyOf": [{"description": "If the parameter reflects just one command line argument of a certain tool, this tag should be set to that particular argument. It is rendered in parenthesis after the help section, and it will create the name attribute (if not given explicitly) from the argument attribute by stripping leading dashes and replacing all remaining dashes by underscores (e.g. if argument=\"--long-parameter\" then name=\"long_parameter\" is implicit).", "type": "string"}, {"type": "null"}], "default": null, "title": "Argument"}, "is_dynamic": {"default": false, "title": "Is Dynamic", "type": "boolean"}, "optional": {"default": false, "description": "If `false`, parameter must have a value.", "title": "Optional", "type": "boolean"}, "type": {"const": "boolean", "title": "Type", "type": "string"}, "value": {"anyOf": [{"type": "boolean"}, {"type": "null"}], "default": false, "title": "Value"}, "truevalue": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Truevalue"}, "falsevalue": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Falsevalue"}}, "required": ["name", "type"], "title": "BooleanParameterModel", "type": "object"}, "Citation": {"properties": {"type": {"title": "Type", "type": "string"}, "content": {"title": "Content", "type": "string"}}, "required": ["type", "content"], "title": "Citation", "type": "object"}, "ColorParameterModel": {"properties": {"name": {"description": "Parameter name. 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Used when referencing parameter in workflows or inside command templating.", "title": "Name", "type": "string"}, "parameter_type": {"const": "gx_conditional", "default": "gx_conditional", "title": "Parameter Type", "type": "string"}, "hidden": {"default": false, "title": "Hidden", "type": "boolean"}, "label": {"anyOf": [{"description": "Will be displayed on the tool page as the label of the parameter.", "type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "help": {"anyOf": [{"description": "Short bit of text, rendered on the tool form just below the associated field to provide information about the field.", "type": "string"}, {"type": "null"}], "default": null, "title": "Help"}, "argument": {"anyOf": [{"description": "If the parameter reflects just one command line argument of a certain tool, this tag should be set to that particular argument. 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Used when referencing parameter in workflows or inside command templating.", "title": "Name", "type": "string"}, "parameter_type": {"const": "cwl_file", "default": "cwl_file", "title": "Parameter Type", "type": "string"}, "hidden": {"default": false, "title": "Hidden", "type": "boolean"}, "label": {"anyOf": [{"description": "Will be displayed on the tool page as the label of the parameter.", "type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "help": {"anyOf": [{"description": "Short bit of text, rendered on the tool form just below the associated field to provide information about the field.", "type": "string"}, {"type": "null"}], "default": null, "title": "Help"}, "argument": {"anyOf": [{"description": "If the parameter reflects just one command line argument of a certain tool, this tag should be set to that particular argument. 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Used when referencing parameter in workflows or inside command templating.", "title": "Name", "type": "string"}, "parameter_type": {"const": "cwl_float", "default": "cwl_float", "title": "Parameter Type", "type": "string"}}, "required": ["name"], "title": "CwlFloatParameterModel", "type": "object"}, "CwlIntegerParameterModel": {"properties": {"name": {"description": "Parameter name. Used when referencing parameter in workflows or inside command templating.", "title": "Name", "type": "string"}, "parameter_type": {"const": "cwl_integer", "default": "cwl_integer", "title": "Parameter Type", "type": "string"}}, "required": ["name"], "title": "CwlIntegerParameterModel", "type": "object"}, "CwlNullParameterModel": {"properties": {"name": {"description": "Parameter name. Used when referencing parameter in workflows or inside command templating.", "title": "Name", "type": "string"}, "parameter_type": {"const": "cwl_null", "default": "cwl_null", "title": "Parameter Type", "type": "string"}}, "required": ["name"], "title": "CwlNullParameterModel", "type": "object"}, "CwlStringParameterModel": {"properties": {"name": {"description": "Parameter name. Used when referencing parameter in workflows or inside command templating.", "title": "Name", "type": "string"}, "parameter_type": {"const": "cwl_string", "default": "cwl_string", "title": "Parameter Type", "type": "string"}}, "required": ["name"], "title": "CwlStringParameterModel", "type": "object"}, "CwlUnionParameterModel": {"properties": {"name": {"description": "Parameter name. Used when referencing parameter in workflows or inside command templating.", "title": "Name", "type": "string"}, "parameter_type": {"const": "cwl_union", "default": "cwl_union", "title": "Parameter Type", "type": "string"}, "parameters": {"items": {"anyOf": [{"$ref": "#/$defs/CwlIntegerParameterModel"}, {"$ref": "#/$defs/CwlFloatParameterModel"}, {"$ref": "#/$defs/CwlStringParameterModel"}, {"$ref": "#/$defs/CwlBooleanParameterModel"}, {"$ref": "#/$defs/CwlNullParameterModel"}, {"$ref": "#/$defs/CwlFileParameterModel"}, {"$ref": "#/$defs/CwlDirectoryParameterModel"}, {"$ref": "#/$defs/CwlUnionParameterModel"}]}, "title": "Parameters", "type": "array"}}, "required": ["name", "parameters"], "title": "CwlUnionParameterModel", "type": "object"}, "DataCollectionParameterModel": {"properties": {"name": {"description": "Parameter name. Used when referencing parameter in workflows or inside command templating.", "title": "Name", "type": "string"}, "parameter_type": {"const": "gx_data_collection", "default": "gx_data_collection", "title": "Parameter Type", "type": "string"}, "hidden": {"default": false, "title": "Hidden", "type": "boolean"}, "label": {"anyOf": [{"description": "Will be displayed on the tool page as the label of the parameter.", "type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "help": {"anyOf": [{"description": "Short bit of text, rendered on the tool form just below the associated field to provide information about the field.", "type": "string"}, {"type": "null"}], "default": null, "title": "Help"}, "argument": {"anyOf": [{"description": "If the parameter reflects just one command line argument of a certain tool, this tag should be set to that particular argument. 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Used when referencing parameter in workflows or inside command templating.", "title": "Name", "type": "string"}, "parameter_type": {"const": "gx_data_column", "default": "gx_data_column", "title": "Parameter Type", "type": "string"}, "hidden": {"default": false, "title": "Hidden", "type": "boolean"}, "label": {"anyOf": [{"description": "Will be displayed on the tool page as the label of the parameter.", "type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "help": {"anyOf": [{"description": "Short bit of text, rendered on the tool form just below the associated field to provide information about the field.", "type": "string"}, {"type": "null"}], "default": null, "title": "Help"}, "argument": {"anyOf": [{"description": "If the parameter reflects just one command line argument of a certain tool, this tag should be set to that particular argument. It is rendered in parenthesis after the help section, and it will create the name attribute (if not given explicitly) from the argument attribute by stripping leading dashes and replacing all remaining dashes by underscores (e.g. if argument=\"--long-parameter\" then name=\"long_parameter\" is implicit).", "type": "string"}, {"type": "null"}], "default": null, "title": "Argument"}, "is_dynamic": {"default": false, "title": "Is Dynamic", "type": "boolean"}, "optional": {"default": false, "description": "If `false`, parameter must have a value.", "title": "Optional", "type": "boolean"}, "type": {"const": "data_column", "title": "Type", "type": "string"}, "multiple": {"title": "Multiple", "type": "boolean"}, "value": {"anyOf": [{"type": "integer"}, {"items": {"type": "integer"}, "type": "array"}, {"type": "null"}], "default": null, "title": "Value"}}, "required": ["name", "type", "multiple"], "title": "DataColumnParameterModel", "type": "object"}, "DataParameterModel": {"properties": {"name": {"description": "Parameter name. Used when referencing parameter in workflows or inside command templating.", "title": "Name", "type": "string"}, "parameter_type": {"const": "gx_data", "default": "gx_data", "title": "Parameter Type", "type": "string"}, "hidden": {"default": false, "title": "Hidden", "type": "boolean"}, "label": {"anyOf": [{"description": "Will be displayed on the tool page as the label of the parameter.", "type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "help": {"anyOf": [{"description": "Short bit of text, rendered on the tool form just below the associated field to provide information about the field.", "type": "string"}, {"type": "null"}], "default": null, "title": "Help"}, "argument": {"anyOf": [{"description": "If the parameter reflects just one command line argument of a certain tool, this tag should be set to that particular argument. It is rendered in parenthesis after the help section, and it will create the name attribute (if not given explicitly) from the argument attribute by stripping leading dashes and replacing all remaining dashes by underscores (e.g. if argument=\"--long-parameter\" then name=\"long_parameter\" is implicit).", "type": "string"}, {"type": "null"}], "default": null, "title": "Argument"}, "is_dynamic": {"default": false, "title": "Is Dynamic", "type": "boolean"}, "optional": {"default": false, "description": "If `false`, parameter must have a value.", "title": "Optional", "type": "boolean"}, "type": {"const": "data", "title": "Type", "type": "string"}, "extensions": {"default": ["data"], "description": "Limit inputs to datasets with these extensions. Use 'data' to allow all input datasets.", "examples": ["txt", "tabular", "tiff"], "items": {"type": "string"}, "title": "Extensions", "type": "array"}, "multiple": {"default": false, "description": "Allow multiple values to be selected.", "title": "Multiple", "type": "boolean"}, "min": {"anyOf": [{"type": "integer"}, {"type": "null"}], "default": null, "title": "Min"}, "max": {"anyOf": [{"type": "integer"}, {"type": "null"}], "default": null, "title": "Max"}}, "required": ["name", "type"], "title": "DataParameterModel", "type": "object"}, "DirectoryUriParameterModel": {"properties": {"name": {"description": "Parameter name. Used when referencing parameter in workflows or inside command templating.", "title": "Name", "type": "string"}, "parameter_type": {"const": "gx_directory_uri", "default": "gx_directory_uri", "title": "Parameter Type", "type": "string"}, "hidden": {"default": false, "title": "Hidden", "type": "boolean"}, "label": {"anyOf": [{"description": "Will be displayed on the tool page as the label of the parameter.", "type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "help": {"anyOf": [{"description": "Short bit of text, rendered on the tool form just below the associated field to provide information about the field.", "type": "string"}, {"type": "null"}], "default": null, "title": "Help"}, "argument": {"anyOf": [{"description": "If the parameter reflects just one command line argument of a certain tool, this tag should be set to that particular argument. It is rendered in parenthesis after the help section, and it will create the name attribute (if not given explicitly) from the argument attribute by stripping leading dashes and replacing all remaining dashes by underscores (e.g. if argument=\"--long-parameter\" then name=\"long_parameter\" is implicit).", "type": "string"}, {"type": "null"}], "default": null, "title": "Argument"}, "is_dynamic": {"default": false, "title": "Is Dynamic", "type": "boolean"}, "optional": {"default": false, "description": "If `false`, parameter must have a value.", "title": "Optional", "type": "boolean"}, "type": {"const": "directory", "title": "Type", "type": "string"}, "validators": {"default": [], "items": {"anyOf": [{"$ref": "#/$defs/LengthParameterValidatorModel"}, {"$ref": "#/$defs/RegexParameterValidatorModel"}, {"$ref": "#/$defs/ExpressionParameterValidatorModel"}, {"$ref": "#/$defs/EmptyFieldParameterValidatorModel"}]}, "title": "Validators", "type": "array"}}, "required": ["name", "type"], "title": "DirectoryUriParameterModel", "type": "object"}, "DrillDownOptionsDict": {"properties": {"name": {"anyOf": [{"type": "string"}, {"type": "null"}], "title": "Name"}, "value": {"title": "Value", "type": "string"}, "options": {"items": {"$ref": "#/$defs/DrillDownOptionsDict"}, "title": "Options", "type": "array"}, "selected": {"title": "Selected", "type": "boolean"}}, "required": ["name", "value", "options", "selected"], "title": "DrillDownOptionsDict", "type": "object"}, "DrillDownParameterModel": {"properties": {"name": {"description": "Parameter name. Used when referencing parameter in workflows or inside command templating.", "title": "Name", "type": "string"}, "parameter_type": {"const": "gx_drill_down", "default": "gx_drill_down", "title": "Parameter Type", "type": "string"}, "hidden": {"default": false, "title": "Hidden", "type": "boolean"}, "label": {"anyOf": [{"description": "Will be displayed on the tool page as the label of the parameter.", "type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "help": {"anyOf": [{"description": "Short bit of text, rendered on the tool form just below the associated field to provide information about the field.", "type": "string"}, {"type": "null"}], "default": null, "title": "Help"}, "argument": {"anyOf": [{"description": "If the parameter reflects just one command line argument of a certain tool, this tag should be set to that particular argument. It is rendered in parenthesis after the help section, and it will create the name attribute (if not given explicitly) from the argument attribute by stripping leading dashes and replacing all remaining dashes by underscores (e.g. if argument=\"--long-parameter\" then name=\"long_parameter\" is implicit).", "type": "string"}, {"type": "null"}], "default": null, "title": "Argument"}, "is_dynamic": {"default": false, "title": "Is Dynamic", "type": "boolean"}, "optional": {"default": false, "description": "If `false`, parameter must have a value.", "title": "Optional", "type": "boolean"}, "type": {"const": "drill_down", "title": "Type", "type": "string"}, "options": {"anyOf": [{"items": {"$ref": "#/$defs/DrillDownOptionsDict"}, "type": "array"}, {"type": "null"}], "default": null, "title": "Options"}, "multiple": {"title": "Multiple", "type": "boolean"}, "hierarchy": {"enum": ["recurse", "exact"], "title": "Hierarchy", "type": "string"}}, "required": ["name", "type", "multiple", "hierarchy"], "title": "DrillDownParameterModel", "type": "object"}, "EmptyFieldParameterValidatorModel": {"additionalProperties": false, "properties": {"type": {"const": "empty_field", "default": "empty_field", "title": "Type", "type": "string"}, "message": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Message"}, "implicit": {"default": false, "title": "Implicit", "type": "boolean"}, "negate": {"default": false, "title": "Negate", "type": "boolean"}}, "title": "EmptyFieldParameterValidatorModel", "type": "object"}, "ExpressionParameterValidatorModel": {"additionalProperties": false, "description": "Check if a one line python expression given expression evaluates to True.\n\nThe expression is given is the content of the validator tag.", "properties": {"type": {"const": "expression", "default": "expression", "title": "Type", "type": "string"}, "message": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Message"}, "implicit": {"default": false, "title": "Implicit", "type": "boolean"}, "negate": {"default": false, "title": "Negate", "type": "boolean"}, "expression": {"title": "Expression", "type": "string"}}, "required": ["expression"], "title": "ExpressionParameterValidatorModel", "type": "object"}, "FilePatternDatasetCollectionDescription": {"properties": {"discover_via": {"const": "pattern", "title": "Discover Via", "type": "string"}, "format": {"anyOf": [{"type": "string"}, {"type": "null"}], "title": "Format"}, "visible": {"title": "Visible", "type": "boolean"}, "assign_primary_output": {"title": "Assign Primary Output", "type": "boolean"}, "directory": {"anyOf": [{"type": "string"}, {"type": "null"}], "title": "Directory"}, "recurse": {"title": "Recurse", "type": "boolean"}, "match_relative_path": {"title": "Match Relative Path", "type": "boolean"}, "sort_key": {"enum": ["filename", "name", "designation", "dbkey"], "title": "Sort Key", "type": "string"}, "sort_comp": {"enum": ["lexical", "numeric"], "title": "Sort Comp", "type": "string"}, "pattern": {"title": "Pattern", "type": "string"}}, "required": ["discover_via", "format", "visible", "assign_primary_output", "directory", "recurse", "match_relative_path", "sort_key", "sort_comp", "pattern"], "title": "FilePatternDatasetCollectionDescription", "type": "object"}, "FloatParameterModel": {"properties": {"name": {"description": "Parameter name. Used when referencing parameter in workflows or inside command templating.", "title": "Name", "type": "string"}, "parameter_type": {"const": "gx_float", "default": "gx_float", "title": "Parameter Type", "type": "string"}, "hidden": {"default": false, "title": "Hidden", "type": "boolean"}, "label": {"anyOf": [{"description": "Will be displayed on the tool page as the label of the parameter.", "type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "help": {"anyOf": [{"description": "Short bit of text, rendered on the tool form just below the associated field to provide information about the field.", "type": "string"}, {"type": "null"}], "default": null, "title": "Help"}, "argument": {"anyOf": [{"description": "If the parameter reflects just one command line argument of a certain tool, this tag should be set to that particular argument. It is rendered in parenthesis after the help section, and it will create the name attribute (if not given explicitly) from the argument attribute by stripping leading dashes and replacing all remaining dashes by underscores (e.g. if argument=\"--long-parameter\" then name=\"long_parameter\" is implicit).", "type": "string"}, {"type": "null"}], "default": null, "title": "Argument"}, "is_dynamic": {"default": false, "title": "Is Dynamic", "type": "boolean"}, "optional": {"default": false, "description": "If `false`, parameter must have a