From bb4106672077e4cb8aa2b7d3f0554770d497eaac Mon Sep 17 00:00:00 2001 From: galaxybot Date: Sat, 25 Jun 2022 03:39:28 +0000 Subject: [PATCH] Update Python dependencies --- lib/galaxy/dependencies/dev-requirements.txt | 19 +++++++++---------- .../dependencies/pinned-lint-requirements.txt | 6 +++--- .../dependencies/pinned-requirements.txt | 15 +++++++-------- 3 files changed, 19 insertions(+), 21 deletions(-) diff --git a/lib/galaxy/dependencies/dev-requirements.txt b/lib/galaxy/dependencies/dev-requirements.txt index f69aa8e6be8..01f3a8c348d 100644 --- a/lib/galaxy/dependencies/dev-requirements.txt +++ b/lib/galaxy/dependencies/dev-requirements.txt @@ -11,7 +11,6 @@ apispec==5.2.2; python_version >= "3.7" appdirs==1.4.4 argcomplete==2.0.0; python_version >= "3.6" and python_version < "4" ase==3.22.1; python_version >= "3.6" -asgiref==3.5.2; python_version >= "3.7" async-generator==1.10; python_version >= "3.7" and python_version < "4.0" atomicwrites==1.4.0; python_version >= "3.7" and python_full_version < "3.0.0" and sys_platform == "win32" or sys_platform == "win32" and python_version >= "3.7" and python_full_version >= "3.4.0" attmap==0.13.2 @@ -47,7 +46,7 @@ colorama==0.4.5; sys_platform == "win32" and python_version >= "3.7" and python_ coloredlogs==15.0.1; python_version >= "3.6" and python_full_version < "3.0.0" and python_version < "4" or python_version >= "3.6" and python_version < "4" and python_full_version >= "3.5.0" commonmark==0.9.1; python_full_version >= "3.6.3" and python_full_version < "4.0.0" coverage==6.4.1; python_version >= "3.7" -cryptography==37.0.2; python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "4" and (python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4") or python_full_version >= "3.5.0" and python_version < "4" and python_version >= "3.7" and (python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4") +cryptography==37.0.3; python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "4" and (python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4") or python_full_version >= "3.5.0" and python_version < "4" and python_version >= "3.7" and (python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4") cwltest==2.2.20210901154959; python_version >= "3.6" and python_version < "4" cwltool==3.1.20211107152837; python_version >= "3.6" and python_version < "4" cycler==0.11.0; python_version >= "3.7" @@ -117,7 +116,7 @@ oyaml==1.0 packaging==21.3; python_version >= "3.7" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.7" paramiko==2.11.0 parsley==1.3 -paste==3.5.0 +paste==3.5.1 pastedeploy==2.1.1 pathspec==0.9.0; python_full_version >= "3.6.2" and python_version >= "3.7" pbr==5.9.0; python_version >= "2.6" @@ -134,7 +133,7 @@ pulsar-galaxy-lib==0.14.13 py==1.11.0; python_version >= "3.7" and python_full_version < "3.0.0" and implementation_name == "pypy" or python_full_version >= "3.5.0" and python_version >= "3.7" and implementation_name == "pypy" pyasn1==0.4.8; python_version >= "3.6" and python_version < "4" pycparser==2.21 -pycryptodome==3.14.1; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.5.0") +pycryptodome==3.15.0; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.5.0") pydantic==1.9.1; python_full_version >= "3.6.1" pydot==1.4.2; python_version >= "3.6" and python_full_version < "3.0.0" and python_version < "4" or python_version >= "3.6" and python_version < "4" and python_full_version >= "3.4.0" pyeventsystem==0.1.0 @@ -158,7 +157,7 @@ pytest-cov==3.0.0; python_version >= "3.6" pytest-html==3.1.1; python_version >= "3.6" pytest-json-report==1.5.0 pytest-metadata==2.0.1; python_full_version >= "3.7.0" and python_full_version < "3.11.0" and python_version >= "3.6" -pytest-mock==3.7.0; python_version >= "3.7" +pytest-mock==3.8.1; python_version >= "3.7" pytest-postgresql==4.1.1; python_version >= "3.7" pytest-shard==0.1.2; python_version >= "3.6" pytest==7.1.2; python_version >= "3.7" @@ -170,7 +169,7 @@ python-multipart==0.0.5 python3-openid==3.2.0; python_version >= "3.0" pytz==2022.1; python_version >= "3.