From 1b570d3b459435c7b97e19a356b5f0b78eef09c5 Mon Sep 17 00:00:00 2001 From: galaxybot Date: Sat, 26 Nov 2022 03:21:45 +0000 Subject: [PATCH] Update Python dependencies --- lib/galaxy/dependencies/dev-requirements.txt | 28 +++++++++---------- .../dependencies/pinned-lint-requirements.txt | 14 +++++----- .../dependencies/pinned-requirements.txt | 26 ++++++++--------- 3 files changed, 34 insertions(+), 34 deletions(-) diff --git a/lib/galaxy/dependencies/dev-requirements.txt b/lib/galaxy/dependencies/dev-requirements.txt index ac40701635c..12d7ab2b23e 100644 --- a/lib/galaxy/dependencies/dev-requirements.txt +++ b/lib/galaxy/dependencies/dev-requirements.txt @@ -30,14 +30,14 @@ darker==1.5.1 ; python_version >= "3.7" and python_version < "3.11" defusedxml==0.7.1 ; python_version >= "3.7" and python_version < "3.11" deprecated==1.2.13 ; python_version >= "3.7" and python_version < "3.11" docutils==0.16 ; python_version >= "3.7" and python_version < "3.11" -exceptiongroup==1.0.1 ; python_version >= "3.7" and python_version < "3.11" +exceptiongroup==1.0.4 ; python_version >= "3.7" and python_version < "3.11" fluent-logger==0.10.0 ; python_version >= "3.7" and python_version < "3.11" fonttools==4.38.0 ; python_version >= "3.7" and python_version < "3.11" frozenlist==1.3.3 ; python_version >= "3.7" and python_version < "3.11" future==0.18.2 ; python_version >= "3.7" and python_version < "3.11" -h11==0.12.0 ; python_version >= "3.7" and python_version < "3.11" -httpcore==0.15.0 ; python_version >= "3.7" and python_version < "3.11" -httpx==0.23.0 ; python_version >= "3.7" and python_version < "3.11" +h11==0.14.0 ; python_version >= "3.7" and python_version < "3.11" +httpcore==0.16.2 ; python_version >= "3.7" and python_version < "3.11" +httpx==0.23.1 ; python_version >= "3.7" and python_version < "3.11" idna==3.4 ; python_version >= "3.7" and python_version < "3.11" imagesize==1.4.1 ; python_version >= "3.7" and python_version < "3.11" importlib-metadata==4.13.0 ; python_version >= "3.7" and python_version < "3.10" @@ -62,13 +62,13 @@ mypy-extensions==0.4.3 ; python_version >= "3.7" and python_version < "3.11" numpy==1.21.6 ; python_version >= "3.7" and python_version < "3.11" outcome==1.2.0 ; python_version >= "3.7" and python_version < "3.11" packaging==21.3 ; python_version >= "3.7" and python_version < "3.11" -pathspec==0.10.1 ; python_version >= "3.7" and python_version < "3.11" +pathspec==0.10.2 ; python_version >= "3.7" and python_version < "3.11" pillow==9.3.0 ; python_version >= "3.7" and python_version < "3.11" -platformdirs==2.5.3 ; python_version >= "3.7" and python_version < "3.11" +platformdirs==2.5.4 ; python_version >= "3.7" and python_version < "3.11" pluggy==1.0.0 ; python_version >= "3.7" and python_version < "3.11" port-for==0.6.2 ; python_version >= "3.7" and python_version < "3.11" prettytable==3.5.0 ; python_version >= "3.7" and python_version < "3.11" -prompt-toolkit==3.0.32 ; python_version >= "3.7" and python_version < "3.11" +prompt-toolkit==3.0.33 ; python_version >= "3.7" and python_version < "3.11" psutil==5.9.4 ; python_version >= "3.7" and python_version < "3.11" and sys_platform != "cygwin" py==1.11.0 ; python_version >= "3.7" and python_version < "3.11" pycparser==2.21 ; python_version >= "3.7" and python_version < "3.11" @@ -98,11 +98,11 @@ responses==0.22.0 ; python_version >= "3.7" and python_version < "3.11" rfc3986[idna2008]==1.5.0 ; python_version >= "3.7" and python_version < "3.11" ruamel-yaml-clib==0.2.7 ; platform_python_implementation == "CPython" and python_version < "3.11" and python_version >= "3.7" ruamel-yaml==0.17.21 ; python_version >= "3.7" and python_version < "3.11" -schema-salad==8.3.20221028160159 ; python_version >= "3.7" and python_version < "3.11" +schema-salad==8.3.20221115203138 ; python_version >= "3.7" and python_version < "3.11" scipy==1.7.3 ; python_version >= "3.7" and python_version < "3.11" -selenium==4.6.0 ; python_version >= "3.7" and python_version < "3.11" +selenium==4.6.1 ; python_version >= "3.7" and python_version < "3.11" setuptools-scm==5.0.2 ; python_version >= "3.7" and python_version < "3.11" -setuptools==65.5.1 ; python_version >= "3.7" and python_version < "3.11" +setuptools==65.6.3 ; python_version >= "3.7" and python_version < "3.11" six==1.16.0 ; python_version >= "3.7" and python_version < "3.11" sniffio==1.3.0 ; python_version >= "3.7" and python_version < "3.11" snowballstemmer==2.2.0 ; python_version >= "3.7" and python_version < "3.11" @@ -126,14 +126,14 @@ trio==0.22.0 ; python_version >= "3.7" and python_version < "3.11" tuspy==1.0.0 ; python_version >= "3.7" and python_version < "3.11" twill==3.1 ; python_version >= "3.7" and python_version < "3.11" typed-ast==1.5.4 ; python_version < "3.8" and implementation_name == "cpython" and python_version >= "3.7" -types-toml==0.10.8 ; python_version >= "3.7" and python_version < "3.11" +types-toml==0.10.8.1 ; python_version >= "3.7" and python_version < "3.11" typing-extensions==4.4.0 ; python_version >= "3.7" and python_version < "3.10" -urllib3==1.26.12 ; python_version >= "3.7" and python_version < "3.11" -urllib3[socks]==1.26.12 ; python_version >= "3.7" and python_version < "3.11" +urllib3==1.26.13 ; python_version >= "3.7" and python_version < "3.11" +urllib3[socks]==1.26.13 ; python_version >= "3.7" and python_version < "3.11" vine==5.0.0 ; python_version >= "3.7" and python_version < "3.11" watchdog==2.1.9 ; python_version >= "3.7" and python_version < "3.11" wcwidth==0.2.5 ; python_version >= "3.7" and python_version < "3.11" wrapt==1.14.1 ; python_version >= "3.7" and python_version < "3.11" wsproto==1.2.0 ; python_version >= "3.7" and python_version < "3.11" yarl==1.8.1 ; python_version >= "3.7" and python_version < "3.11" -zipp==3.10.0 ; python_version >= "3.7" and python_version < "3.10" +zipp==3.11.0 ; python_version >= "3.7" and python_version < "3.10" diff --git a/lib/galaxy/dependencies/pinned-lint-requirements.txt b/lib/galaxy/dependencies/pinned-lint-requirements.txt index cd944ab62dd..bc57d184442 100644 --- a/lib/galaxy/dependencies/pinned-lint-requirements.txt +++ b/lib/galaxy/dependencies/pinned-lint-requirements.txt @@ -10,18 +10,18 @@ pyflakes==2.5.0 tomli==2.0.1 typed-ast==1.5.4 types-bleach==5.0.3.1 -types-boto==2.49.18.2 +types-boto==2.49.18.3 types-contextvars==2.4.7 types-cryptography==3.3.23.2 types-dataclasses==0.6.6 types-docutils==0.19.1.1 types-Markdown==3.4.2.1 -types-paramiko==2.12.0.0 +types-paramiko==2.12.0.1 types-pkg-resources==0.1.3 -types-python-dateutil==2.8.19.3 +types-python-dateutil==2.8.19.4 types-PyYAML==6.0.12.2 -types-requests==2.28.11.4 -types-six==1.16.21.2 -types-urllib3==1.26.25.3 +types-requests==2.28.11.5 +types-six==1.16.21.4 +types-urllib3==1.26.25.4 typing_extensions==4.4.0 -zipp==3.10.0 +zipp==3.11.0 diff --git a/lib/galaxy/dependencies/pinned-requirements.txt