value.", "title": "Optional", "type": "boolean"}, "type": {"const": "float", "title": "Type", "type": "string"}, "value": {"anyOf": [{"type": "number"}, {"type": "null"}], "default": null, "title": "Value"}, "min": {"anyOf": [{"type": "number"}, {"type": "null"}], "default": null, "title": "Min"}, "max": {"anyOf": [{"type": "number"}, {"type": "null"}], "default": null, "title": "Max"}, "validators": {"default": [], "items": {"$ref": "#/$defs/InRangeParameterValidatorModel"}, "title": "Validators", "type": "array"}}, "required": ["name", "type"], "title": "FloatParameterModel", "type": "object"}, "GalaxyToolParameterModel": {"discriminator": {"mapping": {"baseurl": "#/$defs/BaseUrlParameterModel", "boolean": "#/$defs/BooleanParameterModel", "color": "#/$defs/ColorParameterModel", "conditional": "#/$defs/ConditionalParameterModel", "data": "#/$defs/DataParameterModel", "data_collection": "#/$defs/DataCollectionParameterModel", "data_column": "#/$defs/DataColumnParameterModel", "directory": "#/$defs/DirectoryUriParameterModel", "drill_down": "#/$defs/DrillDownParameterModel", "float": "#/$defs/FloatParameterModel", "genomebuild": "#/$defs/GenomeBuildParameterModel", "group_tag": "#/$defs/GroupTagParameterModel", "hidden": "#/$defs/HiddenParameterModel", "integer": "#/$defs/IntegerParameterModel", "repeat": "#/$defs/RepeatParameterModel", "rules": "#/$defs/RulesParameterModel", "section": "#/$defs/SectionParameterModel", "select": "#/$defs/SelectParameterModel", "text": "#/$defs/TextParameterModel"}, "propertyName": "type"}, "oneOf": [{"$ref": "#/$defs/TextParameterModel"}, {"$ref": "#/$defs/IntegerParameterModel"}, {"$ref": "#/$defs/FloatParameterModel"}, {"$ref": "#/$defs/BooleanParameterModel"}, {"$ref": "#/$defs/HiddenParameterModel"}, {"$ref": "#/$defs/SelectParameterModel"}, {"$ref": "#/$defs/DataParameterModel"}, {"$ref": "#/$defs/DataCollectionParameterModel"}, {"$ref": "#/$defs/DataColumnParameterModel"}, {"$ref": "#/$defs/DirectoryUriParameterModel"}, {"$ref": "#/$defs/RulesParameterModel"}, {"$ref": "#/$defs/DrillDownParameterModel"}, {"$ref": "#/$defs/GroupTagParameterModel"}, {"$ref": "#/$defs/BaseUrlParameterModel"}, {"$ref": "#/$defs/GenomeBuildParameterModel"}, {"$ref": "#/$defs/ColorParameterModel"}, {"$ref": "#/$defs/ConditionalParameterModel"}, {"$ref": "#/$defs/RepeatParameterModel"}, {"$ref": "#/$defs/SectionParameterModel"}], "title": "GalaxyToolParameterModel"}, "GenomeBuildParameterModel": {"properties": {"name": {"description": "Parameter name. Used when referencing parameter in workflows or inside command templating.", "title": "Name", "type": "string"}, "parameter_type": {"const": "gx_genomebuild", "default": "gx_genomebuild", "title": "Parameter Type", "type": "string"}, "hidden": {"default": false, "title": "Hidden", "type": "boolean"}, "label": {"anyOf": [{"description": "Will be displayed on the tool page as the label of the parameter.", "type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "help": {"anyOf": [{"description": "Short bit of text, rendered on the tool form just below the associated field to provide information about the field.", "type": "string"}, {"type": "null"}], "default": null, "title": "Help"}, "argument": {"anyOf": [{"description": "If the parameter reflects just one command line argument of a certain tool, this tag should be set to that particular argument. It is rendered in parenthesis after the help section, and it will create the name attribute (if not given explicitly) from the argument attribute by stripping leading dashes and replacing all remaining dashes by underscores (e.g. if argument=\"--long-parameter\" then name=\"long_parameter\" is implicit).", "type": "string"}, {"type": "null"}], "default": null, "title": "Argument"}, "is_dynamic": {"default": false, "title": "Is Dynamic", "type": "boolean"}, "optional": {"default": false, "description": "If `false`, parameter must have a value.", "title": "Optional", "type": "boolean"}, "type": {"const": "genomebuild", "title": "Type", "type": "string"}, "multiple": {"title": "Multiple", "type": "boolean"}}, "required": ["name", "type", "multiple"], "title": "GenomeBuildParameterModel", "type": "object"}, "GroupTagParameterModel": {"properties": {"name": {"description": "Parameter name. Used when referencing parameter in workflows or inside command templating.", "title": "Name", "type": "string"}, "parameter_type": {"const": "gx_group_tag", "default": "gx_group_tag", "title": "Parameter Type", "type": "string"}, "hidden": {"default": false, "title": "Hidden", "type": "boolean"}, "label": {"anyOf": [{"description": "Will be displayed on the tool page as the label of the parameter.", "type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "help": {"anyOf": [{"description": "Short bit of text, rendered on the tool form just below the associated field to provide information about the field.", "type": "string"}, {"type": "null"}], "default": null, "title": "Help"}, "argument": {"anyOf": [{"description": "If the parameter reflects just one command line argument of a certain tool, this tag should be set to that particular argument. It is rendered in parenthesis after the help section, and it will create the name attribute (if not given explicitly) from the argument attribute by stripping leading dashes and replacing all remaining dashes by underscores (e.g. if argument=\"--long-parameter\" then name=\"long_parameter\" is implicit).", "type": "string"}, {"type": "null"}], "default": null, "title": "Argument"}, "is_dynamic": {"default": false, "title": "Is Dynamic", "type": "boolean"}, "optional": {"default": false, "description": "If `false`, parameter must have a value.", "title": "Optional", "type": "boolean"}, "type": {"const": "group_tag", "title": "Type", "type": "string"}, "multiple": {"title": "Multiple", "type": "boolean"}}, "required": ["name", "type", "multiple"], "title": "GroupTagParameterModel", "type": "object"}, "HelpContent": {"properties": {"format": {"enum": ["restructuredtext", "plain_text", "markdown"], "title": "Format", "type": "string"}, "content": {"title": "Content", "type": "string"}}, "required": ["format", "content"], "title": "HelpContent", "type": "object"}, "HiddenParameterModel": {"properties": {"name": {"description": "Parameter name. Used when referencing parameter in workflows or inside command templating.", "title": "Name", "type": "string"}, "parameter_type": {"const": "gx_hidden", "default": "gx_hidden", "title": "Parameter Type", "type": "string"}, "hidden": {"default": false, "title": "Hidden", "type": "boolean"}, "label": {"anyOf": [{"description": "Will be displayed on the tool page as the label of the parameter.", "type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "help": {"anyOf": [{"description": "Short bit of text, rendered on the tool form just below the associated field to provide information about the field.", "type": "string"}, {"type": "null"}], "default": null, "title": "Help"}, "argument": {"anyOf": [{"description": "If the parameter reflects just one command line argument of a certain tool, this tag should be set to that particular argument. It is rendered in parenthesis after the help section, and it will create the name attribute (if not given explicitly) from the argument attribute by stripping leading dashes and replacing all remaining dashes by underscores (e.g. if argument=\"--long-parameter\" then name=\"long_parameter\" is implicit).", "type": "string"}, {"type": "null"}], "default": null, "title": "Argument"}, "is_dynamic": {"default": false, "title": "Is Dynamic", "type": "boolean"}, "optional": {"default": false, "description": "If `false`, parameter must have a value.", "title": "Optional", "type": "boolean"}, "type": {"const": "hidden", "title": "Type", "type": "string"}, "value": {"anyOf": [{"type": "string"}, {"type": "null"}], "title": "Value"}, "validators": {"default": [], "items": {"anyOf": [{"$ref": "#/$defs/LengthParameterValidatorModel"}, {"$ref": "#/$defs/RegexParameterValidatorModel"}, {"$ref": "#/$defs/ExpressionParameterValidatorModel"}, {"$ref": "#/$defs/EmptyFieldParameterValidatorModel"}]}, "title": "Validators", "type": "array"}}, "required": ["name", "type", "value"], "title": "HiddenParameterModel", "type": "object"}, "InRangeParameterValidatorModel": {"additionalProperties": false, "properties": {"type": {"const": "in_range", "default": "in_range", "title": "Type", "type": "string"}, "message": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Message"}, "implicit": {"default": false, "title": "Implicit", "type": "boolean"}, "min": {"anyOf": [{"type": "number"}, {"type": "integer"}, {"type": "null"}], "default": null, "title": "Min"}, "max": {"anyOf": [{"type": "number"}, {"type": "integer"}, {"type": "null"}], "default": null, "title": "Max"}, "exclude_min": {"default": false, "title": "Exclude Min", "type": "boolean"}, "exclude_max": {"default": false, "title": "Exclude Max", "type": "boolean"}, "negate": {"default": false, "title": "Negate", "type": "boolean"}}, "title": "InRangeParameterValidatorModel", "type": "object"}, "IncomingToolOutputCollection": {"properties": {"name": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "description": "Parameter name. Used when referencing parameter in workflows.", "title": "Name"}, "label": {"anyOf": [{"description": "Output label. Will be used as dataset name in history.", "type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "hidden": {"anyOf": [{"type": "boolean"}, {"type": "null"}], "default": null, "description": "If true, the output will not be shown in the history.", "title": "Hidden"}, "type": {"const": "collection", "title": "Type", "type": "string"}, "structure": {"$ref": "#/$defs/ToolOutputCollectionStructure"}}, "required": ["type", "structure"], "title": "IncomingToolOutputCollection", "type": "object"}, "IncomingToolOutputDataset": {"properties": {"name": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "description": "Parameter name. Used when referencing parameter in workflows.", "title": "Name"}, "label": {"anyOf": [{"description": "Output label. Will be used as dataset name in history.", "type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "hidden": {"anyOf": [{"type": "boolean"}, {"type": "null"}], "default": null, "description": "If true, the output will not be shown in the history.", "title": "Hidden"}, "type": {"const": "data", "title": "Type", "type": "string"}, "format": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "description": "The short name for the output datatype.", "title": "Format"}, "format_source": {"anyOf": [{"description": "This sets the data type of the output dataset(s) to be the same format as that of the specified tool input.", "type": "string"}, {"type": "null"}], "default": null, "title": "Format Source"}, "metadata_source": {"anyOf": [{"description": "This copies the metadata information from the tool\u2019s input dataset to serve as default for information that cannot be detected from the output. One prominent use case is interval data with a non-standard column order that cannot be deduced from a header line, but which is known to be identical in the input and output datasets.", "type": "string"}, {"type": "null"}], "default": null, "title": "Metadata Source"}, "discover_datasets": {"anyOf": [{"items": {"anyOf": [{"$ref": "#/$defs/FilePatternDatasetCollectionDescription"}, {"$ref": "#/$defs/ToolProvidedMetadataDatasetCollection"}]}, "type": "array"}, {"type": "null"}], "default": null, "title": "Discover Datasets"}, "from_work_dir": {"anyOf": [{"description": "Relative path to a file produced by the tool in its working directory. Output\u2019s contents are set to this file\u2019s contents.", "title": "from_work_dir", "type": "string"}, {"type": "null"}], "default": null, "title": "From Work Dir"}}, "required": ["type"], "title": "IncomingToolOutputDataset", "type": "object"}, "IntegerParameterModel": {"properties": {"name": {"description": "Parameter name. Used when referencing parameter in workflows or inside command templating.", "title": "Name", "type": "string"}, "parameter_type": {"const": "gx_integer", "default": "gx_integer", "title": "Parameter Type", "type": "string"}, "hidden": {"default": false, "title": "Hidden", "type": "boolean"}, "label": {"anyOf": [{"description": "Will be displayed on the tool page as the label of the parameter.", "type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "help": {"anyOf": [{"description": "Short bit of text, rendered on the tool form just below the associated field to provide information about the field.", "type": "string"}, {"type": "null"}], "default": null, "title": "Help"}, "argument": {"anyOf": [{"description": "If the parameter reflects just one command line argument of a certain tool, this tag should be set to that particular argument. It is rendered in parenthesis after the help section, and it will create the name attribute (if not given explicitly) from the argument attribute by stripping leading dashes and replacing all remaining dashes by underscores (e.g. if argument=\"--long-parameter\" then name=\"long_parameter\" is implicit).", "type": "string"}, {"type": "null"}], "default": null, "title": "Argument"}, "is_dynamic": {"default": false, "title": "Is Dynamic", "type": "boolean"}, "optional": {"title": "Optional", "type": "boolean"}, "type": {"const": "integer", "title": "Type", "type": "string"}, "value": {"anyOf": [{"type": "integer"}, {"type": "null"}], "default": null, "title": "Value"}, "min": {"anyOf": [{"type": "integer"}, {"type": "null"}], "default": null, "title": "Min"}, "max": {"anyOf": [{"type": "integer"}, {"type": "null"}], "default": null, "title": "Max"}, "validators": {"default": [], "items": {"$ref": "#/$defs/InRangeParameterValidatorModel"}, "title": "Validators", "type": "array"}}, "required": ["name", "optional", "type"], "title": "IntegerParameterModel", "type": "object"}, "JavascriptRequirement": {"properties": {"type": {"const": "javascript", "title": "Type", "type": "string"}, "expression_lib": {"anyOf": [{"items": {"description": "Provide Javascript/ECMAScript 5.1 code here that will be available for expressions inside the `shell_command` field.", "examples": ["function pickValue() {\n    if (inputs.conditional_parameter.test_parameter == \"a\") {\n        return inputs.conditional_parameter.integer_parameter\n    } else {\n        return inputs.conditional_parameter.boolean_parameter\n    }\n}"], "title": "expression_lib", "type": "string"}, "type": "array"}, {"type": "null"}], "title": "Expression Lib"}}, "required": ["type", "expression_lib"], "title": "JavascriptRequirement", "type": "object"}, "LabelValue": {"properties": {"label": {"title": "Label", "type": "string"}, "value": {"title": "Value", "type": "string"}, "selected": {"title": "Selected", "type": "boolean"}}, "required": ["label", "value", "selected"], "title": "LabelValue", "type": "object"}, "LengthParameterValidatorModel": {"additionalProperties": false, "properties": {"type": {"const": "length", "default": "length", "title": "Type", "type": "string"}, "message": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Message"}, "implicit": {"default": false, "title": "Implicit", "type": "boolean"}, "min": {"anyOf": [{"type": "integer"}, {"type": "null"}], "default": null, "title": "Min"}, "max": {"anyOf": [{"type": "integer"}, {"type": "null"}], "default": null, "title": "Max"}, "negate": {"default": false, "title": "Negate", "type": "boolean"}}, "title": "LengthParameterValidatorModel", "type": "object"}, "NoOptionsParameterValidatorModel": {"additionalProperties": false, "properties": {"type": {"const": "no_options", "default": "no_options", "title": "Type", "type": "string"}, "message": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Message"}, "implicit": {"default": false, "title": "Implicit", "type": "boolean"}, "negate": {"default": false, "title": "Negate", "type": "boolean"}}, "title": "NoOptionsParameterValidatorModel", "type": "object"}, "RegexParameterValidatorModel": {"additionalProperties": false, "description": "Check if a regular expression **matches** the value, i.e. appears\nat the beginning of the value. To enforce a match of the complete value use\n``$`` at the end of the expression. The expression is given is the content\nof the validator tag. Note that for ``selects`` each option is checked\nseparately.", "properties": {"type": {"const": "regex", "default": "regex", "title": "Type", "type": "string"}, "message": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Message"}, "implicit": {"default": false, "title": "Implicit", "type": "boolean"}, "negate": {"default": false, "title": "Negate", "type": "boolean"}, "expression": {"title": "Expression", "type": "string"}}, "required": ["expression"], "title": "RegexParameterValidatorModel", "type": "object"}, "RepeatParameterModel": {"properties": {"name": {"description": "Parameter name. Used when referencing parameter in workflows or inside command templating.", "title": "Name", "type": "string"}, "parameter_type": {"const": "gx_repeat", "default": "gx_repeat", "title": "Parameter Type", "type": "string"}, "hidden": {"default": false, "title": "Hidden", "type": "boolean"}, "label": {"anyOf": [{"description": "Will be displayed on the tool page as the label of the parameter.", "type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "help": {"anyOf": [{"description": "Short bit of text, rendered on the tool form just below the associated field to provide information about the field.", "type": "string"}, {"type": "null"}], "default": null, "title": "Help"}, "argument": {"anyOf": [{"description": "If the parameter reflects just one command line argument of a certain tool, this tag should be set to that particular argument. It is rendered in parenthesis after the help section, and it will create the name attribute (if not given explicitly) from the argument attribute by stripping leading dashes and replacing all remaining dashes by underscores (e.g. if argument=\"--long-parameter\" then name=\"long_parameter\" is implicit).", "type": "string"}, {"type": "null"}], "default": null, "title": "Argument"}, "is_dynamic": {"default": false, "title": "Is Dynamic", "type": "boolean"}, "optional": {"default": false, "description": "If `false`, parameter must have a value.", "title": "Optional", "type": "boolean"}, "type": {"const": "repeat", "title": "Type", "type": "string"}, "parameters": {"items": {"anyOf": [{"$ref": "#/$defs/CwlIntegerParameterModel"}, {"$ref": "#/$defs/CwlFloatParameterModel"}, {"$ref": "#/$defs/CwlStringParameterModel"}, {"$ref": "#/$defs/CwlBooleanParameterModel"}, {"$ref": "#/$defs/CwlNullParameterModel"}, {"$ref": "#/$defs/CwlFileParameterModel"}, {"$ref": "#/$defs/CwlDirectoryParameterModel"}, {"$ref": "#/$defs/CwlUnionParameterModel"}, {"$ref": "#/$defs/TextParameterModel"}, {"$ref": "#/$defs/IntegerParameterModel"}, {"$ref": "#/$defs/FloatParameterModel"}, {"$ref": "#/$defs/BooleanParameterModel"}, {"$ref": "#/$defs/HiddenParameterModel"}, {"$ref": "#/$defs/SelectParameterModel"}, {"$ref": "#/$defs/DataParameterModel"}, {"$ref": "#/$defs/DataCollectionParameterModel"}, {"$ref": "#/$defs/DataColumnParameterModel"}, {"$ref": "#/$defs/DirectoryUriParameterModel"}, {"$ref": "#/$defs/RulesParameterModel"}, {"$ref": "#/$defs/DrillDownParameterModel"}, {"$ref": "#/$defs/GroupTagParameterModel"}, {"$ref": "#/$defs/BaseUrlParameterModel"}, {"$ref": "#/$defs/GenomeBuildParameterModel"}, {"$ref": "#/$defs/ColorParameterModel"}, {"$ref": "#/$defs/ConditionalParameterModel"}, {"$ref": "#/$defs/RepeatParameterModel"}, {"$ref": "#/$defs/SectionParameterModel"}]}, "title": "Parameters", "type": "array"}, "min": {"anyOf": [{"type": "integer"}, {"type": "null"}], "default": null, "title": "Min"}, "max": {"anyOf": [{"type": "integer"}, {"type": "null"}], "default": null, "title": "Max"}}, "required": ["name", "type", "parameters"], "title": "RepeatParameterModel", "type": "object"}, "ResourceRequirement": {"properties": {"type": {"const": "resource", "title": "Type", "type": "string"}, "cores_min": {"anyOf": [{"type": "number"}, {"type": "integer"}, {"type": "null"}], "title": "Cores