diff --git a/config/plugins/visualizations/scatterplot/src/scatterplot-config-editor.js b/config/plugins/visualizations/scatterplot/src/scatterplot-config-editor.js index 92cf63e5d00..29c1f00e604 100644 --- a/config/plugins/visualizations/scatterplot/src/scatterplot-config-editor.js +++ b/config/plugins/visualizations/scatterplot/src/scatterplot-config-editor.js @@ -29,7 +29,7 @@ todo: * configuring which data will be used * configuring the plot display */ -var ScatterplotConfigEditor = Backbone.View.extend( LoggableMixin ).extend({ +var ScatterplotConfigEditor = Backbone.View.extend({ //TODO: !should be a view on a visualization model //logger : console, className : 'scatterplot-control-form', @@ -39,13 +39,13 @@ var ScatterplotConfigEditor = Backbone.View.extend( LoggableMixin ).extend({ if( !this.model ){ this.model = new Visualization({ type: 'scatterplot' }); } - this.log( this + '.initialize, attributes:', attributes ); + //this.log( this + '.initialize, attributes:', attributes ); if( !attributes || !attributes.dataset ){ throw new Error( "ScatterplotConfigEditor requires a dataset" ); } this.dataset = attributes.dataset; - this.log( 'dataset:', this.dataset ); + //this.log( 'dataset:', this.dataset ); this.display = new ScatterplotDisplay({ dataset : attributes.dataset, diff --git a/config/plugins/visualizations/scatterplot/static/scatterplot-edit.js b/config/plugins/visualizations/scatterplot/static/scatterplot-edit.js index 0343fa65e3b..61b2c6b9a86 100644 --- a/config/plugins/visualizations/scatterplot/static/scatterplot-edit.js +++ b/config/plugins/visualizations/scatterplot/static/scatterplot-edit.js @@ -1 +1 @@ -function scatterplot(a,b,c){function d(){var a={v:{},h:{}};return a.v.lines=p.selectAll("line.v-grid-line").data(m.x.ticks(q.x.fn.ticks()[0])),a.v.lines.enter().append("svg:line").classed("grid-line v-grid-line",!0),a.v.lines.attr("x1",m.x).attr("x2",m.x).attr("y1",0).attr("y2",b.height),a.v.lines.exit().remove(),a.h.lines=p.selectAll("line.h-grid-line").data(m.y.ticks(q.y.fn.ticks()[0])),a.h.lines.enter().append("svg:line").classed("grid-line h-grid-line",!0),a.h.lines.attr("x1",0).attr("x2",b.width).attr("y1",m.y).attr("y2",m.y),a.h.lines.exit().remove(),a}function e(){return t.attr("cx",function(a,b){return m.x(j(a,b))}).attr("cy",function(a,b){return m.y(k(a,b))}).style("display","block").filter(function(){var a=d3.select(this).attr("cx"),c=d3.select(this).attr("cy");return 0>a||a>b.width?!0:0>c||c>b.height?!0:!1}).style("display","none")}function f(){$(".chart-info-box").remove(),q.redraw(),e(),s=d(),$(o.node()).trigger("zoom.scatterplot",{scale:n.scale(),translate:n.translate()})}function g(a,c,d){return c+=8,$(['
',void 0!==b.idColumn?"
"+d[b.idColumn]+"
":"","
",j(d),"
","
",k(d),"
","
"].join("")).css({top:a,left:c,"z-index":2})}var h=function(a,b){return"translate("+a+","+b+")"},i=function(a,b,c){return"rotate("+a+","+b+","+c+")"},j=function(a){return a[b.xColumn]},k=function(a){return a[b.yColumn]},l={x:{extent:d3.extent(c,j)},y:{extent:d3.extent(c,k)}},m={x:d3.scale.linear().domain(l.x.extent).range([0,b.width]),y:d3.scale.linear().domain(l.y.extent).range([b.height,0])},n=d3.behavior.zoom().x(m.x).y(m.y).scaleExtent([1,30]).scale(b.scale||1).translate(b.translate||[0,0]),o=d3.select(a).attr("class","scatterplot").attr("width","100%").attr("height",b.height+(b.margin.top+b.margin.bottom)),p=o.append("g").attr("class","content").attr("transform",h(b.margin.left,b.margin.top)).call(n);p.append("rect").attr("class","zoom-rect").attr("width",b.width).attr("height",b.height).style("fill","transparent");var q={x:{},y:{}};q.x.fn=d3.svg.axis().orient("bottom").scale(m.x).ticks(b.xTicks).tickFormat(d3.format("s")),q.y.fn=d3.svg.axis().orient("left").scale(m.y).ticks(b.yTicks).tickFormat(d3.format("s")),q.x.g=p.append("g").attr("class","x axis").attr("transform",h(0,b.height)).call(q.x.fn),q.y.g=p.append("g").attr("class","y axis").call(q.y.fn);var r=6;q.x.label=o.append("text").attr("id","x-axis-label").attr("class","axis-label").text(b.xLabel).attr("text-anchor","middle").attr("dominant-baseline","text-after-edge").attr("x",b.width/2+b.margin.left).attr("y",b.height+b.margin.bottom+b.margin.top-r),q.y.label=o.append("text").attr("id","y-axis-label").attr("class","axis-label").text(b.yLabel).attr("text-anchor","middle").attr("dominant-baseline","text-before-edge").attr("x",r).attr("y",b.height/2).attr("transform",i(-90,r,b.height/2)),q.redraw=function(){o.select(".x.axis").call(q.x.fn),o.select(".y.axis").call(q.y.fn)};var s=d(),t=p.selectAll(".glyph").data(c).enter().append("svg:circle").classed("glyph",!0).attr("cx",function(a,b){return m.x(j(a,b))}).attr("cy",function(a,b){return m.y(k(a,b))}).attr("r",0);t.transition().duration(b.animDuration).attr("r",b.datapointSize),e(),n.on("zoom",f),t.on("mouseover",function(a,c){var d=d3.select(this);d.classed("highlight",!0).style("fill","red").style("fill-opacity",1),p.append("line").attr("stroke","red").attr("stroke-width",1).attr("x1",d.attr("cx")-b.datapointSize).attr("y1",d.attr("cy")).attr("x2",0).attr("y2",d.attr("cy")).classed("hoverline",!0),d.attr("cy")= 1.0.0"],c=this.merge(c,a.helpers),e=e||{};var f,g="",h="function",i=this.escapeExpression;return g+='

\n Use the following controls to how the chart is displayed.\n The slide controls can be moved by the mouse or, if the \'handle\' is in focus, your keyboard\'s arrow keys.\n Move the focus between controls by using the tab or shift+tab keys on your keyboard.\n Use the \'Draw\' button to render (or re-render) the chart with the current settings.\n

\n\n
\n \n
',(f=c.datapointSize)?f=f.call(b,{hash:{},data:e}):(f=b.datapointSize,f=typeof f===h?f.apply(b):f),g+=i(f)+'
\n
\n

\n Size of the graphic representation of each data point\n

\n
\n\n
\n \n
',(f=c.width)?f=f.call(b,{hash:{},data:e}):(f=b.width,f=typeof f===h?f.apply(b):f),g+=i(f)+'
\n
\n

\n (not including chart margins and axes)\n

\n
\n\n
\n \n
',(f=c.height)?f=f.call(b,{hash:{},data:e}):(f=b.height,f=typeof f===h?f.apply(b):f),g+=i(f)+'
\n
\n

\n (not including chart margins and axes)\n

\n
\n\n
\n \n \n

\n
\n\n
\n \n \n

\n
\n\n\n'}),this.scatterplot.datacontrol=Handlebars.template(function(a,b,c,d,e){this.compilerInfo=[4,">= 1.0.0"],c=this.merge(c,a.helpers),e=e||{};var f,g="",h="function";return g+='

\n Use the following control to change which columns are used by the chart. Click any cell\n from the last three rows of the table to select the column for the appropriate data.\n Use the \'Draw\' button to render (or re-render) the chart with the current settings.\n

\n\n\n\n
\n 
',(f=c.peek)?f=f.call(b,{hash:{},data:e}):(f=b.peek,f=typeof f===h?f.apply(b):f),(f||0===f)&&(g+=f),g+='
\n
\n\n

\n Note: If it can be determined from the dataset\'s filetype that a column is not numeric,\n that column choice may be disabled for either the x or y axis.\n

\n\n\n'}),this.scatterplot.editor=Handlebars.template(function(a,b,c,d,e){this.compilerInfo=[4,">= 1.0.0"],c=this.merge(c,a.helpers),e=e||{};var f="";return f+='
\n \n \n\n \n
\n \n
\n \n
\n \n \n
\n \n
\n\n \n
\n\n
\n
\n'});var ScatterplotConfigEditor=Backbone.View.extend(LoggableMixin).extend({className:"scatterplot-control-form",initialize:function(a){if(this.model||(this.model=new Visualization({type:"scatterplot"})),this.log(this+".initialize, attributes:",a),!a||!a.dataset)throw new Error("ScatterplotConfigEditor requires a dataset");this.dataset=a.dataset,this.log("dataset:",this.dataset),this.display=new ScatterplotDisplay({dataset:a.dataset,model:this.model})},render:function(){this.$el.empty().append(ScatterplotConfigEditor.templates.mainLayout({})),this.model.id&&(this.$el.find(".copy-btn").show(),this.$el.find(".save-btn").text("Update saved")),this.$el.find("[title]").tooltip(),this._render_dataControl(),this._render_chartControls(),this._render_chartDisplay();var a=this.model.get("config");return this.model.id&&_.isFinite(a.xColumn)&&_.isFinite(a.yColumn)&&this.renderChart(),this},_getColumnIndecesByType:function(){var a={numeric:[],text:[],all:[]};return _.each(this.dataset.metadata_column_types||[],function(b,c){"int"===b||"float"===b?a.numeric.push(c):("str"===b||"list"===b)&&a.text.push(c),a.all.push(c)}),a.numeric.length<2&&(a.numeric=[]),a},_render_dataControl:function(a){a=a||this.$el;var b=this,c=this.model.get("config"),d=this._getColumnIndecesByType(),e=a.find(".tab-pane#data-control");return e.html(ScatterplotConfigEditor.templates.dataControl({peek:this.dataset.peek})),e.find(".peek").peekControl({controls:[{label:"X Column",id:"xColumn",selected:c.xColumn,disabled:d.text},{label:"Y Column",id:"yColumn",selected:c.yColumn,disabled:d.text},{label:"ID Column",id:"idColumn",selected:c.idColumn}]}).on("peek-control.change",function(a,c){b.model.set("config",c)}).on("peek-control.rename",function(){}),e.find("[title]").tooltip(),e},_render_chartControls:function(a){function b(){var a=$(this),b=a.slider("value");c.model.set("config",_.object([[a.parent().data("config-key"),b]])),a.siblings(".slider-output").text(b)}a=a||this.$el;var c=this,d=this.model.get("config"),e=a.find("#chart-control");e.html(ScatterplotConfigEditor.templates.chartControl(d));var f={datapointSize:{min:2,max:10,step:1},width:{min:200,max:800,step:20},height:{min:200,max:800,step:20}};e.find(".numeric-slider-input").each(function(){var a=$(this),c=a.attr("data-config-key"),e=_.extend(f[c],{value:d[c],change:b,slide:b});a.find(".slider").slider(e),a.children(".slider-output").text(d[c])});var g=this.dataset.metadata_column_names||[],h=d.xLabel||g[d.xColumn]||"X",i=d.yLabel||g[d.yColumn]||"Y";return e.find('input[name="X-axis-label"]').val(h).on("change",function(){c.model.set("config",{xLabel:$(this).val()})}),e.find('input[name="Y-axis-label"]').val(i).on("change",function(){c.model.set("config",{yLabel:$(this).val()})}),e.find("[title]").tooltip(),e},_render_chartDisplay:function(a){a=a||this.$el;var b=a.find(".tab-pane#chart-display");return this.display.setElement(b),this.display.render(),b.find("[title]").tooltip(),b},events:{"change #include-id-checkbox":"toggleThirdColumnSelector","click #data-control .render-button":"renderChart","click #chart-control .render-button":"renderChart","click .save-btn":"saveVisualization"},saveVisualization:function(){var a=this;this.model.save().fail(function(b,c,d){console.error(b,c,d),a.trigger("save:error",view),alert("Error loading data:\n"+b.responseText)}).then(function(){a.display.render()})},toggleThirdColumnSelector:function(){this.$el.find('select[name="idColumn"]').parent().toggle()},renderChart:function(){this.$el.find(".nav li.disabled").removeClass("disabled"),this.$el.find("ul.nav").find('a[href="#chart-display"]').tab("show"),this.display.fetchData()},toString:function(){return"ScatterplotConfigEditor("+(this.dataset?this.dataset.id:"")+")"}});ScatterplotConfigEditor.templates={mainLayout:scatterplot.editor,dataControl:scatterplot.datacontrol,chartControl:scatterplot.chartcontrol};var ScatterplotDisplay=Backbone.View.extend({initialize:function(a){this.data=null,this.dataset=a.dataset,this.lineCount=this.dataset.metadata_data_lines||null},fetchData:function(){this.showLoadingIndicator();var a=this,b=this.model.get("config"),c=jQuery.getJSON("/api/datasets/"+this.dataset.id,{data_type:"raw_data",provider:"dataset-column",limit:b.pagination.perPage,offset:b.pagination.currPage*b.pagination.perPage});return c.done(function(b){a.data=b.data,a.trigger("data:fetched",a),a.renderData()}),c.fail(function(b,c,d){console.error(b,c,d),a.trigger("data:error",a),alert("Error loading data:\n"+b.responseText)}),c},showLoadingIndicator:function(){this.$el.find(".scatterplot-data-info").html(['
','','loading...',"
"].join(""))},template:function(){var a=['
','
','

