From d73d47a86c5eb7289520f69945cd2a5ec5a4f212 Mon Sep 17 00:00:00 2001 From: Nate Coraor Date: Mon, 18 May 2026 11:32:51 -0400 Subject: [PATCH] Fix bwa loc filename in integration test (bwa_mem_index, not bwa_index) The bwa@051eba708f43 repo only registers the bwa_mem_indexes table (bwa_mem_index.loc); the bwa_indexes table comes from a different repo. Use the actual filename the repo installs so the assertion can find the expected shed-managed loc file. --- test/integration/test_repository_operations.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/test/integration/test_repository_operations.py b/test/integration/test_repository_operations.py index 46880eae6fd..fadf5cdd92c 100644 --- a/test/integration/test_repository_operations.py +++ b/test/integration/test_repository_operations.py @@ -68,7 +68,7 @@ class TestRepositoryInstallIntegrationTestCase(integration_util.IntegrationTestC shipped via tool_data_table_conf.xml.sample). Any entries written to shed_tool_data_table_conf.xml have no sub-element.""" non_dm_repo = ("devteam", "bwa", "051eba708f43") - non_dm_loc_files = {"bwa_index.loc"} + non_dm_loc_files = {"bwa_mem_index.loc"} self.install_repository(*non_dm_repo) shed_loc_dir = os.path.join(self._app.config.tool_data_path, "shed") for loc_file in non_dm_loc_files: