',
+ '', _l( 'Less' ), '',
+ '
',
+ '', _l([ + 'Collections of datasets are permanent, ordered lists of datasets that can be passed to tools and ', + 'workflows in order to have analyses done on each member of the entire group. This interface allows ', + 'you to create a collection and re-order the final collection.' + ].join( '' )), '
', + '', _l([ + 'Once your collection is complete, enter a name and ', + 'click "Create list".' + ].join( '' )), '
' + ].join('')), + + /** shown in list when all elements are discarded */ + noElementsLeft : _.template([ + '', _l([ - 'Collections of datasets are permanent, ordered lists of datasets that can be passed to tools and ', - 'workflows in order to have analyses done on each member of the entire group. This interface allows ', - 'you to create a collection and re-order the final collection.' - ].join( '' )), '
', - '', _l([ - 'Once your collection is complete, enter a name and ', - 'click "Create list".' - ].join( '' )), '
' - ].join('')), - - /** shown in list when all elements are discarded */ - noElementsLeft : _.template([ - '', _l([ + 'Pair collections are permanent collections containing two datasets: one forward and one reverse. ', + 'Often these are forward and reverse reads. The pair collections can be passed to tools and ', + 'workflows in order to have analyses done on both datasets. This interface allows ', + 'you to create a pair, name it, and swap which is forward and which reverse.' + ].join( '' )), '
', + '', _l([ + 'Once your collection is complete, enter a name and ', + 'click "Create list".' + ].join( '' )), '
' + ].join('')) + }), + + // ------------------------------------------------------------------------ misc + /** string rep */ + toString : function(){ return 'PairCollectionCreator'; } +}); + + +//============================================================================== +/** List collection flavor of collectionCreatorModal. */ +var pairCollectionCreatorModal = function _pairCollectionCreatorModal( elements, options ){ + options = options || {}; + options.title = _l( 'Create a collection from a pair of datasets' ); + return LIST_CREATOR.collectionCreatorModal( elements, options, PairCollectionCreator ); +}; + + +//============================================================================== +/** Use a modal to create a pair collection, then add it to the given history contents. + * @returns {Deferred} resolved when the collection is added to the history. + */ +function createPairCollection( contents ){ + if( contents.length !== 2 ){ + errorModal( + 'When pairing datasets, select only two datasets: one forward and one reverse.', + 'Not a valid pair' + ); + return jQuery.Deferred().reject( 'invalid pair' ); } + var elements = contents.toJSON(), + promise = pairCollectionCreatorModal( elements, { + creationFn : function( elements, name ){ + elements = [ + { name: "forward", src: "hda", id: elements[0].id }, + { name: "reverse", src: "hda", id: elements[1].id } + ]; + return contents.createHDCA( elements, 'paired', name ); + } + }); + return promise; +} + +//============================================================================== return { - createPairHDCA : createPairHDCA + PairCollectionCreator : PairCollectionCreator, + pairCollectionCreatorModal : pairCollectionCreatorModal, + createPairCollection : createPairCollection, }; }); diff --git a/client/galaxy/scripts/mvc/history/history-panel-edit.js b/client/galaxy/scripts/mvc/history/history-panel-edit.js index 0c2fc4501fb..ee114437cbd 100644 --- a/client/galaxy/scripts/mvc/history/history-panel-edit.js +++ b/client/galaxy/scripts/mvc/history/history-panel-edit.js @@ -293,7 +293,7 @@ var HistoryPanelEdit = _super.extend( }, // TODO: Only show quick pair if two things selected. { html: _l( 'Build Dataset Pair' ), func: function() { - PAIR_COLLECTION_CREATOR.createPairHDCA( panel.getSelectedModels() ) + PAIR_COLLECTION_CREATOR.createPairCollection( panel.getSelectedModels() ) .done( function(){ panel.model.refresh() }); } }, diff --git a/static/maps/mvc/collection/list-collection-creator.js.map