','','',"
",'
','
',"
","
","",'
'].join("");return a},render:function(){return this.$el.addClass("scatterplot-display").html(this.template()),this.data&&this.renderData(),this},renderData:function(){this.renderLeftControls(),this.renderRightControls(),this.renderPlot(this.data),this.getStats()},renderLeftControls:function(){var a=this,b=this.model.get("config");return this.$el.find(".controls .left .page-control").pagination({startingPage:b.pagination.currPage,perPage:b.pagination.perPage,totalDataSize:this.lineCount,currDataSize:this.data.length}).off().on("pagination.page-change",function(c,d){b.pagination.currPage=d,a.model.set("config",{pagination:b.pagination}),a.resetZoom(),a.fetchData()}),this},renderRightControls:function(){var a=this;this.setLineInfo(this.data),this.$el.find(".stats-toggle-btn").off().click(function(){a.toggleStats()}),this.$el.find(".rerender-btn").off().click(function(){a.resetZoom(),a.renderPlot(this.data)})},renderPlot:function(){var a=this,b=this.$el.find("svg");this.toggleStats(!1),b.off().empty().show().on("zoom.scatterplot",function(b,c){a.model.set("config",c)}),scatterplot(b.get(0),this.model.get("config"),this.data)},setLineInfo:function(a,b){if(a){var c=this.model.get("config"),d=this.lineCount||"an unknown total",e=c.pagination.currPage*c.pagination.perPage,f=e+a.length;this.$el.find(".controls p.scatterplot-data-info").text([e+1,"to",f,"of",d].join(" "))}else this.$el.find(".controls p.scatterplot-data-info").html(b||"");return this},resetZoom:function(a,b){return a=void 0!==a?a:1,b=void 0!==b?b:[0,0],this.model.set("config",{scale:a,translate:b}),this},getStats:function(){if(this.data){var a=this,b=this.model.get("config"),c=new Worker("/plugins/visualizations/scatterplot/static/worker-stats.js");c.postMessage({data:this.data,keys:[b.xColumn,b.yColumn]}),c.onerror=function(){c.terminate()},c.onmessage=function(b){a.renderStats(b.data)}}},renderStats:function(a){var b=this.model.get("config"),c=this.$el.find(".stats-display"),d=b.xLabel,e=b.yLabel,f=$("").addClass("table").append([""].join("")).append(_.map(a,function(a,b){return $([""].join(""))}));c.empty().append(f)},toggleStats:function(a){var b=this.$el.find(".stats-display");a=void 0===a?b.is(":hidden"):a,a?(this.$el.find("svg").hide(),b.show(),this.$el.find(".controls .stats-toggle-btn").text("Plot")):(b.hide(),this.$el.find("svg").show(),this.$el.find(".controls .stats-toggle-btn").text("Stats"))},toString:function(){return"ScatterplotView()"}}),ScatterplotModel=Visualization.extend({defaults:{type:"scatterplot",config:{pagination:{currPage:0,perPage:3e3},width:400,height:400,margin:{top:16,right:16,bottom:40,left:54},xTicks:10,xLabel:"X",yTicks:10,yLabel:"Y",datapointSize:4,animDuration:500,scale:1,translate:[0,0]}}}); \ No newline at end of file +function scatterplot(a,b,c){function d(){var a={v:{},h:{}};return a.v.lines=p.selectAll("line.v-grid-line").data(m.x.ticks(q.x.fn.ticks()[0])),a.v.lines.enter().append("svg:line").classed("grid-line v-grid-line",!0),a.v.lines.attr("x1",m.x).attr("x2",m.x).attr("y1",0).attr("y2",b.height),a.v.lines.exit().remove(),a.h.lines=p.selectAll("line.h-grid-line").data(m.y.ticks(q.y.fn.ticks()[0])),a.h.lines.enter().append("svg:line").classed("grid-line h-grid-line",!0),a.h.lines.attr("x1",0).attr("x2",b.width).attr("y1",m.y).attr("y2",m.y),a.h.lines.exit().remove(),a}function e(){return t.attr("cx",function(a,b){return m.x(j(a,b))}).attr("cy",function(a,b){return m.y(k(a,b))}).style("display","block").filter(function(){var a=d3.select(this).attr("cx"),c=d3.select(this).attr("cy");return 0>a||a>b.width?!0:0>c||c>b.height?!0:!1}).style("display","none")}function f(){$(".chart-info-box").remove(),q.redraw(),e(),s=d(),$(o.node()).trigger("zoom.scatterplot",{scale:n.scale(),translate:n.translate()})}function g(a,c,d){return c+=8,$(['
',void 0!==b.idColumn?"
"+d[b.idColumn]+"
":"","
",j(d),"
","
",k(d),"
","
"].join("")).css({top:a,left:c,"z-index":2})}var h=function(a,b){return"translate("+a+","+b+")"},i=function(a,b,c){return"rotate("+a+","+b+","+c+")"},j=function(a){return a[b.xColumn]},k=function(a){return a[b.yColumn]},l={x:{extent:d3.extent(c,j)},y:{extent:d3.extent(c,k)}},m={x:d3.scale.linear().domain(l.x.extent).range([0,b.width]),y:d3.scale.linear().domain(l.y.extent).range([b.height,0])},n=d3.behavior.zoom().x(m.x).y(m.y).scaleExtent([1,30]).scale(b.scale||1).translate(b.translate||[0,0]),o=d3.select(a).attr("class","scatterplot").attr("width","100%").attr("height",b.height+(b.margin.top+b.margin.bottom)),p=o.append("g").attr("class","content").attr("transform",h(b.margin.left,b.margin.top)).call(n);p.append("rect").attr("class","zoom-rect").attr("width",b.width).attr("height",b.height).style("fill","transparent");var q={x:{},y:{}};q.x.fn=d3.svg.axis().orient("bottom").scale(m.x).ticks(b.xTicks).tickFormat(d3.format("s")),q.y.fn=d3.svg.axis().orient("left").scale(m.y).ticks(b.yTicks).tickFormat(d3.format("s")),q.x.g=p.append("g").attr("class","x axis").attr("transform",h(0,b.height)).call(q.x.fn),q.y.g=p.append("g").attr("class","y axis").call(q.y.fn);var r=6;q.x.label=o.append("text").attr("id","x-axis-label").attr("class","axis-label").text(b.xLabel).attr("text-anchor","middle").attr("dominant-baseline","text-after-edge").attr("x",b.width/2+b.margin.left).attr("y",b.height+b.margin.bottom+b.margin.top-r),q.y.label=o.append("text").attr("id","y-axis-label").attr("class","axis-label").text(b.yLabel).attr("text-anchor","middle").attr("dominant-baseline","text-before-edge").attr("x",r).attr("y",b.height/2).attr("transform",i(-90,r,b.height/2)),q.redraw=function(){o.select(".x.axis").call(q.x.fn),o.select(".y.axis").call(q.y.fn)};var s=d(),t=p.selectAll(".glyph").data(c).enter().append("svg:circle").classed("glyph",!0).attr("cx",function(a,b){return m.x(j(a,b))}).attr("cy",function(a,b){return m.y(k(a,b))}).attr("r",0);t.transition().duration(b.animDuration).attr("r",b.datapointSize),e(),n.on("zoom",f),t.on("mouseover",function(a,c){var d=d3.select(this);d.classed("highlight",!0).style("fill","red").style("fill-opacity",1),p.append("line").attr("stroke","red").attr("stroke-width",1).attr("x1",d.attr("cx")-b.datapointSize).attr("y1",d.attr("cy")).attr("x2",0).attr("y2",d.attr("cy")).classed("hoverline",!0),d.attr("cy")= 1.0.0"],c=this.merge(c,a.helpers),e=e||{};var f,g="",h="function",i=this.escapeExpression;return g+='

\n Use the following controls to how the chart is displayed.\n The slide controls can be moved by the mouse or, if the \'handle\' is in focus, your keyboard\'s arrow keys.\n Move the focus between controls by using the tab or shift+tab keys on your keyboard.\n Use the \'Draw\' button to render (or re-render) the chart with the current settings.\n

\n\n
\n \n
',(f=c.datapointSize)?f=f.call(b,{hash:{},data:e}):(f=b.datapointSize,f=typeof f===h?f.apply(b):f),g+=i(f)+'
\n
\n

\n Size of the graphic representation of each data point\n

\n
\n\n
\n \n
',(f=c.width)?f=f.call(b,{hash:{},data:e}):(f=b.width,f=typeof f===h?f.apply(b):f),g+=i(f)+'
\n
\n

\n (not including chart margins and axes)\n

\n
\n\n
\n \n
',(f=c.height)?f=f.call(b,{hash:{},data:e}):(f=b.height,f=typeof f===h?f.apply(b):f),g+=i(f)+'
\n
\n

\n (not including chart margins and axes)\n

\n
\n\n
\n \n \n

\n
\n\n
\n \n \n

\n
\n\n\n'}),this.scatterplot.datacontrol=Handlebars.template(function(a,b,c,d,e){this.compilerInfo=[4,">= 1.0.0"],c=this.merge(c,a.helpers),e=e||{};var f,g="",h="function";return g+='

