From cca180264e3937cde3eb14861eb436d930981b99 Mon Sep 17 00:00:00 2001 From: mvdbeek Date: Tue, 18 Nov 2025 16:02:15 +0100 Subject: [PATCH 1/2] Create version 25.0.4 --- client/package.json | 2 +- lib/galaxy/version.py | 2 +- package.json | 2 +- packages/app/HISTORY.rst | 26 +++++++++++-- packages/app/setup.cfg | 2 +- packages/auth/HISTORY.rst | 8 ++-- packages/auth/setup.cfg | 2 +- packages/config/HISTORY.rst | 29 ++++++++++++-- packages/config/setup.cfg | 2 +- packages/data/HISTORY.rst | 25 ++++++++++-- packages/data/setup.cfg | 2 +- packages/files/HISTORY.rst | 8 ++-- packages/files/setup.cfg | 2 +- packages/job_execution/HISTORY.rst | 8 ++-- packages/job_execution/setup.cfg | 2 +- packages/job_metrics/HISTORY.rst | 8 ++-- packages/job_metrics/setup.cfg | 2 +- packages/meta/HISTORY.rst | 56 +++++++++++++++++++++++++-- packages/meta/setup.cfg | 2 +- packages/navigation/HISTORY.rst | 8 ++-- packages/navigation/setup.cfg | 2 +- packages/objectstore/HISTORY.rst | 8 ++-- packages/objectstore/setup.cfg | 2 +- packages/schema/HISTORY.rst | 8 ++-- packages/schema/setup.cfg | 2 +- packages/selenium/HISTORY.rst | 8 ++-- packages/selenium/setup.cfg | 2 +- packages/test_api/HISTORY.rst | 28 ++++++++++++-- packages/test_api/setup.cfg | 2 +- packages/test_base/HISTORY.rst | 11 ++++-- packages/test_base/setup.cfg | 2 +- packages/test_driver/HISTORY.rst | 8 ++-- packages/test_driver/setup.cfg | 2 +- packages/tool_shed/HISTORY.rst | 8 ++-- packages/tool_shed/setup.cfg | 2 +- packages/tool_shed_schema/HISTORY.rst | 8 ++-- packages/tool_shed_schema/setup.cfg | 2 +- packages/tool_util/HISTORY.rst | 13 +++++-- packages/tool_util/setup.cfg | 2 +- packages/tool_util_models/HISTORY.rst | 8 ++-- packages/tool_util_models/setup.cfg | 2 +- packages/tours/HISTORY.rst | 8 ++-- packages/tours/setup.cfg | 2 +- packages/util/HISTORY.rst | 8 ++-- packages/util/setup.cfg | 2 +- packages/web_apps/HISTORY.rst | 24 ++++++++++-- packages/web_apps/setup.cfg | 2 +- packages/web_client/HISTORY.rst | 8 ++-- packages/web_client/setup.cfg | 2 +- packages/web_framework/HISTORY.rst | 8 ++-- packages/web_framework/setup.cfg | 2 +- packages/web_stack/HISTORY.rst | 8 ++-- packages/web_stack/setup.cfg | 2 +- 53 files changed, 284 insertions(+), 120 deletions(-) diff --git a/client/package.json b/client/package.json index 8151ea6a3f2..2e1b32fe298 100644 --- a/client/package.json +++ b/client/package.json @@ -1,6 +1,6 @@ { "name": "@galaxyproject/galaxy-client", - "version": "25.0.4.dev0", + "version": "25.0.4", "description": "Galaxy client application build system", "keywords": [ "galaxy" diff --git a/lib/galaxy/version.py b/lib/galaxy/version.py index d029404ab23..c21baa048e0 100644 --- a/lib/galaxy/version.py +++ b/lib/galaxy/version.py @@ -1,3 +1,3 @@ VERSION_MAJOR = "25.0" -VERSION_MINOR = "4.dev0" +VERSION_MINOR = "4" VERSION = VERSION_MAJOR + (f".{VERSION_MINOR}" if VERSION_MINOR else "") diff --git a/package.json b/package.json index 9e54ececaac..93f800fdf70 100644 --- a/package.json +++ b/package.json @@ -1,6 +1,6 @@ { "name": "@galaxyproject/galaxy", - "version": "25.0.3", + "version": "25.0.4", "description": ".. figure:: https://galaxyproject.org/images/galaxy-logos/galaxy_project_logo.jpg :alt: Galaxy Logo", "main": "index.js", "scripts": { diff --git a/packages/app/HISTORY.rst b/packages/app/HISTORY.rst index f20e5ced42e..03d14708c7b 100644 --- a/packages/app/HISTORY.rst +++ b/packages/app/HISTORY.rst @@ -3,11 +3,31 @@ History .. to_doc ------------ -25.0.4.dev0 ------------ +------------------- +25.0.4 (2025-11-18) +------------------- +========= +Bug fixes +========= + +* Check for expiration in refresh token dictionary by `@jdavcs `_ in `#20954 `_ +* Deactivate user file source on unknown error by `@mvdbeek `_ in `#20962 `_ +* Don't create workflow outputs to recover input parameter outputs by `@mvdbeek `_ in `#20980 `_ +* Fix PUT /api/workflows for user defined tools by `@mvdbeek `_ in `#20987 `_ +* Store pulsar job prep error messages by `@mvdbeek `_ in `#21013 `_ +* Require OK datasets for filtering empty datasets by `@bernt-matthias `_ in `#21023 `_ +* Fix `InvalidRequestError` when saving workflow step with dynamic tool by `@mvdbeek `_ in `#21056 `_ +* Run landing request state through validator by `@mvdbeek `_ in `#21087 `_ +* Create new datasets when creating skipped database operation tool outputs by `@mvdbeek `_ in `#21142 `_ +* Fix refresh token expiration retrieval logic by `@nuwang `_ in `#21213 `_ + +============ +Enhancements +============ + +* Use job cache also for implicit conversions by `@mvdbeek `_ in `#21021 `_ ------------------- 25.0.3 (2025-09-23) diff --git a/packages/app/setup.cfg b/packages/app/setup.cfg index ae92e91abb9..ae71384289d 100644 --- a/packages/app/setup.cfg +++ b/packages/app/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-app url = https://github.com/galaxyproject/galaxy -version = 25.0.4.dev0 +version = 25.0.4 [options] include_package_data = True diff --git a/packages/auth/HISTORY.rst b/packages/auth/HISTORY.rst index d8aef734774..db3f08ff2d0 100644 --- a/packages/auth/HISTORY.rst +++ b/packages/auth/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -25.0.4.dev0 ------------ - +------------------- +25.0.4 (2025-11-18) +------------------- +No recorded changes since last release ------------------- 25.0.3 (2025-09-23) diff --git a/packages/auth/setup.cfg b/packages/auth/setup.cfg index c97ea8638e0..ad5c355b8ad 100644 --- a/packages/auth/setup.cfg +++ b/packages/auth/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-auth url = https://github.com/galaxyproject/galaxy -version = 25.0.4.dev0 +version = 25.0.4 [options] include_package_data = True diff --git a/packages/config/HISTORY.rst b/packages/config/HISTORY.rst index 0de1a716b6d..b4c9b7c09ab 100644 --- a/packages/config/HISTORY.rst +++ b/packages/config/HISTORY.rst @@ -3,11 +3,34 @@ History .. to_doc ------------ -25.0.4.dev0 ------------ +------------------- +25.0.4 (2025-11-18) +------------------- +========= +Bug fixes +========= + +* Add safetensors datatype by `@nilchia `_ in `#20754 `_ +* Fix MIME type for LAZ datatype by `@kysrpex `_ in `#21202 `_ + +============ +Enhancements +============ + +* Add Auspice JSON datatype by `@pvanheus `_ in `#20466 `_ +* Add SpatialData datatype by `@nilchia `_ in `#21000 `_ +* Add LAS and LAZ file format by `@bgruening `_ in `#21049 `_ +* New datatype addition: gam for vg toolkit by `@SaimMomin12 `_ in `#21096 `_ +* support ZARR v3 for Spatialdata dt by `@nilchia `_ in `#21265 `_ + +============= +Other changes +============= + +* New datatype addition: beast.trees datatype by `@SaimMomin12 `_ in `#21055 `_ +* Add display_in_upload to LAZ and LAS by `@bgruening `_ in `#21060 `_ ------------------- 25.0.3 (2025-09-23) diff --git a/packages/config/setup.cfg b/packages/config/setup.cfg index fac2423ad28..cf7497b22a9 100644 --- a/packages/config/setup.cfg +++ b/packages/config/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-config url = https://github.com/galaxyproject/galaxy -version = 25.0.4.dev0 +version = 25.0.4 [options] include_package_data = True diff --git a/packages/data/HISTORY.rst b/packages/data/HISTORY.rst index c64a17db382..e62c80dcde6 100644 --- a/packages/data/HISTORY.rst +++ b/packages/data/HISTORY.rst @@ -3,11 +3,30 @@ History .. to_doc ------------ -25.0.4.dev0 ------------ +------------------- +25.0.4 (2025-11-18) +------------------- +========= +Bug fixes +========= + +* Add safetensors datatype by `@nilchia `_ in `#20754 `_ +* Skip sam metadata if we have too many references by `@mvdbeek `_ in `#20820 `_ +* Backport of #20984 by `@davelopez `_ in `#20994 `_ +* Backport fix anndata datatype update by `@nilchia `_ in `#21111 `_ +* Create new datasets when creating skipped database operation tool outputs by `@mvdbeek `_ in `#21142 `_ +* Fix optional param unset in RO-Crate export by `@davelopez `_ in `#21192 `_ + +============ +Enhancements +============ + +* Add Auspice JSON datatype by `@pvanheus `_ in `#20466 `_ +* Add SpatialData datatype by `@nilchia `_ in `#21000 `_ +* Use job cache also for implicit conversions by `@mvdbeek `_ in `#21021 `_ +* support ZARR v3 for Spatialdata dt by `@nilchia `_ in `#21265 `_ ------------------- 25.0.3 (2025-09-23) diff --git a/packages/data/setup.cfg b/packages/data/setup.cfg index 6e712e7588f..fe694c834e6 100644 --- a/packages/data/setup.cfg +++ b/packages/data/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-data url = https://github.com/galaxyproject/galaxy -version = 25.0.4.dev0 +version = 25.0.4 [options] include_package_data = True diff --git a/packages/files/HISTORY.rst b/packages/files/HISTORY.rst index 95b33d3670b..7944338d188 100644 --- a/packages/files/HISTORY.rst +++ b/packages/files/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -25.0.4.dev0 ------------ - +------------------- +25.0.4 (2025-11-18) +------------------- +No recorded changes since last release ------------------- 25.0.3 (2025-09-23) diff --git a/packages/files/setup.cfg b/packages/files/setup.cfg index b3c0244d0c5..9ad204bea61 100644 --- a/packages/files/setup.cfg +++ b/packages/files/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-files url = https://github.com/galaxyproject/galaxy -version = 25.0.4.dev0 +version = 25.0.4 [options] include_package_data = True diff --git a/packages/job_execution/HISTORY.rst b/packages/job_execution/HISTORY.rst index 4df7197bfff..c39c2303d66 100644 --- a/packages/job_execution/HISTORY.rst +++ b/packages/job_execution/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -25.0.4.dev0 ------------ - +------------------- +25.0.4 (2025-11-18) +------------------- +No recorded changes since last release ------------------- 25.0.3 (2025-09-23) diff --git a/packages/job_execution/setup.cfg b/packages/job_execution/setup.cfg index 928bea1f12f..7c9bfb9a552 100644 --- a/packages/job_execution/setup.cfg +++ b/packages/job_execution/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-job-execution url = https://github.com/galaxyproject/galaxy -version = 25.0.4.dev0 +version = 25.0.4 [options] include_package_data = True diff --git a/packages/job_metrics/HISTORY.rst b/packages/job_metrics/HISTORY.rst index f8a8a50365e..fc34f13b1dc 100644 --- a/packages/job_metrics/HISTORY.rst +++ b/packages/job_metrics/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -25.0.4.dev0 ------------ - +------------------- +25.0.4 (2025-11-18) +------------------- +No recorded changes since last release ------------------- 25.0.3 (2025-09-23) diff --git a/packages/job_metrics/setup.cfg b/packages/job_metrics/setup.cfg index ba7244ec694..741ca0a7ac5 100644 --- a/packages/job_metrics/setup.cfg +++ b/packages/job_metrics/setup.cfg @@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-job-metrics url = https://github.com/galaxyproject/galaxy -version = 25.0.4.dev0 +version = 25.0.4 [options] include_package_data = True diff --git a/packages/meta/HISTORY.rst b/packages/meta/HISTORY.rst index 9e86b845b10..74958866813 100644 --- a/packages/meta/HISTORY.rst +++ b/packages/meta/HISTORY.rst @@ -3,11 +3,61 @@ History .. to_doc ------------ -25.0.4.dev0 ------------ +------------------- +25.0.4 (2025-11-18) +------------------- +========= +Bug fixes +========= + +* Add safetensors datatype by `@nilchia `_ in `#20754 `_ +* Skip sam metadata if we have too many references by `@mvdbeek `_ in `#20820 `_ +* Fix select field cut off in dataset view by `@ahmedhamidawan `_ in `#20947 `_ +* Check for expiration in refresh token dictionary by `@jdavcs `_ in `#20954 `_ +* Deactivate user file source on unknown error by `@mvdbeek `_ in `#20962 `_ +* Don't create workflow outputs to recover input parameter outputs by `@mvdbeek `_ in `#20980 `_ +* Fix ``test_multiple_decorators`` unit test for FastAPI 0.118.0 by `@nsoranzo `_ in `#20982 `_ +* Fix PUT /api/workflows for user defined tools by `@mvdbeek `_ in `#20987 `_ +* Backport of #20984 by `@davelopez `_ in `#20994 `_ +* Improves zip file type detection for uploads under windows by `@caroott `_ in `#20999 `_ +* Store pulsar job prep error messages by `@mvdbeek `_ in `#21013 `_ +* Require OK datasets for filtering empty datasets by `@bernt-matthias `_ in `#21023 `_ +* Fix `InvalidRequestError` when