b/static/maps/mvc/collection/list-collection-creator.js.map index 371cd166a20..0d53d5a3160 100644 --- a/static/maps/mvc/collection/list-collection-creator.js.map +++ b/static/maps/mvc/collection/list-collection-creator.js.map @@ -1 +1 @@ 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.clear-selected":"clearSelectedElements","click .collection-elements":"clearSelectedElements","dragover .collection-elements":"_dragoverElements","drop .collection-elements":"_dropElements","collection-element.dragstart .collection-elements":"_elementDragstart","collection-element.dragend .collection-elements":"_elementDragend","change .collection-name":"_changeName","keydown .collection-name":"_nameCheckForEnter","click .cancel-create":function(){"function"==typeof this.oncancel&&this.oncancel.call(this)},"click .create-collection":"_clickCreate"},_clickMoreHelp:function(a){a.stopPropagation(),this.$(".main-help").addClass("expanded"),this.$(".more-help").hide()},_clickLessHelp:function(a){a.stopPropagation(),this.$(".main-help").removeClass("expanded"),this.$(".more-help").show()},_toggleHelp:function(a){a.stopPropagation(),this.$(".main-help").toggleClass("expanded"),this.$(".more-help").toggle()},_showAlert:function(a,b){b=b||"alert-danger",this.$(".main-help").hide(),this.$(".header .alert").attr("class","alert alert-dismissable").addClass(b).show().find(".alert-message").html(a)},_hideAlert:function(){this.$(".main-help").show(),this.$(".header .alert").hide()},reset:function(){this._instanceSetUp(),this._elementsSetUp(),this.render()},clearSelectedElements:function(){this.$(".collection-elements .collection-element").removeClass("selected"),this.$(".collection-elements-controls > .clear-selected").hide()},_dragoverElements:function(a){a.preventDefault();var b=this.$list();this._checkForAutoscroll(b,a.originalEvent.clientY);var c=this._getNearestElement(a.originalEvent.clientY);this.$(".element-drop-placeholder").remove();var d=$('');c.size()?c.before(d):b.append(d)},_checkForAutoscroll:function(a,b){var c=2,d=a.offset(),e=a.scrollTop(),f=b-d.top,g=d.top+a.outerHeight()-b;f>=0&&f
",f(["Collections of datasets are permanent, ordered lists of datasets that can be passed to tools and ","workflows in order to have analyses done on each member of the entire group. This interface allows ","you to create a collection and re-order the final collection."].join("")),"
","",f(['Once your collection is complete, enter a name and ','click "Create list".'].join("")),"
"].join("")),noElementsLeft:_.template(['"+JSON.stringify(c.responseJSON)+"":": "+d}b._showAlert(content,"alert-danger")},events:{"click .more-help":"_clickMoreHelp","click .less-help":"_clickLessHelp","click .main-help":"_toggleHelp","click .header .alert button":"_hideAlert","click .reset":"reset","click .clear-selected":"clearSelectedElements","click .collection-elements":"clearSelectedElements","dragover .collection-elements":"_dragoverElements","drop .collection-elements":"_dropElements","collection-element.dragstart .collection-elements":"_elementDragstart","collection-element.dragend .collection-elements":"_elementDragend","change .collection-name":"_changeName","keydown .collection-name":"_nameCheckForEnter","click .cancel-create":function(){"function"==typeof this.oncancel&&this.oncancel.call(this)},"click .create-collection":"_clickCreate"},_clickMoreHelp:function(a){a.stopPropagation(),this.$(".main-help").addClass("expanded"),this.$(".more-help").hide()},_clickLessHelp:function(a){a.stopPropagation(),this.$(".main-help").removeClass("expanded"),this.$(".more-help").show()},_toggleHelp:function(a){a.stopPropagation(),this.$(".main-help").toggleClass("expanded"),this.$(".more-help").toggle()},_showAlert:function(a,b){b=b||"alert-danger",this.$(".main-help").hide(),this.$(".header .alert").attr("class","alert alert-dismissable").addClass(b).show().find(".alert-message").html(a)},_hideAlert:function(){this.$(".main-help").show(),this.$(".header .alert").hide()},reset:function(){this._instanceSetUp(),this._elementsSetUp(),this.render()},clearSelectedElements:function(){this.$(".collection-elements .collection-element").removeClass("selected"),this.$(".collection-elements-controls > .clear-selected").hide()},_dragoverElements:function(a){a.preventDefault();var b=this.$list();this._checkForAutoscroll(b,a.originalEvent.clientY);var c=this._getNearestElement(a.originalEvent.clientY);this.$(".element-drop-placeholder").remove();var d=$('');c.size()?c.before(d):b.append(d)},_checkForAutoscroll:function(a,b){var c=2,d=a.offset(),e=a.scrollTop(),f=b-d.top,g=d.top+a.outerHeight()-b;f>=0&&f