\n Use the following control to change which columns are used by the chart. Click any cell\n from the last three rows of the table to select the column for the appropriate data.\n Use the \'Draw\' button to render (or re-render) the chart with the current settings.\n

\n\n\n\n
\n 
',(f=c.peek)?f=f.call(b,{hash:{},data:e}):(f=b.peek,f=typeof f===h?f.apply(b):f),(f||0===f)&&(g+=f),g+='
\n
\n\n

\n Note: If it can be determined from the dataset\'s filetype that a column is not numeric,\n that column choice may be disabled for either the x or y axis.\n

\n\n\n'}),this.scatterplot.editor=Handlebars.template(function(a,b,c,d,e){this.compilerInfo=[4,">= 1.0.0"],c=this.merge(c,a.helpers),e=e||{};var f="";return f+='
\n \n \n\n \n
\n \n
\n \n
\n \n \n
\n \n
\n\n \n
\n\n
\n
\n'});var ScatterplotConfigEditor=Backbone.View.extend({className:"scatterplot-control-form",initialize:function(a){if(this.model||(this.model=new Visualization({type:"scatterplot"})),!a||!a.dataset)throw new Error("ScatterplotConfigEditor requires a dataset");this.dataset=a.dataset,this.display=new ScatterplotDisplay({dataset:a.dataset,model:this.model})},render:function(){this.$el.empty().append(ScatterplotConfigEditor.templates.mainLayout({})),this.model.id&&(this.$el.find(".copy-btn").show(),this.$el.find(".save-btn").text("Update saved")),this.$el.find("[title]").tooltip(),this._render_dataControl(),this._render_chartControls(),this._render_chartDisplay();var a=this.model.get("config");return this.model.id&&_.isFinite(a.xColumn)&&_.isFinite(a.yColumn)&&this.renderChart(),this},_getColumnIndecesByType:function(){var a={numeric:[],text:[],all:[]};return _.each(this.dataset.metadata_column_types||[],function(b,c){"int"===b||"float"===b?a.numeric.push(c):("str"===b||"list"===b)&&a.text.push(c),a.all.push(c)}),a.numeric.length<2&&(a.numeric=[]),a},_render_dataControl:function(a){a=a||this.$el;var b=this,c=this.model.get("config"),d=this._getColumnIndecesByType(),e=a.find(".tab-pane#data-control");return e.html(ScatterplotConfigEditor.templates.dataControl({peek:this.dataset.peek})),e.find(".peek").peekControl({controls:[{label:"X Column",id:"xColumn",selected:c.xColumn,disabled:d.text},{label:"Y Column",id:"yColumn",selected:c.yColumn,disabled:d.text},{label:"ID Column",id:"idColumn",selected:c.idColumn}]}).on("peek-control.change",function(a,c){b.model.set("config",c)}).on("peek-control.rename",function(){}),e.find("[title]").tooltip(),e},_render_chartControls:function(a){function b(){var a=$(this),b=a.slider("value");c.model.set("config",_.object([[a.parent().data("config-key"),b]])),a.siblings(".slider-output").text(b)}a=a||this.$el;var c=this,d=this.model.get("config"),e=a.find("#chart-control");e.html(ScatterplotConfigEditor.templates.chartControl(d));var f={datapointSize:{min:2,max:10,step:1},width:{min:200,max:800,step:20},height:{min:200,max:800,step:20}};e.find(".numeric-slider-input").each(function(){var a=$(this),c=a.attr("data-config-key"),e=_.extend(f[c],{value:d[c],change:b,slide:b});a.find(".slider").slider(e),a.children(".slider-output").text(d[c])});var g=this.dataset.metadata_column_names||[],h=d.xLabel||g[d.xColumn]||"X",i=d.yLabel||g[d.yColumn]||"Y";return e.find('input[name="X-axis-label"]').val(h).on("change",function(){c.model.set("config",{xLabel:$(this).val()})}),e.find('input[name="Y-axis-label"]').val(i).on("change",function(){c.model.set("config",{yLabel:$(this).val()})}),e.find("[title]").tooltip(),e},_render_chartDisplay:function(a){a=a||this.$el;var b=a.find(".tab-pane#chart-display");return this.display.setElement(b),this.display.render(),b.find("[title]").tooltip(),b},events:{"change #include-id-checkbox":"toggleThirdColumnSelector","click #data-control .render-button":"renderChart","click #chart-control .render-button":"renderChart","click .save-btn":"saveVisualization"},saveVisualization:function(){var a=this;this.model.save().fail(function(b,c,d){console.error(b,c,d),a.trigger("save:error",view),alert("Error loading data:\n"+b.responseText)}).then(function(){a.display.render()})},toggleThirdColumnSelector:function(){this.$el.find('select[name="idColumn"]').parent().toggle()},renderChart:function(){this.$el.find(".nav li.disabled").removeClass("disabled"),this.$el.find("ul.nav").find('a[href="#chart-display"]').tab("show"),this.display.fetchData()},toString:function(){return"ScatterplotConfigEditor("+(this.dataset?this.dataset.id:"")+")"}});ScatterplotConfigEditor.templates={mainLayout:scatterplot.editor,dataControl:scatterplot.datacontrol,chartControl:scatterplot.chartcontrol};var ScatterplotDisplay=Backbone.View.extend({initialize:function(a){this.data=null,this.dataset=a.dataset,this.lineCount=this.dataset.metadata_data_lines||null},fetchData:function(){this.showLoadingIndicator();var a=this,b=this.model.get("config"),c=jQuery.getJSON("/api/datasets/"+this.dataset.id,{data_type:"raw_data",provider:"dataset-column",limit:b.pagination.perPage,offset:b.pagination.currPage*b.pagination.perPage});return c.done(function(b){a.data=b.data,a.trigger("data:fetched",a),a.renderData()}),c.fail(function(b,c,d){console.error(b,c,d),a.trigger("data:error",a),alert("Error loading data:\n"+b.responseText)}),c},showLoadingIndicator:function(){this.$el.find(".scatterplot-data-info").html(['
','','loading...',"
"].join(""))},template:function(){var a=['
','
','