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4" and python_version >= "3.7" pyyaml==6.0; python_version >= "3.6" -pyzmq==23.1.0; python_version >= "3.6" +pyzmq==23.2.0; python_version >= "3.6" rdflib==6.0.2; python_version >= "3.7" and python_version < "4" recommonmark==0.7.1 refgenconf==0.12.2 @@ -187,7 +186,7 @@ ruamel.yaml.clib==0.2.6; platform_python_implementation == "CPython" and python_ ruamel.yaml==0.17.17; python_version >= "3.6" and python_version < "4" schema-salad==8.3.20220525163636; python_version >= "3.6" and python_version < "4" scipy==1.7.3; python_version >= "3.7" and python_version < "3.11" -selenium==4.2.0; python_version >= "3.7" and python_version < "4.0" +selenium==4.3.0; python_version >= "3.7" and python_version < "4.0" setuptools-scm==5.0.2; python_version >= "3.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4" and python_version >= "3.7" shellescape==3.8.1; python_version >= "3.6" and python_version < "4" six==1.16.0; python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "4" or python_full_version >= "3.3.0" and python_version >= "3.7" and python_version < "4" @@ -205,10 +204,10 @@ sphinxcontrib-jsmath==1.0.1; python_version >= "3.6" and python_full_version < " sphinxcontrib-qthelp==1.0.3; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6" sphinxcontrib-serializinghtml==1.1.5; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6" sqlalchemy-migrate==0.13.0 -sqlalchemy==1.4.37; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.6.0") +sqlalchemy==1.4.39; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.6.0") sqlitedict==2.0.0 sqlparse==0.4.2; python_version >= "3.5" -starlette-context==0.3.3; python_version >= "3.7" +starlette-context==0.3.4; python_version >= "3.7" starlette==0.19.1; python_version >= "3.6" statsd==3.3.0 supervisor==4.2.4; python_version >= "3.6" @@ -232,7 +231,7 @@ typing-extensions==4.2.0; python_version >= "3.7" tzlocal==2.1; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4" ubiquerg==0.6.2 urllib3==1.26.9; python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "4" and (python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4") or python_full_version >= "3.5.0" and python_version < "4" and python_version >= "3.7" and (python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4") -uvicorn==0.17.6; python_version >= "3.7" +uvicorn==0.18.1; python_version >= "3.7" uvloop==0.16.0; python_version >= "3.7" vine==5.0.0; python_version >= "3.7" watchdog==2.1.9; python_version >= "3.6" diff --git a/lib/galaxy/dependencies/pinned-lint-requirements.txt b/lib/galaxy/dependencies/pinned-lint-requirements.txt index 26cde97e01b..b12727a3112 100644 --- a/lib/galaxy/dependencies/pinned-lint-requirements.txt +++ b/lib/galaxy/dependencies/pinned-lint-requirements.txt @@ -16,11 +16,11 @@ types-cryptography==3.3.21 types-dataclasses==0.6.5 types-docutils==0.18.3 types-Markdown==3.3.28 -types-paramiko==2.10.0 +types-paramiko==2.11.0 types-pkg-resources==0.1.3 -types-python-dateutil==2.8.17 +types-python-dateutil==2.8.18 types-PyYAML==6.0.8 -types-requests==2.27.30 +types-requests==2.27.31 types-six==1.16.16 types-urllib3==1.26.15 typing_extensions==4.2.0 diff --git a/lib/galaxy/dependencies/pinned-requirements.txt b/lib/galaxy/dependencies/pinned-requirements.txt index 7236e2878d8..f51fec60c51 100644 --- a/lib/galaxy/dependencies/pinned-requirements.txt +++ b/lib/galaxy/dependencies/pinned-requirements.txt @@ -9,7 +9,6 @@ anyio==3.6.1; python_version >= "3.7" and python_full_version >= "3.6.2" apispec==5.2.2; python_version >= "3.7" appdirs==1.4.4 argcomplete==2.0.0; python_version >= "3.6" and python_version < "4" -asgiref==3.5.2; python_version >= "3.7" attmap==0.13.2 attrs==21.4.0; python_version >= "3.