",f(["Collections of datasets are permanent, ordered lists of datasets that can be passed to tools and ","workflows in order to have analyses done on each member of the entire group. This interface allows ","you to create a collection and re-order the final collection."].join("")),"
","",f(['Once your collection is complete, enter a name and ','click "Create list".'].join("")),"
"].join("")),noElementsLeft:_.template(['",e(["Pair collections are permanent collections containing two datasets: one forward and one reverse. ","Often these are forward and reverse reads. The pair collections can be passed to tools and ","workflows in order to have analyses done on both datasets. This interface allows ","you to create a pair, name it, and swap which is forward and which reverse."].join("")),"
","",e(['Once your collection is complete, enter a name and ','click "Create list".'].join("")),"
"].join(""))}),toString:function(){return"PairCollectionCreator"}}),j=function(b,c){return c=c||{},c.title=e("Create a collection from a pair of datasets"),a.collectionCreatorModal(b,c,i)};return{PairCollectionCreator:i,pairCollectionCreatorModal:j,createPairCollection:f}}); //# sourceMappingURL=../../../maps/mvc/collection/pair-collection-creator.js.map \ No newline at end of file diff --git a/static/scripts/mvc/history/history-panel-edit.js b/static/scripts/mvc/history/history-panel-edit.js index bd1a0ff948c..9b5211625d4 100644 --- a/static/scripts/mvc/history/history-panel-edit.js +++ b/static/scripts/mvc/history/history-panel-edit.js @@ -1,2 +1,2 @@ -define(["mvc/history/history-panel","mvc/history/history-contents","mvc/dataset/states","mvc/history/hda-model","mvc/history/hda-li-edit","mvc/history/hdca-li-edit","mvc/tags","mvc/annotations","mvc/collection/list-collection-creator","mvc/collection/pair-collection-creator","mvc/collection/list-of-pairs-collection-creator","ui/fa-icon-button","mvc/ui/popup-menu","utils/localization"],function(a,b,c,d,e,f,g,h,i,j,k,l,m,n){var o=a.HistoryPanel,p=o.extend({HDAViewClass:e.HDAListItemEdit,HDCAViewClass:f.HDCAListItemEdit,initialize:function(a){a=a||{},o.prototype.initialize.call(this,a),this.tagsEditor=null,this.annotationEditor=null,this.purgeAllowed=a.purgeAllowed||!1,this.annotationEditorShown=a.annotationEditorShown||!1,this.tagsEditorShown=a.tagsEditorShown||!1},_setUpListeners:function(){var a=this;o.prototype._setUpListeners.call(a),a.on("drop",function(b,c){a.dataDropped(c),a.dropTargetOff()}),a.on("view:attached view:removed",function(){a._renderCounts()},a)},_setUpCollectionListeners:function(){return o.prototype._setUpCollectionListeners.call(this),this.collection.on("change:deleted",this._handleHdaDeletionChange,this),this.collection.on("change:visible",this._handleHdaVisibleChange,this),this.collection.on("change:purged",function(){this.model.fetch()},this),this},_setUpModelListeners:function(){return o.prototype._setUpModelListeners.call(this),this.model.on("change:nice_size",this.updateHistoryDiskSize,this),this},_buildNewRender:function(){var a=o.prototype._buildNewRender.call(this);return this.model?(Galaxy&&Galaxy.currUser&&Galaxy.currUser.id&&Galaxy.currUser.id===this.model.get("user_id")&&(this._renderTags(a),this._renderAnnotation(a)),a):a},renderItems:function(a){var b=o.prototype.renderItems.call(this,a);return this._renderCounts(a),b},_renderCounts:function(a){function b(a,b){return['',b,""].join("")}a=a||this.