','','',"
",'
','
',"
","
","",'
'].join("");return a},render:function(){return this.$el.addClass("scatterplot-display").html(this.template()),this.data&&this.renderData(),this},renderData:function(){this.renderLeftControls(),this.renderRightControls(),this.renderPlot(this.data),this.getStats()},renderLeftControls:function(){var a=this,b=this.model.get("config");return this.$el.find(".controls .left .page-control").pagination({startingPage:b.pagination.currPage,perPage:b.pagination.perPage,totalDataSize:this.lineCount,currDataSize:this.data.length}).off().on("pagination.page-change",function(c,d){b.pagination.currPage=d,a.model.set("config",{pagination:b.pagination}),a.resetZoom(),a.fetchData()}),this},renderRightControls:function(){var a=this;this.setLineInfo(this.data),this.$el.find(".stats-toggle-btn").off().click(function(){a.toggleStats()}),this.$el.find(".rerender-btn").off().click(function(){a.resetZoom(),a.renderPlot(this.data)})},renderPlot:function(){var a=this,b=this.$el.find("svg");this.toggleStats(!1),b.off().empty().show().on("zoom.scatterplot",function(b,c){a.model.set("config",c)}),scatterplot(b.get(0),this.model.get("config"),this.data)},setLineInfo:function(a,b){if(a){var c=this.model.get("config"),d=this.lineCount||"an unknown total",e=c.pagination.currPage*c.pagination.perPage,f=e+a.length;this.$el.find(".controls p.scatterplot-data-info").text([e+1,"to",f,"of",d].join(" "))}else this.$el.find(".controls p.scatterplot-data-info").html(b||"");return this},resetZoom:function(a,b){return a=void 0!==a?a:1,b=void 0!==b?b:[0,0],this.model.set("config",{scale:a,translate:b}),this},getStats:function(){if(this.data){var a=this,b=this.model.get("config"),c=new Worker("/plugins/visualizations/scatterplot/static/worker-stats.js");c.postMessage({data:this.data,keys:[b.xColumn,b.yColumn]}),c.onerror=function(){c.terminate()},c.onmessage=function(b){a.renderStats(b.data)}}},renderStats:function(a){var b=this.model.get("config"),c=this.$el.find(".stats-display"),d=b.xLabel,e=b.yLabel,f=$("
",d,"",e,"
",b,"",a[0],"",a[1],"
").addClass("table").append([""].join("")).append(_.map(a,function(a,b){return $([""].join(""))}));c.empty().append(f)},toggleStats:function(a){var b=this.$el.find(".stats-display");a=void 0===a?b.is(":hidden"):a,a?(this.$el.find("svg").hide(),b.show(),this.$el.find(".controls .stats-toggle-btn").text("Plot")):(b.hide(),this.$el.find("svg").show(),this.$el.find(".controls .stats-toggle-btn").text("Stats"))},toString:function(){return"ScatterplotView()"}}),ScatterplotModel=Visualization.extend({defaults:{type:"scatterplot",config:{pagination:{currPage:0,perPage:3e3},width:400,height:400,margin:{top:16,right:16,bottom:40,left:54},xTicks:10,xLabel:"X",yTicks:10,yLabel:"Y",datapointSize:4,animDuration:500,scale:1,translate:[0,0]}}}); \ No newline at end of file diff --git a/config/plugins/visualizations/scatterplot/templates/scatterplot.mako b/config/plugins/visualizations/scatterplot/templates/scatterplot.mako index 08e26b0cf2f..b03fde73834 100644 --- a/config/plugins/visualizations/scatterplot/templates/scatterplot.mako +++ b/config/plugins/visualizations/scatterplot/templates/scatterplot.mako @@ -32,7 +32,6 @@ ${h.js( 'libs/jquery/jquery', 'libs/backbone/backbone', 'libs/d3', 'libs/handlebars.runtime', - 'mvc/base-mvc', 'mvc/ui', 'mvc/visualization/visualization-model' )} diff --git a/static/scripts/mvc/annotations.js b/static/scripts/mvc/annotations.js index 7a86029f7be..b85cd7a6f17 100644 --- a/static/scripts/mvc/annotations.js +++ b/static/scripts/mvc/annotations.js @@ -1,9 +1,12 @@ define([ -], function(){ + "mvc/base-mvc" +], function( baseMVC ){ // ============================================================================= /** A view on any model that has a 'annotation' attribute */ -var AnnotationEditor = Backbone.View.extend( LoggableMixin ).extend( HiddenUntilActivatedViewMixin ).extend({ +var AnnotationEditor = Backbone.View + .extend( baseMVC.LoggableMixin ) + .extend( baseMVC.HiddenUntilActivatedViewMixin ).extend({ tagName : 'div', className : 'annotation-display', diff --git a/static/scripts/mvc/base-mvc.js b/static/scripts/mvc/base-mvc.js index 6a8bdeb5386..b73396aedb7 100644 --- a/static/scripts/mvc/base-mvc.js +++ b/static/scripts/mvc/base-mvc.js @@ -1,3 +1,6 @@ +define([ +], function(){ +//ASSUMES: backbone //============================================================================== /** @class Mixin to add logging capabilities to an object. * Designed to allow switching an objects log output off/on at one central @@ -188,3 +191,10 @@ var HiddenUntilActivatedViewMixin = /** @lends hiddenUntilActivatedMixin# */{ return this.HUAVOptions.showFn.apply( this.HUAVOptions.$elementShown, arguments ); } }; + +//============================================================================== +return { + LoggableMixin : LoggableMixin, + SessionStorageModel : SessionStorageModel, + HiddenUntilActivatedViewMixin : HiddenUntilActivatedViewMixin +};}); diff --git a/static/scripts/mvc/dataset/hda-base.js b/static/scripts/mvc/dataset/hda-base.js index 60d9b6e5fef..79a23f110dd 100644 --- a/static/scripts/mvc/dataset/hda-base.js +++ b/static/scripts/mvc/dataset/hda-base.js @@ -1,7 +1,8 @@ define([ - "mvc/dataset/hda-model" -], function( hdaModel ){ -/* global Backbone, LoggableMixin, HistoryDatasetAssociation, HDABaseView */ + "mvc/dataset/hda-model", + "mvc/base-mvc" +], function( hdaModel, baseMVC ){ +/* global Backbone */ //============================================================================== /** @class Read only view for HistoryDatasetAssociation. * @name HDABaseView @@ -11,7 +12,7 @@ define([ * @borrows LoggableMixin#log as #log * @constructs */ -var HDABaseView = Backbone.View.extend( LoggableMixin ).extend( +var HDABaseView = Backbone.View.extend( baseMVC.LoggableMixin ).extend( /** @lends HDABaseView.prototype */{ ///** logger used to record this.log messages, commonly set to console */ diff --git a/static/scripts/mvc/dataset/hda-edit.js b/static/scripts/mvc/dataset/hda-edit.js index 95d0729d9f4..45dc9748ade 100644 --- a/static/scripts/mvc/dataset/hda-edit.js +++ b/static/scripts/mvc/dataset/hda-edit.js @@ -13,7 +13,7 @@ define([ * @borrows LoggableMixin#log as #log * @constructs */ -var HDAEditView = hdaBase.HDABaseView.extend( LoggableMixin ).extend( +var HDAEditView = hdaBase.HDABaseView.extend( /** @lends HDAEditView.prototype */{ // ......................................................................... set up diff --git a/static/scripts/mvc/dataset/hda-model.js b/static/scripts/mvc/dataset/hda-model.js index d38b00955c6..1761b07a52b 100644 --- a/static/scripts/mvc/dataset/hda-model.js +++ b/static/scripts/mvc/dataset/hda-model.js @@ -1,5 +1,6 @@ define([ -], function(){ + "mvc/base-mvc" +], function( baseMVC ){ //============================================================================== /** @class (HDA) model for a Galaxy dataset * related to a history. @@ -10,7 +11,7 @@ define([ * @borrows LoggableMixin#log as #log * @constructs */ -var HistoryDatasetAssociation = Backbone.Model.extend( LoggableMixin ).extend( +var HistoryDatasetAssociation = Backbone.Model.extend( baseMVC.LoggableMixin ).extend( /** @lends HistoryDatasetAssociation.prototype */{ ///** logger used to record this.log messages, commonly set to console */ @@ -401,7 +402,7 @@ HistoryDatasetAssociation.NOT_READY_STATES = [ * @borrows LoggableMixin#log as #log * @constructs */ -var HDACollection = Backbone.Collection.extend( LoggableMixin ).extend( +var HDACollection = Backbone.Collection.extend( baseMVC.LoggableMixin ).extend( /** @lends HDACollection.prototype */{ model : HistoryDatasetAssociation, diff --git a/static/scripts/mvc/history/current-history-panel.js b/static/scripts/mvc/history/current-history-panel.js index 29163feeaf3..b1bf29a9d06 100644 --- a/static/scripts/mvc/history/current-history-panel.js +++ b/static/scripts/mvc/history/current-history-panel.js @@ -1,11 +1,12 @@ define([ "mvc/dataset/hda-edit", - "mvc/history/history-panel" -], function( hdaEdit, hpanel ){ + "mvc/history/history-panel", + "mvc/base-mvc" +], function( hdaEdit, hpanel, baseMVC ){ // ============================================================================ /** session storage for history panel preferences (and to maintain state) */ -var HistoryPanelPrefs = SessionStorageModel.extend({ +var HistoryPanelPrefs = baseMVC.SessionStorageModel.extend({ defaults : { /** is the panel currently showing the search/filter controls? */ searching : false, diff --git a/static/scripts/mvc/history/history-model.js b/static/scripts/mvc/history/history-model.js index 7594ab7c2de..0b09f02f9fe 100644 --- a/static/scripts/mvc/history/history-model.js +++ b/static/scripts/mvc/history/history-model.js @@ -1,6 +1,7 @@ define([ - "mvc/dataset/hda-model" -], function( hdaModel ){ + "mvc/dataset/hda-model", + "mvc/base-mvc" +], function( hdaModel, baseMVC ){ //============================================================================== /** @class Model for a Galaxy history resource - both a record of user * tool use and a collection of the datasets those tools produced. @@ -11,7 +12,7 @@ define([ * @borrows LoggableMixin#log as #log * @constructs */ -var History = Backbone.Model.extend( LoggableMixin ).extend( +var History = Backbone.Model.extend( baseMVC.LoggableMixin ).extend( /** @lends History.prototype */{ ///** logger used to record this.log messages, commonly set to console */ @@ -114,13 +115,6 @@ var History = Backbone.Model.extend( LoggableMixin ).extend( }, // ........................................................................ common queries - /** is this model already associated with a user? */ -//TODO: remove - hasUser : function(){ - var user = this.get( 'user' ); - return !!( user && user.id ); - }, - /** T/F is this history owned by the current user (Galaxy.currUser) * Note: that this will return false for an anon user even if the history is theirs. */ @@ -295,7 +289,7 @@ History.getHistoryData = function getHistoryData( historyId, options ){ * @borrows LoggableMixin#log as #log * @constructs */ -var HistoryCollection = Backbone.Collection.extend( LoggableMixin ).extend( +var HistoryCollection = Backbone.Collection.extend( baseMVC.LoggableMixin ).extend( /** @lends HistoryCollection.prototype */{ model : History, urlRoot : galaxy_config.root + 'api/histories' diff --git a/static/scripts/mvc/history/history-panel.js b/static/scripts/mvc/history/history-panel.js index 0f9ab5e1615..77cc702a4a3 100644 --- a/static/scripts/mvc/history/history-panel.js +++ b/static/scripts/mvc/history/history-panel.js @@ -84,7 +84,7 @@ var HistoryPanel = readonlyPanel.ReadOnlyHistoryPanel.extend( $newRender.append( HistoryPanel.templates.historyPanel( this.model.toJSON() ) ); this.