b/lib/galaxy/dependencies/pinned-requirements.txt index 989c7ea6830..94f811ea642 100644 --- a/lib/galaxy/dependencies/pinned-requirements.txt +++ b/lib/galaxy/dependencies/pinned-requirements.txt @@ -36,7 +36,7 @@ certifi==2022.9.24 ; python_version >= "3.7" and python_version < "3.11" cffi==1.15.1 ; python_version >= "3.7" and python_version < "3.11" charset-normalizer==2.1.1 ; python_version >= "3.7" and python_version < "3.11" cheetah3==3.2.6.post1 ; python_version >= "3.7" and python_version < "3.11" -circus==0.17.2 ; python_version >= "3.7" and python_version < "3.11" +circus==0.18.0 ; python_version >= "3.7" and python_version < "3.11" click-didyoumean==0.3.0 ; python_version >= "3.7" and python_version < "3.11" click-plugins==1.1.1 ; python_version >= "3.7" and python_version < "3.11" click-repl==0.2.0 ; python_version >= "3.7" and python_version < "3.11" @@ -72,7 +72,7 @@ gravity==0.13.5 ; python_version >= "3.7" and python_version < "3.11" greenlet==2.0.1 ; python_version >= "3.7" and (platform_machine == "aarch64" or platform_machine == "ppc64le" or platform_machine == "x86_64" or platform_machine == "amd64" or platform_machine == "AMD64" or platform_machine == "win32" or platform_machine == "WIN32") and python_version < "3.11" gunicorn==20.1.0 ; python_version >= "3.7" and python_version < "3.11" gxformat2==0.16.0 ; python_version >= "3.7" and python_version < "3.11" -h11==0.12.0 ; python_version >= "3.7" and python_version < "3.11" +h11==0.14.0 ; python_version >= "3.7" and python_version < "3.11" h5py==3.7.0 ; python_version >= "3.7" and python_version < "3.11" humanfriendly==10.0 ; python_version >= "3.7" and python_version < "3.11" idna==3.4 ; python_version >= "3.7" and python_version < "3.11" @@ -82,15 +82,15 @@ isa-rwval==0.10.10 ; python_version >= "3.7" and python_version < "3.11" isodate==0.6.1 ; python_version >= "3.7" and python_version < "3.11" jinja2==3.1.2 ; python_version >= "3.7" and python_version < "3.11" jsonref==1.0.1 ; python_version >= "3.7" and python_version < "3.11" -jsonschema==4.17.0 ; python_version >= "3.7" and python_version < "3.11" +jsonschema==4.17.1 ; python_version >= "3.7" and python_version < "3.11" kombu==5.2.4 ; python_version >= "3.7" and python_version < "3.11" lagom==2.2.0 ; python_version >= "3.7" and python_version < "3.11" lockfile==0.12.2 ; python_version >= "3.7" and python_version < "3.11" lxml==4.9.1 ; python_version >= "3.7" and python_version < "3.11" -mako==1.2.3 ; python_version >= "3.7" and python_version < "3.11" +mako==1.2.4 ; python_version >= "3.7" and python_version < "3.11" markdown==3.4.1 ; python_version >= "3.7" and python_version < "3.11" markupsafe==2.1.1 ; python_version >= "3.7" and python_version < "3.11" -mercurial==6.2.3 ; python_version >= "3.7" and python_version < "3.11" +mercurial==6.3.1 ; python_version >= "3.7" and python_version < "3.11" mistune==0.8.4 ; python_version >= "3.7" and python_version < "3.11" mrcfile==1.4.3 ; python_version >= "3.7" and python_version < "3.11" msgpack==1.0.4 ; python_version >= "3.7" and python_version < "3.11" @@ -107,9 +107,9 @@ parsley==1.3 ; python_version >= "3.7" and python_version < "3.11" paste==3.5.2 ; python_version >= "3.7" and python_version < "3.11" pastedeploy==3.0.1 ; python_version >= "3.7" and python_version < "3.11" pbr==5.11.0 ; python_version >= "3.7" and python_version < "3.11" -pebble==5.0.2 ; python_version >= "3.7" and