Min"}, "cores_max": {"anyOf": [{"type": "number"}, {"type": "integer"}, {"type": "null"}], "title": "Cores Max"}, "ram_min": {"anyOf": [{"type": "number"}, {"type": "integer"}, {"type": "null"}], "title": "Ram Min"}, "ram_max": {"anyOf": [{"type": "number"}, {"type": "integer"}, {"type": "null"}], "title": "Ram Max"}, "tmpdir_min": {"anyOf": [{"type": "number"}, {"type": "integer"}, {"type": "null"}], "title": "Tmpdir Min"}, "tmpdir_max": {"anyOf": [{"type": "number"}, {"type": "integer"}, {"type": "null"}], "title": "Tmpdir Max"}, "cuda_version_min": {"anyOf": [{"type": "number"}, {"type": "integer"}, {"type": "null"}], "title": "Cuda Version Min"}, "cuda_compute_capability": {"anyOf": [{"type": "number"}, {"type": "integer"}, {"type": "null"}], "title": "Cuda Compute Capability"}, "gpu_memory_min": {"anyOf": [{"type": "number"}, {"type": "integer"}, {"type": "null"}], "title": "Gpu Memory Min"}, "cuda_device_count_min": {"anyOf": [{"type": "number"}, {"type": "integer"}, {"type": "null"}], "title": "Cuda Device Count Min"}, "cuda_device_count_max": {"anyOf": [{"type": "number"}, {"type": "integer"}, {"type": "null"}], "title": "Cuda Device Count Max"}, "shm_size": {"anyOf": [{"type": "number"}, {"type": "integer"}, {"type": "null"}], "title": "Shm Size"}}, "required": ["type", "cores_min", "cores_max", "ram_min", "ram_max", "tmpdir_min", "tmpdir_max", "cuda_version_min", "cuda_compute_capability", "gpu_memory_min", "cuda_device_count_min", "cuda_device_count_max", "shm_size"], "title": "ResourceRequirement", "type": "object"}, "RulesParameterModel": {"properties": {"name": {"description": "Parameter name. Used when referencing parameter in workflows or inside command templating.", "title": "Name", "type": "string"}, "parameter_type": {"const": "gx_rules", "default": "gx_rules", "title": "Parameter Type", "type": "string"}, "hidden": {"default": false, "title": "Hidden", "type": "boolean"}, "label": {"anyOf": [{"description": "Will be displayed on the tool page as the label of the parameter.", "type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "help": {"anyOf": [{"description": "Short bit of text, rendered on the tool form just below the associated field to provide information about the field.", "type": "string"}, {"type": "null"}], "default": null, "title": "Help"}, "argument": {"anyOf": [{"description": "If the parameter reflects just one command line argument of a certain tool, this tag should be set to that particular argument. It is rendered in parenthesis after the help section, and it will create the name attribute (if not given explicitly) from the argument attribute by stripping leading dashes and replacing all remaining dashes by underscores (e.g. if argument=\"--long-parameter\" then name=\"long_parameter\" is implicit).", "type": "string"}, {"type": "null"}], "default": null, "title": "Argument"}, "is_dynamic": {"default": false, "title": "Is Dynamic", "type": "boolean"}, "optional": {"default": false, "description": "If `false`, parameter must have a value.", "title": "Optional", "type": "boolean"}, "type": {"const": "rules", "title": "Type", "type": "string"}}, "required": ["name", "type"], "title": "RulesParameterModel", "type": "object"}, "SectionParameterModel": {"properties": {"name": {"description": "Parameter name. Used when referencing parameter in workflows or inside command templating.", "title": "Name", "type": "string"}, "parameter_type": {"const": "gx_section", "default": "gx_section", "title": "Parameter Type", "type": "string"}, "hidden": {"default": false, "title": "Hidden", "type": "boolean"}, "label": {"anyOf": [{"description": "Will be displayed on the tool page as the label of the parameter.", "type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "help": {"anyOf": [{"description": "Short bit of text, rendered on the tool form just below the associated field to provide information about the field.", "type": "string"}, {"type": "null"}], "default": null, "title": "Help"}, "argument": {"anyOf": [{"description": "If the parameter reflects just one command line argument of a certain tool, this tag should be set to that particular argument. It is rendered in parenthesis after the help section, and it will create the name attribute (if not given explicitly) from the argument attribute by stripping leading dashes and replacing all remaining dashes by underscores (e.g. if argument=\"--long-parameter\" then name=\"long_parameter\" is implicit).", "type": "string"}, {"type": "null"}], "default": null, "title": "Argument"}, "is_dynamic": {"default": false, "title": "Is Dynamic", "type": "boolean"}, "optional": {"default": false, "description": "If `false`, parameter must have a value.", "title": "Optional", "type": "boolean"}, "type": {"const": "section", "title": "Type", "type": "string"}, "parameters": {"items": {"anyOf": [{"$ref": "#/$defs/CwlIntegerParameterModel"}, {"$ref": "#/$defs/CwlFloatParameterModel"}, {"$ref": "#/$defs/CwlStringParameterModel"}, {"$ref": "#/$defs/CwlBooleanParameterModel"}, {"$ref": "#/$defs/CwlNullParameterModel"}, {"$ref": "#/$defs/CwlFileParameterModel"}, {"$ref": "#/$defs/CwlDirectoryParameterModel"}, {"$ref": "#/$defs/CwlUnionParameterModel"}, {"$ref": "#/$defs/TextParameterModel"}, {"$ref": "#/$defs/IntegerParameterModel"}, {"$ref": "#/$defs/FloatParameterModel"}, {"$ref": "#/$defs/BooleanParameterModel"}, {"$ref": "#/$defs/HiddenParameterModel"}, {"$ref": "#/$defs/SelectParameterModel"}, {"$ref": "#/$defs/DataParameterModel"}, {"$ref": "#/$defs/DataCollectionParameterModel"}, {"$ref": "#/$defs/DataColumnParameterModel"}, {"$ref": "#/$defs/DirectoryUriParameterModel"}, {"$ref": "#/$defs/RulesParameterModel"}, {"$ref": "#/$defs/DrillDownParameterModel"}, {"$ref": "#/$defs/GroupTagParameterModel"}, {"$ref": "#/$defs/BaseUrlParameterModel"}, {"$ref": "#/$defs/GenomeBuildParameterModel"}, {"$ref": "#/$defs/ColorParameterModel"}, {"$ref": "#/$defs/ConditionalParameterModel"}, {"$ref": "#/$defs/RepeatParameterModel"}, {"$ref": "#/$defs/SectionParameterModel"}]}, "title": "Parameters", "type": "array"}}, "required": ["name", "type", "parameters"], "title": "SectionParameterModel", "type": "object"}, "SelectParameterModel": {"properties": {"name": {"description": "Parameter name. Used when referencing parameter in workflows or inside command templating.", "title": "Name", "type": "string"}, "parameter_type": {"const": "gx_select", "default": "gx_select", "title": "Parameter Type", "type": "string"}, "hidden": {"default": false, "title": "Hidden", "type": "boolean"}, "label": {"anyOf": [{"description": "Will be displayed on the tool page as the label of the parameter.", "type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "help": {"anyOf": [{"description": "Short bit of text, rendered on the tool form just below the associated field to provide information about the field.", "type": "string"}, {"type": "null"}], "default": null, "title": "Help"}, "argument": {"anyOf": [{"description": "If the parameter reflects just one command line argument of a certain tool, this tag should be set to that particular argument. It is rendered in parenthesis after the help section, and it will create the name attribute (if not given explicitly) from the argument attribute by stripping leading dashes and replacing all remaining dashes by underscores (e.g. if argument=\"--long-parameter\" then name=\"long_parameter\" is implicit).", "type": "string"}, {"type": "null"}], "default": null, "title": "Argument"}, "is_dynamic": {"default": false, "title": "Is Dynamic", "type": "boolean"}, "optional": {"default": false, "description": "If `false`, parameter must have a value.", "title": "Optional", "type": "boolean"}, "type": {"const": "select", "title": "Type", "type": "string"}, "options": {"anyOf": [{"items": {"$ref": "#/$defs/LabelValue"}, "type": "array"}, {"type": "null"}], "default": null, "title": "Options"}, "multiple": {"default": false, "title": "Multiple", "type": "boolean"}, "validators": {"default": [], "items": {"$ref": "#/$defs/NoOptionsParameterValidatorModel"}, "title": "Validators", "type": "array"}}, "required": ["name", "type"], "title": "SelectParameterModel", "type": "object"}, "TextParameterModel": {"properties": {"name": {"description": "Parameter name. Used when referencing parameter in workflows or inside command templating.", "title": "Name", "type": "string"}, "parameter_type": {"const": "gx_text", "default": "gx_text", "title": "Parameter Type", "type": "string"}, "hidden": {"default": false, "title": "Hidden", "type": "boolean"}, "label": {"anyOf": [{"description": "Will be displayed on the tool page as the label of the parameter.", "type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "help": {"anyOf": [{"description": "Short bit of text, rendered on the tool form just below the associated field to provide information about the field.", "type": "string"}, {"type": "null"}], "default": null, "title": "Help"}, "argument": {"anyOf": [{"description": "If the parameter reflects just one command line argument of a certain tool, this tag should be set to that particular argument. It is rendered in parenthesis after the help section, and it will create the name attribute (if not given explicitly) from the argument attribute by stripping leading dashes and replacing all remaining dashes by underscores (e.g. if argument=\"--long-parameter\" then name=\"long_parameter\" is implicit).", "type": "string"}, {"type": "null"}], "default": null, "title": "Argument"}, "is_dynamic": {"default": false, "title": "Is Dynamic", "type": "boolean"}, "optional": {"default": false, "description": "If `false`, parameter must have a value.", "title": "Optional", "type": "boolean"}, "type": {"const": "text", "title": "Type", "type": "string"}, "area": {"default": false, "title": "Area", "type": "boolean"}, "value": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Value"}, "default_options": {"default": [], "items": {"$ref": "#/$defs/LabelValue"}, "title": "Default Options", "type": "array"}, "validators": {"default": [], "items": {"anyOf": [{"$ref": "#/$defs/LengthParameterValidatorModel"}, {"$ref": "#/$defs/RegexParameterValidatorModel"}, {"$ref": "#/$defs/ExpressionParameterValidatorModel"}, {"$ref": "#/$defs/EmptyFieldParameterValidatorModel"}]}, "title": "Validators", "type": "array"}}, "required": ["name", "type"], "title": "TextParameterModel", "type": "object"}, "ToolOutputBoolean": {"properties": {"name": {"description": "Parameter name. Used when referencing parameter in workflows.", "title": "Name"}, "label": {"anyOf": [{"description": "Output label. Will be used as dataset name in history.", "type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "hidden": {"description": "If true, the output will not be shown in the history.", "title": "Hidden"}, "type": {"const": "boolean", "title": "Type", "type": "string"}}, "required": ["name", "hidden", "type"], "title": "ToolOutputBoolean", "type": "object"}, "ToolOutputCollectionStructure": {"properties": {"collection_type": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Collection Type"}, "collection_type_source": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Collection Type Source"}, "collection_type_from_rules": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Collection Type From Rules"}, "structured_like": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Structured Like"}, "discover_datasets": {"anyOf": [{"items": {"anyOf": [{"$ref": "#/$defs/FilePatternDatasetCollectionDescription"}, {"$ref": "#/$defs/ToolProvidedMetadataDatasetCollection"}]}, "type": "array"}, {"type": "null"}], "default": null, "title": "Discover Datasets"}}, "title": "ToolOutputCollectionStructure", "type": "object"}, "ToolOutputFloat": {"properties": {"name": {"description": "Parameter name. Used when referencing parameter in workflows.", "title": "Name"}, "label": {"anyOf": [{"description": "Output label. Will be used as dataset name in history.", "type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "hidden": {"description": "If true, the output will not be shown in the history.", "title": "Hidden"}, "type": {"const": "float", "title": "Type", "type": "string"}}, "required": ["name", "hidden", "type"], "title": "ToolOutputFloat", "type": "object"}, "ToolOutputInteger": {"properties": {"name": {"description": "Parameter name. Used when referencing parameter in workflows.", "title": "Name"}, "label": {"anyOf": [{"description": "Output label. Will be used as dataset name in history.", "type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "hidden": {"description": "If true, the output will not be shown in the history.", "title": "Hidden"}, "type": {"const": "integer", "title": "Type", "type": "string"}}, "required": ["name", "hidden", "type"], "title": "ToolOutputInteger", "type": "object"}, "ToolOutputText": {"properties": {"name": {"description": "Parameter name. Used when referencing parameter in workflows.", "title": "Name"}, "label": {"anyOf": [{"description": "Output label. Will be used as dataset name in history.", "type": "string"}, {"type": "null"}], "default": null, "title": "Label"}, "hidden": {"description": "If true, the output will not be shown in the history.", "title": "Hidden"}, "type": {"const": "text", "title": "Type", "type": "string"}}, "required": ["name", "hidden", "type"], "title": "ToolOutputText", "type": "object"}, "ToolProvidedMetadataDatasetCollection": {"properties": {"discover_via": {"const": "tool_provided_metadata", "title": "Discover Via", "type": "string"}, "format": {"anyOf": [{"type": "string"}, {"type": "null"}], "title": "Format"}, "visible": {"title": "Visible", "type": "boolean"}, "assign_primary_output": {"title": "Assign Primary Output", "type": "boolean"}, "directory": {"anyOf": [{"type": "string"}, {"type": "null"}], "title": "Directory"}, "recurse": {"title": "Recurse", "type": "boolean"}, "match_relative_path": {"title": "Match Relative Path", "type": "boolean"}}, "required": ["discover_via", "format", "visible", "assign_primary_output", "directory", "recurse", "match_relative_path"], "title": "ToolProvidedMetadataDatasetCollection", "type": "object"}, "XrefDict": {"properties": {"value": {"title": "Value", "type": "string"}, "type": {"title": "Type", "type": "string"}}, "required": ["value", "type"], "title": "XrefDict", "type": "object"}}, "properties": {"class": {"const": "GalaxyUserTool", "title": "Class", "type": "string"}, "id": {"description": "Unique identifier for the tool. Should be all lower-case and should not include whitespace.", "examples": ["my-cool-tool"], "maxLength": 255, "minLength": 3, "title": "Id", "type": "string"}, "version": {"description": "Version for the tool.", "examples": ["0.1.0"], "title": "Version", "type": "string"}, "name": {"description": "The name of the tool, displayed in the tool menu. This is not the same as the tool id, which is a unique identifier for the tool.", "title": "Name", "type": "string"}, "description": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "description": "The description is displayed in the tool menu immediately following the hyperlink for the tool.", "title": "Description"}, "container": {"description": "Container image to use for this tool.", "examples": ["quay.io/biocontainers/python:3.13"], "title": "Container", "type": "string"}, "requirements": {"anyOf": [{"items": {"anyOf": [{"$ref": "#/$defs/JavascriptRequirement"}, {"$ref": "#/$defs/ResourceRequirement"}, {"$ref": "#/$defs/ContainerRequirement"}]}, "type": "array"}, {"type": "null"}], "default": [], "description": "A list of requirements needed to execute this tool. These can be javascript expressions, resource requirements or container images.", "title": "Requirements"}, "shell_command": {"description": "A string that contains the command to be executed. Parameters can be referenced inside $().", "examples": ["head -n '$(inputs.n_lines)' '$(inputs.data_input.path)'"], "title": "shell_command", "type": "string"}, "inputs": {"default": [], "items": {"$ref": "#/$defs/GalaxyToolParameterModel"}, "title": "Inputs", "type": "array"}, "outputs": {"default": [], "items": {"discriminator": {"mapping": {"boolean": "#/$defs/ToolOutputBoolean", "collection": "#/$defs/IncomingToolOutputCollection", "data": "#/$defs/IncomingToolOutputDataset", "float": "#/$defs/ToolOutputFloat", "integer": "#/$defs/ToolOutputInteger", "text": "#/$defs/ToolOutputText"}, "propertyName": "type"}, "oneOf": [{"$ref": "#/$defs/IncomingToolOutputDataset"}, {"$ref": "#/$defs/IncomingToolOutputCollection"}, {"$ref": "#/$defs/ToolOutputText"}, {"$ref": "#/$defs/ToolOutputInteger"}, {"$ref": "#/$defs/ToolOutputFloat"}, {"$ref": "#/$defs/ToolOutputBoolean"}]}, "title": "Outputs", "type": "array"}, "citations": {"anyOf": [{"items": {"$ref": "#/$defs/Citation"}, "type": "array"}, {"type": "null"}], "default": null, "title": "Citations"}, "license": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "description": "A full URI or a a short [SPDX](https://spdx.org/licenses/) identifier for a license for this tool wrapper. The tool wrapper license can be independent of the underlying tool license. This license covers the tool yaml and associated scripts shipped with the tool.", "examples": ["MIT"], "title": "License"}, "edam_operations": {"anyOf": [{"items": {"type": "string"}, "type": "array"}, {"type": "null"}], "default": null, "title": "Edam Operations"}, "edam_topics": {"anyOf": [{"items": {"type": "string"}, "type": "array"}, {"type": "null"}], "default": null, "title": "Edam Topics"}, "xrefs": {"anyOf": [{"items": {"$ref": "#/$defs/XrefDict"}, "type": "array"}, {"type": "null"}], "default": null, "title": "Xrefs"}, "help": {"anyOf": [{"$ref": "#/$defs/HelpContent"}, {"type": "null"}], "default": null, "description": "Help text shown below the tool interface."}}, "required": ["class", "id", "version", "name", "container", "shell_command"], "title": "UserToolSource", "type": "object"}
\ No newline at end of file
diff --git a/client/src/components/Tool/YamlJs.ts b/client/src/components/Tool/YamlJs.ts
index 849b78478b7..36ad5aa0f88 100644
--- a/client/src/components/Tool/YamlJs.ts
+++ b/client/src/components/Tool/YamlJs.ts
@@ -311,6 +311,44 @@ function attachDiagnosticsProvider(
     });
 }
 