$emptyMessage( $newRender ).text( this.emptyMsg ); - if( Galaxy.currUser.id && Galaxy.currUser.id === this.model.get( 'user_id' ) ){ + if( Galaxy && Galaxy.currUser && Galaxy.currUser.id && Galaxy.currUser.id === this.model.get( 'user_id' ) ){ this._renderTags( $newRender ); this._renderAnnotation( $newRender ); } diff --git a/static/scripts/mvc/history/readonly-history-panel.js b/static/scripts/mvc/history/readonly-history-panel.js index e6a9b421b55..d3c0b2c1028 100644 --- a/static/scripts/mvc/history/readonly-history-panel.js +++ b/static/scripts/mvc/history/readonly-history-panel.js @@ -1,10 +1,11 @@ define([ "mvc/history/history-model", - "mvc/dataset/hda-base" -], function( historyModel, hdaBase ){ + "mvc/dataset/hda-base", + "mvc/base-mvc" +], function( historyModel, hdaBase, baseMVC ){ // ============================================================================ /** session storage for individual history preferences */ -var HistoryPrefs = SessionStorageModel.extend({ +var HistoryPrefs = baseMVC.SessionStorageModel.extend({ defaults : { //TODO:?? expandedHdas to array? expandedHdas : {}, @@ -71,7 +72,7 @@ TODO: * @borrows LoggableMixin#log as #log * @constructs */ -var ReadOnlyHistoryPanel = Backbone.View.extend( LoggableMixin ).extend( +var ReadOnlyHistoryPanel = Backbone.View.extend( baseMVC.LoggableMixin ).extend( /** @lends ReadOnlyHistoryPanel.prototype */{ /** logger used to record this.log messages, commonly set to console */ @@ -311,11 +312,11 @@ var ReadOnlyHistoryPanel = Backbone.View.extend( LoggableMixin ).extend( attributes = attributes || {}; //this.log( 'JSONToModel:', newHistoryJSON, newHdaJSON.length, attributes ); - // set up the new model and render - if( Galaxy && Galaxy.currUser ){ -//TODO: global - newHistoryJSON.user = Galaxy.currUser.toJSON(); - } +// // set up the new model and render +// if( Galaxy && Galaxy.currUser ){ +////TODO: global +// newHistoryJSON.user = Galaxy.currUser.toJSON(); +// } var model = new historyModel.History( newHistoryJSON, newHdaJSON, attributes ); this.setModel( model ); return this; @@ -334,10 +335,10 @@ var ReadOnlyHistoryPanel = Backbone.View.extend( LoggableMixin ).extend( if( model ){ // set up the new model with user, logger, storage, events - if( Galaxy && Galaxy.currUser ){ -//TODO: global - model.user = Galaxy.currUser.toJSON(); - } +// if( Galaxy && Galaxy.currUser ){ +////TODO: global +// model.user = Galaxy.currUser.toJSON(); +// } this.model = model; if( this.logger ){ this.model.logger = this.logger; diff --git a/static/scripts/mvc/tags.js b/static/scripts/mvc/tags.js index fdd90d22cb7..200f78c927d 100644 --- a/static/scripts/mvc/tags.js +++ b/static/scripts/mvc/tags.js @@ -1,11 +1,12 @@ define([ -], function(){ + "mvc/base-mvc" +], function( baseMVC ){ // ============================================================================= /** A view on any model that has a 'tags' attribute (a list of tag strings) * Incorporates the select2 jQuery plugin for tags display/editing: * http://ivaynberg.github.io/select2/ */ -var TagsEditor = Backbone.View.extend( LoggableMixin ).extend( HiddenUntilActivatedViewMixin ).extend({ +var TagsEditor = Backbone.View.extend( baseMVC.LoggableMixin ).extend( baseMVC.HiddenUntilActivatedViewMixin ).extend({ tagName : 'div', className : 'tags-display', diff --git a/static/scripts/mvc/user/user-model.js b/static/scripts/mvc/user/user-model.js index fe80dc575b8..eee83e9cfe7 100644 --- a/static/scripts/mvc/user/user-model.js +++ b/static/scripts/mvc/user/user-model.js @@ -1,3 +1,7 @@ +define([ + "mvc/base-mvc" +], function( baseMVC ){ +//============================================================================== /** @class Model for a Galaxy user (including anonymous users). * @name User * @@ -6,7 +10,7 @@ * @borrows LoggableMixin#log as #log * @constructs */ -var User = Backbone.Model.extend( LoggableMixin ).extend( +var User = Backbone.Model.extend( baseMVC.LoggableMixin ).extend( /** @lends User.prototype */{ ///** logger used to record this.log messages, commonly set to console */ @@ -107,8 +111,14 @@ User.getCurrentUserFromApi = function( options ){ }; // (stub) collection for users (shouldn't be common unless admin UI) -var UserCollection = Backbone.Collection.extend( LoggableMixin ).extend({ +var UserCollection = Backbone.Collection.extend( baseMVC.LoggableMixin ).extend({ model : User, urlRoot : galaxy_config.root + 'api/users' //logger : console, }); + + +//============================================================================== +return { + User : User +};}); diff --git a/static/scripts/mvc/user/user-quotameter.js b/static/scripts/mvc/user/user-quotameter.js index 8d04f4cf6e2..c2095cc8873 100644 --- a/static/scripts/mvc/user/user-quotameter.js +++ b/static/scripts/mvc/user/user-quotameter.js @@ -1,3 +1,7 @@ +define([ + "mvc/base-mvc" +], function( baseMVC ){ +//============================================================================== /** @class View to display a user's disk/storage usage * either as a progress bar representing the percentage of a quota used * or a simple text element displaying the human readable size used. @@ -8,7 +12,7 @@ * @borrows LoggableMixin#log as #log * @constructs */ -var UserQuotaMeter = Backbone.View.extend( LoggableMixin ).extend( +var UserQuotaMeter = Backbone.View.extend( baseMVC.LoggableMixin ).extend( /** @lends UserQuotaMeter.prototype */{ ///** logger used to record this.log messages, commonly set to console */ @@ -149,3 +153,9 @@ var UserQuotaMeter = Backbone.View.extend( LoggableMixin ).extend( return 'UserQuotaMeter(' + this.model + ')'; } }); + + +//============================================================================== +return { + UserQuotaMeter : UserQuotaMeter +};}); diff --git a/static/scripts/mvc/visualization/visualization-model.js b/static/scripts/mvc/visualization/visualization-model.js index 83ae3e8b398..7e9b1d2e775 100644 --- a/static/scripts/mvc/visualization/visualization-model.js +++ b/static/scripts/mvc/visualization/visualization-model.js @@ -5,11 +5,9 @@ /** @class Model for a saved Galaxy visualization. * * @augments Backbone.Model - * @borrows LoggableMixin#logger as #logger - * @borrows LoggableMixin#log as #log * @constructs */ -var Visualization = Backbone.Model.extend( LoggableMixin ).extend( +var Visualization = Backbone.Model.extend( /** @lends Visualization.prototype */{ ///** logger used to record this.log messages, commonly set to console */ @@ -31,7 +29,7 @@ var Visualization = Backbone.Model.extend( LoggableMixin ).extend( * @see Backbone.Model#initialize */ initialize : function( data ){ - this.log( this + '.initialize', data, this.attributes ); + //this.log( this + '.initialize', data, this.attributes ); // munge config sub-object here since bbone won't handle defaults with this if( _.isObject( data.config ) && _.isObject( this.defaults.config ) ){ @@ -84,7 +82,7 @@ var Visualization = Backbone.Model.extend( LoggableMixin ).extend( * @borrows LoggableMixin#log as #log * @constructs */ -var VisualizationCollection = Backbone.Collection.extend( LoggableMixin ).extend( +var VisualizationCollection = Backbone.Collection.extend( /** @lends VisualizationCollection.prototype */{ model : Visualization, diff --git a/static/scripts/packed/mvc/annotations.js b/static/scripts/packed/mvc/annotations.js index cf70adbd885..68261ac042f 100644 --- a/static/scripts/packed/mvc/annotations.js +++ b/static/scripts/packed/mvc/annotations.js @@ -1 +1 @@ -define([],function(){var a=Backbone.View.extend(LoggableMixin).extend(HiddenUntilActivatedViewMixin).extend({tagName:"div",className:"annotation-display",initialize:function(b){b=b||{};this.tooltipConfig=b.tooltipConfig||{placement:"bottom"};this.listenTo(this.model,"change:annotation",function(){this.render()});this.hiddenUntilActivated(b.$activator,b)},render:function(){var b=this;this.$el.html(this._template());this.$el.find("[title]").tooltip(this.tooltipConfig);this.$annotation().make_text_editable({use_textarea:true,on_finish:function(c){b.$annotation().text(c);b.model.save({annotation:c},{silent:true}).fail(function(){b.$annotation().text(b.model.previous("annotation"))})}});return this},_template:function(){var b=this.model.get("annotation");return['",'
',b,"
"].join("")},$annotation:function(){return this.$el.find(".annotation")},remove:function(){this.$annotation.off();this.stopListening(this.model);Backbone.View.prototype.remove.call(this)},toString:function(){return["AnnotationEditor(",this.model+"",")"].join("")}});return{AnnotationEditor:a}}); \ No newline at end of file +define(["mvc/base-mvc"],function(a){var b=Backbone.View.extend(a.LoggableMixin).extend(a.HiddenUntilActivatedViewMixin).extend({tagName:"div",className:"annotation-display",initialize:function(c){c=c||{};this.tooltipConfig=c.tooltipConfig||{placement:"bottom"};this.listenTo(this.model,"change:annotation",function(){this.render()});this.hiddenUntilActivated(c.$activator,c)},render:function(){var c=this;this.$el.html(this._template());this.$el.find("[title]").tooltip(this.tooltipConfig);this.$annotation().make_text_editable({use_textarea:true,on_finish:function(d){c.$annotation().text(d);c.model.save({annotation:d},{silent:true}).fail(function(){c.$annotation().text(c.model.previous("annotation"))})}});return this},_template:function(){var c=this.model.get("annotation");return['",'
',c,"
"].join("")},$annotation:function(){return this.$el.find(".annotation")},remove:function(){this.$annotation.off();this.stopListening(this.model);Backbone.View.prototype.remove.call(this)},toString:function(){return["AnnotationEditor(",this.model+"",")"].join("")}});return{AnnotationEditor:b}}); \ No newline at end of file diff --git a/static/scripts/packed/mvc/base-mvc.js b/static/scripts/packed/mvc/base-mvc.js index f2edb4cfc36..06d343ec724 100644 --- a/static/scripts/packed/mvc/base-mvc.js +++ b/static/scripts/packed/mvc/base-mvc.js @@ -1 +1 @@ -var LoggableMixin={logger:null,log:function(){if(this.logger){var a=this.logger.log;if(typeof this.logger.log==="object"){a=Function.prototype.bind.call(this.logger.log,this.logger)}return a.apply(this.logger,arguments)}return undefined}};var SessionStorageModel=Backbone.Model.extend({initialize:function(b){b.id=(!_.isString(b.id))?(_.uniqueId()):(b.id);this.id=b.id;var a=(!this.isNew())?(this._read(this)):({});this.clear({silent:true});this.save(_.extend({},this.defaults,a,b),{silent:true});this.on("change",function(){this.save()})},sync:function(d,b,a){if(!a.silent){b.trigger("request",b,{},a)}var c;switch(d){case"create":c=this._create(b);break;case"read":c=this._read(b);break;case"update":c=this._update(b);break;case"delete":c=this._delete(b);break}if(c!==undefined||c!==null){if(a.success){a.success()}}else{if(a.error){a.error()}}return c},_create:function(a){var b=a.toJSON(),c=sessionStorage.setItem(a.id,JSON.stringify(b));return(c===null)?(c):(b)},_read:function(a){return JSON.parse(sessionStorage.getItem(a.id))},_update:function(a){return a._create(a)},_delete:function(a){return sessionStorage.removeItem(a.id)},isNew:function(){return !sessionStorage.hasOwnProperty(this.id)},_log:function(){return JSON.stringify(this.toJSON(),null," ")},toString:function(){return"SessionStorageModel("+this.id+")"}});(function(){SessionStorageModel.prototype=_.omit(SessionStorageModel.prototype,"url","urlRoot")}());var HiddenUntilActivatedViewMixin={hiddenUntilActivated:function(a,c){c=c||{};this.HUAVOptions={$elementShown:this.$el,showFn:jQuery.prototype.toggle,showSpeed:"fast"};_.extend(this.HUAVOptions,c||{});this.HUAVOptions.hasBeenShown=this.HUAVOptions.