diff --git a/config/datatypes_conf.xml.sample b/config/datatypes_conf.xml.sample index 561a2ab364d..2129d9d8979 100644 --- a/config/datatypes_conf.xml.sample +++ b/config/datatypes_conf.xml.sample @@ -500,6 +500,7 @@ + @@ -796,6 +797,7 @@ + diff --git a/lib/galaxy/datatypes/msa.py b/lib/galaxy/datatypes/msa.py index 6e36443bdf6..3146a3468d3 100644 --- a/lib/galaxy/datatypes/msa.py +++ b/lib/galaxy/datatypes/msa.py @@ -11,6 +11,53 @@ from galaxy.util import nice_size log = logging.getLogger(__name__) +class InfernalCM(Text): + file_ext = "cm" + + MetadataElement(name="number_of_models", default=0, desc="Number of covariance models", + readonly=True, visible=True, optional=True, no_value=0) + + MetadataElement(name="cm_version", default="1/a", desc="Infernal Covariance Model version", + readonly=True, visible=True, optional=True, no_value=0) + + def set_peek(self, dataset, is_multi_byte=False): + if not dataset.dataset.purged: + dataset.peek = get_file_peek(dataset.file_name, is_multi_byte=is_multi_byte) + if dataset.metadata.number_of_models == 1: + dataset.blurb = "1 model" + else: + dataset.blurb = "%s models" % dataset.metadata.number_of_models + dataset.peek = get_file_peek(dataset.file_name, is_multi_byte=is_multi_byte) + else: + dataset.peek = 'file does not exist' + dataset.blurb = 'file purged from disc' + + def sniff(self, filename): + """ + >>> from galaxy.datatypes.sniff import get_test_fname + >>> fname = get_test_fname( 'infernal_model.cm' ) + >>> InfernalCM().sniff( fname ) + True + >>> fname = get_test_fname( 'test.mz5' ) + >>> InfernalCM().sniff( fname ) + False + """ + with open(filename, 'r') as f: + first_line = f.readline() + + return first_line.startswith("INFERNAL") + + def set_meta(self, dataset, **kwd): + """ + Set the number of models and the version of CM file in dataset. + """ + dataset.metadata.number_of_models = generic_util.count_special_lines('^INFERNAL', dataset.file_name) + with open(dataset.file_name, 'r') as f: + first_line = f.readline() + if first_line.startswith("INFERNAL"): + dataset.metadata.cm_version = (first_line.split()[0]).replace('INFERNAL', '') + + class Hmmer(Text): edam_data = "data_1364" edam_format = "format_1370" diff --git a/lib/galaxy/datatypes/test/infernal_model.cm b/lib/galaxy/datatypes/test/infernal_model.cm new file mode 100644 index 00000000000..4af8a2a2b00 --- /dev/null +++ b/lib/galaxy/datatypes/test/infernal_model.cm @@ -0,0 +1,1312 @@ +INFERNAL1/a [1.1 | April 2012] +NAME tRNA +ACC RF00005 +DESC tRNA +STATES 227 +NODES 60 +CLEN 71 +W 218 +ALPH RNA +RF no +CONS yes +MAP yes +DATE Mon Apr 30 08:54:53 2012 +COM [1] /groups/eddy/home/nawrockie/notebook/12_0423_inf_final_stress_tests/wd-infernal/src/cmbuild -F tRNA.cm tRNA.sto +COM [2] /groups/eddy/home/nawrockie/notebook/12_0423_inf_final_stress_tests/wd-infernal/src/cmcalibrate --mpi tRNA.cm +PBEGIN 0.05 +PEND 0.05 +WBETA 1e-07 +QDBBETA1 1e-07 +QDBBETA2 1e-15 +N2OMEGA 1.52588e-05 +N3OMEGA 1.52588e-05 +ELSELF -0.08926734 +NSEQ 967 +EFFN 64.453232 +CKSUM 1685224748 +NULL 0.000 0.000 0.000 0.000 +GA 24.00 +TC 24.04 +EFP7GF -6.5772 0.73469 +ECMLC 0.79302 -4.21089 2.90112 1600000 337752 0.003553 +ECMGC 0.38490 -15.21245 -3.62397 1600000 34609 0.011558 +ECMLI 0.64537 -4.35897 4.09652 1600000 281252 0.004267 +ECMGI 0.41538 -11.77572 -1.10020 1600000 33721 0.011862 +CM + [ ROOT 0 ] - - - - - - + S 0 -1 0 1 4 0 1 218 410 -10.978 -12.223 -0.031 -5.613 + IL 1 1 2 1 4 11 38 219 411 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 + IR 2 2 3 2 3 12 39 220 411 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 1 ] - 119 - A - - + MR 3 2 3 5 5 16 42 219 410 -11.011 -0.003 -10.827 -11.039 -11.930 1.085 -1.826 -0.113 -0.575 + D 4 2 3 5 5 8 34 217 408 -3.401 -0.736 -4.225 -2.539 -3.651 + IR 5 5 3 5 5 11 37 218 410 -2.562 -0.438 -6.073 -4.241 -5.347 0.000 0.000 0.000 0.000 + [ MATP 2 ] 1 117 G C - - + MP 6 5 3 10 6 16 42 218 409 -12.060 -11.999 -0.003 -10.776 -11.056 -11.451 -5.257 -3.238 -3.838 1.469 -3.960 -4.395 0.510 -5.473 -6.181 3.049 -5.251 0.654 0.496 -5.677 -3.994 -3.530 + ML 7 5 3 10 6 9 34 215 407 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 8 5 3 10 6 10 35 215 407 -7.466 -6.195 -0.958 -6.173 -1.307 -4.386 0.234 -0.467 -0.604 0.529 + D 9 5 3 10 6 6 30 209 401 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 10 10 5 10 6 10 36 216 408 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 11 11 6 11 5 10 36 216 408 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 3 ] 2 116 g c - - + MP 12 11 6 16 6 16 41 216 407 -12.066 -12.006 -0.003 -10.782 -11.062 -11.457 -5.460 -4.628 -5.529 1.461 -3.223 -4.845 2.206 -4.664 -5.578 2.317 -6.079 -0.480 1.207 -5.364 -1.993 -4.350 + ML 13 11 6 16 6 9 34 213 405 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 14 11 6 16 6 9 34 213 404 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 15 11 6 16 6 6 30 208 399 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 16 16 5 16 6 10 35 215 406 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 17 17 6 17 5 10 35 214 406 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 4 ] 3 115 g c - - + MP 18 17 6 22 6 15 39 214 405 -12.066 -12.006 -0.003 -10.782 -11.062 -11.457 -2.991 -3.252 -3.304 1.529 -2.993 -4.063 1.911 -3.457 -3.750 1.994 -3.635 -0.550 1.687 -3.577 -1.152 -2.580 + ML 19 17 6 22 6 9 34 211 403 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 20 17 6 22 6 9 33 211 402 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 21 17 6 22 6 6 29 206 398 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 22 22 5 22 6 10 35 213 404 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 23 23 6 23 5 10 35 212 404 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 5 ] 4 114 g c - - + MP 24 23 6 28 6 14 37 212 403 -9.013 -12.006 -0.005 -10.782 -11.062 -11.457 -2.318 -3.248 -3.520 1.564 -2.588 -3.607 1.704 -3.816 -3.523 2.096 -4.340 -0.292 1.495 -3.841 -0.309 -2.742 + ML 25 23 6 28 6 9 33 209 401 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 26 23 6 28 6 8 33 209 401 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 27 23 6 28 6 5 29 205 397 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 28 28 5 28 6 10 34 211 402 -2.756 -3.018 -0.649 -4.674 -5.450 -5.110 0.000 0.000 0.000 0.000 + IR 29 29 6 29 5 10 34 210 402 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 6 ] 6 113 a u - - + MP 30 29 6 34 6 12 35 210 401 -12.066 -12.006 -0.003 -10.782 -11.062 -11.457 -2.802 -2.929 -3.236 2.045 -2.639 -3.980 1.703 -3.541 -3.409 1.608 -3.571 -0.269 1.483 -3.685 -0.323 -2.349 + ML 31 29 6 34 6 8 32 208 399 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 32 29 6 34 6 8 32 207 399 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 33 29 6 34 6 5 29 204 396 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 34 34 5 34 6 9 33 209 400 