+function quickInfoToMarkdown(quickInfo: any, position: IPosition) {
+    const { displayParts, documentation, tags } = quickInfo;
+    const markdownText = [];
+
+    // Format displayParts as code
+    if (displayParts && displayParts.length > 0) {
+        const signature = displayParts.map((part: any) => part.text).join("");
+        markdownText.push({ value: "```ts\n" + signature + "\n```" });
+    }
+
+    // Add documentation text
+    if (documentation && documentation.length > 0) {
+        const docText = documentation.map((part: any) => part.text).join("");
+        markdownText.push({ value: docText });
+    }
+
+    // Add tag text (e.g. @description)
+    if (tags && tags.length > 0) {
+        tags.forEach((tag: any) => {
+            if (tag.text && Array.isArray(tag.text)) {
+                const tagText = tag.text.map((t: any) => t.text).join("");
+                markdownText.push({ value: `**@${tag.name}** — ${tagText}` });
+            } else if (typeof tag.text === "string") {
+                markdownText.push({ value: `**@${tag.name}** — ${tag.text}` });
+            }
+        });
+    }
+    return {
+        range: {
+            startLineNumber: position.lineNumber,
+            startColumn: position.column,
+            endLineNumber: position.lineNumber,
+            endColumn: position.column,
+        },
+        contents: markdownText,
+    };
+}
+
 async function provideHover(model: editor.ITextModel, position: IPosition) {
     const currentData = await modelForCurrentPosition(model, position);
     if (currentData) {
@@ -320,18 +358,7 @@ async function provideHover(model: editor.ITextModel, position: IPosition) {
             currentData.offset
         );
         if (quickInfo) {
-            return {
-                range: {
-                    startLineNumber: position.lineNumber,
-                    startColumn: position.column,
-                    endLineNumber: position.lineNumber,
-                    endColumn: position.column,
-                },
-                contents: [
-                    { value: quickInfo.displayParts.map((p: any) => p.text).join("") },
-                    { value: quickInfo.documentation },
-                ],
-            };
+            return quickInfoToMarkdown(quickInfo, position);
         }
     }
     return null;
diff --git a/client/src/components/User/Notifications/NotificationsPreferences.vue b/client/src/components/User/Notifications/NotificationsPreferences.vue
index 35326af4598..0018056bb4e 100644
--- a/client/src/components/User/Notifications/NotificationsPreferences.vue
+++ b/client/src/components/User/Notifications/NotificationsPreferences.vue
@@ -115,7 +115,7 @@ function onChannelChange(category: NotificationCategory, channel: NotificationCh
             h1
             :separator="props.embedded"
             inline
-            size="xl"
+            size="lg"
             class="notifications-preferences-header"
             :class="headerSize">
             Manage notifications preferences
diff --git a/client/src/components/User/ThemeSelector.vue b/client/src/components/User/ThemeSelector.vue
index d27dd058a11..1a1e96ee9de 100644
--- a/client/src/components/User/ThemeSelector.vue
+++ b/client/src/components/User/ThemeSelector.vue
@@ -11,7 +11,7 @@ const { config, isConfigLoaded } = useConfig();
 const show = ref(false);
 const currentValue = computed({
     get: () => {
-        return currentTheme;
+        return currentTheme.value;
     },
     set: (theme) => {
         setCurrentTheme(theme);
diff --git a/client/src/components/Workflow/Published/WorkflowInformation.vue b/client/src/components/Workflow/Published/WorkflowInformation.vue
index ded1a1f8628..b0a1b2df4ac 100644
--- a/client/src/components/Workflow/Published/WorkflowInformation.vue
+++ b/client/src/components/Workflow/Published/WorkflowInformation.vue
@@ -63,7 +63,7 @@ function hasDoi() {
 <template>
     <aside class="workflow-information">
         <hgroup>
-            <Heading h2 size="xl" class="mb-0">About This Workflow</Heading>
+            <Heading h2 size="lg" class="mb-0">About This Workflow</Heading>
             <span class="ml-2">
                 <span data-description="workflow name"> {{ workflowInfo.name }} </span> - Version
                 {{ workflowInfo.version }}
diff --git a/client/src/components/Workflow/Published/WorkflowPublished.vue b/client/src/components/Workflow/Published/WorkflowPublished.vue
index d76b1b2e001..78d38408199 100644
--- a/client/src/components/Workflow/Published/WorkflowPublished.vue
+++ b/client/src/components/Workflow/Published/WorkflowPublished.vue
@@ -124,13 +124,13 @@ defineExpose({
 