$elementShown.is(":visible");this.hidden=this.isHidden();if(a){var b=this;a.on("click",function(d){b.toggle(b.HUAVOptions.showSpeed)})}},isHidden:function(){return(this.HUAVOptions.$elementShown.is(":hidden"))},toggle:function(){if(this.hidden){if(!this.HUAVOptions.hasBeenShown){if(_.isFunction(this.HUAVOptions.onshowFirstTime)){this.HUAVOptions.hasBeenShown=true;this.HUAVOptions.onshowFirstTime.call(this)}}if(_.isFunction(this.HUAVOptions.onshow)){this.HUAVOptions.onshow.call(this);this.trigger("hiddenUntilActivated:shown",this)}this.hidden=false}else{if(_.isFunction(this.HUAVOptions.onhide)){this.HUAVOptions.onhide.call(this);this.trigger("hiddenUntilActivated:hidden",this)}this.hidden=true}return this.HUAVOptions.showFn.apply(this.HUAVOptions.$elementShown,arguments)}}; \ No newline at end of file +define([],function(){var c={logger:null,log:function(){if(this.logger){var d=this.logger.log;if(typeof this.logger.log==="object"){d=Function.prototype.bind.call(this.logger.log,this.logger)}return d.apply(this.logger,arguments)}return undefined}};var a=Backbone.Model.extend({initialize:function(e){e.id=(!_.isString(e.id))?(_.uniqueId()):(e.id);this.id=e.id;var d=(!this.isNew())?(this._read(this)):({});this.clear({silent:true});this.save(_.extend({},this.defaults,d,e),{silent:true});this.on("change",function(){this.save()})},sync:function(g,e,d){if(!d.silent){e.trigger("request",e,{},d)}var f;switch(g){case"create":f=this._create(e);break;case"read":f=this._read(e);break;case"update":f=this._update(e);break;case"delete":f=this._delete(e);break}if(f!==undefined||f!==null){if(d.success){d.success()}}else{if(d.error){d.error()}}return f},_create:function(d){var e=d.toJSON(),f=sessionStorage.setItem(d.id,JSON.stringify(e));return(f===null)?(f):(e)},_read:function(d){return JSON.parse(sessionStorage.getItem(d.id))},_update:function(d){return d._create(d)},_delete:function(d){return sessionStorage.removeItem(d.id)},isNew:function(){return !sessionStorage.hasOwnProperty(this.id)},_log:function(){return JSON.stringify(this.toJSON(),null," ")},toString:function(){return"SessionStorageModel("+this.id+")"}});(function(){a.prototype=_.omit(a.prototype,"url","urlRoot")}());var b={hiddenUntilActivated:function(d,f){f=f||{};this.HUAVOptions={$elementShown:this.$el,showFn:jQuery.prototype.toggle,showSpeed:"fast"};_.extend(this.HUAVOptions,f||{});this.HUAVOptions.hasBeenShown=this.HUAVOptions.$elementShown.is(":visible");this.hidden=this.isHidden();if(d){var e=this;d.on("click",function(g){e.toggle(e.HUAVOptions.showSpeed)})}},isHidden:function(){return(this.HUAVOptions.$elementShown.is(":hidden"))},toggle:function(){if(this.hidden){if(!this.HUAVOptions.hasBeenShown){if(_.isFunction(this.HUAVOptions.onshowFirstTime)){this.HUAVOptions.hasBeenShown=true;this.HUAVOptions.onshowFirstTime.call(this)}}if(_.isFunction(this.HUAVOptions.onshow)){this.HUAVOptions.onshow.call(this);this.trigger("hiddenUntilActivated:shown",this)}this.hidden=false}else{if(_.isFunction(this.HUAVOptions.onhide)){this.HUAVOptions.onhide.call(this);this.trigger("hiddenUntilActivated:hidden",this)}this.hidden=true}return this.HUAVOptions.showFn.apply(this.HUAVOptions.$elementShown,arguments)}};return{LoggableMixin:c,SessionStorageModel:a,HiddenUntilActivatedViewMixin:b}}); \ No newline at end of file diff --git a/static/scripts/packed/mvc/dataset/hda-base.js b/static/scripts/packed/mvc/dataset/hda-base.js index a736e41de9a..1c446a61b23 100644 --- a/static/scripts/packed/mvc/dataset/hda-base.js +++ b/static/scripts/packed/mvc/dataset/hda-base.js @@ -1 +1 @@ -define(["mvc/dataset/hda-model"],function(c){var b=Backbone.View.extend(LoggableMixin).extend({tagName:"div",className:"dataset hda history-panel-hda",id:function(){return"hda-"+this.model.get("id")},fxSpeed:"fast",initialize:function(e){if(e.logger){this.logger=this.model.logger=e.logger}this.log(this+".initialize:",e);this.defaultPrimaryActionButtonRenderers=[this._render_showParamsButton];this.linkTarget=e.linkTarget||"_blank";this.selectable=e.selectable||false;this.selected=e.selected||false;this.expanded=e.expanded||false;this.draggable=e.draggable||false;this._setUpListeners()},_setUpListeners:function(){this.model.on("change",function(f,e){if(this.model.changedAttributes().state&&this.model.inReadyState()&&this.expanded&&!this.model.hasDetails()){this.model.fetch()}else{this.render()}},this)},render:function(g){g=(g===undefined)?(true):(g);var e=this;this.$el.find("[title]").tooltip("destroy");this.urls=this.model.urls();var f=this._buildNewRender();if(g){$(e).queue(function(h){this.$el.fadeOut(e.fxSpeed,h)})}$(e).queue(function(h){this.$el.empty().attr("class",e.className).addClass("state-"+e.model.get("state")).append(f.children());if(this.selectable){this.showSelector(0)}h()});if(g){$(e).queue(function(h){this.$el.fadeIn(e.fxSpeed,h)})}$(e).queue(function(h){this.trigger("rendered",e);if(this.model.inReadyState()){this.trigger("rendered:ready",e)}if(this.draggable){this.draggableOn()}h()});return this},_buildNewRender:function(){var e=$(b.templates.skeleton(this.model.toJSON()));e.find(".dataset-primary-actions").append(this._render_titleButtons());e.children(".dataset-body").replaceWith(this._render_body());this._setUpBehaviors(e);return e},_setUpBehaviors:function(e){e=e||this.$el;make_popup_menus(e);e.find("[title]").tooltip({placement:"bottom"})},_render_titleButtons:function(){return[this._render_displayButton()]},_render_displayButton:function(){if((this.model.get("state")===c.HistoryDatasetAssociation.STATES.NOT_VIEWABLE)||(this.model.get("state")===c.HistoryDatasetAssociation.STATES.DISCARDED)||(this.model.get("state")===c.HistoryDatasetAssociation.STATES.NEW)||(!this.model.get("accessible"))){return null}var f={target:this.linkTarget,classes:"dataset-display"};if(this.model.get("purged")){f.disabled=true;f.title=_l("Cannot display datasets removed from disk")}else{if(this.model.get("state")===c.HistoryDatasetAssociation.STATES.UPLOAD){f.disabled=true;f.title=_l("This dataset must finish uploading before it can be viewed")}else{f.title=_l("View data");f.href=this.urls.display;var e=this;f.onclick=function(){if(Galaxy.frame&&Galaxy.frame.active){Galaxy.frame.add({title:"Data Viewer: "+e.model.get("name"),type:"url",content:e.urls.display})}}}}f.faIcon="fa-eye";return faIconButton(f)},_render_downloadButton:function(){if(this.model.get("purged")||!this.model.hasData()){return null}var f=this.urls,g=this.model.get("meta_files");if(_.isEmpty(g)){return $(['','',""].join(""))}var h="dataset-"+this.model.get("id")+"-popup",e=['
','',_l("Download Dataset"),"",""+_l("Additional Files")+"",_.map(g,function(i){return['',_l("Download")," ",i.file_type,""].join("")}).join("\n"),"
",'
','','','','',"","
"].join("\n");return $(e)},_render_showParamsButton:function(){return faIconButton({title:_l("View details"),classes:"dataset-params-btn",href:this.urls.show_params,target:this.linkTarget,faIcon:"fa-info-circle"})},_render_body:function(){var f=$('
Error: unknown dataset state "'+this.model.get("state")+'".
'),e=this["_render_body_"+this.model.get("state")];if(_.isFunction(e)){f=e.call(this)}this._setUpBehaviors(f);if(this.expanded){f.show()}return f},_render_stateBodyHelper:function(e,h){h=h||[];var f=this,g=$(b.templates.body(_.extend(this.model.toJSON(),{body:e})));g.find(".dataset-actions .left").append(_.map(h,function(i){return i.call(f)}));return g},_render_body_new:function(){return this._render_stateBodyHelper("
"+_l("This is a new dataset and not all of its data are available yet")+"
")},_render_body_noPermission:function(){return this._render_stateBodyHelper("
"+_l("You do not have permission to view this dataset")+"
")},_render_body_discarded:function(){return this._render_stateBodyHelper("
"+_l("The job creating this dataset was cancelled before completion")+"
",this.defaultPrimaryActionButtonRenderers)},_render_body_queued:function(){return this._render_stateBodyHelper("
"+_l("This job is waiting to run")+"
",this.defaultPrimaryActionButtonRenderers)},_render_body_upload:function(){return this._render_stateBodyHelper("
"+_l("This dataset is currently uploading")+"
")},_render_body_setting_metadata:function(){return this._render_stateBodyHelper("
"+_l("Metadata is being auto-detected")+"
")},_render_body_running:function(){return this._render_stateBodyHelper("
"+_l("This job is currently running")+"
",this.defaultPrimaryActionButtonRenderers)},_render_body_paused:function(){return this._render_stateBodyHelper("
"+_l('This job is paused. Use the "Resume Paused Jobs" in the history menu to resume')+"
",this.defaultPrimaryActionButtonRenderers)},_render_body_error:function(){var e=['',_l("An error occurred with this dataset"),":",'
',$.trim(this.model.get("misc_info")),"
"].join("");if(!this.model.get("purged")){e="
"+this.model.get("misc_blurb")+"
"+e}return this._render_stateBodyHelper(e,[this._render_downloadButton].concat(this.defaultPrimaryActionButtonRenderers))},_render_body_empty:function(){return this._render_stateBodyHelper("
"+_l("No data")+": "+this.model.get("misc_blurb")+"
",this.defaultPrimaryActionButtonRenderers)},_render_body_failed_metadata:function(){var e=$('
').append($("").text(_l("An error occurred setting the metadata for this dataset"))),f=this._render_body_ok();f.prepend(e);return f},_render_body_ok:function(){var e=this,g=$(b.templates.body(this.model.toJSON())),f=[this._render_downloadButton].concat(this.defaultPrimaryActionButtonRenderers);g.find(".dataset-actions .left").append(_.map(f,function(h){return h.call(e)}));if(this.model.isDeletedOrPurged()){return g}return g},events:{"click .dataset-title-bar":"toggleBodyVisibility","keydown .dataset-title-bar":"toggleBodyVisibility","click .dataset-selector":"toggleSelect"},toggleBodyVisibility:function(h,f){var e=32,g=13;if(h&&(h.type==="keydown")&&!(h.keyCode===e||h.keyCode===g)){return true}var i=this.$el.find(".dataset-body");f=(f===undefined)?(!i.is(":visible")):(f);if(f){this.expandBody()}else{this.collapseBody()}return false},expandBody:function(){var e=this;function f(){e.$el.children(".dataset-body").replaceWith(e._render_body());e.$el.children(".dataset-body").slideDown(e.fxSpeed,function(){e.expanded=true;e.trigger("body-expanded",e.model.get("id"))})}if(this.model.inReadyState()&&!this.model.hasDetails()){this.model.fetch({silent:true}).always(function(g){e.urls=e.model.urls();f()})}else{f()}},collapseBody:function(){var e=this;this.$el.children(".dataset-body").slideUp(e.fxSpeed,function(){e.expanded=false;e.trigger("body-collapsed",e.model.get("id"))})},showSelector:function(){if(this.selected){this.select(null,true)}this.selectable=true;this.trigger("selectable",true,this);this.$(".dataset-primary-actions").hide();this.$(".dataset-selector").show()},hideSelector:function(){this.selectable=false;this.trigger("selectable",false,this);this.$(".dataset-selector").hide();this.$(".dataset-primary-actions").show()},toggleSelector:function(){if(!this.$el.find(".dataset-selector").is(":visible")){this.showSelector()}else{this.hideSelector()}},select:function(e){this.$el.find(".dataset-selector span").removeClass("fa-square-o").addClass("fa-check-square-o");if(!this.selected){this.trigger("selected",this);this.selected=true}return false},deselect:function(e){this.$el.find(".dataset-selector span").removeClass("fa-check-square-o").addClass("fa-square-o");if(this.selected){this.trigger("de-selected",this);this.selected=false}return false},toggleSelect:function(e){if(this.selected){this.deselect(e)}else{this.select(e)}},draggableOn:function(){this.draggable=true;this.dragStartHandler=_.bind(this._dragStartHandler,this);this.dragEndHandler=_.bind(this._dragEndHandler,this);var e=this.$el.find(".dataset-title-bar").attr("draggable",true).get(0);e.addEventListener("dragstart",this.dragStartHandler,false);e.addEventListener("dragend",this.dragEndHandler,false)},draggableOff:function(){this.draggable=false;var e=this.$el.find(".dataset-title-bar").attr("draggable",false).get(0);e.removeEventListener("dragstart",this.dragStartHandler,false);e.removeEventListener("dragend",this.dragEndHandler,false)},toggleDraggable:function(){if(this.draggable){this.draggableOff()}else{this.draggableOn()}},_dragStartHandler:function(e){this.trigger("dragstart",this);e.dataTransfer.effectAllowed="move";e.dataTransfer.setData("text",JSON.stringify(this.model.toJSON()));return false},_dragEndHandler:function(e){this.trigger("dragend",this);return false},remove:function(f){var e=this;this.$el.fadeOut(e.fxSpeed,function(){e.$el.remove();e.off();if(f){f()}})},toString:function(){var e=(this.model)?(this.model+""):("(no model)");return"HDABaseView("+e+")"}});var a=['
