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add mvp viz
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@@ -99,9 +99,25 @@ New Visualizations
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===========================================================
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.. visualizations
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* Add galaxyp MVP visualization plugin
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(thanks to `@tmcgowan <https://github.com/tmcgowan>`__).
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`Pull Request 10136`_
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GalaxyP MVP visualization plugin (thanks to `@tmcgowan <https://github.com/tmcgowan>`__). `Pull Request 10136`_
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.. figure:: images/20.09-mvp.png
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:alt: Screenshot of the MVP visualisation. Described below.
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From their associated paper:
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[The MVP App] displays this example data where the list of variant peptides
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are shown in the Peptide Overview window (A). One of these peptides
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(sequence DGDLENPVLYSGAVK) has been selected in this list, and the button
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“PSMs for Selected Peptides” clicked to display the 2 PSMs that matched to
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this sequence, along with associated scoring metrics (B). Double-clicking
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on one of these PSMs opens the Lorikeet MS/MS viewer (C). Lorikeet [29]
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renders MS/MS spectra, providing a visualization of the annotated spectra
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that led to a PSM using the upstream sequence database searching software.
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C shows an example PSM, where the blue- and red-colored m/z peak
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values correspond to amino acid fragments that would be predicted to derive
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from the peptide sequence identified by this PSM
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New Datatypes
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