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 35 35 6 35 5 9 33 209 400 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 7 ] 7 112 u a - - + MP 36 35 6 40 6 10 33 208 399 -12.066 -12.006 -0.004 -9.123 -11.062 -11.457 -3.175 -3.172 -3.309 1.654 -2.791 -4.151 1.551 -3.938 -3.781 1.406 -4.354 -0.768 2.109 -3.857 0.237 -1.273 + ML 37 35 6 40 6 8 31 206 398 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 38 35 6 40 6 7 30 206 397 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 39 35 6 40 6 5 28 203 395 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 40 40 5 40 6 8 32 207 398 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 41 41 6 41 5 8 32 207 398 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 8 ] 8 111 g c - - + MP 42 41 6 46 4 8 31 206 397 -11.175 -8.859 -0.009 -8.063 -6.121 -4.131 -5.942 2.409 -7.033 -6.542 -0.625 -6.618 -5.229 2.583 -6.623 -0.535 1.615 -5.801 -4.123 -3.910 + ML 43 41 6 46 4 7 30 205 396 -3.888 -4.071 -0.455 -2.800 0.157 -0.368 -0.428 0.451 + MR 44 41 6 46 4 6 29 204 396 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 + D 45 41 6 46 4 5 28 203 394 -4.568 -4.250 -2.265 -0.520 + IL 46 46 5 46 4 7 31 205 397 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 + IR 47 47 6 47 3 7 30 205 397 -1.542 -0.728 -4.242 0.000 0.000 0.000 0.000 + [ MATL 9 ] 9 - U - - - + ML 48 47 6 50 3 6 29 204 395 -7.007 -0.023 -6.990 -2.076 -4.312 -3.010 1.843 + D 49 47 6 50 3 5 28 202 394 -6.681 -0.958 -1.072 + IL 50 50 3 50 3 6 29 204 396 -1.826 -0.568 -4.527 0.000 0.000 0.000 0.000 + [ MATL 10 ] 11 - A - - - + ML 51 50 3 53 2 5 28 203 394 -7.010 -0.011 1.376 -2.669 0.178 -3.109 + D 52 50 3 53 2 4 27 202 393 -8.544 -0.004 + IL 53 53 3 53 2 5 28 203 394 -2.436 -0.295 0.000 0.000 0.000 0.000 + [ BIF 11 ] - - - - - - + B 54 53 3 121 55 4 27 202 393 + [ BEGR 42 ] - - - - - - + S 55 54 1 56 3 0 1 168 360 -12.092 -0.001 -10.746 + IL 56 56 2 56 3 1 2 172 364 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 43 ] 56 - a - - - + ML 57 56 2 59 3 1 1 168 360 -12.092 -0.217 -2.840 0.929 -0.896 -1.145 0.146 + D 58 56 2 59 3 0 0 182 374 -6.174 -1.687 -0.566 + IL 59 59 3 59 3 1 2 165 357 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 44 ] 57 - g - - - + ML 60 59 3 62 3 1 1 147 339 -5.640 -0.035 -7.889 0.193 -2.464 0.978 -0.503 + D 61 59 3 62 3 0 0 186 378 -0.120 -4.288 -5.120 + IL 62 62 3 62 3 1 1 187 379 -0.139 -3.869 -5.430 0.000 0.000 0.000 0.000 + [ MATL 45 ] 82 - g - - - + ML 63 62 3 65 3 1 1 31 49 -1.124 -0.892 -8.860 0.551 -2.766 0.852 -0.781 + D 64 62 3 65 3 0 0 30 48 -4.985 -0.177 -3.578 + IL 65 65 3 65 3 1 1 31 49 -4.976 -0.051 -8.398 0.000 0.000 0.000 0.000 + [ MATL 46 ] 86 - c - - - + ML 66 65 3 68 5 1 1 30 48 -11.035 -0.003 -10.850 -11.063 -11.954 -1.666 0.881 -2.788 0.764 + D 67 65 3 68 5 0 0 28 46 -5.141 -0.681 -4.402 -2.777 -2.690 + IL 68 68 3 68 5 1 1 30 48 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 + [ MATP 47 ] 87 109 g c - - + MP 69 68 3 73 6 2 2 29 47 -12.066 -7.900 -0.008 -10.782 -11.062 -11.457 -4.338 -4.271 -5.753 2.128 -4.947 -6.390 1.123 -6.352 -6.113 2.587 -6.424 0.870 -0.003 -3.099 -2.196 -3.666 + ML 70 68 3 73 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 71 68 3 73 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 72 68 3 73 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 73 73 5 73 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 74 74 6 74 5 1 1 28 46 -2.650 -0.408 -6.162 -4.329 -5.435 0.000 0.000 0.000 0.000 + [ MATP 48 ] 88 107 c g - - + MP 75 74 6 79 6 2 2 27 45 -12.066 -12.006 -0.003 -10.782 -11.062 -11.457 -4.797 -4.148 -4.946 1.610 -4.313 -5.795 2.143 -5.044 -4.961 1.243 -5.516 -0.370 2.039 -4.022 -0.495 -2.107 + ML 76 74 6 79 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 77 74 6 79 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 78 74 6 79 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 79 79 5 79 6 1 1 27 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 80 80 6 80 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 49 ] 89 106 g c - - + MP 81 80 6 85 6 2 2 25 43 -6.997 -12.006 -0.026 -10.782 -11.062 -6.807 -5.441 -3.017 -5.435 2.200 -5.771 -6.144 1.104 -5.192 -5.345 2.488 -5.099 -0.755 1.132 -5.418 -1.315 -2.689 + ML 82 80 6 85 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 83 80 6 85 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 84 80 6 85 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 85 85 5 85 6 1 1 24 42 -3.239 -3.502 -0.433 -5.157 -5.933 -5.594 0.000 0.000 0.000 0.000 + IR 86 86 6 86 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 50 ] 91 105 G C - - + MP 87 86 6 91 6 2 2 23 41 -12.054 -11.993 -0.088 -9.124 -9.700 -4.168 -6.104 -2.525 -5.923 1.744 -4.412 -6.518 -0.885 -5.441 -4.365 3.360 -6.607 -1.450 -0.228 -5.777 -2.310 -4.135 + ML 88 86 6 91 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 89 86 6 91 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 90 86 6 91 6 0 0 21 40 -10.139 -8.837 -4.634 -5.316 -2.943 -0.319 + IL 91 91 5 91 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 92 92 6 92 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 51 ] 92 104 G C - - + MP 93 92 6 97 4 2 2 21 38 -11.071 -11.278 -0.039 -5.270 -6.025 -2.560 -5.843 0.080 -2.638 -4.094 -1.944 -4.527 -6.282 3.730 -5.566 -1.805 -1.436 -3.445 -3.431 -3.751 + ML 94 92 6 97 4 1 1 23 42 -3.886 -4.069 -0.456 -2.798 0.168 0.082 -0.504 0.153 + MR 95 92 6 97 4 1 1 23 41 -5.133 -4.162 -1.713 -0.712 0.189 -0.363 0.109 0.005 + D 96 92 6 97 4 0 0 20 38 -7.671 -7.352 -1.134 -0.907 + IL 97 97 5 97 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 + IR 98 98 6 98 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 52 ] 93 - U - - - + ML 99 98 6 101 3 1 1 18 36 -10.261 -0.002 -10.659 -1.981 -2.560 -3.724 1.808 + D 100 98 6 101 3 0 0 17 35 -9.568 -0.142 -3.440 + IL 101 101 3 101 3 1 1 22 41 -1.473 -0.775 -4.173 0.000 0.000 0.000 0.000 + [ MATL 53 ] 95 - U - - - + ML 102 101 3 104 3 1 1 17 34 -12.090 -0.006 -7.982 -2.089 -3.017 -2.077 1.767 + D 103 101 3 104 3 0 0 17 36 -6.545 -1.099 -0.937 + IL 104 104 3 104 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 54 ] 96 - C - - - + ML 105 104 3 107 3 1 1 16 33 -12.088 -0.003 -9.081 -0.857 1.537 -3.289 -1.172 + D 106 104 3 107 3 0 0 16 34 -6.801 -1.079 -0.950 + IL 107 107 3 107 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 55 ] 97 - g - - - + ML 108 107 3 110 3 1 1 15 32 -7.365 -0.019 -7.158 0.735 -2.516 0.939 -2.045 + D 109 107 3 110 3 0 0 14 32 -6.582 -1.057 -0.974 + IL 110 110 3 110 3 1 1 17 33 -1.748 -0.607 -4.448 0.000 0.000 0.000 0.000 + [ MATL 56 ] 99 - A - - - + ML 111 110 3 113 3 1 1 14 30 -12.083 -0.049 -4.915 1.834 -3.125 -3.688 -2.037 + D 112 110 3 113 3 0 0 14 32 -7.200 -2.713 -0.250 + IL 113 113 3 113 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 57 ] 100 - a - - - + ML 114 113 3 116 3 1 1 13 