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version >= "3.7" babel==2.10.3; python_version >= "3.6" @@ -41,7 +40,7 @@ cloudbridge==3.0.0 colorama==0.4.5; python_version >= "3.7" and python_full_version < "3.0.0" and platform_system == "Windows" or platform_system == "Windows" and python_version >= "3.7" and python_full_version >= "3.5.0" coloredlogs==15.0.1; python_version >= "3.6" and python_full_version < "3.0.0" and python_version < "4" or python_version >= "3.6" and python_version < "4" and python_full_version >= "3.5.0" commonmark==0.9.1; python_full_version >= "3.6.3" and python_full_version < "4.0.0" -cryptography==37.0.2; python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "4" and (python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4") or python_full_version >= "3.5.0" and python_version < "4" and python_version >= "3.7" and (python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4") +cryptography==37.0.3; python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "4" and (python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4") or python_full_version >= "3.5.0" and python_version < "4" and python_version >= "3.7" and (python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4") cwltool==3.1.20211107152837; python_version >= "3.6" and python_version < "4" decorator==5.1.1; python_version >= "3.6" and python_version < "4" defusedxml==0.7.1; python_version >= "3.0" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version >= "3.0" @@ -92,7 +91,7 @@ oyaml==1.0 packaging==21.3; python_version >= "3.6" paramiko==2.11.0 parsley==1.3 -paste==3.5.0 +paste==3.5.1 pastedeploy==2.1.1 pbr==5.9.0; python_version >= "2.6" pebble==4.6.3 @@ -103,7 +102,7 @@ pulsar-galaxy-lib==0.14.13 py==1.11.0; python_version >= "3.6" and python_full_version < "3.0.0" and implementation_name == "pypy" or implementation_name == "pypy" and python_version >= "3.6" and python_full_version >= "3.5.0" pyasn1==0.4.8; python_version >= "3.6" and python_version < "4" pycparser==2.21; python_version >= "3.6" and python_full_version < "3.0.0" and implementation_name == "pypy" or implementation_name == "pypy" and python_version >= "3.6" and python_full_version >= "3.4.0" -pycryptodome==3.14.1; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.5.0") +pycryptodome==3.15.0; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.5.0") pydantic==1.9.1; python_full_version >= "3.6.1" pydot==1.4.2; python_version >= "3.6" and python_full_version < "3.0.0" and python_version < "4" or python_version >= "3.6" and python_version < "4" and python_full_version >= "3.4.0" pyeventsystem==0.1.0 @@ -125,7 +124,7 @@ python-multipart==0.0.5 python3-openid==3.2.0; python_version >= "3.0" pytz==2022.1; python_version >= "3.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4" and python_version >= "3.7" pyyaml==6.0; python_version >= "3.6" -pyzmq==23.1.0; python_version >= "3.6" +pyzmq==23.2.0; python_version >= "3.6" rdflib==6.0.2; python_version >= "3.7" and python_version < "4" refgenconf==0.12.2 repoze.lru==0.7 @@ -145,10 +144,10 @@ sniffio==1.2.0; python_version >= "3.7" and python_full_version >= "3.6.2" social-auth-core==4.0.3 sortedcontainers==2.4.0 sqlalchemy-migrate==0.13.0 -sqlalchemy==1.4.37; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.6.0") +sqlalchemy==1.4.39; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.6.0") sqlitedict==2.0.0 sqlparse==0.4.2; python_version >= "3.5" -starlette-context==0.3.3; python_version >= "3.7" +starlette-context==0.3.4; python_version >= "3.7" starlette==0.19.1; python_version >= "3.6" supervisor==4.2.4; python_version >= "3.6" svgwrite==1.4.2; python_version >= "3.6" @@ -162,7 +161,7 @@ typing-extensions==4.2.0; python_version >= "3.7" tzlocal==2.1; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4" ubiquerg==0.6.2 urllib3==1.26.9; python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "4" and (python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4") or python_full_version >= "3.5.0" and python_version < "4" and python_version >= "3.7" and (python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4") -uvicorn==0.17.6; python_version >= "3.7" +uvicorn==0.18.1; python_version >= "3.7" uvloop==0.16.0; python_version >= "3.7" vine==5.0.0; python_version >= "3.7" wcwidth==0.2.5; python_full_version >= "3.6.2" and python_version >= "3.7"