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Fix for test/tool_shed/functional/test_1440_missing_env_sh_files.py .
Properly order the installation of the repositories adding prior_installation_required="True". Otherwise filter_1440 is installed first and ends in INSTALLED status because of the logic of Repository.create_tool_dependency_with_initialized_env_sh_file() method contained in lib/tool_shed/galaxy_install/tool_dependencies/recipe/tag_handler.py .
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@@ -1,6 +1,6 @@
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<?xml version='1.0' encoding='utf-8'?>
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<?xml version="1.0" encoding="utf-8"?>
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<tool_dependency>
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<package name="failure" version="1.0.0">
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<repository name="package_env_sh_1_0_1440" owner="user1" />
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<repository name="package_env_sh_1_0_1440" owner="user1" prior_installation_required="True" />
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</package>
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</tool_dependency>
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</tool_dependency>
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