29 -6.117 -0.139 -3.691 0.744 -1.208 -0.297 0.110 + D 115 113 3 116 3 0 0 12 28 -5.138 -3.853 -0.148 + IL 116 116 3 116 3 1 1 16 32 -1.657 -0.618 -4.994 0.000 0.000 0.000 0.000 + [ MATL 58 ] 103 - U - - - + ML 117 116 3 119 2 1 1 1 1 * 0.000 -2.222 -0.662 -3.835 1.625 + D 118 116 3 119 2 0 0 0 0 * 0.000 + IL 119 119 3 119 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 + [ END 59 ] - - - - - - + E 120 119 3 -1 0 0 0 0 0 + [ BEGL 12 ] - - - - - - + S 121 54 1 122 1 0 8 47 65 0.000 + [ BIF 13 ] - - - - - - + B 122 121 1 123 170 0 8 47 65 + [ BEGL 14 ] - - - - - - + S 123 122 1 124 4 0 0 28 46 -0.004 -10.151 -9.558 -10.198 + [ MATP 15 ] 13 33 G C - - + MP 124 123 1 128 6 2 2 28 46 -12.066 -12.006 -0.003 -10.782 -11.062 -11.457 -6.116 -4.021 -3.677 0.522 -7.063 -6.530 -0.236 -4.846 -4.081 3.429 -4.645 0.923 -0.838 -5.789 -3.453 -3.772 + ML 125 123 1 128 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 126 123 1 128 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 127 123 1 128 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 128 128 5 128 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 129 129 6 129 5 1 1 28 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 16 ] 14 32 C G - - + MP 130 129 6 134 6 2 2 26 44 -12.066 -12.006 -0.004 -9.288 -11.062 -11.457 -6.391 -4.319 -5.973 -0.507 -5.273 -7.239 3.055 -5.923 -6.255 0.169 -6.770 -3.355 2.348 -3.545 -1.361 -4.289 + ML 131 129 6 134 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 132 129 6 134 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 133 129 6 134 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 134 134 5 134 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 135 135 6 135 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 17 ] 15 31 u a - - + MP 136 135 6 140 6 2 2 24 42 -12.065 -12.004 -0.003 -10.781 -11.060 -11.456 -3.197 -3.903 -5.383 0.955 -2.911 -6.231 1.594 -5.342 -4.046 1.426 -5.910 -2.702 2.857 -5.539 -1.190 -4.334 + ML 137 135 6 140 6 1 1 25 44 -6.396 -6.742 -1.118 -1.151 -6.592 -4.122 0.192 0.038 -0.475 0.153 + MR 138 135 6 140 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 139 135 6 140 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 140 140 5 140 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 141 141 6 141 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 18 ] 16 30 c g - - + MP 142 141 6 146 4 2 2 22 40 -11.177 -11.384 -0.006 -8.118 0.483 -2.749 -2.399 0.284 -2.394 -3.425 1.990 -3.686 0.688 -0.593 -3.321 -1.425 1.781 -3.063 0.793 -0.562 + ML 143 141 6 146 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 + MR 144 141 6 146 4 1 1 25 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 + D 145 141 6 146 4 0 0 24 42 -4.568 -4.250 -2.265 -0.520 + IL 146 146 5 146 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 + IR 147 147 6 147 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 19 ] 17 - A - - - + ML 148 147 6 150 3 1 1 19 37 -12.089 -0.014 -6.712 1.881 -4.558 -3.104 -2.662 + D 149 147 6 150 3 0 0 20 38 -6.658 -2.171 -0.381 + IL 150 150 3 150 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 20 ] 18 - g - - - + ML 151 150 3 153 3 1 1 18 36 -12.076 -0.239 -2.713 0.757 -2.921 0.829 -1.314 + D 152 150 3 153 3 0 0 18 37 -7.682 -3.195 -0.175 + IL 153 153 3 153 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 21 ] 19 - U - - - + ML 154 153 3 156 3 1 1 17 34 -1.178 -0.948 -4.648 -0.779 -0.356 -2.426 1.293 + D 155 153 3 156 3 0 0 15 32 -10.935 -0.301 -2.413 + IL 156 156 3 156 3 1 1 17 34 -2.344 -0.381 -4.840 0.000 0.000 0.000 0.000 + [ MATL 22 ] 23 - G - - - + ML 157 156 3 159 3 1 1 15 32 -11.979 -0.001 -10.633 -1.165 -2.582 1.649 -1.996 + D 158 156 3 159 3 0 0 14 32 -9.899 -5.412 -0.036 + IL 159 159 3 159 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 23 ] 24 - G - - - + ML 160 159 3 162 3 1 1 14 31 -11.979 -0.255 -2.629 -1.638 -2.479 1.630 -1.310 + D 161 159 3 162 3 0 0 13 31 -9.899 -5.412 -0.036 + IL 162 162 3 162 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 24 ] 25 - U - - - + ML 163 162 3 165 3 1 1 13 25 -1.091 -0.923 -8.380 -1.390 -1.015 -2.668 1.569 + D 164 162 3 165 3 0 0 10 22 -5.788 -0.077 -4.875 + IL 165 165 3 165 3 1 1 12 25 -2.149 -0.388 -6.606 0.000 0.000 0.000 0.000 + [ MATL 25 ] 29 - A - - - + ML 166 165 3 168 2 1 1 1 1 * 0.000 1.756 -3.153 -1.787 -2.181 + D 167 165 3 168 2 0 0 0 0 * 0.000 + IL 168 168 3 168 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 + [ END 26 ] - - - - - - + E 169 168 3 -1 0 0 0 0 0 + [ BEGR 27 ] - - - - - - + S 170 122 1 171 3 0 0 29 47 -12.092 -0.007 -7.747 + IL 171 171 2 171 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 28 ] 34 - a - - - + ML 172 171 2 174 5 1 1 29 47 -7.256 -0.012 -9.618 -11.059 -11.951 0.818 -2.318 0.698 -1.272 + D 173 171 2 174 5 0 0 28 46 -5.414 -0.538 -4.676 -3.051 -2.963 + IL 174 174 3 174 5 1 1 29 48 -2.743 -0.379 -4.422 -6.254 -5.527 0.000 0.000 0.000 0.000 + [ MATP 29 ] 36 55 u a - - + MP 175 174 3 179 6 2 2 28 46 -9.668 -9.537 -0.006 -10.781 -11.061 -11.456 -1.841 -3.067 -3.035 1.351 -2.114 -3.805 2.023 -2.153 -2.665 0.285 -4.278 0.027 2.190 -2.548 -0.313 -1.511 + ML 176 174 3 179 6 1 1 27 45 -6.348 -6.694 -1.177 -1.103 -6.544 -4.073 0.243 -0.066 -0.407 0.147 + MR 177 174 3 179 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 178 174 3 179 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 179 179 5 179 6 1 1 28 46 -2.685 -2.948 -0.691 -4.603 -5.379 -5.040 0.000 0.000 0.000 0.000 + IR 180 180 6 180 5 1 1 27 46 -2.480 -0.468 -5.991 -4.159 -5.265 0.000 0.000 0.000 0.000 + [ MATP 30 ] 38 53 c g - 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C - - - + ML 205 204 6 207 3 1 1 17 35 -8.553 -0.005 -10.746 -2.858 1.177 -3.980 0.621 + D 206 204 6 207 3 0 0 18 36 -6.174 -1.687 -0.566 + IL 207 207 3 207 3 1 1 21 38 -1.578 -0.705 -4.278 0.000 0.000 0.000 0.000 + [ MATL 35 ] 44 - U - - - + ML 208 207 3 210 3 1 1 16 34 -12.092 -0.001 -10.746 -6.241 -3.070 -6.997 1.949 + D 209 207 3 210 3 0 0 18 36 -6.174 -1.687 -0.566 + IL 210 210 3 210 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 36 ] 45 - u - - - + ML 211 210 3 213 3 1 1 15 33 -12.092 -0.001 -10.746 -1.753 -0.640 0.321 0.858 + D 212 210 3 213 3 0 0 17 35 -6.174 -1.687 -0.566 + IL 213 213 3 213 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 37 ] 46 - u - - - + ML 214 213 3 216 3 1 1 13 32 -12.092 -0.001 -10.746 0.215 -0.134 -0.406 0.232 + D 215 213 3 216 3 0 0 16 34 -6.174 -1.687 -0.566 + IL 216 216 3 216 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 38 ] 47 - u - - - + ML 217 216 3 219 3 1 1 12 30 -12.092 -0.001 -10.746 0.131 -0.099 -0.326 0.231 + D 218 216 3 219 3 0 0 15 33 -6.174 -1.687 -0.566 + IL 219 219 3 219 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 39 ] 48 - A - - - + ML 220 219 3 222 3 1 1 10 29 -12.092 -0.001 -10.746 1.608 -5.696 -0.163 -4.686 + D 221 