         <div id="center" class="container-root" :class="{ 'm-3': !props.quickView }">
             <div v-if="loading">
-                <Heading h1 separator size="xl">
+                <Heading h1 separator size="lg">
                     <FontAwesomeIcon :icon="faSpinner" spin />
                     Loading Workflow
                 </Heading>
             </div>
             <div v-else-if="hasError">
-                <Heading h1 separator size="xl"> Failed to load published Workflow </Heading>
+                <Heading h1 separator size="lg"> Failed to load published Workflow </Heading>
 
                 <BAlert show variant="danger">
                     {{ errorMessage }}
@@ -138,7 +138,7 @@ defineExpose({
             </div>
             <div v-else-if="workflowInfo" class="published-workflow">
                 <div v-if="props.showHeading || props.showButtons" class="workflow-header">
-                    <Heading v-if="props.showHeading" h1 separator inline size="xl" class="flex-grow-1 mb-0">
+                    <Heading v-if="props.showHeading" h1 separator inline size="lg" class="flex-grow-1 mb-0">
                         <span v-if="props.showAbout"> Workflow Preview </span>
                         <span v-else> {{ workflowInfo.name }} </span>
                     </Heading>
diff --git a/client/src/components/Workflow/WorkflowCreate.vue b/client/src/components/Workflow/WorkflowCreate.vue
index 4877d3c4e50..811a2a0cc39 100644
--- a/client/src/components/Workflow/WorkflowCreate.vue
+++ b/client/src/components/Workflow/WorkflowCreate.vue
@@ -43,7 +43,7 @@ async function onCreate() {
 