$el;var c=this.collection.where({deleted:!0}),d=this.collection.where({visible:!1}),e=[];return this.views.length&&e.push([this.views.length,n("shown")].join(" ")),c.length&&e.push(this.showDeleted?b("toggle-deleted-link",n("hide deleted")):[c.length,b("toggle-deleted-link",n("deleted"))].join(" ")),d.length&&e.push(this.showHidden?b("toggle-hidden-link",n("hide hidden")):[d.length,b("toggle-hidden-link",n("hidden"))].join(" ")),a.find("> .controls .subtitle").html(e.join(", "))},_renderTags:function(a){var b=this;this.tagsEditor=new g.TagsEditor({model:this.model,el:a.find(".controls .tags-display"),onshowFirstTime:function(){this.render()},onshow:function(){b.toggleHDATagEditors(!0,b.fxSpeed)},onhide:function(){b.toggleHDATagEditors(!1,b.fxSpeed)},$activator:l({title:n("Edit history tags"),classes:"history-tag-btn",faIcon:"fa-tags"}).appendTo(a.find(".controls .actions"))})},_renderAnnotation:function(a){var b=this;this.annotationEditor=new h.AnnotationEditor({model:this.model,el:a.find(".controls .annotation-display"),onshowFirstTime:function(){this.render()},onshow:function(){b.toggleHDAAnnotationEditors(!0,b.fxSpeed)},onhide:function(){b.toggleHDAAnnotationEditors(!1,b.fxSpeed)},$activator:l({title:n("Edit history annotation"),classes:"history-annotate-btn",faIcon:"fa-comment"}).appendTo(a.find(".controls .actions"))})},_setUpBehaviors:function(a){if(a=a||this.$el,o.prototype._setUpBehaviors.call(this,a),this.model&&Galaxy.currUser&&!Galaxy.currUser.isAnonymous()&&Galaxy.currUser.id===this.model.get("user_id")){var b=this,c="> .controls .name";a.find(c).attr("title",n("Click to rename history")).tooltip({placement:"bottom"}).make_text_editable({on_finish:function(a){var d=b.model.get("name");a&&a!==d?(b.$el.find(c).text(a),b.model.save({name:a}).fail(function(){b.$el.find(c).text(b.model.previous("name"))})):b.$el.find(c).text(d)}})}},multiselectActions:function(){var a=this,b=[{html:n("Hide datasets"),func:function(){var b=d.HistoryDatasetAssociation.prototype.hide;a.getSelectedModels().ajaxQueue(b)}},{html:n("Unhide datasets"),func:function(){var b=d.HistoryDatasetAssociation.prototype.unhide;a.getSelectedModels().ajaxQueue(b)}},{html:n("Delete datasets"),func:function(){var b=d.HistoryDatasetAssociation.prototype.delete;a.getSelectedModels().ajaxQueue(b)}},{html:n("Undelete datasets"),func:function(){var b=d.HistoryDatasetAssociation.prototype.undelete;a.getSelectedModels().ajaxQueue(b)}}];return a.purgeAllowed&&b.push({html:n("Permanently delete datasets"),func:function(){if(confirm(n("This will permanently remove the data in your datasets. Are you sure?"))){var b=d.HistoryDatasetAssociation.prototype.purge;a.getSelectedModels().ajaxQueue(b)}}}),b=b.concat(a._collectionActions())},_collectionActions:function(){var a=this;return[{html:n("Build Dataset List"),func:function(){i.createListCollection(a.getSelectedModels()).done(function(){a.model.refresh()})}},{html:n("Build Dataset Pair"),func:function(){j.createPairHDCA(a.getSelectedModels()).done(function(){a.model.refresh()})}},{html:n("Build List of Dataset Pairs"),func:function(){k.createListOfPairsCollection(a.getSelectedModels()).done(function(){a.model.refresh()})}}]},_attachItems:function(a){return this.$list(a).append(this.views.reverse().map(function(a){return a.$el})),this},_attachView:function(a){var b=this;b.views.unshift(a),b.$list().prepend(a.render(0).$el.hide()),b.trigger("view:attached",a),a.$el.slideDown(b.fxSpeed,function(){b.trigger("view:attached:rendered")})},_getItemViewOptions:function(a){var b=o.prototype._getItemViewOptions.call(this,a);return _.extend(b,{purgeAllowed:this.purgeAllowed,tagsEditorShown:this.tagsEditor&&!this.tagsEditor.hidden,annotationEditorShown:this.annotationEditor&&!this.annotationEditor.hidden}),b},_handleHdaDeletionChange:function(a){a.get("deleted")&&!this.showDeleted&&this.removeItemView(a),this._renderCounts()},_handleHdaVisibleChange:function(a){a.hidden()&&!this.showHidden&&this.removeItemView(a),this._renderCounts()},toggleHDATagEditors:function(){var a=Array.prototype.slice.call(arguments,1);_.each(this.views,function(b){b.tagsEditor&&b.tagsEditor.toggle.apply(b.tagsEditor,a)})},toggleHDAAnnotationEditors:function(){var a=Array.prototype.slice.call(arguments,1);_.each(this.views,function(b){b.annotationEditor&&b.annotationEditor.toggle.apply(b.annotationEditor,a)})},events:_.extend(_.clone(o.prototype.events),{"click .show-selectors-btn":"toggleSelectors","click .toggle-deleted-link":function(){this.toggleShowDeleted()},"click .toggle-hidden-link":function(){this.toggleShowHidden()}}),updateHistoryDiskSize:function(){this.