219 3 222 3 0 0 13 32 -6.174 -1.687 -0.566 + IL 222 222 3 222 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 40 ] 49 - A - - - + ML 223 222 3 225 2 1 1 1 1 * 0.000 1.391 -0.504 -2.682 -0.955 + D 224 222 3 225 2 0 0 0 0 * 0.000 + IL 225 225 3 225 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 + [ END 41 ] - - - - - - + E 226 225 3 -1 0 0 0 0 0 +// +HMMER3/f [i1.1 | April 2012] +NAME tRNA +ACC RF00005 +DESC tRNA +LENG 71 +MAXL 253 +ALPH RNA +RF no +MM no +CONS yes +CS yes +MAP yes +DATE Mon Apr 30 08:54:53 2012 +COM [1] /groups/eddy/home/nawrockie/notebook/12_0423_inf_final_stress_tests/wd-infernal/src/cmbuild -F tRNA.cm tRNA.sto +NSEQ 967 +EFFN 186.722610 +CKSUM 1685224748 +STATS LOCAL MSV -8.9378 0.73469 +STATS LOCAL VITERBI -9.6821 0.73469 +STATS LOCAL FORWARD -2.5854 0.73469 +HMM A C G U + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.35282 1.54883 1.34468 1.31539 + 1.38629 1.38629 1.38629 1.38629 + 0.01069 9.17906 4.55379 1.46634 0.26236 0.00000 * + 1 1.69984 2.34438 0.46816 2.35147 1 g - 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- ) + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.17906 9.17906 1.46634 0.26236 1.09861 0.40547 + 66 1.65105 1.55913 1.34975 1.08315 113 u - - ) + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.17906 9.17906 1.46634 0.26236 1.09861 0.40547 + 67 1.61858 1.21007 1.36164 1.39674 114 c - - ) + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.17906 9.17906 1.46634 0.26236 1.09861 0.40547 + 68 1.52317 1.28523 1.30846 1.44751 115 u - - ) + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.17906 9.17906 1.46634 0.26236 1.09861 0.40547 + 69 1.91885 1.12144 1.18740 1.50328 116 c - - ) + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.17906 9.17906 1.46634 0.26236 1.09861 0.40547 + 70 2.35360 0.63294 2.35421 1.27663 117 c - - ) + 1.38629 1.38629 1.38629 1.38629 + 0.02351 9.17906 3.76650 1.46634 0.26236 1.09861 0.40547 + 71 0.60663 2.78665 1.44821 1.84390 119 a - - : + 1.38629 1.38629 1.38629 1.38629 + 0.00011 9.15565 * 1.46634 0.26236 0.00000 * +// +INFERNAL1/a [1.1 | April 2012] +NAME Vault +ACC RF00006 +DESC Vault RNA +STATES 304 +NODES 83 +CLEN 100 +W 181 +ALPH RNA +RF yes +CONS yes +MAP yes +DATE Mon Apr 30 08:54:54 2012 +COM [1] /groups/eddy/home/nawrockie/notebook/12_0423_inf_final_stress_tests/wd-infernal/src/cmbuild -F Vault.cm Vault.sto +COM [2] /groups/eddy/home/nawrockie/notebook/12_0423_inf_final_stress_tests/wd-infernal/src/cmcalibrate --mpi Vault.cm +PBEGIN 0.05 +PEND 0.05 +WBETA 1e-07 +QDBBETA1 1e-07 +QDBBETA2 1e-15 +N2OMEGA 1.52588e-05 +N3OMEGA 1.52588e-05 +ELSELF -0.08926734 +NSEQ 75 +EFFN 4.368496 +CKSUM 2397722235 +NULL 0.000 0.000 0.000 0.000 +GA 29.00 +TC 29.39 +NC 28.20 +EFP7GF -10.4482 0.71855 +ECMLC 0.69230 -6.00388 2.28041 1600000 371500 0.003230 +ECMGC 0.43256 -15.96507 -4.24742 1600000 63581 0.006291 +ECMLI 0.63611 -4.87878 3.73222 1600000 287121 0.004179 +ECMGI 0.45930 -10.59291 -0.39663 1600000 43242 0.009250 +CM + [ ROOT 0 ] - - - - - - + S 0 -1 0 1 4 1 1 181 278 -7.707 -7.914 -0.180 -3.205 + IL 1 1 2 1 4 6 44 183 280 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 + IR 2 2 3 2 3 5 44 183 280 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 1 ] 1 - G - G - + ML 3 2 3 5 3 5 43 181 278 -8.901 -0.033 -5.591 -1.131 -2.715 1.652 -2.007 + D 4 2 3 5 3 1 39 180 276 -6.507 -0.590 -1.623 + IL 5 5 3 5 3 4 43 182 278 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 2 ] - 164 - U - U + MR 6 5 3 8 3 5 43 180 277 -8.981 -0.012 -7.299 -0.713 -1.122 -1.167 1.313 + D 7 5 3 8 3 0 36 178 274 -6.953 -1.541 -0.626 + IR 8 8 3 8 3 4 42 181 277 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 3 ] - 163 - U - U + MR 9 8 3 11 3 5 42 179 276 -9.000 -0.012 -7.318 -2.343 -1.933 -3.096 1.776 + D 10 8 3 11 3 0 35 177 273 -6.776 -1.954 -0.448 + IR 11 11 3 11 3 3 41 180 276 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 4 ] - 162 - U - U + MR 12 11 3 14 3 4 41 178 275 -9.000 -0.012 -7.318 -1.758 -1.793 -2.680 1.705 + D 13 11 3 14 3 0 34 176 272 -6.776 -1.954 -0.448 + IR 14 14 3 14 3 3 40 179 275 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 5 ] - 161 - U - U + MR 15 14 3 17 3 4 40 177 274 -9.000 -0.029 -5.783 -1.301 -1.340 -2.332 1.585 + D 16 14 3 17 3 0 34 175 271 -6.776 -1.954 -0.448 + IR 17 17 3 17 3 3 39 178 274 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 6 ] - 160 - c - c + MR 18 17 3 20 5 4 40 177 273 -7.688 -0.026 -7.503 -7.715 -8.607 -1.051 0.923 -2.017 0.459 + D 19 17 3 20 5 0 33 174 271 -5.684 -1.039 -2.558 -4.742 -1.802 + IR 20 20 3 20 5 2 38 177 273 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 7 ] 2 159 g c g c + MP 21 20 3 25 6 5 39 176 272 -9.418 -9.357 -0.017 -8.134 -8.413 -8.808 -3.404 -2.008 -3.390 0.950 -3.521 -4.102 1.701 -3.711 -3.582 2.715 -3.994 0.042 0.730 -3.386 -1.098 -2.372 + ML 22 20 3 25 6 1 35 173 270 -6.399 -6.745 -1.459 -0.869 -6.595 -4.124 0.181 -0.365 -0.401 0.414 + MR 23 20 3 25 6 1 34 173 270 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 24 20 3 25 6 0 30 170 267 -9.399 -8.097 -1.823 -4.576 -4.594 -0.669 + IL 25 25 5 25 6 2 36 175 271 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 26 26 6 26 5 2 37 175 271 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 8 ] 3 158 G C G C + MP 27 26 6 31 6 5 37 174 270 -9.436 -9.376 -0.017 -8.152 -8.432 -8.827 -3.983 -1.861 -3.897 1.435 -4.859 -4.547 -0.147 -4.446 -4.113 3.084 -4.450 1.060 -0.403 -3.834 -2.119 -2.839 + ML 28 26 6 31 6 1 34 172 268 -6.399 -6.745 -1.115 -1.154 -6.595 -4.124 0.189 0.043 -0.478 0.153 + MR 29 26 6 31 6 1 33 171 268 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 30 26 6 31 6 0 29 167 264 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 31 31 5 31 6 1 35 173 269 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 32 32 6 32 5 2 35 173 269 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 9 ] 4 157 c g C G + MP 33 32 6 37 6 5 36 172 268 -9.446 -9.385 -0.017 -8.162 -8.441 -8.836 -3.868 -3.773 -3.849 0.088 -2.877 -4.562 2.755 -3.037 -3.808 0.426 -4.275 -1.643 2.229 -4.062 -0.028 -2.661 + ML 34 32 6 37 6 1 32 170 266 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 35 32 6 37 6 1 32 169 266 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 36 32 6 37 6 0 28 166 262 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 37 37 5 37 6 1 34 171 267 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 38 38 6 38 5 1 34 171 267 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 10 ] 5 156 c g c g + MP 39 38 6 43 6 4 34 170 266 -9.446 -9.385 -0.017 -8.162 -8.441 -8.836 -3.532 -3.492 -3.574 0.387 -1.423 -4.338 2.584 -3.374 -3.545 0.399 -4.044 -1.464 2.220 -3.765 0.232 -2.453 + ML 40 38 6 43 6 1 31 168 264 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 41 38 6 43 6 1 31 167 264 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 