 <template>
     <div>
-        <Heading v-if="!showHeading" h1 separator size="xl">Create workflow</Heading>
+        <Heading v-if="!showHeading" h1 separator size="lg">Create workflow</Heading>
 
         <label for="workflow-name-input" class="font-weight-bold"> Workflow name </label>
         <BFormInput
diff --git a/client/yarn.lock b/client/yarn.lock
index 30a18f34a05..996c996134c 100644
--- a/client/yarn.lock
+++ b/client/yarn.lock
@@ -8664,10 +8664,10 @@ monaco-worker-manager@^2.0.0:
   resolved "https://registry.yarnpkg.com/monaco-worker-manager/-/monaco-worker-manager-2.0.1.tgz#f67c54dfca34ed4b225d5de84e77b24b4e36de8a"
   integrity sha512-kdPL0yvg5qjhKPNVjJoym331PY/5JC11aPJXtCZNwWRvBr6jhkIamvYAyiY5P1AWFmNOy0aRDRoMdZfa71h8kg==
 
-monaco-yaml@^5.2.3:
-  version "5.2.3"
-  resolved "https://registry.yarnpkg.com/monaco-yaml/-/monaco-yaml-5.2.3.tgz#990fcf697bfa54e684a2d2f7df6d81a889843db4"
-  integrity sha512-GEplKC+YYmS0TOlJdv0FzbqkDN/IG2FSwEw+95myECVxTlhty2amwERYjzvorvJXmIagP1grd3Lleq7aQEJpPg==
+monaco-yaml@^5.4.0:
+  version "5.4.0"
+  resolved "https://registry.yarnpkg.com/monaco-yaml/-/monaco-yaml-5.4.0.tgz#c0ed6226c710c32c509e7c316c9a45f004862088"
+  integrity sha512-tuBVDy1KAPrgO905GHTItu8AaA5bIzF5S4X0JVRAE/D66FpRhkDUk7tKi5bwKMVTTugtpMLsXN4ewh4CgE/FtQ==
   dependencies:
     jsonc-parser "^3.0.0"
     monaco-languageserver-types "^0.4.0"
@@ -8675,7 +8675,7 @@ monaco-yaml@^5.2.3:
     monaco-types "^0.1.0"
     monaco-worker-manager "^2.0.0"
     path-browserify "^1.0.0"
-    prettier "^2.0.0"
+    prettier "^3.0.0"
     vscode-languageserver-textdocument "^1.0.0"
     vscode-languageserver-types "^3.0.0"
     vscode-uri "^3.0.0"
@@ -9652,11 +9652,16 @@ prelude-ls@~1.1.2:
   resolved "https://registry.npmjs.org/prettier/-/prettier-2.7.1.tgz"
   integrity sha512-ujppO+MkdPqoVINuDFDRLClm7D78qbDt0/NR+wp5FqEZOoTNAjPHWj17QRhu7geIHJfcNhRk1XVQmF8Bp3ye+g==
 
-prettier@^2.0.0, prettier@^2.8.8:
+prettier@^2.8.8:
   version "2.8.8"
   resolved "https://registry.yarnpkg.com/prettier/-/prettier-2.8.8.tgz#e8c5d7e98a4305ffe3de2e1fc4aca1a71c28b1da"
   integrity sha512-tdN8qQGvNjw4CHbY+XXk0JgCXn9QiF21a55rBe5LJAU+kDyC4WQn4+awm2Xfk2lQMk5fKup9XgzTZtGkjBdP9Q==
 
+prettier@^3.0.0:
+  version "3.5.3"
+  resolved "https://registry.yarnpkg.com/prettier/-/prettier-3.5.3.tgz#4fc2ce0d657e7a02e602549f053b239cb7dfe1b5"
+  integrity sha512-QQtaxnoDJeAkDvDKWCLiwIXkTgRhwYDEQCghU9Z6q03iyek/rxRh/2lC3HB7P8sWT2xC/y5JDctPLBIGzHKbhw==
+
 pretty-bytes@^6.1.1:
   version "6.1.1"
   resolved "https://registry.yarnpkg.com/pretty-bytes/-/pretty-bytes-6.1.1.tgz#38cd6bb46f47afbf667c202cfc754bffd2016a3b"
diff --git a/config/plugins/visualizations/tabulator/config/tabulator.xml b/config/plugins/visualizations/tabulator/config/tabulator.xml
index 990878b02a0..964e9ee9a32 100644
--- a/config/plugins/visualizations/tabulator/config/tabulator.xml
+++ b/config/plugins/visualizations/tabulator/config/tabulator.xml
@@ -18,7 +18,7 @@
         <param required="true">dataset_id</param>
     </params>
     <requirements>
-        <requirement type="npm" version="0.0.3" package="@galaxyproject/tabulator"/>
+        <requirement type="npm" version="0.0.6" package="@galaxyproject/tabulator"/>
     </requirements>
     <entry_point entry_point_type="script" src="dist/index.js" css="dist/index.css" />
     <tests>
diff --git a/lib/galaxy/authnz/psa_authnz.py b/lib/galaxy/authnz/psa_authnz.py
index fb1891cffdb..2179144f16d 100644
--- a/lib/galaxy/authnz/psa_authnz.py
+++ b/lib/galaxy/authnz/psa_authnz.py
@@ -198,7 +198,11 @@ class PSAAuthnz(IdentityProvider):
         else:
             log.debug("No `expires` or `expires_in` key found in token extra data, cannot refresh")
             return False
-        if int(user_authnz_token.extra_data["auth_time"]) + int(expires) / 2 <= int(time.time()):
+        if (
+            int(user_authnz_token.extra_data["auth_time"]) + int(expires) / 2
+            <= int(time.time())
+            < int(user_authnz_token.extra_data["auth_time"]) + int(expires)
+        ):
             on_the_fly_config(trans.sa_session)
             if self.config["provider"] == "azure":
                 self.refresh_azure(user_authnz_token)
diff --git a/lib/galaxy/datatypes/genetics.py b/lib/galaxy/datatypes/genetics.py
index 4921a9d96b5..40b5ef472ab 100644
--- a/lib/galaxy/datatypes/genetics.py
+++ b/lib/galaxy/datatypes/genetics.py
@@ -49,6 +49,7 @@ from galaxy.util import (
     unicodify,
 )
 from galaxy.util.compression_utils import FileObjType
+from .util.generic_util import display_as_url
 
 log = logging.getLogger(__name__)
 verbose = False
@@ -121,13 +122,7 @@ class GenomeGraphs(Tabular):
                         action="display_at",
                         filename=f"ucsc_{site_name}",
                     )
-                    display_url = "{}{}/display_as?id={}&display_app={}&authz_method=display_at".format(
-                        base_url,
-                        app.url_for(controller="root"),
-                        dataset.id,
-                        type,
-                    )
-                    display_url = quote_plus(display_url)
+                    display_url = display_as_url(app, base_url, str(dataset.id), type)
                     # was display_url = quote_plus( "%s/display_as?id=%i&display_app=%s" % (base_url, dataset.id, type) )
                     # redirect_url = quote_plus( "%sdb=%s&position=%s:%s-%s&hgt.customText=%%s" % (site_url, dataset.dbkey, chrom, start, stop) )
                     sl = [
diff --git a/lib/galaxy/datatypes/interval.py b/lib/galaxy/datatypes/interval.py
index e3b3cf10205..6ae4440c964 100644
--- a/lib/galaxy/datatypes/interval.py
+++ b/lib/galaxy/datatypes/interval.py
@@ -52,6 +52,7 @@ from . import (
     data,
     dataproviders,
 )
+from .util.generic_util import display_as_url
 
 log = logging.getLogger(__name__)
 
