From ca55ad845dfc484bf00a8f1bf82a3ed644738c33 Mon Sep 17 00:00:00 2001 From: mvdbeek Date: Thu, 17 Nov 2022 13:56:50 +0100 Subject: [PATCH] Mark skipped outputs as populated --- lib/galaxy/tools/actions/__init__.py | 2 ++ 1 file changed, 2 insertions(+) diff --git a/lib/galaxy/tools/actions/__init__.py b/lib/galaxy/tools/actions/__init__.py index 7da45dfea24..45eba238fd3 100644 --- a/lib/galaxy/tools/actions/__init__.py +++ b/lib/galaxy/tools/actions/__init__.py @@ -642,6 +642,8 @@ class DefaultToolAction(ToolAction): job, galaxy_session = self._new_job_for_session(trans, tool, history) if skip: job.state = job.states.SKIPPED + for output_collection in output_collections.out_collections.values(): + output_collection.mark_as_populated() object_store_populator = ObjectStorePopulator(trans.app, trans.user) for data in out_data.values(): object_store_populator.set_object_store_id(data)