42 38 6 43 6 0 28 164 261 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 43 43 5 43 6 1 32 169 265 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 44 44 6 44 5 1 32 169 265 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 11 ] 6 155 G C G C + MP 45 44 6 49 6 4 32 168 264 -9.446 -9.385 -0.017 -8.162 -8.441 -8.836 -4.160 -2.825 -4.095 1.628 -5.107 -4.763 -0.354 -4.597 -4.219 3.153 -4.579 0.797 -0.608 -4.064 -2.340 -3.003 + ML 46 44 6 49 6 1 30 166 263 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 47 44 6 49 6 1 30 166 262 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 48 44 6 49 6 0 27 164 260 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 49 49 5 49 6 1 31 167 264 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 50 50 6 50 5 1 31 167 263 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 12 ] 7 154 G C G C + MP 51 50 6 55 4 2 30 166 262 -7.707 -7.914 -0.322 -2.386 -5.770 -3.635 -6.023 -0.526 -6.940 -5.158 -1.941 -6.379 -5.006 3.797 -5.287 -0.760 -2.230 -5.155 -4.050 -4.891 + ML 52 50 6 55 4 1 29 165 262 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 + MR 53 50 6 55 4 1 28 164 261 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 + D 54 50 6 55 4 0 27 163 260 -4.568 -4.250 -2.265 -0.520 + IL 55 55 5 55 4 1 30 166 262 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 + IR 56 56 6 56 3 1 29 165 262 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 13 ] 8 - C - C - + ML 57 56 6 59 3 1 28 164 260 -4.834 -0.281 -2.818 -1.425 1.612 -2.679 -1.273 + D 58 56 6 59 3 0 27 163 259 -8.021 -0.401 -2.065 + IL 59 59 3 59 3 1 29 164 261 -1.581 -0.703 -4.281 0.000 0.000 0.000 0.000 + [ MATL 14 ] 10 - U - U - + ML 60 59 3 62 3 1 28 163 260 -8.491 -0.014 -7.145 -0.818 -0.895 -1.524 1.349 + D 61 59 3 62 3 0 25 161 258 -7.698 -0.395 -2.090 + IL 62 62 3 62 3 1 27 163 260 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 15 ] 11 - U - U - + ML 63 62 3 65 3 1 27 162 259 -8.681 -0.013 -7.335 -0.786 -1.323 -1.305 1.387 + D 64 62 3 65 3 0 22 160 256 -6.174 -1.687 -0.566 + IL 65 65 3 65 3 1 26 162 259 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 16 ] 12 - U - U - + ML 66 65 3 68 3 1 26 161 258 -8.681 -0.013 -7.335 -1.336 -1.294 -2.358 1.585 + D 67 65 3 68 3 0 21 159 255 -6.174 -1.687 -0.566 + IL 68 68 3 68 3 1 25 161 258 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 17 ] 13 - A - A - + ML 69 68 3 71 3 1 25 160 257 -9.034 -0.012 -7.352 1.816 -3.126 -2.170 -2.814 + D 70 68 3 71 3 0 20 158 255 -5.620 -0.734 -1.403 + IL 71 71 3 71 3 1 24 160 257 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 18 ] - 153 - U - U + MR 72 71 3 74 3 1 24 159 256 -9.034 -0.012 -7.352 -1.110 -0.036 -2.017 1.210 + D 73 71 3 74 3 0 17 157 253 -6.390 -1.568 -0.620 + IR 74 74 3 74 3 1 23 159 256 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 19 ] - 152 - g - u + MR 75 74 3 77 3 1 23 158 255 -9.034 -0.028 -5.878 -0.259 0.009 0.157 0.061 + D 76 74 3 77 3 0 16 156 252 -6.390 -1.568 -0.620 + IR 77 77 3 77 3 1 22 158 255 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 20 ] - 151 - U - U + MR 78 77 3 80 3 1 23 157 254 -9.018 -0.012 -7.336 -1.027 -0.467 -1.547 1.289 + D 79 77 3 80 3 0 15 155 251 -6.586 -1.247 -0.815 + IR 80 80 3 80 3 1 21 157 254 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 21 ] - 150 - C - C + MR 81 80 3 83 3 1 22 156 253 -9.034 -0.012 -7.352 -2.398 1.773 -3.412 -1.743 + D 82 80 3 83 3 0 14 154 250 -6.390 -1.568 -0.620 + IR 83 83 3 83 3 1 20 156 253 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 22 ] - 149 - G - G + MR 84 83 3 86 5 1 21 155 252 -7.736 -0.025 -7.552 -7.764 -8.655 -0.938 -3.003 1.666 -2.472 + D 85 83 3 86 5 0 13 153 250 -5.352 -0.707 -2.978 -4.409 -2.404 + IR 86 86 3 86 5 1 18 155 252 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 23 ] 14 148 G C G C + MP 87 86 3 91 6 2 21 154 251 -9.446 -9.385 -0.017 -8.162 -8.441 -8.836 -4.058 -2.759 -3.968 0.753 -4.813 -4.408 -0.141 -4.563 -4.178 3.343 -2.616 0.470 -0.408 -2.791 -2.109 -2.956 + ML 88 86 3 91 6 1 14 152 248 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 89 86 3 91 6 1 13 152 248 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 90 86 3 91 6 0 9 148 244 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 91 91 5 91 6 1 16 153 250 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 92 92 6 92 5 1 17 153 250 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 24 ] 15 147 C G C G + MP 93 92 6 97 6 2 19 152 249 -9.446 -9.385 -0.017 -8.162 -8.441 -8.836 -7.061 -7.108 -6.386 -3.321 -4.912 -4.389 3.925 -6.159 -6.763 -3.157 -6.485 -5.176 -1.831 -7.090 -3.013 -5.588 + ML 94 92 6 97 6 1 14 150 247 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 95 92 6 97 6 1 12 150 246 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 96 92 6 97 6 0 8 146 243 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 97 97 5 97 6 1 16 151 248 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 98 98 6 98 5 1 16 151 248 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 25 ] 16 146 u g u g + MP 99 98 6 103 6 2 18 150 247 -9.446 -9.385 -0.017 -8.162 -8.441 -8.836 -2.844 -1.557 -2.958 0.481 -2.529 -3.749 1.822 -3.033 -2.991 0.548 -2.443 -1.199 1.081 -3.123 2.436 -2.043 + ML 100 98 6 103 6 1 13 148 245 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 101 98 6 103 6 1 11 148 244 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 102 98 6 103 6 0 8 145 242 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 103 103 5 103 6 1 14 149 246 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 104 104 6 104 5 1 14 149 246 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 26 ] 17 145 c g c g + MP 105 104 6 109 4 2 16 148 245 -3.306 -7.914 -0.181 -6.328 -2.899 -2.949 -3.022 0.526 -1.297 -3.845 2.842 -3.039 -1.555 0.610 -3.564 -0.842 1.211 -3.183 0.293 -2.041 + ML 106 104 6 109 4 1 12 147 243 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 + MR 107 104 6 109 4 1 9 146 243 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 + D 108 104 6 109 4 0 8 145 241 -4.568 -4.250 -2.265 -0.520 + IL 109 109 5 109 4 1 15 147 244 -2.463 -3.146 -0.545 -5.632 0.000 0.000 0.000 0.000 + IR 110 110 6 110 3 1 13 147 244 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 27 ] 19 - A - A - + ML 111 110 6 113 5 1 15 146 243 -7.736 -0.025 -7.552 -7.764 -8.655 1.787 -2.787 -2.640 -2.036 + D 112 110 6 113 5 0 7 144 240 -4.959 -0.803 -4.221 -2.596 -2.508 + IL 113 113 3 113 5 1 11 146 242 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 + [ MATP 28 ] 20 144 G C G C + MP 114 113 3 118 6 2 14 145 242 -9.446 -9.385 -0.017 -8.162 -8.441 -8.836 -4.892 -3.253 -4.907 0.078 -5.709 -4.819 -0.939 -5.420 -2.919 3.667 -2.940 -0.898 -1.225 -4.478 -2.960 -3.861 + ML 115 113 3 118 6 1 9 143 239 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 116 113 3 118 6 1 8 142 239 