saving workflow step with dynamic tool by `@mvdbeek `_ in `#21056 `_ +* Fix has_size assertion by `@bernt-matthias `_ in `#21081 `_ +* Run landing request state through validator by `@mvdbeek `_ in `#21087 `_ +* Fix workflow run form input restrictions by `@mvdbeek `_ in `#21095 `_ +* Backport fix anndata datatype update by `@nilchia `_ in `#21111 `_ +* Prefix download link by `@martenson `_ in `#21112 `_ +* Create new datasets when creating skipped database operation tool outputs by `@mvdbeek `_ in `#21142 `_ +* Fix workflow landing rendering if public query param not provided by `@mvdbeek `_ in `#21165 `_ +* Fix optional param unset in RO-Crate export by `@davelopez `_ in `#21192 `_ +* Fix MIME type for LAZ datatype by `@kysrpex `_ in `#21202 `_ +* Fix refresh token expiration retrieval logic by `@nuwang `_ in `#21213 `_ +* Fix direct tool execution not using the latest version by `@jmchilton `_ in `#21240 `_ +* Fix proxy url validation for non-printable characters by `@davelopez `_ in `#21280 `_ +* Swap to NPM trusted publishing for prebuilt client by `@dannon `_ in `#21290 `_ + +============ +Enhancements +============ + +* Add Auspice JSON datatype by `@pvanheus `_ in `#20466 `_ +* Add SpatialData datatype by `@nilchia `_ in `#21000 `_ +* Use job cache also for implicit conversions by `@mvdbeek `_ in `#21021 `_ +* Add LAS and LAZ file format by `@bgruening `_ in `#21049 `_ +* New datatype addition: gam for vg toolkit by `@SaimMomin12 `_ in `#21096 `_ +* Harden proxy redirect validation by `@davelopez `_ in `#21185 `_ +* support ZARR v3 for Spatialdata dt by `@nilchia `_ in `#21265 `_ + +============= +Other changes +============= + +* New datatype addition: beast.trees datatype by `@SaimMomin12 `_ in `#21055 `_ +* Add display_in_upload to LAZ and LAS by `@bgruening `_ in `#21060 `_ +* Backport `Fix proxy endpoint encoding` by `@davelopez `_ in `#21184 `_ ------------------- 25.0.3 (2025-09-23) diff --git a/packages/meta/setup.cfg b/packages/meta/setup.cfg index 290a397532f..3e7f19e4110 100644 --- a/packages/meta/setup.cfg +++ b/packages/meta/setup.cfg @@ -29,7 +29,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy url = https://github.com/galaxyproject/galaxy -version = 25.0.4.dev0 +version = 25.0.4 [options] include_package_data = True diff --git a/packages/navigation/HISTORY.rst b/packages/navigation/HISTORY.rst index 1fb2e22d8ae..01502b4d0a4 100644 --- a/packages/navigation/HISTORY.rst +++ b/packages/navigation/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -25.0.4.dev0 ------------ - +------------------- +25.0.4 (2025-11-18) +------------------- +No recorded changes since last release ------------------- 25.0.3 (2025-09-23) diff --git a/packages/navigation/setup.cfg b/packages/navigation/setup.cfg index 6aa7c3a990c..d52c29f674a 100644 --- a/packages/navigation/setup.cfg +++ b/packages/navigation/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-navigation url = https://github.com/galaxyproject/galaxy -version = 25.0.4.dev0 +version = 25.0.4 [options] include_package_data = True diff --git a/packages/objectstore/HISTORY.rst b/packages/objectstore/HISTORY.rst index 9357f92e404..d6d137cea2c 100644 --- a/packages/objectstore/HISTORY.rst +++ b/packages/objectstore/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -25.0.4.dev0 ------------ - +------------------- +25.0.4 (2025-11-18) +------------------- +No recorded changes since last release ------------------- 25.0.3 (2025-09-23) diff --git a/packages/objectstore/setup.cfg b/packages/objectstore/setup.cfg index 7dcf13d10d7..1b6a9540637 100644 --- a/packages/objectstore/setup.cfg +++ b/packages/objectstore/setup.cfg @@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-objectstore url = https://github.com/galaxyproject/galaxy -version = 25.0.4.dev0 +version = 25.0.4 [options] include_package_data = True diff --git a/packages/schema/HISTORY.rst b/packages/schema/HISTORY.rst index 2cc131497ef..32a18aadb17 100644 --- a/packages/schema/HISTORY.rst +++ b/packages/schema/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -25.0.4.dev0 ------------ - +------------------- +25.0.4 (2025-11-18) +------------------- +No recorded changes since last release ------------------- 25.0.3 (2025-09-23) diff --git a/packages/schema/setup.cfg b/packages/schema/setup.cfg index 858a60f03d1..d6b35a439ee 100644 --- a/packages/schema/setup.cfg +++ b/packages/schema/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-schema url = https://github.com/galaxyproject/galaxy -version = 25.0.4.dev0 +version = 25.0.4 [options] include_package_data = True diff --git a/packages/selenium/HISTORY.rst b/packages/selenium/HISTORY.rst index 27ce5f6b768..a327c0e4073 100644 --- a/packages/selenium/HISTORY.rst +++ b/packages/selenium/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -25.0.4.dev0 ------------ - +------------------- +25.0.4 (2025-11-18) +------------------- +No recorded changes since last release ------------------- 25.0.3 (2025-09-23) diff --git a/packages/selenium/setup.cfg b/packages/selenium/setup.cfg index 507327c7e29..3567008f11c 100644 --- a/packages/selenium/setup.cfg +++ b/packages/selenium/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-selenium url = https://github.com/galaxyproject/galaxy -version = 25.0.4.dev0 +version = 25.0.4 [options] include_package_data = True diff --git a/packages/test_api/HISTORY.rst b/packages/test_api/HISTORY.rst index fbe7f90a2b6..a6068cef3bb 100644 --- a/packages/test_api/HISTORY.rst +++ b/packages/test_api/HISTORY.rst @@ -3,11 +3,33 @@ History .. to_doc ------------ -25.0.4.dev0 ------------ +------------------- +25.0.4 (2025-11-18) +------------------- +========= +Bug fixes +========= + +* Fix PUT /api/workflows for user defined tools by `@mvdbeek `_ in `#20987 `_ +* Run landing request state through validator by `@mvdbeek `_ in `#21087 `_ +* Fix workflow run form input restrictions by `@mvdbeek `_ in `#21095 `_ +* Create new datasets when creating skipped database operation tool outputs by `@mvdbeek `_ in `#21142 `_ +* Fix proxy url validation for non-printable characters by `@davelopez `_ in `#21280 `_ + +============ +Enhancements +============ + +* Use job cache also for implicit conversions by `@mvdbeek `_ in `#21021 `_ +* Harden proxy redirect validation by `@davelopez `_ in `#21185 `_ + +============= +Other changes +============= + +* Backport `Fix proxy endpoint encoding` by `@davelopez `_ in `#21184 `_ ------------------- 25.0.3 (2025-09-23) diff --git a/packages/test_api/setup.cfg b/packages/test_api/setup.cfg index 14b21066d5a..34577b73427 100644 --- a/packages/test_api/setup.cfg +++ b/packages/test_api/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-test-api url = https://github.com/galaxyproject/galaxy -version = 25.0.4.dev0 +version = 25.0.4 [options] include_package_data = True diff --git a/packages/test_base/HISTORY.rst b/packages/test_base/HISTORY.rst index 84991f7a59c..ca5c37b5edc 100644 --- a/packages/test_base/HISTORY.rst +++ b/packages/test_base/HISTORY.rst @@ -3,11 +3,16 @@ History .. to_doc ------------ -25.0.4.dev0 ------------ +------------------- +25.0.4 (2025-11-18) +------------------- +========= +Bug fixes +========= + +* Run landing request state through validator by `@mvdbeek `_ in `#21087 `_ ------------------- 25.0.3 (2025-09-23) diff --git a/packages/test_base/setup.cfg b/packages/test_base/setup.cfg index e4ea29a3c5f..fa2af492a53 100644 --- a/packages/test_base/setup.cfg +++ b/packages/test_base/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-test-base url = https://github.com/galaxyproject/galaxy -version = 25.0.4.dev0 +version = 25.0.4 [options] include_package_data = True diff --git a/packages/test_driver/HISTORY.rst b/packages/test_driver/HISTORY.rst index e81b517207c..b8f0bc24ecc 100644 --- a/packages/test_driver/HISTORY.rst +++ b/packages/test_driver/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -25.0.4.dev0 ------------ - +------------------- +25.0.4 (2025-11-18) +------------------- +No recorded changes since last release ------------------- 25.0.3 (2025-09-23) diff --git a/packages/test_driver/setup.cfg b/packages/test_driver/setup.cfg index 0487d40a082..2d6d042c48f 100644 --- a/packages/test_driver/setup.cfg +++ b/packages/test_driver/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-test-driver url = https://github.com/galaxyproject/galaxy -version = 25.0.4.dev0 +version = 25.0.4 [options] include_package_data = True diff --git a/packages/tool_shed/HISTORY.rst b/packages/tool_shed/HISTORY.rst index 5dacaa9eb51..41b7125fdc3 100644 --- a/packages/tool_shed/HISTORY.rst +++ b/packages/tool_shed/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -25.0.4.dev0 ------------ - +------------------- +25.0.4 (2025-11-18) +------------------- +No recorded changes since last release ------------------- 25.0.3 (2025-09-23) diff --git a/packages/tool_shed/setup.cfg b/packages/tool_shed/setup.cfg index e6de7935467..80b7aff5806 100644 --- a/packages/tool_shed/setup.cfg +++ b/packages/tool_shed/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-tool-shed url = https://github.com/galaxyproject/galaxy -version = 25.0.4.dev0 +version = 25.0.4 [options] include_package_data = True diff --git a/packages/tool_shed_schema/HISTORY.rst b/packages/tool_shed_schema/HISTORY.rst index 8b9aeb8fbc1..390d5a884ad 100644 --- a/packages/tool_shed_schema/HISTORY.rst +++ b/packages/tool_shed_schema/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -25.0.4.dev0 ------------ - +------------------- +25.0.4 (2025-11-18) +------------------- +No recorded changes since last release ------------------- 25.0.3 (2025-09-23) diff --git a/packages/tool_shed_schema/setup.cfg b/packages/tool_shed_schema/setup.cfg index b06f739a28d..799d43f9148 100644 --- a/packages/tool_shed_schema/setup.cfg +++ b/packages/tool_shed_schema/setup.cfg @@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-tool-shed-schema url = https://github.com/galaxyproject/galaxy -version = 25.0.4.dev0 +version = 25.0.4 [options] include_package_data = True diff --git a/packages/tool_util/HISTORY.rst b/packages/tool_util/HISTORY.rst index c62e55bbd9d..ba49d8425a5 100644 --- a/packages/tool_util/HISTORY.rst +++ b/packages/tool_util/HISTORY.rst @@ -3,11 +3,18 @@ History .. to_doc ------------ -25.0.4.dev0 ------------ +------------------- +25.0.4 (2025-11-18) +------------------- +========= +Bug fixes +========= + +* Fix has_size assertion by `@bernt-matthias `_ in `#21081 `_ +* Fix workflow run form input restrictions by `@mvdbeek `_ in `#21095 `_ +* Fix direct tool execution not using the latest version by `@jmchilton `_ in `#21240 `_ ------------------- 25.0.3 (2025-09-23) diff --git a/packages/tool_util/setup.cfg b/packages/tool_util/setup.cfg index d5e9c54a360..9b06e7e2e74 100644 --- a/packages/tool_util/setup.cfg +++ b/packages/tool_util/setup.cfg @@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-tool-util url = https://github.com/galaxyproject/galaxy -version = 25.0.4.dev0 +version = 25.0.4 [options] include_package_data = True diff --git a/packages/tool_util_models/HISTORY.rst b/packages/tool_util_models/HISTORY.rst index 84fd45ad803..8f7f10240ce 100644 --- a/packages/tool_util_models/HISTORY.rst +++ b/packages/tool_util_models/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -25.0.4.dev0 ------------ - +------------------- +25.0.4 (2025-11-18) +------------------- +No recorded changes since last release ------------------- 25.0.3 (2025-09-23) diff --git a/packages/tool_util_models/setup.cfg b/packages/tool_util_models/setup.cfg index 1bfb5bcab5e..acfabdff376 100644 --- a/packages/tool_util_models/setup.cfg +++ b/packages/tool_util_models/setup.cfg @@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-tool-util-models url = https://github.com/galaxyproject/galaxy -version = 25.0.4.dev0 +version = 25.0.4 [options] include_package_data = True diff --git a/packages/tours/HISTORY.rst b/packages/tours/HISTORY.rst index daad6501594..3f5cbfce52e 100644 --- a/packages/tours/HISTORY.rst +++ b/packages/tours/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -25.0.4.dev0 ------------ - +------------------- +25.0.4 (2025-11-18) +------------------- +No recorded changes