add mvp viz

This commit is contained in:
Helena Rasche
2020-11-05 19:18:05 +01:00
committed by mvdbeek
parent 2837fa985b
commit b6cfa36fe1
2 changed files with 19 additions and 3 deletions
+19 -3
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@@ -99,9 +99,25 @@ New Visualizations
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.. visualizations
* Add galaxyp MVP visualization plugin
(thanks to `@tmcgowan <https://github.com/tmcgowan>`__).
`Pull Request 10136`_
GalaxyP MVP visualization plugin (thanks to `@tmcgowan <https://github.com/tmcgowan>`__). `Pull Request 10136`_
.. figure:: images/20.09-mvp.png
:alt: Screenshot of the MVP visualisation. Described below.
From their associated paper:
[The MVP App] displays this example data where the list of variant peptides
are shown in the Peptide Overview window (A). One of these peptides
(sequence DGDLENPVLYSGAVK) has been selected in this list, and the button
“PSMs for Selected Peptides” clicked to display the 2 PSMs that matched to
this sequence, along with associated scoring metrics (B). Double-clicking
on one of these PSMs opens the Lorikeet MS/MS viewer (C). Lorikeet [29]
renders MS/MS spectra, providing a visualization of the annotated spectra
that led to a PSM using the upstream sequence database searching software.
C shows an example PSM, where the blue- and red-colored m/z peak
values correspond to amino acid fragments that would be predicted to derive
from the peptide sequence identified by this PSM
New Datatypes
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