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 117 113 3 118 6 0 5 138 235 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 118 118 5 118 6 1 10 144 241 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 119 119 6 119 5 1 11 144 240 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 29 ] 21 143 c g C G + MP 120 119 6 124 6 2 13 143 240 -9.446 -9.385 -0.017 -8.162 -8.441 -8.836 -3.901 -3.816 -3.873 0.042 -1.998 -4.574 2.856 -3.551 -3.835 0.380 -4.296 -1.695 2.122 -4.092 -0.237 -2.688 + ML 121 119 6 124 6 1 8 141 237 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 122 119 6 124 6 1 8 140 237 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 123 119 6 124 6 0 5 137 233 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 124 124 5 124 6 1 10 142 239 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 125 125 6 125 5 1 10 142 239 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 30 ] 22 142 G C G C + MP 126 125 6 130 6 2 11 141 238 -9.446 -9.385 -0.017 -8.162 -8.441 -8.836 -5.089 -3.338 -5.151 0.141 -6.188 -5.052 -1.291 -5.596 -4.729 3.634 -5.046 0.321 -1.556 -4.754 -3.337 -4.033 + ML 127 125 6 130 6 1 8 139 235 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 128 125 6 130 6 1 7 138 235 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 129 125 6 130 6 0 4 135 232 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 130 130 5 130 6 1 9 140 237 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 131 131 6 131 5 1 9 140 237 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 31 ] 23 141 G C G C + MP 132 131 6 136 4 2 9 139 236 -7.707 -2.696 -0.272 -6.328 -5.928 -3.679 -6.164 -0.666 -6.761 -3.229 -1.795 -6.618 -5.088 3.816 -5.307 -1.505 -2.140 -5.050 -3.910 -5.135 + ML 133 131 6 136 4 1 7 137 233 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 + MR 134 131 6 136 4 1 5 136 232 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 + D 135 131 6 136 4 0 4 134 231 -4.568 -4.250 -2.265 -0.520 + IL 136 136 5 136 4 1 8 140 237 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 + IR 137 137 6 137 3 1 9 144 240 -0.322 -2.392 -6.702 0.000 0.000 0.000 0.000 + [ MATL 32 ] 24 - U - U - + ML 138 137 6 140 3 1 7 133 230 -6.359 -0.027 -7.335 -1.067 -1.538 -2.305 1.573 + D 139 137 6 140 3 0 3 131 228 -6.174 -1.687 -0.566 + IL 140 140 3 140 3 1 7 134 230 -1.494 -0.760 -4.195 0.000 0.000 0.000 0.000 + [ MATL 33 ] 26 - U - U - + ML 141 140 3 143 3 1 6 132 229 -8.681 -0.026 -6.004 -2.054 -2.140 -2.976 1.768 + D 142 140 3 143 3 0 3 130 227 -6.174 -1.687 -0.566 + IL 143 143 3 143 3 1 6 133 229 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 34 ] 27 - A - A - + ML 144 143 3 146 3 1 5 131 228 -8.667 -0.013 -7.321 1.179 -0.329 -1.603 -0.711 + D 145 143 3 146 3 0 2 129 226 -6.366 -1.879 -0.482 + IL 146 146 3 146 3 1 5 132 229 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 35 ] 28 - C - C - + ML 147 146 3 149 3 1 4 131 227 -9.021 -0.254 -2.648 -2.177 1.710 -3.179 -1.336 + D 148 146 3 149 3 0 2 129 225 -5.740 -0.854 -1.225 + IL 149 149 3 149 3 1 6 131 228 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 36 ] - 123 - C - C + MR 150 149 3 152 3 1 7 130 226 -8.781 -0.033 -5.625 -2.382 1.729 -3.220 -1.376 + D 151 149 3 152 3 0 0 127 224 -8.044 -2.698 -0.248 + IR 152 152 3 152 3 1 5 130 227 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 37 ] - 122 - a - A + MR 153 152 3 155 5 1 7 129 225 -7.495 -0.029 -7.310 -7.523 -8.414 0.997 -0.745 -0.910 -0.191 + D 154 152 3 155 5 0 0 127 223 -6.491 -0.770 -1.918 -5.548 -3.103 + IR 155 155 3 155 5 1 3 129 225 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 38 ] 29 121 u a u a + MP 156 155 3 160 6 2 8 128 224 -9.389 -9.328 -0.017 -8.104 -8.384 -8.779 -2.409 -2.530 -2.559 0.677 -2.271 -3.381 1.556 -2.728 -2.601 0.712 -3.148 -0.940 1.819 -1.940 1.816 -0.456 + ML 157 155 3 160 6 1 2 126 223 -6.901 -7.247 -0.820 -1.431 -7.097 -4.627 -0.247 -0.532 -0.874 0.941 + MR 158 155 3 160 6 1 2 125 222 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 159 155 3 160 6 0 0 121 217 -9.196 -7.894 -3.691 -4.373 -4.391 -0.285 + IL 160 160 5 160 6 1 3 127 223 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 161 161 6 161 5 1 3 127 223 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 39 ] 30 120 U A u a + MP 162 161 6 166 6 2 7 126 222 -9.431 -9.371 -0.017 -8.147 -8.427 -8.822 -4.153 -4.253 -4.294 -0.958 -3.417 -5.112 -0.013 -4.410 -4.313 -0.909 -4.866 -2.594 3.674 -2.944 -1.521 -2.817 + ML 163 161 6 166 6 1 2 124 220 -6.367 -6.713 -1.153 -1.122 -6.563 -4.092 0.217 -0.364 -0.362 0.359 + MR 164 161 6 166 6 1 1 123 220 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 165 161 6 166 6 0 0 119 216 -9.196 -7.894 -3.691 -4.373 -4.391 -0.285 + IL 166 166 5 166 6 1 2 125 221 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 167 167 6 167 5 1 3 125 221 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 40 ] 31 119 C G C G + MP 168 167 6 172 6 2 6 124 220 -9.439 -9.378 -0.017 -8.154 -8.434 -8.829 -5.643 -5.729 -5.457 -2.226 -1.769 -3.327 3.839 -5.409 -5.642 -2.143 -5.784 -3.958 -1.192 -5.849 -2.507 -4.606 + ML 169 167 6 172 6 1 1 122 218 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 170 167 6 172 6 1 1 121 218 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 171 167 6 172 6 0 0 118 214 -9.196 -7.894 -3.691 -4.373 -4.391 -0.285 + IL 172 172 5 172 6 1 2 123 220 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 173 173 6 173 5 1 2 123 219 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 41 ] 32 118 g c g c + MP 174 173 6 178 6 2 5 122 218 -9.439 -9.378 -0.017 -8.154 -8.434 -8.829 -2.037 -0.375 -2.204 1.092 -1.921 -1.342 1.044 -2.579 -2.295 2.207 -2.826 -0.183 0.969 -0.253 -0.442 -1.430 + ML 175 173 6 178 6 1 1 120 217 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 176 173 6 178 6 1 1 120 216 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 177 173 6 178 6 0 0 117 213 -9.196 -7.894 -3.691 -4.373 -4.391 -0.285 + IL 178 178 5 178 6 1 2 121 218 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 179 179 6 179 5 1 2 121 217 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 42 ] 33 117 a u a u + MP 180 179 6 184 4 2 4 120 216 -7.693 -7.900 -0.031 -6.314 -1.816 -1.873 -2.016 1.612 -2.014 -2.340 1.242 0.029 -2.064 1.184 -2.604 0.321 1.092 -2.135 -0.222 0.224 + ML 181 179 6 184 4 1 1 119 215 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 + MR 182 179 6 184 4 1 1 118 214 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 + D 183 179 6 184 4 0 0 116 213 -4.706 -4.387 -2.403 -0.464 + IL 184 184 5 184 4 1 1 120 216 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 + IR 185 185 6 185 3 1 1 119 216 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 43 ] 34 - c - a - + ML 186 185 6 188 3 1 3 118 214 -8.667 -0.013 -7.321 0.088 0.206 -0.562 0.146 + D 187 185 6 188 3 0 0 115 212 -6.366 -1.879 -0.482 + IL 188 188 3 188 3 1 1 118 215 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 44 ] 35 - u - a - + ML 189 188 3 191 3 1 2 117 213 -8.667 -0.013 -7.321 0.324 -0.462 -0.457 0.371 + D 190 188 3 191 3 0 0 114 211 -6.366 -1.879 -0.482 + IL 191 191 3 191 3 1 1 117 214 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 45 ] 36 - a - a - + ML 192 191 3 194 3 1 2 116 212 -8.667 -0.013 -7.321 0.476 -0.269 -0.412 0.039 + D 193 191 3 194 3 0 0 113 210 -6.366 -1.879 -0.482 + IL 194 194 3 194 3 1 1 116 213 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 46 ] 37 - u - a - + ML 195 194 3 197 3 1 2 115 211 -8.667 -0.013 -7.321 0.327 -0.498 -0.406 0.359 + D 196 194 3 197 3 0 0 112 209 -6.366 -1.879 -0.482 + IL 197 197 3 197 3 1 1 115 212 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 47 ] 38 - u - u - + ML 198 197 3 200 3 1 1 114 210 -8.667 -0.013 -7.321 0.115 0.014 -0.900 0.456 + D 199 197 3 200 3 0 0 111 208 -6.366 -1.879 -0.482 + IL 200 200 3 200 3 1 1 114 211 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 48 ] 39 - a - a - + ML 201 200 3 203 3 1 1 113 209 -8.667 -0.013 -7.321 0.165 -0.170 -0.132 0.107 + D 202 200 3 203 3 0 0 110 207 -6.366 -1.879 -0.482 + IL 203 203 3 203 3 1 1 113 210 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 49 ] 40 - u - a - + ML 204 203 3 206 3 1 1 112 208 -8.667 -0.013 -7.321 0.298 -0.282 -0.564 0.347 + D 205 203 3 206 3 0 0 109 206 -6.366 -1.879 -0.482 + IL 206 206 3 206 3 1 1 113 209 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 50 ] 41 - a - a - + ML 207 206 3 209 3 1 1 111 207 -8.667 -0.013 -7.321 0.275 -0.218 -0.250 0.124 + D 208 206 3 209 3 0 0 108 205 -6.366 -1.879 -0.482 + IL 209 209 3 209 3 1 1 112 208 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 51 ] 42 - a - a - + ML 210 209 3 212 3 1 1 110 206 -8.667 -0.013 -7.321 0.566 -0.320 -0.700 0.141 + D 211 209 3 212 3 0 0 107 204 -6.366 -1.879 -0.482 + IL 212 212 3 212 3 1 1 111 207 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 52 ] 43 - u - a - + ML 213 212 3 215 3 1 1 109 205 -8.667 -0.013 -7.321 0.254 -0.169 -0.632 0.348 + D 214 212 3 215 3 0 0 106 203 -6.366 -1.879 -0.482 + IL 215 215 3 215 3 1 1 110 206 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 53 ] 44 - u - u - + ML 216 215 3 218 3 1 1 108 205 -8.667 -0.013 -7.321 0.199 -0.217 -0.533 0.380 + D 217 215 3 218 3 0 0 105 202 -6.366 -1.879 -0.482 + IL 218 218 3 218 3 1 1 109 205 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 54 ] 45 - u - u - + ML 219 218 3 221 3 1 1 107 204 -8.667 -0.013 -7.321 -0.041 -0.331 -0.320 0.517 + D 220 218 3 221 3 0 0 104 201 -6.366 -1.879 -0.482 + IL 221 221 3 221 3 1 1 108 204 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 55 ] 46 - u - u - + ML 222 221 3 224 3 1 1 106 203 -8.667 -0.013 -7.321 0.103 0.047 -0.633 0.320 + D 223 221 3 224 3 0 0 103 200 -6.366 -1.879 -0.482 + IL 224 224 3 224 3 1 1 107 203 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 56 ] 47 - a - a - + ML 225 224 3 227 3 1 1 105 202 -8.667 -0.013 -7.321 0.430 -0.549 -0.632 0.406 + D 226 224 3 227 3 0 0 102 199 -6.366 -1.879 -0.482 + IL 227 227 3 227 3 1 1 106 202 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 57 ] 48 - u - u - + ML 228 227 3 230 3 1 1 104 201 -8.667 -0.013 -7.321 0.157 -0.190 -0.539 0.401 + D 229 227 3 230 3 0 0 101 198 -6.366 -1.879 -0.482 + IL 230 230 3 230 3 1 1 105 201 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 58 ] 49 - u - u - + ML 231 230 3 233 3 1 1 103 200 -8.667 -0.013 -7.321 0.062 -0.033 -0.736 0.463 + D 232 230 3 233 3 0 0 100 197 -6.366 -1.879 -0.482 + IL 233 233 3 233 3 1 1 104 200 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 59 ] 50 - u - u - + ML 234 233 3 236 3 1 1 102 199 -8.667 -0.013 -7.321 0.111 -0.501 -0.744 0.693 + D 235 233 3 236 3 0 0 99 196 -6.366 -1.879 -0.482 + IL 236 236 3 236 3 1 1 103 199 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 60 ] 51 - u - a - + ML 237 236 3 239 3 1 1 101 198 -8.667 -0.013 -7.321 0.164 0.140 -0.988 0.348 + D 238 236 3 239 3 0 0 98 195 -6.366 -1.879 -0.482 + IL 239 239 3 239 3 1 1 102 198 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 61 ] 52 - u - a - + ML 240 239 3 242 3 1 1 100 197 -8.667 -0.013 -7.321 0.081 0.123 -0.754 0.333 + D 241 239 3 242 3 0 0 97 193 -6.366 -1.879 -0.482 + IL 242 242 3 242 3 1 1 101 197 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 62 ] 53 - u - a - + ML 243 242 3 245 3 1 1 99 196 -8.667 -0.024 -6.167 0.059 0.054 -0.244 0.105 + D 244 242 3 245 3 0 0 96 192 -6.366 -1.879 -0.482 + IL 245 245 3 245 3 1 1 100 196 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 63 ] 54 - u - u - + ML 246 245 3 248 3 1 1 98 195 -8.656 -0.074 -4.401 0.169 -0.325 -0.536 0.473 + D 247 245 3 248 3 0 0 94 191 -6.505 -2.018 -0.430 + IL 248 248 3 248 3 1 1 99 195 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 64 ] 55 - a - a - + ML 249 248 3 251 3 1 1 97 194 -8.596 -0.067 -4.551 0.235 -0.081 -0.340 0.120 + D 250 248 3 251 3 0 0 92 189 -7.078 -2.591 -0.275 + IL 251 251 3 251 3 1 1 98 194 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 65 ] 56 - u - u - + ML 252 251 3 254 3 1 1 96 193 -8.543 -0.014 -7.197 0.066 0.041 -0.515 0.293 + D 253 251 3 254 3 0 0 91 187 -7.430 -2.943 -0.211 + IL 254 254 3 254 3 1 1 97 193 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 66 ] 57 - a - a - + ML 255 254 3 257 3 1 1 95 192 -8.543 -0.057 -4.801 0.192 -0.028 -0.416 0.172 + D 256 254 3 257 3 0 0 90 186 -7.430 -2.943 -0.211 + IL 257 257 3 257 3 1 1 96 192 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 67 ] 58 - u - a - + ML 258 257 3 260 3 1 1 95 191 -8.500 -0.043 -5.241 0.018 0.144 -0.439 0.195 + D 259 257 3 260 3 0 0 88 185 -7.654 -3.167 -0.178 + IL 260 260 3 260 3 1 1 95 191 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 68 ] 59 - u - u - + ML 261 260 3 263 3 1 1 94 190 -8.472 -0.035 -5.562 0.013 0.036 -0.509 0.337 + D 262 260 3 263 3 0 0 87 183 -7.783 -3.296 -0.162 + IL 263 263 3 263 3 1 1 94 191 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 69 ] 60 - u - u - + ML 264 263 3 266 3 1 1 93 189 -8.451 -0.055 -4.863 -0.088 -0.264 -0.190 0.433 + D 265 263 3 266 3 0 0 85 182 -7.867 -3.380 -0.153 + IL 266 266 3 266 3 1 1 93 190 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 70 ] 61 - u - u - + ML 267 266 3 269 3 1 1 92 188 -8.412 -0.146 -3.424 -0.066 -0.061 -0.497 0.462 + D 268 266 3 269 3 0 0 83 180 -8.016 -3.529 -0.137 + IL 269 269 3 269 3 1 1 93 189 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 71 ] 62 - u - a - + ML 270 269 3 272 3 1 1 91 188 -8.283 -0.070 -4.499 0.063 -0.146 -0.474 0.413 + D 271 269 3 272 3 0 0 81 178 -8.396 -3.909 -0.104 + IL 272 272 3 272 3 1 1 92 188 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 72 ] 63 - c - a - + ML 273 272 3 275 3 1 1 91 187 -8.230 -0.102 -3.950 -0.069 0.183 -0.311 0.145 + D 274 272 3 275 3 0 0 79 175 -8.519 -4.032 -0.095 + IL 275 275 3 275 3 1 1 91 188 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 73 ] 64 - u - u - + ML 276 275 3 278 3 1 1 90 186 -8.146 -0.092 -4.097 -0.141 -0.067 -0.356 0.441 + D 277 275 3 278 3 0 0 75 171 -8.687 -4.200 -0.084 + IL 278 278 3 278 3 1 1 90 187 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 74 ] 65 - u - u - + ML 279 278 3 281 3 1 1 89 186 -0.992 -1.036 -6.727 -0.236 -0.009 -0.317 0.439 + D 280 278 3 281 3 0 0 60 156 -8.812 -0.169 -3.204 + IL 281 281 3 281 3 1 1 92 188 -0.276 -2.568 -7.578 0.000 0.000 0.000 0.000 + [ MATL 75 ] 110 - u - u - + ML 282 281 3 284 3 1 1 19 38 -8.681 -0.013 -7.335 -0.050 -0.085 -0.342 0.381 + D 283 281 3 284 3 0 0 19 38 -6.174 -1.687 -0.566 + IL 284 284 3 284 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 76 ] 111 - u - g - + ML 285 284 3 287 3 1 1 18 37 -8.681 -0.013 -7.335 0.010 -0.217 0.056 0.128 + D 286 284 3 287 3 0 0 18 37 -6.174 -1.687 -0.566 + IL 287 287 3 287 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 77 ] 112 - g - g - + ML 288 287 3 290 3 1 1 17 36 -8.681 -0.013 -7.335 -0.133 -0.538 0.438 0.062 + D 289 287 3 290 3 0 0 17 35 -6.174 -1.687 -0.566 + IL 290 290 3 290 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 78 ] 113 - g - g - + ML 291 290 3 293 3 1 1 16 34 -8.681 -0.013 -7.335 -0.195 -0.745 0.546 0.098 + D 292 290 3 293 3 0 0 16 34 -6.174 -1.687 -0.566 + IL 293 293 3 293 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 79 ] 114 - G - G - + ML 294 293 3 296 3 1 1 14 33 -8.681 -0.013 -7.335 -0.505 -1.312 1.184 -0.690 + D 295 293 3 296 3 0 0 15 33 -6.174 -1.687 -0.566 + IL 296 296 3 296 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 80 ] 115 - G - G - + ML 297 296 3 299 3 1 1 13 31 -8.681 -0.013 -7.335 -2.020 -3.750 1.835 -3.177 + D 298 296 3 299 3 0 0 13 32 -6.174 -1.687 -0.566 + IL 299 299 3 299 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 81 ] 116 - U - U - + ML 300 299 3 302 2 1 1 1 1 * 0.000 -0.669 -0.946 -1.933 1.373 + D 301 299 3 302 2 0 0 0 0 * 0.000 + IL 302 302 3 302 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 + [ END 82 ] - - - - - - + E 303 302 3 -1 0 0 0 0 0 +// +HMMER3/f [i1.1 | April 2012] +NAME Vault +ACC RF00006 +DESC Vault RNA +LENG 100 +MAXL 365 +ALPH RNA +RF yes +MM no +CONS yes +CS yes +MAP yes +DATE Mon Apr 30 08:54:54 2012 +COM [1] /groups/eddy/home/nawrockie/notebook/12_0423_inf_final_stress_tests/wd-infernal/src/cmbuild -F Vault.cm Vault.sto +NSEQ 75 +EFFN 6.824398 +CKSUM 2397722235 +STATS LOCAL MSV -9.1834 0.71855 +STATS LOCAL VITERBI -10.0399 0.71855 +STATS LOCAL FORWARD -3.5401 0.71855 +HMM A C G U + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.60500 1.33501 1.37221 1.26440 + 1.38629 1.38629 1.38629 1.38629 + 0.15638 4.56837 2.00697 1.46634 0.26236 0.00000 * + 1 2.33676 3.59062 0.18886 3.03914 1 g G - : + 1.38629 1.38629 1.38629 1.38629 + 0.02397 4.43596 4.43596 1.46634 0.26236 0.25235 1.50047 + 2 2.00568 1.51044 0.66364 2.04295 2 g g - < + 1.38629 1.38629 1.38629 1.38629 + 0.02127 4.55442 4.55442 1.46634 0.26236 0.61869 0.77360 + 3 1.64787 2.92405 0.36893 2.77504 3 g G - < + 1.38629 1.38629 1.38629 1.38629 + 0.02097 4.56837 4.56837 1.46634 0.26236 1.09861 0.40547 + 4 2.72521 0.77290 2.35878 0.97217 4 c C - < + 1.38629 1.38629 1.38629 1.38629 + 0.02097 4.56837 4.56837 1.46634 0.26236 1.09861 0.40547 + 5 2.48617 0.85130 2.37225 0.92473 5 c c - < + 1.38629 1.38629 1.38629 1.38629 + 0.02097 4.56837 4.56837 1.46634 0.26236 1.09861 0.40547 + 6 1.55078 3.13717 0.36662 2.96733 6 g G - < + 1.38629 1.38629 1.38629 1.38629 + 0.02097 4.56837 4.56837 1.46634 0.26236 1.09861 0.40547 + 7 3.34032 4.36823 0.06392 4.28145 7 G G - < + 1.38629 1.38629 1.38629 1.38629 + 0.17925 4.56837 1.87255 1.46634 0.26236 1.09861 0.40547 + 8 2.67382 0.17360 3.74830 2.70573 8 c C - - + 1.38629 1.38629 1.38629 1.38629 + 0.27444 3.36649 1.58233 0.59691 0.79964 0.17173 1.84648 + 9 2.15002 2.15279 2.63443 0.36298 10 u U - 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- + 1.38629 1.38629 1.38629 1.38629 + 0.02097 4.56837 4.56837 1.46634 0.26236 1.09861 0.40547 + 18 2.99950 3.84126 0.10004 3.73303 20 G G - < + 1.38629 1.38629 1.38629 1.38629 + 0.02097 4.56837 4.56837 1.46634 0.26236 1.09861 0.40547 + 19 2.78165 0.68097 2.40424 1.07411 21 c C - < + 1.38629 1.38629 1.38629 1.38629 + 0.02097 4.56837 4.56837 1.46634 0.26236 1.09861 0.40547 + 20 2.81964 3.93402 0.10713 3.79875 22 G G - < + 1.38629 1.38629 1.38629 1.38629 + 0.02097 4.56837 4.56837 1.46634 0.26236 1.09861 0.40547 + 21 3.46156 3.96311 0.06577 4.32232 23 g G - < + 1.38629 1.38629 1.38629 1.38629 + 0.02097 4.56837 4.56837 1.46634 0.26236 1.09861 0.40547 + 22 2.29900 2.73969 3.37299 0.22219 24 u U - - + 1.38629 1.38629 1.38629 1.38629 + 0.03184 3.86477 4.56837 0.80370 0.59360 1.09861 0.40547 + 23 3.12810 3.22733 3.84891 0.11067 26 u U - - + 1.38629 1.38629 1.38629 1.38629 + 0.03866 4.56837 3.59201 1.46634 0.26236 1.09861 0.40547 + 24 0.48670 1.59705 2.80642 2.10016 27 a A - - + 1.38629 1.38629 1.38629 1.38629 + 0.02134 4.55105 4.55105 1.46634 0.26236 1.53789 0.24186 + 25 3.26756 0.14018 4.01503 2.59485 28 c C - - + 1.38629 1.38629 1.38629 1.38629 + 0.02134 4.55105 4.55105 1.46634 0.26236 1.53789 0.24186 + 26 2.26859 1.73509 2.18766 0.49761 29 u u - < + 1.38629 1.38629 1.38629 1.38629 + 0.02134 4.55105 4.55105 1.46634 0.26236 1.53789 0.24186 + 27 3.72936 3.25820 3.69999 0.09123 30 u u - < + 1.38629 1.38629 1.38629 1.38629 + 0.02134 4.55105 4.55105 1.46634 0.26236 1.53789 0.24186 + 28 4.30192 0.06226 4.27350 3.41464 31 C C - < + 1.38629 1.38629 1.38629 1.38629 + 0.02134 4.55105 4.55105 1.46634 0.26236 1.53789 0.24186 + 29 1.58279 1.84789 0.88423 1.49610 32 g g - < + 1.38629 1.38629 1.38629 1.38629 + 0.02134 4.55105 4.55105 1.46634 0.26236 1.53789 0.24186 + 30 1.37833 1.42549 1.42576 1.31944 33 a a - < + 1.38629 1.38629 1.38629 1.38629 + 0.02134 4.55105 4.55105 1.46634 0.26236 1.53789 0.24186 + 31 1.34730 1.18613 1.78941 1.31827 34 c a - _ + 1.38629 1.38629 1.38629 1.38629 + 0.02134 4.55105 4.55105 1.46634 0.26236 1.53789 0.24186 + 32 1.15096 1.73416 1.70970 1.12025 35 u a - _ + 1.38629 1.38629 1.38629 1.38629 + 0.02134 4.55105 4.55105 1.46634 0.26236 1.53789 0.24186 + 33 1.03457 1.55937 1.67729 1.39646 36 a a - 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: + 1.38629 1.38629 1.38629 1.38629 + 0.02127 4.55442 4.55442 1.46634 0.26236 1.46674 0.26224 + 98 2.89573 2.91496 3.61522 0.14662 162 u U - : + 1.38629 1.38629 1.38629 1.38629 + 0.02127 4.55442 4.55442 1.46634 0.26236 1.46674 0.26224 + 99 3.44497 2.99775 3.96478 0.10622 163 u U - : + 1.38629 1.38629 1.38629 1.38629 + 0.05250 4.55442 3.20328 1.46634 0.26236 1.46674 0.26224 + 100 2.04565 2.36393 2.28801 0.39277 164 u U - : + 1.38629 1.38629 1.38629 1.38629 + 0.01103 4.51294 * 1.46634 0.26236 0.00000 * +//