@@ -340,14 +341,7 @@ class Interval(Tabular):
                 action="display_at",
                 filename="ucsc_" + site_name,
             )
-            display_url = quote_plus(
-                "{}{}/display_as?id={}&display_app={}&authz_method=display_at".format(
-                    base_url,
-                    app.url_for(controller="root"),
-                    dataset.id,
-                    type,
-                )
-            )
+            display_url = display_as_url(app, base_url, str(dataset.id), type)
             redirect_url = quote_plus(f"{site_url}db={dataset.dbkey}&position={chrom}:{start}-{stop}&hgt.customText=%s")
             link = f"{internal_url}?redirect_url={redirect_url}&display_url={display_url}"
             ret_val.append((site_name, link))
@@ -777,14 +771,7 @@ class _RemoteCallMixin:
         """
         internal_url = f"{app.url_for(controller='dataset', dataset_id=dataset.id, action='display_at', filename=f'{type}_{site_name}')}"
         base_url = app.config.get("display_at_callback", base_url)
-        display_url = quote_plus(
-            "{}{}/display_as?id={}&display_app={}&authz_method=display_at".format(
-                base_url,
-                app.url_for(controller="root"),
-                dataset.id,
-                type,
-            )
-        )
+        display_url = display_as_url(app, base_url, str(dataset.id), type)
         link = f"{internal_url}?redirect_url={redirect_url}&display_url={display_url}"
         return link
 
@@ -1559,14 +1546,7 @@ class CustomTrack(Tabular):
             for site_name, site_url in app.datatypes_registry.get_legacy_sites_by_build("ucsc", dataset.dbkey):
                 if site_name in app.datatypes_registry.get_display_sites("ucsc"):
                     internal_url = f"{app.url_for(controller='dataset', dataset_id=dataset.id, action='display_at', filename='ucsc_' + site_name)}"
-                    display_url = quote_plus(
-                        "{}{}/display_as?id={}&display_app={}&authz_method=display_at".format(
-                            base_url,
-                            app.url_for(controller="root"),
-                            dataset.id,
-                            type,
-                        )
-                    )
+                    display_url = display_as_url(app, base_url, str(dataset.id), type)
                     redirect_url = quote_plus(
                         f"{site_url}db={dataset.dbkey}&position={chrom}:{start}-{stop}&hgt.customText=%s"
                     )
diff --git a/lib/galaxy/datatypes/util/generic_util.py b/lib/galaxy/datatypes/util/generic_util.py
index 105f1a4792c..5aa68050513 100644
--- a/lib/galaxy/datatypes/util/generic_util.py
+++ b/lib/galaxy/datatypes/util/generic_util.py
@@ -1,3 +1,9 @@
+from urllib.parse import (
+    quote_plus,
+    urlencode,
+    urljoin,
+)
+
 from galaxy.util import commands
 
 
@@ -16,3 +22,17 @@ def count_special_lines(word, filename, invert=False):
     except commands.CommandLineException:
         return 0
     return int(out)
+
+
+def display_as_url(app, base_url: str, dataset_id: str, display_app: str) -> str:
+    """Generate a link to the ``display_as`` action the the ``root`` controller, encoded for use as a query param."""
+    display_base_url = urljoin(base_url, app.url_for(controller="root", action="display_as"))
+    display_query = urlencode(
+        {
+            "id": dataset_id,
+            "display_app": display_app,
+            "authz_method": "display_at",
+        }
+    )
+    display_url = quote_plus(f"{display_base_url}?{display_query}")
+    return display_url
diff --git a/lib/galaxy/dependencies/pinned-requirements.txt b/lib/galaxy/dependencies/pinned-requirements.txt
index fd835062b05..25b72e9908a 100644
--- a/lib/galaxy/dependencies/pinned-requirements.txt
+++ b/lib/galaxy/dependencies/pinned-requirements.txt
@@ -75,6 +75,8 @@ greenlet==3.2.1 ; (python_full_version < '3.14' and platform_machine == 'AMD64')
 gunicorn==23.0.0
 gxformat2==0.20.0
 h11==0.16.0
+httpcore==1.0.9
+httpx==0.28.1
 h5grove==2.3.0
 h5py==3.13.0
 humanfriendly==10.0
diff --git a/lib/galaxy/tool_util/xsd/galaxy.xsd b/lib/galaxy/tool_util/xsd/galaxy.xsd
index ff5f3bd6ffb..b923fd3fbfa 100644
--- a/lib/galaxy/tool_util/xsd/galaxy.xsd
+++ b/lib/galaxy/tool_util/xsd/galaxy.xsd
@@ -203,11 +203,11 @@ for the list of behavior changes associated with profile versions.
       <xs:attribute name="license" type="xs:string">
         <xs:annotation>
           <xs:documentation xml:lang="en">This string specifies any full URI or a
-a short [SPDX](https://spdx.org/licenses/) identifier for a license for this tool
-wrapper. The tool wrapper version can be indepedent of the underlying tool. This
-license covers the tool XML and associated scripts shipped with the tool.
+            a short [SPDX](https://spdx.org/licenses/) identifier for a license for this tool
+            wrapper. The tool wrapper version can be independent of the underlying tool. This
+            license covers the tool XML and associated scripts shipped with the tool.
 
-This is interpreted as [schema.org/license](https://schema.org/license) property.
+            This is interpreted as [schema.org/license](https://schema.org/license) property.
 </xs:documentation>
         </xs:annotation>
       </xs:attribute>
diff --git a/lib/galaxy/tool_util_models/__init__.py b/lib/galaxy/tool_util_models/__init__.py
index 4e419fddbfd..1055e1ca554 100644
--- a/lib/galaxy/tool_util_models/__init__.py
+++ b/lib/galaxy/tool_util_models/__init__.py
@@ -82,12 +82,37 @@ class ToolSourceBase(BaseModel):
 # repeated fields to get consistent order, ugh, FIXME obviously
 class UserToolSource(BaseModel):
     class_: Annotated[Literal["GalaxyUserTool"], Field(alias="class")]
-    id: Optional[str]
-    version: Optional[str]
-    name: str
-    description: Optional[str] = None
-    container: str
-    requirements: Optional[List[Union[JavascriptRequirement, ResourceRequirement, ContainerRequirement]]] = []
+    id: Annotated[
+        str,
+        Field(
+            description="Unique identifier for the tool. Should be all lower-case and should not include whitespace.",
+            examples=["my-cool-tool"],
+            min_length=3,
+            max_length=255,
+        ),
+    ]
+    version: Annotated[str, Field(description="Version for the tool.", examples=["0.1.0"])]
+    name: Annotated[
+        str,
+        Field(
+            description="The name of the tool, displayed in the tool menu. This is not the same as the tool id, which is a unique identifier for the tool."
+        ),
+    ]
+    description: Annotated[
+        Optional[str],
+        Field(
+            description="The description is displayed in the tool menu immediately following the hyperlink for the tool."
+        ),
+    ] = None
+    container: Annotated[
+        str, Field(description="Container image to use for this tool.", examples=["quay.io/biocontainers/python:3.13"])
+    ]
+    requirements: Annotated[
+        Optional[List[Union[JavascriptRequirement, ResourceRequirement, ContainerRequirement]]],
+        Field(
+            description="A list of requirements needed to execute this tool. These can be javascript expressions, resource requirements or container images."
+        ),
+    ] = []
     shell_command: Annotated[
         str,
         Field(
@@ -99,11 +124,17 @@ class UserToolSource(BaseModel):
     inputs: List[GalaxyToolParameterModel] = []
     outputs: List[IncomingToolOutput] = []
     citations: Optional[List[Citation]] = None
-    license: Optional[str] = None
+    license: Annotated[
+        Optional[str],
+        Field(
+            description="A full URI or a a short [SPDX](https://spdx.org/licenses/) identifier for a license for this tool wrapper. The tool wrapper license can be independent of the underlying tool license. This license covers the tool yaml and associated scripts shipped with the tool.",
+            examples=["MIT"],
+        ),
+    ] = None
     edam_operations: Optional[List[str]] = None
     edam_topics: Optional[List[str]] = None
     xrefs: Optional[List[XrefDict]] = None
-    help: Optional[HelpContent] = None
+    help: Annotated[Optional[HelpContent], Field(description="Help text shown below the tool interface.")] = None
 
     @model_validator(mode="before")
     @classmethod
diff --git a/lib/galaxy/tool_util_models/parameters.py b/lib/galaxy/tool_util_models/parameters.py
index 9dc6fa7b6f1..bce03a9ead4 100644
--- a/lib/galaxy/tool_util_models/parameters.py
+++ b/lib/galaxy/tool_util_models/parameters.py
@@ -176,7 +176,10 @@ def dynamic_model_information_from_py_type(
 # where value in the incoming model means "default value" and value in the outgoing model is the actual
 # value a user has set. (incoming/outgoing from the client perspective).
 class BaseToolParameterModelDefinition(BaseModel):
-    name: str
+    name: Annotated[
+        str,
+        Field(description="Parameter name. Used when referencing parameter in workflows or inside command templating."),
+    ]
     parameter_type: str
 