since last release ------------------- 25.0.3 (2025-09-23) diff --git a/packages/tours/setup.cfg b/packages/tours/setup.cfg index 02e19fda38c..34e35631eee 100644 --- a/packages/tours/setup.cfg +++ b/packages/tours/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-tours url = https://github.com/galaxyproject/galaxy -version = 25.0.4.dev0 +version = 25.0.4 [options] include_package_data = True diff --git a/packages/util/HISTORY.rst b/packages/util/HISTORY.rst index bf3e7320635..b7850e1d046 100644 --- a/packages/util/HISTORY.rst +++ b/packages/util/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -25.0.4.dev0 ------------ - +------------------- +25.0.4 (2025-11-18) +------------------- +No recorded changes since last release ------------------- 25.0.3 (2025-09-23) diff --git a/packages/util/setup.cfg b/packages/util/setup.cfg index 82b8151ecbd..c31c414239f 100644 --- a/packages/util/setup.cfg +++ b/packages/util/setup.cfg @@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-util url = https://github.com/galaxyproject/galaxy -version = 25.0.4.dev0 +version = 25.0.4 [options] include_package_data = True diff --git a/packages/web_apps/HISTORY.rst b/packages/web_apps/HISTORY.rst index e273d2e9ce1..c279669ef20 100644 --- a/packages/web_apps/HISTORY.rst +++ b/packages/web_apps/HISTORY.rst @@ -3,11 +3,29 @@ History .. to_doc ------------ -25.0.4.dev0 ------------ +------------------- +25.0.4 (2025-11-18) +------------------- +========= +Bug fixes +========= + +* Fix ``test_multiple_decorators`` unit test for FastAPI 0.118.0 by `@nsoranzo `_ in `#20982 `_ +* Fix proxy url validation for non-printable characters by `@davelopez `_ in `#21280 `_ + +============ +Enhancements +============ + +* Harden proxy redirect validation by `@davelopez `_ in `#21185 `_ + +============= +Other changes +============= + +* Backport `Fix proxy endpoint encoding` by `@davelopez `_ in `#21184 `_ ------------------- 25.0.3 (2025-09-23) diff --git a/packages/web_apps/setup.cfg b/packages/web_apps/setup.cfg index 07fe7db8102..716eebcfc37 100644 --- a/packages/web_apps/setup.cfg +++ b/packages/web_apps/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-web-apps url = https://github.com/galaxyproject/galaxy -version = 25.0.4.dev0 +version = 25.0.4 [options] include_package_data = True diff --git a/packages/web_client/HISTORY.rst b/packages/web_client/HISTORY.rst index 5315a403044..3434183d777 100644 --- a/packages/web_client/HISTORY.rst +++ b/packages/web_client/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -25.0.4.dev0 ------------ - +------------------- +25.0.4 (2025-11-18) +------------------- +No recorded changes since last release ------------------- 25.0.3 (2025-09-23) diff --git a/packages/web_client/setup.cfg b/packages/web_client/setup.cfg index ccd47cad447..60e62548ae0 100644 --- a/packages/web_client/setup.cfg +++ b/packages/web_client/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-web-client url = https://github.com/galaxyproject/galaxy -version = 25.0.4.dev0 +version = 25.0.4 [options] include_package_data = True diff --git a/packages/web_framework/HISTORY.rst b/packages/web_framework/HISTORY.rst index 9e320a14b74..15dca6d7354 100644 --- a/packages/web_framework/HISTORY.rst +++ b/packages/web_framework/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -25.0.4.dev0 ------------ - +------------------- +25.0.4 (2025-11-18) +------------------- +No recorded changes since last release ------------------- 25.0.3 (2025-09-23) diff --git a/packages/web_framework/setup.cfg b/packages/web_framework/setup.cfg index bfd1cceaa04..a912d1085d4 100644 --- a/packages/web_framework/setup.cfg +++ b/packages/web_framework/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-web-framework url = https://github.com/galaxyproject/galaxy -version = 25.0.4.dev0 +version = 25.0.4 [options] include_package_data = True diff --git a/packages/web_stack/HISTORY.rst b/packages/web_stack/HISTORY.rst index 2801ae51aea..2858bde2877 100644 --- a/packages/web_stack/HISTORY.rst +++ b/packages/web_stack/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -25.0.4.dev0 ------------ - +------------------- +25.0.4 (2025-11-18) +------------------- +No recorded changes since last release ------------------- 25.0.3 (2025-09-23) diff --git a/packages/web_stack/setup.cfg b/packages/web_stack/setup.cfg index 81c7c21e713..f58eb3404f0 100644 --- a/packages/web_stack/setup.cfg +++ b/packages/web_stack/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-web-stack url = https://github.com/galaxyproject/galaxy -version = 25.0.4.dev0 +version = 25.0.4 [options] include_package_data = True From f764acd3378ca6f75e2693a8141352b314ccc4f0 Mon Sep 17 00:00:00 2001 From: mvdbeek Date: Tue, 18 Nov 2025 16:02:22 +0100 Subject: [PATCH 2/2] Start work on 25.0.5.dev0 --- client/package.json | 2 +- lib/galaxy/version.py | 2 +- packages/app/HISTORY.rst | 6 ++++++ packages/app/setup.cfg | 2 +- packages/auth/HISTORY.rst | 6 ++++++ packages/auth/setup.cfg | 2 +- packages/config/HISTORY.rst | 6 ++++++ packages/config/setup.cfg | 2 +- packages/data/HISTORY.rst | 6 ++++++ packages/data/setup.cfg | 2 +- packages/files/HISTORY.rst | 6 ++++++ packages/files/setup.cfg | 2 +- packages/job_execution/HISTORY.rst | 6 ++++++ packages/job_execution/setup.cfg | 2 +- packages/job_metrics/HISTORY.rst | 6 ++++++ packages/job_metrics/setup.cfg | 2 +- packages/meta/HISTORY.rst | 6 ++++++ packages/meta/setup.cfg | 2 +- packages/navigation/HISTORY.rst | 6 ++++++ packages/navigation/setup.cfg | 2 +- packages/objectstore/HISTORY.rst | 6 ++++++ packages/objectstore/setup.cfg | 2 +- packages/schema/HISTORY.rst | 6 ++++++ packages/schema/setup.cfg | 2 +- packages/selenium/HISTORY.rst | 6 ++++++ packages/selenium/setup.cfg | 2 +- packages/test_api/HISTORY.rst | 6 ++++++ packages/test_api/setup.cfg | 2 +- packages/test_base/HISTORY.rst | 6 ++++++ packages/test_base/setup.cfg | 2 +- packages/test_driver/HISTORY.rst | 6 ++++++ packages/test_driver/setup.cfg | 2 +- packages/tool_shed/HISTORY.rst | 6 ++++++ packages/tool_shed/setup.cfg | 2 +- packages/tool_shed_schema/HISTORY.rst | 6 ++++++ packages/tool_shed_schema/setup.cfg | 2 +- packages/tool_util/HISTORY.rst | 6 ++++++ packages/tool_util/setup.cfg | 2 +- packages/tool_util_models/HISTORY.rst | 6 ++++++ packages/tool_util_models/setup.cfg | 2 +- packages/tours/HISTORY.rst | 6 ++++++ packages/tours/setup.cfg | 2 +- packages/util/HISTORY.rst | 6 ++++++ packages/util/setup.cfg | 2 +- packages/web_apps/HISTORY.rst | 6 ++++++ packages/web_apps/setup.cfg | 2 +- packages/web_client/HISTORY.rst | 6 ++++++ packages/web_client/setup.cfg | 2 +- packages/web_framework/HISTORY.rst | 6 ++++++ packages/web_framework/setup.cfg | 2 +- packages/web_stack/HISTORY.rst | 6 ++++++ packages/web_stack/setup.cfg | 2 +- 52 files changed, 177 insertions(+), 27 deletions(-) diff --git a/client/package.json b/client/package.json index 2e1b32fe298..a10f082f3fe 100644 --- a/client/package.json +++ b/client/package.json @@ -1,6 +1,6 @@ { "name": "@galaxyproject/galaxy-client", - "version": "25.0.4", + "version": "25.0.5.dev0", "description": "Galaxy client application build system", "keywords": [ "galaxy" diff --git a/lib/galaxy/version.py b/lib/galaxy/version.py index c21baa048e0..c045765f9af 100644 --- a/lib/galaxy/version.py +++ b/lib/galaxy/version.py @@ -1,3 +1,3 @@ VERSION_MAJOR = "25.0" -VERSION_MINOR = "4" +VERSION_MINOR = "5.dev0" VERSION = VERSION_MAJOR + (f".{VERSION_MINOR}" if VERSION_MINOR else "") diff --git a/packages/app/HISTORY.rst b/packages/app/HISTORY.rst index 03d14708c7b..25b55ab29c7 100644 --- a/packages/app/HISTORY.rst +++ b/packages/app/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.0.5.dev0 +----------- + + + ------------------- 25.0.4 (2025-11-18) ------------------- diff --git a/packages/app/setup.cfg b/packages/app/setup.cfg index ae71384289d..93eab51cf9b 100644 --- a/packages/app/setup.cfg +++ b/packages/app/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-app url = https://github.com/galaxyproject/galaxy -version = 25.0.4 +version = 25.0.5.dev0 [options] include_package_data = True diff --git a/packages/auth/HISTORY.rst b/packages/auth/HISTORY.rst index db3f08ff2d0..a5e9b529c33 100644 --- a/packages/auth/HISTORY.rst +++ b/packages/auth/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.0.5.dev0 +----------- + + + ------------------- 25.0.4 (2025-11-18) ------------------- diff --git a/packages/auth/setup.cfg b/packages/auth/setup.cfg index ad5c355b8ad..c4acd2a7081 100644 --- a/packages/auth/setup.cfg +++ b/packages/auth/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-auth url = https://github.com/galaxyproject/galaxy -version = 25.0.4 +version = 25.0.5.dev0 [options] include_package_data = True diff --git a/packages/config/HISTORY.rst b/packages/config/HISTORY.rst index b4c9b7c09ab..936e3cf1957 100644 --- a/packages/config/HISTORY.rst +++ b/packages/config/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.0.5.dev0 +----------- + + + ------------------- 25.0.4 (2025-11-18) ------------------- diff --git a/packages/config/setup.cfg b/packages/config/setup.cfg index cf7497b22a9..215077cf8a1 100644 --- a/packages/config/setup.cfg +++ b/packages/config/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-config url = https://github.com/galaxyproject/galaxy -version = 25.0.4 +version = 25.0.5.dev0 [options] include_package_data = True diff --git a/packages/data/HISTORY.rst b/packages/data/HISTORY.rst index e62c80dcde6..0be9dc13077 100644 --- a/packages/data/HISTORY.rst +++ b/packages/data/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.0.5.dev0 +----------- + + + ------------------- 25.0.4 (2025-11-18) ------------------- diff --git a/packages/data/setup.cfg b/packages/data/setup.cfg index fe694c834e6..90edefcf17e 100644 --- a/packages/data/setup.cfg +++ b/packages/data/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-data url = https://github.com/galaxyproject/galaxy -version = 25.0.4 +version = 25.0.5.dev0 [options] include_package_data = True diff --git a/packages/files/HISTORY.rst b/packages/files/HISTORY.rst index 7944338d188..82cca210a7c 100644 --- a/packages/files/HISTORY.rst +++ b/packages/files/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.0.5.dev0 +----------- + + + ------------------- 25.0.4 (2025-11-18) ------------------- diff --git a/packages/files/setup.cfg b/packages/files/setup.cfg index 9ad204bea61..68ecde43b0b 100644 --- a/packages/files/setup.cfg +++ b/packages/files/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-files url = https://github.com/galaxyproject/galaxy -version = 25.0.4 +version = 25.0.5.dev0 [options] include_package_data = True diff --git a/packages/job_execution/HISTORY.rst b/packages/job_execution/HISTORY.rst index c39c2303d66..665bb1ee576 100644 --- a/packages/job_execution/HISTORY.rst +++ b/packages/job_execution/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.0.5.dev0 +----------- + + + ------------------- 25.0.4 (2025-11-18) ------------------- diff --git a/packages/job_execution/setup.cfg b/packages/job_execution/setup.cfg index 7c9bfb9a552..71da4da8ea5 100644 --- a/packages/job_execution/setup.cfg +++ b/packages/job_execution/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-job-execution url = https://github.com/galaxyproject/galaxy -version = 25.0.4 +version = 25.0.5.dev0 [options] include_package_data = True diff --git a/packages/job_metrics/HISTORY.rst b/packages/job_metrics/HISTORY.rst index fc34f13b1dc..307e1ed24b0 100644 --- a/packages/job_metrics/HISTORY.rst +++ b/packages/job_metrics/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.0.5.dev0 +----------- + + + ------------------- 25.0.4 (2025-11-18) ------------------- diff --git a/packages/job_metrics/setup.cfg b/packages/job_metrics/setup.cfg index 741ca0a7ac5..4b6d2fd884a 100644 --- a/packages/job_metrics/setup.cfg +++ b/packages/job_metrics/setup.cfg @@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-job-metrics url = https://github.com/galaxyproject/galaxy -version = 25.0.4 +version = 25.0.5.dev0 [options] include_package_data = True diff --git a/packages/meta/HISTORY.rst b/packages/meta/HISTORY.rst index 74958866813..b974a3dac56 100644 --- a/packages/meta/HISTORY.rst +++ b/packages/meta/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.0.5.dev0 +----------- + + + ------------------- 25.0.4 (2025-11-18) ------------------- diff --git a/packages/meta/setup.cfg b/packages/meta/setup.cfg index 3e7f19e4110..a6f45e48cfb 100644 --- a/packages/meta/setup.cfg +++ b/packages/meta/setup.cfg @@ -29,7 +29,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy url = https://github.com/galaxyproject/galaxy -version = 25.0.4 +version = 25.0.5.dev0 [options] include_package_data = True diff --git a/packages/navigation/HISTORY.rst b/packages/navigation/HISTORY.rst index 01502b4d0a4..7faae0b18a5 100644 --- a/packages/navigation/HISTORY.rst +++ b/packages/navigation/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.0.5.dev0 +----------- + + + ------------------- 25.0.4 (2025-11-18) ------------------- diff --git a/packages/navigation/setup.cfg b/packages/navigation/setup.cfg index d52c29f674a..f50cae65c89 100644 --- a/packages/navigation/setup.cfg +++ b/packages/navigation/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-navigation url = https://github.com/galaxyproject/galaxy -version = 25.0.4 +version = 25.0.5.dev0 [options] include_package_data = True diff --git a/packages/objectstore/HISTORY.rst b/packages/objectstore/HISTORY.rst index d6d137cea2c..ed83dd84465 100644 --- a/packages/objectstore/HISTORY.rst +++ b/packages/objectstore/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.0.5.dev0 +----------- + + + ------------------- 25.0.4 (2025-11-18) ------------------- diff --git a/packages/objectstore/setup.cfg b/packages/objectstore/setup.cfg index 1b6a9540637..2c2cdfee9db 100644 --- a/packages/objectstore/setup.cfg +++ b/packages/objectstore/setup.cfg @@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-objectstore url = https://github.com/galaxyproject/galaxy -version = 25.0.4 +version = 25.0.5.dev0 [options] include_package_data = True diff --git a/packages/schema/HISTORY.rst b/packages/schema/HISTORY.rst index 32a18aadb17..ba17ba92e89 100644 --- a/packages/schema/HISTORY.rst +++ b/packages/schema/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.0.5.dev0 +----------- + + + ------------------- 25.0.4 (2025-11-18) ------------------- diff --git a/packages/schema/setup.cfg b/packages/schema/setup.cfg index d6b35a439ee..97e72956c02 100644 --- a/packages/schema/setup.cfg +++ b/packages/schema/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-schema url = https://github.com/galaxyproject/galaxy -version = 25.0.4 +version = 25.0.5.dev0 [options] include_package_data = True diff --git a/packages/selenium/HISTORY.rst b/packages/selenium/HISTORY.rst index a327c0e4073..637bc041283 100644 --- a/packages/selenium/HISTORY.rst +++ b/packages/selenium/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.0.5.dev0 +----------- + + + ------------------- 25.0.4 (2025-11-18) ------------------- diff --git a/packages/selenium/setup.cfg b/packages/selenium/setup.cfg index 3567008f11c..f73b4a548c7 100644 --- a/packages/selenium/setup.cfg +++ b/packages/selenium/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-selenium url = https://github.com/galaxyproject/galaxy -version = 25.0.4 +version = 25.0.5.dev0 [options] include_package_data = True diff --git a/packages/test_api/HISTORY.rst b/packages/test_api/HISTORY.rst index a6068cef3bb..1b4f4c520b0 100644 --- a/packages/test_api/HISTORY.rst +++ b/packages/test_api/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.0.5.dev0 +----------- + + + ------------------- 25.0.4 (2025-11-18) ------------------- diff --git a/packages/test_api/setup.cfg b/packages/test_api/setup.cfg index 34577b73427..3b2cd8775e4 100644 --- a/packages/test_api/setup.cfg +++ b/packages/test_api/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-test-api url = https://github.com/galaxyproject/galaxy -version = 25.0.4 +version = 25.0.5.dev0 [options] include_package_data = True diff --git a/packages/test_base/HISTORY.rst b/packages/test_base/HISTORY.rst index ca5c37b5edc..da926d76592 100644 --- a/packages/test_base/HISTORY.rst +++ b/packages/test_base/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.0.5.dev0 +----------- + + + ------------------- 25.0.4 (2025-11-18) ------------------- diff --git a/packages/test_base/setup.cfg b/packages/test_base/setup.cfg index fa2af492a53..e97b5e356ba 100644 --- a/packages/test_base/setup.cfg +++ b/packages/test_base/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-test-base url = https://github.com/galaxyproject/galaxy -version = 25.0.4 +version = 25.0.5.dev0 [options] include_package_data = True diff --git a/packages/test_driver/HISTORY.rst b/packages/test_driver/HISTORY.rst index b8f0bc24ecc..e5aef6c9e1a 100644 --- a/packages/test_driver/HISTORY.rst +++ b/packages/test_driver/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.0.5.dev0 +----------- + + + ------------------- 25.0.4 (2025-11-18) ------------------- diff --git a/packages/test_driver/setup.cfg b/packages/test_driver/setup.cfg index 2d6d042c48f..319b41928bc 100644 --- a/packages/test_driver/setup.cfg +++ b/packages/test_driver/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-test-driver url = https://github.com/galaxyproject/galaxy -version = 25.0.4 +version = 25.0.5.dev0 [options] include_package_data = True diff --git a/packages/tool_shed/HISTORY.rst b/packages/tool_shed/HISTORY.rst index 41b7125fdc3..30a5c885e44 100644 --- a/packages/tool_shed/HISTORY.rst +++ b/packages/tool_shed/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.0.5.dev0 +----------- + + + ------------------- 25.0.4 (2025-11-18) ------------------- diff --git a/packages/tool_shed/setup.cfg b/packages/tool_shed/setup.cfg index 80b7aff5806..3cb1c39cad2 100644 --- a/packages/tool_shed/setup.cfg +++ b/packages/tool_shed/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-tool-shed url = https://github.com/galaxyproject/galaxy -version = 25.0.4 +version = 25.0.5.dev0 [options] include_package_data = True diff --git a/packages/tool_shed_schema/HISTORY.rst b/packages/tool_shed_schema/HISTORY.rst index 390d5a884ad..a75fd42aa31 100644 --- a/packages/tool_shed_schema/HISTORY.rst +++ b/packages/tool_shed_schema/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.0.5.dev0 +----------- + + + ------------------- 25.0.4 (2025-11-18) ------------------- diff --git a/packages/tool_shed_schema/setup.cfg b/packages/tool_shed_schema/setup.cfg index 799d43f9148..1a172f3cc7b 100644 --- a/packages/tool_shed_schema/setup.cfg +++ b/packages/tool_shed_schema/setup.cfg @@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-tool-shed-schema url = https://github.com/galaxyproject/galaxy -version = 25.0.4 +version = 25.0.5.dev0 [options] include_package_data = True diff --git a/packages/tool_util/HISTORY.rst b/packages/tool_util/HISTORY.rst index ba49d8425a5..51368fe1be4 100644 --- a/packages/tool_util/HISTORY.rst +++ b/packages/tool_util/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.0.5.dev0 +----------- + + + ------------------- 25.0.4 (2025-11-18) ------------------- diff --git a/packages/tool_util/setup.cfg b/packages/tool_util/setup.cfg index 9b06e7e2e74..b2d908ce478 100644 --- a/packages/tool_util/setup.cfg +++ b/packages/tool_util/setup.cfg @@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-tool-util url = https://github.com/galaxyproject/galaxy -version = 25.0.4 +version = 25.0.5.dev0 [options] include_package_data = True diff --git a/packages/tool_util_models/HISTORY.rst b/packages/tool_util_models/HISTORY.rst index 8f7f10240ce..1c5e990d05b 100644 --- a/packages/tool_util_models/HISTORY.rst +++ b/packages/tool_util_models/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.0.5.dev0 +----------- + + + ------------------- 25.0.4 (2025-11-18) ------------------- diff --git a/packages/tool_util_models/setup.cfg b/packages/tool_util_models/setup.cfg index acfabdff376..42029eef148 100644 --- a/packages/tool_util_models/setup.cfg +++ b/packages/tool_util_models/setup.cfg @@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-tool-util-models url = https://github.com/galaxyproject/galaxy -version = 25.0.4 +version = 25.0.5.dev0 [options] include_package_data = True diff --git a/packages/tours/HISTORY.rst b/packages/tours/HISTORY.rst index 3f5cbfce52e..3510a7a3be0 100644 --- a/packages/tours/HISTORY.rst +++ b/packages/tours/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.0.5.dev0 +----------- + + + ------------------- 25.0.4 (2025-11-18) ------------------- diff --git a/packages/tours/setup.cfg b/packages/tours/setup.cfg index 34e35631eee..25d4db34d82 100644 --- a/packages/tours/setup.cfg +++ b/packages/tours/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-tours url = https://github.com/galaxyproject/galaxy -version = 25.0.4 +version = 25.0.5.dev0 [options] include_package_data = True diff --git a/packages/util/HISTORY.rst b/packages/util/HISTORY.rst index b7850e1d046..b901c726523 100644 --- a/packages/util/HISTORY.rst +++ b/packages/util/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.0.5.dev0 +----------- + + + ------------------- 25.0.4 (2025-11-18) ------------------- diff --git a/packages/util/setup.cfg b/packages/util/setup.cfg index c31c414239f..7c1d0dc4747 100644 --- a/packages/util/setup.cfg +++ b/packages/util/setup.cfg @@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-util url = https://github.com/galaxyproject/galaxy -version = 25.0.4 +version = 25.0.5.dev0 [options] include_package_data = True diff --git a/packages/web_apps/HISTORY.rst b/packages/web_apps/HISTORY.rst index c279669ef20..955d1dac885 100644 --- a/packages/web_apps/HISTORY.rst +++ b/packages/web_apps/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.0.5.dev0 +----------- + + + ------------------- 25.0.4 (2025-11-18) ------------------- diff --git a/packages/web_apps/setup.cfg b/packages/web_apps/setup.cfg index 716eebcfc37..149992c8d29 100644 --- a/packages/web_apps/setup.cfg +++ b/packages/web_apps/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-web-apps url = https://github.com/galaxyproject/galaxy -version = 25.0.4 +version = 25.0.5.dev0 [options] include_package_data = True diff --git a/packages/web_client/HISTORY.rst b/packages/web_client/HISTORY.rst index 3434183d777..35217065c30 100644 --- a/packages/web_client/HISTORY.rst +++ b/packages/web_client/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.0.5.dev0 +----------- + + + ------------------- 25.0.4 (2025-11-18) ------------------- diff --git a/packages/web_client/setup.cfg b/packages/web_client/setup.cfg index 60e62548ae0..f424a89527a 100644 --- a/packages/web_client/setup.cfg +++ b/packages/web_client/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-web-client url = https://github.com/galaxyproject/galaxy -version = 25.0.4 +version = 25.0.5.dev0 [options] include_package_data = True diff --git a/packages/web_framework/HISTORY.rst b/packages/web_framework/HISTORY.rst index 15dca6d7354..a83947fd8b6 100644 --- a/packages/web_framework/HISTORY.rst +++ b/packages/web_framework/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.0.5.dev0 +----------- + + + ------------------- 25.0.4 (2025-11-18) ------------------- diff --git a/packages/web_framework/setup.cfg b/packages/web_framework/setup.cfg index a912d1085d4..4340d450e68 100644 --- a/packages/web_framework/setup.cfg +++ b/packages/web_framework/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-web-framework url = https://github.com/galaxyproject/galaxy -version = 25.0.4 +version = 25.0.5.dev0 [options] include_package_data = True diff --git a/packages/web_stack/HISTORY.rst b/packages/web_stack/HISTORY.rst index 2858bde2877..5d958c1e877 100644 --- a/packages/web_stack/HISTORY.rst +++ b/packages/web_stack/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.0.5.dev0 +----------- + + + ------------------- 25.0.4 (2025-11-18) ------------------- diff --git a/packages/web_stack/setup.cfg b/packages/web_stack/setup.cfg index f58eb3404f0..600bfd924d2 100644 --- a/packages/web_stack/setup.cfg +++ b/packages/web_stack/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-web-stack url = https://github.com/galaxyproject/galaxy -version = 25.0.4 +version = 25.0.5.dev0 [options] include_package_data = True