','
',"<% if( hda.error ){ %>",'
',_l("There was an error getting the data for this dataset"),":<%- hda.error %>","
","<% } %>","<% if( hda.deleted ){ %>","<% if( hda.purged ){ %>",'
',_l("This dataset has been deleted and removed from disk."),"
","<% } else { %>",'
',_l("This dataset has been deleted."),"
","<% } %>","<% } %>","<% if( !hda.visible ){ %>",'
',_l("This dataset has been hidden."),"
","<% } %>","
",'
','',"
",'
','
','','
','<%- hda.hid %> ','<%- hda.name %>',"
","
",'
',"
"].join("");var d=['
',"<% if( hda.body ){ %>",'
',"<%= hda.body %>","
",'
','
','
',"
","<% } else { %>",'
',"<% if( hda.misc_blurb ){ %>",'
','<%- hda.misc_blurb %>',"
","<% } %>","<% if( hda.data_type ){ %>",'
','",'<%- hda.data_type %>',"
","<% } %>","<% if( hda.metadata_dbkey ){ %>",'
','",'',"<%- hda.metadata_dbkey %>","","
","<% } %>","<% if( hda.misc_info ){ %>",'
','<%- hda.misc_info %>',"
","<% } %>","
",'
','
','
',"
","<% if( !hda.deleted ){ %>",'
','
','
',"<% _.each( hda.display_apps, function( app ){ %>",'
','<%- app.label %> ','',"<% _.each( app.links, function( link ){ %>",'',"<% print( _l( link.text ) ); %>"," ","<% }); %>","","
","<% }); %>","<% _.each( hda.display_types, function( app ){ %>",'
','<%- app.label %> ','',"<% _.each( app.links, function( link ){ %>",'',"<% print( _l( link.text ) ); %>"," ","<% }); %>","","
","<% }); %>","
",'
',"<% if( hda.peek ){ %>",'
<%= hda.peek %>
',"<% } %>","
","<% } %>","<% } %>","
"].join("");b.templates={skeleton:function(e){return _.template(a,e,{variable:"hda"})},body:function(e){return _.template(d,e,{variable:"hda"})}};return{HDABaseView:b}}); \ No newline at end of file +define(["mvc/dataset/hda-model","mvc/base-mvc"],function(d,b){var c=Backbone.View.extend(b.LoggableMixin).extend({tagName:"div",className:"dataset hda history-panel-hda",id:function(){return"hda-"+this.model.get("id")},fxSpeed:"fast",initialize:function(f){if(f.logger){this.logger=this.model.logger=f.logger}this.log(this+".initialize:",f);this.defaultPrimaryActionButtonRenderers=[this._render_showParamsButton];this.linkTarget=f.linkTarget||"_blank";this.selectable=f.selectable||false;this.selected=f.selected||false;this.expanded=f.expanded||false;this.draggable=f.draggable||false;this._setUpListeners()},_setUpListeners:function(){this.model.on("change",function(g,f){if(this.model.changedAttributes().state&&this.model.inReadyState()&&this.expanded&&!this.model.hasDetails()){this.model.fetch()}else{this.render()}},this)},render:function(h){h=(h===undefined)?(true):(h);var f=this;this.$el.find("[title]").tooltip("destroy");this.urls=this.model.urls();var g=this._buildNewRender();if(h){$(f).queue(function(i){this.$el.fadeOut(f.fxSpeed,i)})}$(f).queue(function(i){this.$el.empty().attr("class",f.className).addClass("state-"+f.model.get("state")).append(g.children());if(this.selectable){this.showSelector(0)}i()});if(h){$(f).queue(function(i){this.$el.fadeIn(f.fxSpeed,i)})}$(f).queue(function(i){this.trigger("rendered",f);if(this.model.inReadyState()){this.trigger("rendered:ready",f)}if(this.draggable){this.draggableOn()}i()});return this},_buildNewRender:function(){var f=$(c.templates.skeleton(this.model.toJSON()));f.find(".dataset-primary-actions").append(this._render_titleButtons());f.children(".dataset-body").replaceWith(this._render_body());this._setUpBehaviors(f);return f},_setUpBehaviors:function(f){f=f||this.$el;make_popup_menus(f);f.find("[title]").tooltip({placement:"bottom"})},_render_titleButtons:function(){return[this._render_displayButton()]},_render_displayButton:function(){if((this.model.get("state")===d.HistoryDatasetAssociation.STATES.NOT_VIEWABLE)||(this.model.get("state")===d.HistoryDatasetAssociation.STATES.DISCARDED)||(this.model.get("state")===d.HistoryDatasetAssociation.STATES.NEW)||(!this.model.get("accessible"))){return null}var g={target:this.linkTarget,classes:"dataset-display"};if(this.model.get("purged")){g.disabled=true;g.title=_l("Cannot display datasets removed from disk")}else{if(this.model.get("state")===d.HistoryDatasetAssociation.STATES.UPLOAD){g.disabled=true;g.title=_l("This dataset must finish uploading before it can be viewed")}else{g.title=_l("View data");g.href=this.urls.display;var f=this;g.onclick=function(){if(Galaxy.frame&&Galaxy.frame.active){Galaxy.frame.add({title:"Data Viewer: "+f.model.get("name"),type:"url",content:f.urls.display})}}}}g.faIcon="fa-eye";return faIconButton(g)},_render_downloadButton:function(){if(this.model.get("purged")||!this.model.hasData()){return null}var g=this.urls,h=this.model.get("meta_files");if(_.isEmpty(h)){return $(['','',""].join(""))}var i="dataset-"+this.model.get("id")+"-popup",f=['
','',_l("Download Dataset"),"",""+_l("Additional Files")+"",_.map(h,function(j){return['',_l("Download")," ",j.file_type,""].join("")}).join("\n"),"
",'
','','','','',"","
"].join("\n");return $(f)},_render_showParamsButton:function(){return faIconButton({title:_l("View details"),classes:"dataset-params-btn",href:this.urls.show_params,target:this.linkTarget,faIcon:"fa-info-circle"})},_render_body:function(){var g=$('
Error: unknown dataset state "'+this.model.get("state")+'".
'),f=this["_render_body_"+this.model.get("state")];if(_.isFunction(f)){g=f.call(this)}this._setUpBehaviors(g);if(this.expanded){g.show()}return g},_render_stateBodyHelper:function(f,i){i=i||[];var g=this,h=$(c.templates.body(_.extend(this.model.toJSON(),{body:f})));h.find(".dataset-actions .left").append(_.map(i,function(j){return j.call(g)}));return h},_render_body_new:function(){return this._render_stateBodyHelper("
"+_l("This is a new dataset and not all of its data are available yet")+"
")},_render_body_noPermission:function(){return this._render_stateBodyHelper("
"+_l("You do not have permission to view this dataset")+"
")},_render_body_discarded:function(){return this._render_stateBodyHelper("
"+_l("The job creating this dataset was cancelled before completion")+"
",this.defaultPrimaryActionButtonRenderers)},_render_body_queued:function(){return this._render_stateBodyHelper("
"+_l("This job is waiting to run")+"
",this.defaultPrimaryActionButtonRenderers)},_render_body_upload:function(){return this._render_stateBodyHelper("
"+_l("This dataset is currently uploading")+"
")},_render_body_setting_metadata:function(){return this._render_stateBodyHelper("
"+_l("Metadata is being auto-detected")+"
")},_render_body_running:function(){return this._render_stateBodyHelper("
"+_l("This job is currently running")+"
",this.defaultPrimaryActionButtonRenderers)},_render_body_paused:function(){return this._render_stateBodyHelper("
"+_l('This job is paused. Use the "Resume Paused Jobs" in the history menu to resume')+"
",this.defaultPrimaryActionButtonRenderers)},_render_body_error:function(){var f=['',_l("An error occurred with this dataset"),":",'
',$.trim(this.model.get("misc_info")),"
"].join("");if(!this.model.get("purged")){f="
"+this.model.get("misc_blurb")+"
"+f}return this._render_stateBodyHelper(f,[this._render_downloadButton].concat(this.defaultPrimaryActionButtonRenderers))},_render_body_empty:function(){return this._render_stateBodyHelper("
"+_l("No data")+": "+this.model.get("misc_blurb")+"
",this.defaultPrimaryActionButtonRenderers)},_render_body_failed_metadata:function(){var f=$('
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"].join("");c.templates={skeleton:function(f){return _.template(a,f,{variable:"hda"})},body:function(f){return _.template(e,f,{variable:"hda"})}};return{HDABaseView:c}}); \ No newline at end of file diff --git a/static/scripts/packed/mvc/dataset/hda-edit.js b/static/scripts/packed/mvc/dataset/hda-edit.js index b7e455a060d..4deb404a422 100644 --- a/static/scripts/packed/mvc/dataset/hda-edit.js +++ b/static/scripts/packed/mvc/dataset/hda-edit.js @@ -1 +1 @@ -define(["mvc/dataset/hda-model","mvc/dataset/hda-base","mvc/tags","mvc/annotations"],function(f,b,a,e){var g=b.HDABaseView.extend(LoggableMixin).extend({initialize:function(h){b.HDABaseView.prototype.initialize.call(this,h);this.hasUser=h.hasUser;this.defaultPrimaryActionButtonRenderers=[this._render_showParamsButton,this._render_rerunButton];this.tagsEditorShown=h.tagsEditorShown||false;this.annotationEditorShown=h.annotationEditorShown||false},_render_titleButtons:function(){return b.HDABaseView.prototype._render_titleButtons.call(this).concat([this._render_editButton(),this._render_deleteButton()])},_render_editButton:function(){if((this.model.get("state")===f.HistoryDatasetAssociation.STATES.NEW)||(this.model.get("state")===f.HistoryDatasetAssociation.STATES.DISCARDED)||(this.model.get("state")===f.HistoryDatasetAssociation.STATES.NOT_VIEWABLE)||(!this.model.get("accessible"))){return null}var j=this.model.get("purged"),h=this.model.get("deleted"),i={title:_l("Edit attributes"),href:this.urls.edit,target:this.linkTarget,classes:"dataset-edit"};if(h||j){i.disabled=true;if(j){i.title=_l("Cannot edit attributes of datasets removed from disk")}else{if(h){i.title=_l("Undelete dataset to edit attributes")}}}else{if(this.model.get("state")===f.HistoryDatasetAssociation.STATES.UPLOAD){i.disabled=true;i.title=_l("This dataset must finish uploading before it can be edited")}}i.faIcon="fa-pencil";return faIconButton(i)},_render_deleteButton:function(){if((this.model.get("state")===f.HistoryDatasetAssociation.STATES.NEW)||(this.model.get("state")===f.HistoryDatasetAssociation.STATES.NOT_VIEWABLE)||(!this.model.get("accessible"))){return null}var h=this,i={title:_l("Delete"),classes:"dataset-delete",onclick:function(){h.$el.find(".icon-btn.dataset-delete").trigger("mouseout");h.model["delete"]()}};if(this.model.get("deleted")||this.model.get("purged")){i={title:_l("Dataset is already deleted"),disabled:true}}i.faIcon="fa-times";return faIconButton(i)},_render_errButton:function(){if(this.model.get("state")!