$el.find(".history-size").text(this.model.get("nice_size"))},dropTargetOn:function(){if(this.dropTarget)return this;this.dropTarget=!0;var a={dragenter:_.bind(this.dragenter,this),dragover:_.bind(this.dragover,this),dragleave:_.bind(this.dragleave,this),drop:_.bind(this.drop,this)},b=this._renderDropTarget();this.$list().before([this._renderDropTargetHelp(),b]);for(var c in a)a.hasOwnProperty(c)&&b.on(c,a[c]);return this},_renderDropTarget:function(){return this.$(".history-drop-target").remove(),$("").addClass("history-drop-target").css({height:"64px",margin:"0px 10px 10px 10px",border:"1px dashed black","border-radius":"3px"})},_renderDropTargetHelp:function(){return this.$(".history-drop-target-help").remove(),$("").addClass("history-drop-target-help").css({margin:"10px 10px 4px 10px",color:"grey","font-size":"80%","font-style":"italic"}).text(n("Drag datasets here to copy them to the current history"))},dropTargetOff:function(){if(!this.dropTarget)return this;this.dropTarget=!1;var a=this.$(".history-drop-target").get(0);for(var b in this._dropHandlers)this._dropHandlers.hasOwnProperty(b)&&(console.debug(b,this._dropHandlers[b]),a.off(b,this._dropHandlers[b]));return this.$(".history-drop-target").remove(),this.$(".history-drop-target-help").remove(),this},dropTargetToggle:function(){return this.dropTarget?this.dropTargetOff():this.dropTargetOn(),this},dragenter:function(a){a.preventDefault(),a.stopPropagation(),this.$(".history-drop-target").css("border","2px solid black")},dragover:function(a){a.preventDefault(),a.stopPropagation()},dragleave:function(a){a.preventDefault(),a.stopPropagation(),this.$(".history-drop-target").css("border","1px dashed black")},drop:function(a){a.preventDefault(),a.dataTransfer.dropEffect="move";var b=this,c=a.dataTransfer.getData("text");try{c=JSON.parse(c)}catch(d){this.warn("error parsing JSON from drop:",c)}return this.trigger("droptarget:drop",a,c,b),!1},dataDropped:function(a){var b=this;return _.isObject(a)&&"HistoryDatasetAssociation"===a.model_class&&a.id?b.model.contents.copy(a.id):jQuery.when()},toString:function(){return"HistoryPanelEdit("+(this.model?this.model.get("name"):"")+")"}});return{HistoryPanelEdit:p}}); +define(["mvc/history/history-panel","mvc/history/history-contents","mvc/dataset/states","mvc/history/hda-model","mvc/history/hda-li-edit","mvc/history/hdca-li-edit","mvc/tags","mvc/annotations","mvc/collection/list-collection-creator","mvc/collection/pair-collection-creator","mvc/collection/list-of-pairs-collection-creator","ui/fa-icon-button","mvc/ui/popup-menu","utils/localization"],function(a,b,c,d,e,f,g,h,i,j,k,l,m,n){var o=a.HistoryPanel,p=o.extend({HDAViewClass:e.HDAListItemEdit,HDCAViewClass:f.HDCAListItemEdit,initialize:function(a){a=a||{},o.prototype.initialize.call(this,a),this.tagsEditor=null,this.annotationEditor=null,this.purgeAllowed=a.purgeAllowed||!1,this.annotationEditorShown=a.annotationEditorShown||!1,this.tagsEditorShown=a.tagsEditorShown||!1},_setUpListeners:function(){var a=this;o.prototype._setUpListeners.call(a),a.on("drop",function(b,c){a.dataDropped(c),a.dropTargetOff()}),a.on("view:attached view:removed",function(){a._renderCounts()},a)},_setUpCollectionListeners:function(){return o.prototype._setUpCollectionListeners.call(this),this.collection.on("change:deleted",this._handleHdaDeletionChange,this),this.collection.on("change:visible",this._handleHdaVisibleChange,this),this.collection.on("change:purged",function(){this.model.fetch()},this),this},_setUpModelListeners:function(){return o.prototype._setUpModelListeners.call(this),this.model.on("change:nice_size",this.updateHistoryDiskSize,this),this},_buildNewRender:function(){var a=o.prototype._buildNewRender.call(this);return this.model?