python_version < "3.11" +pebble==5.0.3 ; python_version >= "3.7" and python_version < "3.11" pkgutil-resolve-name==1.3.10 ; python_version >= "3.7" and python_version < "3.9" -prompt-toolkit==3.0.32 ; python_version >= "3.7" and python_version < "3.11" +prompt-toolkit==3.0.33 ; python_version >= "3.7" and python_version < "3.11" prov==1.5.1 ; python_version >= "3.7" and python_version < "3.11" psutil==5.9.4 ; python_version >= "3.7" and python_version < "3.11" pulsar-galaxy-lib==0.15.0.dev0 ; python_version >= "3.7" and python_version < "3.11" @@ -153,16 +153,16 @@ routes==2.5.1 ; python_version >= "3.7" and python_version < "3.11" rsa==4.9 ; python_version >= "3.7" and python_version < "3.11" ruamel-yaml-clib==0.2.7 ; platform_python_implementation == "CPython" and python_version < "3.11" and python_version >= "3.7" ruamel-yaml==0.17.21 ; python_version < "3.11" and python_version >= "3.7" -schema-salad==8.3.20221028160159 ; python_version >= "3.7" and python_version < "3.11" +schema-salad==8.3.20221115203138 ; python_version >= "3.7" and python_version < "3.11" setuptools-scm==5.0.2 ; python_version >= "3.7" and python_version < "3.11" -setuptools==65.5.1 ; python_version >= "3.7" and python_version < "3.11" +setuptools==65.6.3 ; python_version >= "3.7" and python_version < "3.11" shellescape==3.8.1 ; python_version >= "3.7" and python_version < "3.11" six==1.16.0 ; python_version >= "3.7" and python_version < "3.11" sniffio==1.3.0 ; python_version >= "3.7" and python_version < "3.11" social-auth-core[openidconnect]==4.0.3 ; python_version >= "3.7" and python_version < "3.11" sortedcontainers==2.4.0 ; python_version >= "3.7" and python_version < "3.11" sqlalchemy-migrate==0.13.0 ; python_version >= "3.7" and python_version < "3.11" -sqlalchemy==1.4.43 ; python_version >= "3.7" and python_version < "3.11" +sqlalchemy==1.4.44 ; python_version >= "3.7" and python_version < "3.11" sqlitedict==2.0.0 ; python_version >= "3.7" and python_version < "3.11" sqlparse==0.4.3 ; python_version >= "3.7" and python_version < "3.11" starlette-context==0.3.4 ; python_version >= "3.7" and python_version < "3.11" @@ -180,8 +180,8 @@ tuswsgi==0.5.4 ; python_version >= "3.7" and python_version < "3.11" typing-extensions==4.4.0 ; python_version >= "3.7" and python_version < "3.11" tzlocal==2.1 ; python_version >= "3.7" and python_version < "3.11" ubiquerg==0.6.2 ; python_version >= "3.7" and python_version < "3.11" -urllib3==1.26.12 ; python_version >= "3.7" and python_version < "3.11" -uvicorn==0.19.0 ; python_version >= "3.7" and python_version < "3.11" +urllib3==1.26.13 ; python_version >= "3.7" and python_version < "3.11" +uvicorn==0.20.0 ; python_version >= "3.7" and python_version < "3.11" uvloop==0.17.0 ; python_version >= "3.7" and python_version < "3.11" vine==5.0.0 ; python_version >= "3.7" and python_version < "3.11" wcwidth==0.2.5 ; python_version >= "3.7" and python_version < "3.11" @@ -190,5 +190,5 @@ webob==1.8.7 ; python_version >= "3.7" and python_version < "3.11" whoosh==2.7.4 ; python_version >= "3.7" and python_version < "3.11" yacman==0.8.4 ; python_version >= "3.7" and python_version < "3.11" yarl==1.8.1 ; python_version >= "3.7" and python_version < "3.11" -zipp==3.10.0 ; python_version >= "3.7" and python_version < "3.10" +zipp==3.11.0 ; python_version >= "3.7" and python_version < "3.10" zipstream-new==1.1.8 ; python_version >= "3.7" and python_version < "3.11"