Merge branch 'release_16.04' into dev

test-data/biom1_metadata_test.txt

@@ -0,0 +1,11 @@
+table_rows: __ob__u__sq__2__sq__, u__sq__3__sq__, u__sq__4__sq__, u__sq__5__sq__, u__sq__8__sq__, u__sq__9__sq__, u__sq__10__sq__, u__sq__11__sq__, u__sq__12__sq__, u__sq__14__sq__, u__sq__15__sq__, u__sq__16__sq__, u__sq__17__sq__, u__sq__18__sq__, u__sq__22__sq__, u__sq__23__sq__, u__sq__25__sq__, u__sq__28__sq__, u__sq__29__sq____cb__
+table_matrix_element_type: float
+table_format: Biological Observation Matrix 1.0.0
+table_generated_by: BIOM-Format 2.1.5
+table_matrix_type: sparse
+table_shape: __ob__19, 2__cb__
+table_format_url: http://biom-format.org
+table_date: 2016-05-26T16:43:45.614267
+table_type: OTU table
+table_id: None
+table_columns: __ob__u__sq__SAMPLE_1__sq__, u__sq__SAMPLE_2__sq____cb__

test-data/input_taxonomy.biom1

@@ -0,0 +1 @@
+{"id": "None","format": "Biological Observation Matrix 1.0.0","format_url": "http://biom-format.org","matrix_type": "sparse","generated_by": "BIOM-Format 2.1.5","date": "2016-05-26T16:43:45.614267","type": "OTU table","matrix_element_type": "float","shape": [19, 2],"data": [[1,0,160.0],[1,1,242.0],[6,0,1.0],[6,1,1.0],[7,0,3.0],[7,1,4.0],[12,0,13.0],[12,1,36.0],[14,0,1.0],[14,1,5.0],[15,0,1.0],[16,0,1.0],[16,1,3.0]],"rows": [{"id": "2", "metadata": {"taxonomy": ["d__Archaea"]}},{"id": "3", "metadata": {"taxonomy": ["d__Bacteria"]}},{"id": "4", "metadata": {"taxonomy": ["d__Archaea", "p__Crenarchaeota"]}},{"id": "5", "metadata": {"taxonomy": ["d__Archaea", "p__Euryarchaeota"]}},{"id": "8", "metadata": {"taxonomy": ["d__Bacteria", "p__AC1"]}},{"id": "9", "metadata": {"taxonomy": ["d__Bacteria", "p__AD3"]}},{"id": "10", "metadata": {"taxonomy": ["d__Bacteria", "p__Acidobacteria"]}},{"id": "11", "metadata": {"taxonomy": ["d__Bacteria", "p__Actinobacteria"]}},{"id": "12", "metadata": {"taxonomy": ["d__Bacteria", "p__AncK6"]}},{"id": "14", "metadata": {"taxonomy": ["d__Bacteria", "p__Armatimonadetes"]}},{"id": "15", "metadata": {"taxonomy": ["d__Bacteria", "p__BHI80-139"]}},{"id": "16", "metadata": {"taxonomy": ["d__Bacteria", "p__BRC1"]}},{"id": "17", "metadata": {"taxonomy": ["d__Bacteria", "p__Bacteroidetes"]}},{"id": "18", "metadata": {"taxonomy": ["d__Bacteria", "p__CD12"]}},{"id": "22", "metadata": {"taxonomy": ["d__Bacteria", "p__Chlorobi"]}},{"id": "23", "metadata": {"taxonomy": ["d__Bacteria", "p__Chloroflexi"]}},{"id": "25", "metadata": {"taxonomy": ["d__Bacteria", "p__Cyanobacteria"]}},{"id": "28", "metadata": {"taxonomy": ["d__Bacteria", "p__EM19"]}},{"id": "29", "metadata": {"taxonomy": ["d__Bacteria", "p__EM3"]}}],"columns": [{"id": "SAMPLE_1", "metadata": null},{"id": "SAMPLE_2", "metadata": null}]}