(Galaxy&&Galaxy.currUser&&Galaxy.currUser.id&&Galaxy.currUser.id===this.model.get("user_id")&&(this._renderTags(a),this._renderAnnotation(a)),a):a},renderItems:function(a){var b=o.prototype.renderItems.call(this,a);return this._renderCounts(a),b},_renderCounts:function(a){function b(a,b){return['',b,""].join("")}a=a||this.$el;var c=this.collection.where({deleted:!0}),d=this.collection.where({visible:!1}),e=[];return this.views.length&&e.push([this.views.length,n("shown")].join(" ")),c.length&&e.push(this.showDeleted?b("toggle-deleted-link",n("hide deleted")):[c.length,b("toggle-deleted-link",n("deleted"))].join(" ")),d.length&&e.push(this.showHidden?b("toggle-hidden-link",n("hide hidden")):[d.length,b("toggle-hidden-link",n("hidden"))].join(" ")),a.find("> .controls .subtitle").html(e.join(", "))},_renderTags:function(a){var b=this;this.tagsEditor=new g.TagsEditor({model:this.model,el:a.find(".controls .tags-display"),onshowFirstTime:function(){this.render()},onshow:function(){b.toggleHDATagEditors(!0,b.fxSpeed)},onhide:function(){b.toggleHDATagEditors(!1,b.fxSpeed)},$activator:l({title:n("Edit history tags"),classes:"history-tag-btn",faIcon:"fa-tags"}).appendTo(a.find(".controls .actions"))})},_renderAnnotation:function(a){var b=this;this.annotationEditor=new h.AnnotationEditor({model:this.model,el:a.find(".controls .annotation-display"),onshowFirstTime:function(){this.render()},onshow:function(){b.toggleHDAAnnotationEditors(!0,b.fxSpeed)},onhide:function(){b.toggleHDAAnnotationEditors(!1,b.fxSpeed)},$activator:l({title:n("Edit history annotation"),classes:"history-annotate-btn",faIcon:"fa-comment"}).appendTo(a.find(".controls .actions"))})},_setUpBehaviors:function(a){if(a=a||this.$el,o.prototype._setUpBehaviors.call(this,a),this.model&&Galaxy.currUser&&!Galaxy.currUser.isAnonymous()&&Galaxy.currUser.id===this.model.get("user_id")){var b=this,c="> .controls .name";a.find(c).attr("title",n("Click to rename history")).tooltip({placement:"bottom"}).make_text_editable({on_finish:function(a){var d=b.model.get("name");a&&a!==d?(b.$el.find(c).text(a),b.model.save({name:a}).fail(function(){b.$el.find(c).text(b.model.previous("name"))})):b.$el.find(c).text(d)}})}},multiselectActions:function(){var a=this,b=[{html:n("Hide datasets"),func:function(){var b=d.HistoryDatasetAssociation.prototype.hide;a.getSelectedModels().ajaxQueue(b)}},{html:n("Unhide datasets"),func:function(){var b=d.HistoryDatasetAssociation.prototype.unhide;a.getSelectedModels().ajaxQueue(b)}},{html:n("Delete datasets"),func:function(){var b=d.HistoryDatasetAssociation.prototype.delete;a.getSelectedModels().ajaxQueue(b)}},{html:n("Undelete datasets"),func:function(){var b=d.HistoryDatasetAssociation.prototype.undelete;a.getSelectedModels().ajaxQueue(b)}}];return a.purgeAllowed&&b.push({html:n("Permanently delete datasets"),func:function(){if(confirm(n("This will permanently remove the data in your datasets. Are you sure?"))){var b=d.HistoryDatasetAssociation.prototype.purge;a.getSelectedModels().ajaxQueue(b)}}}),b=b.concat(a._collectionActions())},_collectionActions:function(){var a=this;return[{html:n("Build Dataset List"),func:function(){i.createListCollection(a.getSelectedModels()).done(function(){a.model.refresh()})}},{html:n("Build Dataset Pair"),func:function(){j.createPairCollection(a.getSelectedModels()).done(function(){a.model.refresh()})}},{html:n("Build List of Dataset Pairs"),func:function(){k.createListOfPairsCollection(a.getSelectedModels()).done(function(){a.model.refresh()})}}]},_attachItems:function(a){return this.$list(a).append(this.views.reverse().map(function(a){return a.$el})),this},_attachView:function(a){var b=this;b.views.unshift(a),b.$list().prepend(a.render(0).$el.hide()),b.trigger("view:attached",a),a.