     @abstractmethod
@@ -186,11 +189,27 @@ class BaseToolParameterModelDefinition(BaseModel):
 
 class BaseGalaxyToolParameterModelDefinition(BaseToolParameterModelDefinition):
     hidden: bool = False
-    label: Optional[str] = None
-    help: Optional[str] = None
-    argument: Optional[str] = None
+    label: Optional[
+        Annotated[str, Field(description="Will be displayed on the tool page as the label of the parameter.")]
+    ] = None
+    help: Optional[
+        Annotated[
+            str,
+            Field(
+                description="Short bit of text, rendered on the tool form just below the associated field to provide information about the field."
+            ),
+        ]
+    ] = None
+    argument: Optional[
+        Annotated[
+            str,
+            Field(
+                description="""If the parameter reflects just one command line argument of a certain tool, this tag should be set to that particular argument. It is rendered in parenthesis after the help section, and it will create the name attribute (if not given explicitly) from the argument attribute by stripping leading dashes and replacing all remaining dashes by underscores (e.g. if argument="--long-parameter" then name="long_parameter" is implicit)."""
+            ),
+        ]
+    ] = None
     is_dynamic: bool = False
-    optional: bool = False
+    optional: Annotated[bool, Field(description="If `false`, parameter must have a value.")] = False
 
 
 class LabelValue(BaseModel):
@@ -511,12 +530,19 @@ class DataRequestInternalHdca(StrictModel):
 
 class DataInternalJson(StrictModel):
     class_: Annotated[Literal["File"], Field(alias="class")]
-    basename: str
+    basename: Annotated[
+        str,
+        Field(
+            description="The base name of the file, that is, the name of the file without any leading directory path"
+        ),
+    ]
     location: str
-    path: str
+    path: Annotated[str, Field(description="The absolute path to the file on disk.")]
     listing: Optional[List[str]]  # Should be recursive
-    nameroot: Optional[str]
-    nameext: Optional[str]
+    nameroot: Annotated[Optional[str], Field(description="The basename root such that nameroot + nameext == basename")]
+    nameext: Annotated[
+        Optional[str], Field(description="The basename extension such that nameroot + nameext == basename")
+    ]
     # "secondaryFiles": List[Any],
     checksum: Optional[str]
     size: int
@@ -576,8 +602,14 @@ MultiDataRequestInternalDereferenced: Type = union_type(
 class DataParameterModel(BaseGalaxyToolParameterModelDefinition):
     parameter_type: Literal["gx_data"] = "gx_data"
     type: Literal["data"]
-    extensions: List[str] = ["data"]
-    multiple: bool = False
+    extensions: Annotated[
+        List[str],
+        Field(
+            description="Limit inputs to datasets with these extensions. Use 'data' to allow all input datasets.",
+            examples=["txt", "tabular", "tiff"],
+        ),
+    ] = ["data"]
+    multiple: Annotated[bool, Field(description="Allow multiple values to be selected.")] = False
     min: Optional[int] = None
     max: Optional[int] = None
 
diff --git a/lib/galaxy/tool_util_models/tool_outputs.py b/lib/galaxy/tool_util_models/tool_outputs.py
index 69580849206..62253ba32e9 100644
--- a/lib/galaxy/tool_util_models/tool_outputs.py
+++ b/lib/galaxy/tool_util_models/tool_outputs.py
@@ -35,7 +35,9 @@ class GenericToolOutputBaseModel(BaseModel, Generic[IncomingNotRequiredBoolT, In
         IncomingNotRequiredStringT, Field(description="Parameter name. Used when referencing parameter in workflows.")
     ]
     label: Optional[Annotated[str, Field(description="Output label. Will be used as dataset name in history.")]] = None
-    hidden: IncomingNotRequiredBoolT
+    hidden: Annotated[
+        IncomingNotRequiredBoolT, Field(description="If true, the output will not be shown in the history.")
+    ]
 
 
 DiscoverViaT = Literal["tool_provided_metadata", "pattern"]
@@ -73,8 +75,22 @@ class GenericToolOutputDataset(
 ):
     type: Literal["data"]
     format: Annotated[IncomingNotRequiredStringT, Field(description="The short name for the output datatype.")]
-    format_source: Optional[str] = None
-    metadata_source: Optional[str] = None
+    format_source: Optional[
+        Annotated[
+            str,
+            Field(
+                description="This sets the data type of the output dataset(s) to be the same format as that of the specified tool input."
+            ),
+        ]
+    ] = None
+    metadata_source: Optional[
+        Annotated[
+            str,
+            Field(
+                description="This copies the metadata information from the tool’s input dataset to serve as default for information that cannot be detected from the output. One prominent use case is interval data with a non-standard column order that cannot be deduced from a header line, but which is known to be identical in the input and output datasets."
+            ),
+        ]
+    ] = None
     discover_datasets: Optional[List[DatasetCollectionDescriptionT]] = None
     from_work_dir: Optional[
         Annotated[
diff --git a/lib/tool_shed/webapp/frontend/src/schema/schema.ts b/lib/tool_shed/webapp/frontend/src/schema/schema.ts
index ac13cb34147..5ef51ac4d36 100644
--- a/lib/tool_shed/webapp/frontend/src/schema/schema.ts
+++ b/lib/tool_shed/webapp/frontend/src/schema/schema.ts
@@ -799,10 +799,14 @@ export interface components {
             is_dynamic: boolean
             /** Label */
             label?: string | null
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean
@@ -845,10 +849,14 @@ export interface components {
             is_dynamic: boolean
             /** Label */
             label?: string | null
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean
@@ -932,10 +940,14 @@ export interface components {
             is_dynamic: boolean
             /** Label */
             label?: string | null
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean
@@ -971,10 +983,14 @@ export interface components {
             is_dynamic: boolean
             /** Label */
             label?: string | null
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean
@@ -1072,7 +1088,10 @@ export interface components {
         }
         /** CwlBooleanParameterModel */
         CwlBooleanParameterModel: {
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string
             /**
              * Parameter Type
@@ -1099,10 +1118,14 @@ export interface components {
             is_dynamic: boolean
             /** Label */
             label?: string | null
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean
@@ -1131,10 +1154,14 @@ export interface components {
             is_dynamic: boolean
             /** Label */
             label?: string | null
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean
@@ -1147,7 +1174,10 @@ export interface components {
         }
         /** CwlFloatParameterModel */
         CwlFloatParameterModel: {
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string
             /**
              * Parameter Type
@@ -1158,7 +1188,10 @@ export interface components {
         }
         /** CwlIntegerParameterModel */
         CwlIntegerParameterModel: {
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string
             /**
              * Parameter Type
@@ -1169,7 +1202,10 @@ export interface components {
         }
         /** CwlNullParameterModel */
         CwlNullParameterModel: {
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string
             /**
              * Parameter Type
@@ -1180,7 +1216,10 @@ export interface components {
         }
         /** CwlStringParameterModel */
         CwlStringParameterModel: {
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string
             /**
              * Parameter Type
@@ -1191,7 +1230,10 @@ export interface components {
         }
         /** CwlUnionParameterModel */
         CwlUnionParameterModel: {
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string
             /**
              * Parameter Type
@@ -1238,10 +1280,14 @@ export interface components {
             is_dynamic: boolean
             /** Label */
             label?: string | null
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean
@@ -1281,10 +1327,14 @@ export interface components {
             label?: string | null
             /** Multiple */
             multiple: boolean
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean
@@ -1308,6 +1358,7 @@ export interface components {
             argument?: string | null
             /**
              * Extensions
+             * @description Limit inputs to datasets with these extensions. Use 'data' to allow all input datasets.
              * @default [
              *       "data"
              *     ]
@@ -1333,13 +1384,18 @@ export interface components {
             min?: number | null
             /**
              * Multiple
+             * @description Allow multiple values to be selected.
              * @default false
              */
             multiple: boolean
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean
@@ -1416,10 +1472,14 @@ export interface components {
             is_dynamic: boolean
             /** Label */
             label?: string | null
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean
@@ -1481,10 +1541,14 @@ export interface components {
             label?: string | null
             /** Multiple */
             multiple: boolean
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean
@@ -1610,10 +1674,14 @@ export interface components {
             max?: number | null
             /** Min */
             min?: number | null
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean
@@ -1656,10 +1724,14 @@ export interface components {
             label?: string | null
             /** Multiple */
             multiple: boolean
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean
@@ -1695,10 +1767,14 @@ export interface components {
             label?: string | null
             /** Multiple */
             multiple: boolean
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean
@@ -1742,10 +1818,14 @@ export interface components {
             is_dynamic: boolean
             /** Label */
             label?: string | null
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean
@@ -1869,7 +1949,10 @@ export interface components {
             max?: number | null
             /** Min */
             min?: number | null
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string
             /** Optional */
             optional: boolean
@@ -2033,10 +2116,14 @@ export interface components {
             max?: number | null
             /** Min */
             min?: number | null
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean
@@ -2366,10 +2453,14 @@ export interface components {
             is_dynamic: boolean
             /** Label */
             label?: string | null
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean
@@ -2403,10 +2494,14 @@ export interface components {
             is_dynamic: boolean
             /** Label */
             label?: string | null
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean
@@ -2475,10 +2570,14 @@ export interface components {
              * @default false
              */
             multiple: boolean
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean
@@ -2662,10 +2761,14 @@ export interface components {
             is_dynamic: boolean
             /** Label */
             label?: string | null
-            /** Name */
+            /**
+             * Name
+             * @description Parameter name. Used when referencing parameter in workflows or inside command templating.
+             */
             name: string
             /**
              * Optional
+             * @description If `false`, parameter must have a value.
              * @default false
              */
             optional: boolean
@@ -2770,7 +2873,10 @@ export interface components {
         }
         /** ToolOutputBoolean */
         ToolOutputBoolean: {
-            /** Hidden */
+            /**
+             * Hidden
+             * @description If true, the output will not be shown in the history.
+             */
             hidden: unknown
             /** Label */
             label?: string | null
@@ -2787,7 +2893,10 @@ export interface components {
         }
         /** ToolOutputCollection */
         ToolOutputCollection: {
-            /** Hidden */
+            /**
+             * Hidden
+             * @description If true, the output will not be shown in the history.
+             */
             hidden: boolean
             /** Label */
             label?: string | null
@@ -2839,7 +2948,10 @@ export interface components {
             format_source?: string | null
             /** From Work Dir */
             from_work_dir?: string | null
-            /** Hidden */
+            /**
+             * Hidden
+             * @description If true, the output will not be shown in the history.
+             */
             hidden: boolean
             /** Label */
             label?: string | null
@@ -2858,7 +2970,10 @@ export interface components {
         }
         /** ToolOutputFloat */
         ToolOutputFloat: {
-            /** Hidden */
+            /**
+             * Hidden
+             * @description If true, the output will not be shown in the history.
+             */
             hidden: unknown
             /** Label */
             label?: string | null
@@ -2875,7 +2990,10 @@ export interface components {
         }
         /** ToolOutputInteger */
         ToolOutputInteger: {
-            /** Hidden */
+            /**
+             * Hidden
+             * @description If true, the output will not be shown in the history.
+             */
             hidden: unknown
             /** Label */
             label?: string | null
@@ -2892,7 +3010,10 @@ export interface components {
         }
         /** ToolOutputText */
         ToolOutputText: {
-            /** Hidden */
+            /**
+             * Hidden
+             * @description If true, the output will not be shown in the history.
+             */
             hidden: unknown
             /** Label */
             label?: string | null
diff --git a/packages/web_apps/setup.cfg b/packages/web_apps/setup.cfg
index c815f3f1b57..27b410695f7 100644
--- a/packages/web_apps/setup.cfg
+++ b/packages/web_apps/setup.cfg
@@ -45,6 +45,7 @@ install_requires =
     CT3>=3.3.3
     fastapi>=0.101.0
     gunicorn
+    httpx
     gxformat2
     Mako
     MarkupSafe
diff --git a/pyproject.toml b/pyproject.toml
index a81dcff43bc..30942d962bc 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -46,6 +46,7 @@ dependencies = [
     "gxformat2",
     "h5grove>=1.2.1",
     "h5py>=3.12",  # Python 3.13 support
+    "httpx",
     "importlib-resources ; python_version<'3.12'",  # for importlib.{abc.Traversable,resources.{files, Package}}
     "isa-rwval @ git+https://github.com/nsoranzo/isa-rwval.git@master",  # https://github.com/ISA-tools/isa-rwval/pull/17
     "isal>=1.7.0",  # Python 3.13 support
@@ -125,7 +126,6 @@ dev = [
     "darker",
     "fluent-logger",
     "galaxy-release-util",
-    "httpx",
     "isort",
     "lxml!=4.2.2",
     "markdown-it-reporter",