$el.slideDown(b.fxSpeed,function(){b.trigger("view:attached:rendered")})},_getItemViewOptions:function(a){var b=o.prototype._getItemViewOptions.call(this,a);return _.extend(b,{purgeAllowed:this.purgeAllowed,tagsEditorShown:this.tagsEditor&&!this.tagsEditor.hidden,annotationEditorShown:this.annotationEditor&&!this.annotationEditor.hidden}),b},_handleHdaDeletionChange:function(a){a.get("deleted")&&!this.showDeleted&&this.removeItemView(a),this._renderCounts()},_handleHdaVisibleChange:function(a){a.hidden()&&!this.showHidden&&this.removeItemView(a),this._renderCounts()},toggleHDATagEditors:function(){var a=Array.prototype.slice.call(arguments,1);_.each(this.views,function(b){b.tagsEditor&&b.tagsEditor.toggle.apply(b.tagsEditor,a)})},toggleHDAAnnotationEditors:function(){var a=Array.prototype.slice.call(arguments,1);_.each(this.views,function(b){b.annotationEditor&&b.annotationEditor.toggle.apply(b.annotationEditor,a)})},events:_.extend(_.clone(o.prototype.events),{"click .show-selectors-btn":"toggleSelectors","click .toggle-deleted-link":function(){this.toggleShowDeleted()},"click .toggle-hidden-link":function(){this.toggleShowHidden()}}),updateHistoryDiskSize:function(){this.$el.find(".history-size").text(this.model.get("nice_size"))},dropTargetOn:function(){if(this.dropTarget)return this;this.dropTarget=!0;var a={dragenter:_.bind(this.dragenter,this),dragover:_.bind(this.dragover,this),dragleave:_.bind(this.dragleave,this),drop:_.bind(this.drop,this)},b=this._renderDropTarget();this.$list().before([this._renderDropTargetHelp(),b]);for(var c in a)a.hasOwnProperty(c)&&b.on(c,a[c]);return this},_renderDropTarget:function(){return this.$(".history-drop-target").remove(),$("").addClass("history-drop-target").css({height:"64px",margin:"0px 10px 10px 10px",border:"1px dashed black","border-radius":"3px"})},_renderDropTargetHelp:function(){return this.$(".history-drop-target-help").remove(),$("").addClass("history-drop-target-help").css({margin:"10px 10px 4px 10px",color:"grey","font-size":"80%","font-style":"italic"}).text(n("Drag datasets here to copy them to the current history"))},dropTargetOff:function(){if(!this.dropTarget)return this;this.dropTarget=!1;var a=this.$(".history-drop-target").get(0);for(var b in this._dropHandlers)this._dropHandlers.hasOwnProperty(b)&&(console.debug(b,this._dropHandlers[b]),a.off(b,this._dropHandlers[b]));return this.$(".history-drop-target").remove(),this.$(".history-drop-target-help").remove(),this},dropTargetToggle:function(){return this.dropTarget?this.dropTargetOff():this.dropTargetOn(),this},dragenter:function(a){a.preventDefault(),a.stopPropagation(),this.$(".history-drop-target").css("border","2px solid black")},dragover:function(a){a.preventDefault(),a.stopPropagation()},dragleave:function(a){a.preventDefault(),a.stopPropagation(),this.$(".history-drop-target").css("border","1px dashed black")},drop:function(a){a.preventDefault(),a.dataTransfer.dropEffect="move";var b=this,c=a.dataTransfer.getData("text");try{c=JSON.parse(c)}catch(d){this.warn("error parsing JSON from drop:",c)}return this.trigger("droptarget:drop",a,c,b),!1},dataDropped:function(a){var b=this;return _.isObject(a)&&"HistoryDatasetAssociation"===a.model_class&&a.id?b.model.contents.copy(a.id):jQuery.when()},toString:function(){return"HistoryPanelEdit("+(this.model?this.model.get("name"):"")+")"}});return{HistoryPanelEdit:p}}); //# sourceMappingURL=../../../maps/mvc/history/history-panel-edit.js.map \ No newline at end of file diff --git a/static/style/blue/base.css b/static/style/blue/base.css index 26b3bf52132..4c9a040d5e9 100644 --- a/static/style/blue/base.css +++ b/static/style/blue/base.css @@ -2277,6 +2277,16 @@ pre.peek table,pre.peek th,pre.peek tr,pre.peek td{font-family:Monaco,Menlo,Cons .collection-creator.list-collection-creator .element-drop-placeholder{width:60px;height:3px;margin:2px 0px 0px 6px;background:black}.collection-creator.list-collection-creator .element-drop-placeholder:before{float:left;font-size:120%;margin:-9px 0 0 -6px;font-family:FontAwesome;content:'\f0da'} .collection-creator.list-collection-creator .element-drop-placeholder:last-child{margin-bottom:4px} .collection-creator.list-collection-creator .empty-message{margin:8px;color:grey;font-style:italic;text-align:center} +.collection-creator.pair-collection-creator .footer{margin-top:8px} +.collection-creator.pair-collection-creator .main-help{cursor:pointer} +.collection-creator.pair-collection-creator .collection-elements-controls{margin-bottom:8px}.collection-creator.pair-collection-creator .collection-elements-controls .clear-selected{float:right !important;float:right;display:none} +.collection-creator.pair-collection-creator .collection-elements{max-height:400px;overflow-y:auto;overflow-x:hidden} +.collection-creator.pair-collection-creator .collection-element{height:32px;margin:2px 4px 0px 4px;opacity:1.0;border:1px solid lightgrey;border-radius:3px;padding:0 8px 0 8px;line-height:28px;cursor:pointer;overflow:hidden}.collection-creator.pair-collection-creator .collection-element:last-of-type{margin-bottom:2px} +.collection-creator.pair-collection-creator .collection-element:hover{border-color:black} +.collection-creator.pair-collection-creator .collection-element button{margin-top:3px} +.collection-creator.pair-collection-creator .collection-element .identifier:after{content:':';margin-right:6px} +.collection-creator.pair-collection-creator .collection-element .name:hover{text-decoration:auto} +.collection-creator.pair-collection-creator .empty-message{margin:8px;color:grey;font-style:italic;text-align:center} .collection-creator.list-of-pairs-collection-creator .column-headers{margin-bottom:8px} .search-input .search-query{width:100%;padding-right:24px} .search-input .search-clear,.search-input .search-loading{position:relative;display:inline-block;float:right;margin-top:-24px;margin-right:4px;font-size:1.4em;line-height:23px;color:grey} diff --git a/static/style/src/less/ui/paired-collection-creator.less b/static/style/src/less/ui/paired-collection-creator.less index 8f296f505bb..225de49313a 100644 --- a/static/style/src/less/ui/paired-collection-creator.less +++ b/static/style/src/less/ui/paired-collection-creator.less @@ -534,6 +534,68 @@ // ======================================================================== pair .collection-creator.pair-collection-creator { + .footer { + margin-top: 8px; + } + + .main-help { + cursor: pointer; + } + + .collection-elements-controls { + margin-bottom: 8px; + + .clear-selected { + .pull-right; + display: none; + } + } + .collection-elements { + max-height: 400px; + overflow-y: auto; + overflow-x: hidden; + } + + // TODO: taken from .dataset above - swap these out + .collection-element { + height: 32px; + margin: 2px 4px 0px 4px; + opacity: 1.0; + border: 1px solid lightgrey; + border-radius: 3px; + padding: 0 8px 0 8px; + line-height: 28px; + cursor: pointer; + overflow: hidden; + + &:last-of-type { + margin-bottom: 2px; + } + &:hover { + border-color: black; + } + + button { + margin-top: 3px; + } + .identifier { + &:after { + content: ':'; + margin-right: 6px; + } + } + .name { + &:hover { + text-decoration: none; + } + } + } + .empty-message { + margin: 8px; + color: grey; + font-style: italic; + text-align: center; + } } // ======================================================================== list of pairs diff --git a/templates/webapps/galaxy/root/history.mako b/templates/webapps/galaxy/root/history.mako index e6d03795360..a59133671f3 100644 --- a/templates/webapps/galaxy/root/history.mako +++ b/templates/webapps/galaxy/root/history.mako @@ -51,17 +51,21 @@ $(function(){ define( 'app', function(){ require([ 'mvc/history/history-contents', - 'mvc/collection/list-collection-creator' - ], function( HISTORY_CONTENTS, LCC ){ + // 'mvc/collection/list-collection-creator' + 'mvc/collection/pair-collection-creator' + // ], function( HISTORY_CONTENTS, LCC ){ + ], function( HISTORY_CONTENTS, PCC ){ $(function(){ var hdas = bootstrapped.hdas.filter( function( hda ){ - return !( hda.deleted || hda.purged ); + return ( hda.state === 'ok' ) + && !( hda.deleted || hda.purged ); }); + hdas = hdas.slice( 0, 2 ) console.debug( hdas ); var collection = new HISTORY_CONTENTS.HistoryContents( hdas, { historyId : bootstrapped.history.id }) // LCC.listCollectionCreatorModal( hdas ) - LCC.createListCollection( collection ) + PCC.createPairCollection( collection ) .done( function( response ){ console.info( 'creation succeeded:', arguments ); })