==f.HistoryDatasetAssociation.STATES.ERROR){return null}return faIconButton({title:_l("View or report this error"),href:this.urls.report_error,classes:"dataset-report-error-btn",target:this.linkTarget,faIcon:"fa-bug"})},_render_rerunButton:function(){return faIconButton({title:_l("Run this job again"),href:this.urls.rerun,classes:"dataset-rerun-btn",target:this.linkTarget,faIcon:"fa-refresh"})},_render_visualizationsButton:function(){var h=this.model.get("visualizations");if((!this.hasUser)||(!this.model.hasData())||(_.isEmpty(h))){return null}if(_.isObject(h[0])){return this._render_visualizationsFrameworkButton(h)}if(!this.urls.visualization){return null}var j=this.model.get("dbkey"),n=this.urls.visualization,k={},o={dataset_id:this.model.get("id"),hda_ldda:"hda"};if(j){o.dbkey=j}var i=faIconButton({title:_l("Visualize"),classes:"dataset-visualize-btn",faIcon:"fa-bar-chart-o"});function l(p){if(p==="trackster"){return c(n,o,j)}return function(){Galaxy.frame.add({title:"Visualization",type:"url",content:n+"/"+p+"?"+$.param(o)})}}function m(p){return p.charAt(0).toUpperCase()+p.slice(1)}if(h.length===1){i.attr("data-original-title",_l("Visualize in ")+_l(m(h[0])));i.click(l(h[0]))}else{_.each(h,function(p){k[_l(m(p))]=l(p)});make_popupmenu(i,k)}return i},_render_visualizationsFrameworkButton:function(h){if(!(this.model.hasData())||!(h&&!_.isEmpty(h))){return null}var j=faIconButton({title:_l("Visualize"),classes:"dataset-visualize-btn",faIcon:"fa-bar-chart-o"});if(h.length===1){var i=h[0];j.attr("data-original-title",_l("Visualize in ")+i.html);j.attr("href",i.href)}else{var k=[];_.each(h,function(l){l.func=function(){if(Galaxy.frame.active){Galaxy.frame.add({title:"Visualization",type:"url",content:l.href});return false}return true};k.push(l);return false});PopupMenu.create(j,k)}return j},_buildNewRender:function(){var h=b.HDABaseView.prototype._buildNewRender.call(this);h.find(".dataset-deleted-msg").append(_l('Click here to undelete it or here to immediately remove it from disk'));h.find(".dataset-hidden-msg").append(_l('Click here to unhide it'));return h},_render_body_failed_metadata:function(){var i=$("").attr({href:this.urls.edit,target:this.linkTarget}).text(_l("set it manually or retry auto-detection")),h=$("").text(". "+_l("You may be able to")+" ").append(i),j=b.HDABaseView.prototype._render_body_failed_metadata.call(this);j.find(".warningmessagesmall strong").append(h);return j},_render_body_error:function(){var h=b.HDABaseView.prototype._render_body_error.call(this);h.find(".dataset-actions .left").prepend(this._render_errButton());return h},_render_body_ok:function(){var h=b.HDABaseView.prototype._render_body_ok.call(this);if(this.model.isDeletedOrPurged()){return h}this.makeDbkeyEditLink(h);if(this.hasUser){h.find(".dataset-actions .left").append(this._render_visualizationsButton());this._renderTags(h);this._renderAnnotation(h)}return h},_renderTags:function(h){var i=this;this.tagsEditor=new a.TagsEditor({model:this.model,el:h.find(".tags-display"),onshowFirstTime:function(){this.render()},onshow:function(){i.tagsEditorShown=true},onhide:function(){i.tagsEditorShown=false},$activator:faIconButton({title:_l("Edit dataset tags"),classes:"dataset-tag-btn",faIcon:"fa-tags"}).appendTo(h.find(".dataset-actions .right"))});if(this.tagsEditorShown){this.tagsEditor.toggle(true)}},_renderAnnotation:function(h){var i=this;this.annotationEditor=new e.AnnotationEditor({model:this.model,el:h.find(".annotation-display"),onshowFirstTime:function(){this.render()},onshow:function(){i.annotationEditorShown=true},onhide:function(){i.annotationEditorShown=false},$activator:faIconButton({title:_l("Edit dataset annotation"),classes:"dataset-annotate-btn",faIcon:"fa-comment"}).appendTo(h.find(".dataset-actions .right"))});if(this.annotationEditorShown){this.annotationEditor.toggle(true)}},makeDbkeyEditLink:function(i){if(this.model.get("metadata_dbkey")==="?"&&!this.model.isDeletedOrPurged()){var h=$('?').attr("href",this.urls.edit).attr("target",this.linkTarget);i.find(".dataset-dbkey .value").replaceWith(h)}},events:_.extend(_.clone(b.HDABaseView.prototype.events),{"click .dataset-undelete":function(h){this.model.undelete();return false},"click .dataset-unhide":function(h){this.model.unhide();return false},"click .dataset-purge":"confirmPurge"}),confirmPurge:function d(h){this.model.purge();return false},toString:function(){var h=(this.model)?(this.model+""):("(no model)");return"HDAView("+h+")"}});function c(h,j,i){return function(){var k={};if(i){k["f-dbkey"]=i}$.ajax({url:h+"/list_tracks?"+$.param(k),dataType:"html",error:function(){alert(("Could not add this dataset to browser")+".")},success:function(l){var m=window.parent;m.Galaxy.modal.show({title:"View Data in a New or Saved Visualization",buttons:{Cancel:function(){m.Galaxy.modal.hide()},"View in saved visualization":function(){m.Galaxy.modal.show({title:"Add Data to Saved Visualization",body:l,buttons:{Cancel:function(){m.Galaxy.modal.hide()},"Add to visualization":function(){$(m.document).find("input[name=id]:checked").each(function(){m.Galaxy.modal.hide();var n=$(this).val();j.id=n;m.Galaxy.frame.add({title:"Trackster",type:"url",content:h+"/trackster?"+$.param(j)})})}}})},"View in new visualization":function(){m.Galaxy.modal.hide();var n=h+"/trackster?"+$.param(j);m.Galaxy.frame.add({title:"Trackster",type:"url",content:n})}}})}});return false}}return{HDAEditView:g}}); \ No newline at end of file +define(["mvc/dataset/hda-model","mvc/dataset/hda-base","mvc/tags","mvc/annotations"],function(f,b,a,e){var g=b.HDABaseView.extend({initialize:function(h){b.HDABaseView.prototype.initialize.call(this,h);this.hasUser=h.hasUser;this.defaultPrimaryActionButtonRenderers=[this._render_showParamsButton,this._render_rerunButton];this.tagsEditorShown=h.tagsEditorShown||false;this.annotationEditorShown=h.annotationEditorShown||false},_render_titleButtons:function(){return b.HDABaseView.prototype._render_titleButtons.call(this).concat([this._render_editButton(),this._render_deleteButton()])},_render_editButton:function(){if((this.model.get("state")===f.HistoryDatasetAssociation.STATES.NEW)||(this.model.get("state")===f.HistoryDatasetAssociation.STATES.DISCARDED)||(this.model.get("state")===f.HistoryDatasetAssociation.STATES.NOT_VIEWABLE)||(!this.model.get("accessible"))){return null}var j=this.model.get("purged"),h=this.model.get("deleted"),i={title:_l("Edit attributes"),href:this.urls.edit,target:this.linkTarget,classes:"dataset-edit"};if(h||j){i.disabled=true;if(j){i.title=_l("Cannot edit attributes of datasets removed from disk")}else{if(h){i.title=_l("Undelete dataset to edit attributes")}}}else{if(this.model.get("state")===f.HistoryDatasetAssociation.STATES.UPLOAD){i.disabled=true;i.title=_l("This dataset must finish uploading before it can be edited")}}i.faIcon="fa-pencil";return faIconButton(i)},_render_deleteButton:function(){if((this.model.get("state")===f.HistoryDatasetAssociation.STATES.NEW)||(this.model.get("state")===f.HistoryDatasetAssociation.STATES.NOT_VIEWABLE)||(!this.model.get("accessible"))){return null}var h=this,i={title:_l("Delete"),classes:"dataset-delete",onclick:function(){h.$el.find(".icon-btn.dataset-delete").trigger("mouseout");h.model["delete"]()}};if(this.model.get("deleted")||this.model.get("purged")){i={title:_l("Dataset is already deleted"),disabled:true}}i.faIcon="fa-times";return faIconButton(i)},_render_errButton:function(){if(this.model.get("state")!==f.HistoryDatasetAssociation.STATES.ERROR){return null}return faIconButton({title:_l("View or report this error"),href:this.urls.report_error,classes:"dataset-report-error-btn",target:this.linkTarget,faIcon:"fa-bug"})},_render_rerunButton:function(){return faIconButton({title:_l("Run this job again"),href:this.urls.rerun,classes:"dataset-rerun-btn",target:this.linkTarget,faIcon:"fa-refresh"})},_render_visualizationsButton:function(){var h=this.model.get("visualizations");if((!this.hasUser)||(!this.model.hasData())||(_.isEmpty(h))){return null}if(_.isObject(h[0])){return this._render_visualizationsFrameworkButton(h)}if(!this.urls.visualization){return null}var j=this.model.get("dbkey"),n=this.urls.visualization,k={},o={dataset_id:this.model.get("id"),hda_ldda:"hda"};if(j){o.dbkey=j}var i=faIconButton({title:_l("Visualize"),classes:"dataset-visualize-btn",faIcon:"fa-bar-chart-o"});function l(p){if(p==="trackster"){return c(n,o,j)}return function(){Galaxy.frame.add({title:"Visualization",type:"url",content:n+"/"+p+"?"+$.param(o)})}}function m(p){return p.charAt(0).toUpperCase()+p.slice(1)}if(h.length===1){i.attr("data-original-title",_l("Visualize in ")+_l(m(h[0])));i.click(l(h[0]))}else{_.each(h,function(p){k[_l(m(p))]=l(p)});make_popupmenu(i,k)}return i},_render_visualizationsFrameworkButton:function(h){if(!(this.model.hasData())||!(h&&!_.isEmpty(h))){return null}var j=faIconButton({title:_l("Visualize"),classes:"dataset-visualize-btn",faIcon:"fa-bar-chart-o"});if(h.length===1){var i=h[0];j.attr("data-original-title",_l("Visualize in ")+i.html);j.attr("href",i.href)}else{var k=[];_.each(h,function(l){l.func=function(){if(Galaxy.frame.active){Galaxy.frame.add({title:"Visualization",type:"url",content:l.href});return false}return true};k.push(l);return false});PopupMenu.create(j,k)}return j},_buildNewRender:function(){var h=b.HDABaseView.prototype._buildNewRender.call(this);h.find(".dataset-deleted-msg").append(_l('Click here to undelete it or here to immediately remove it from disk'));h.find(".dataset-hidden-msg").append(_l('Click here to unhide it'));return h},_render_body_failed_metadata:function(){var i=$("").attr({href:this.urls.edit,target:this.linkTarget}).text(_l("set it manually or retry auto-detection")),h=$("").text(". "+_l("You may be able to")+" ").append(i),j=b.HDABaseView.prototype._render_body_failed_metadata.call(this);j.find(".warningmessagesmall strong").append(h);return j},_render_body_error:function(){var h=b.HDABaseView.prototype._render_body_error.call(this);h.find(".dataset-actions .left").prepend(this._render_errButton());return h},_render_body_ok:function(){var h=b.HDABaseView.prototype._render_body_ok.call(this);if(this.model.isDeletedOrPurged()){return h}this.makeDbkeyEditLink(h);if(this.hasUser){h.find(".dataset-actions .left").append(this._render_visualizationsButton());this._renderTags(h);this._renderAnnotation(h)}return h},_renderTags:function(h){var i=this;this.tagsEditor=new a.TagsEditor({model:this.model,el:h.find(".tags-display"),onshowFirstTime:function(){this.render()},onshow:function(){i.tagsEditorShown=true},onhide:function(){i.tagsEditorShown=false},$activator:faIconButton({title:_l("Edit dataset tags"),classes:"dataset-tag-btn",faIcon:"fa-tags"}).appendTo(h.find(".dataset-actions .right"))});if(this.tagsEditorShown){this.tagsEditor.toggle(true)}},_renderAnnotation:function(h){var i=this;this.annotationEditor=new e.AnnotationEditor({model:this.model,el:h.find(".annotation-display"),onshowFirstTime:function(){this.render()},onshow:function(){i.annotationEditorShown=true},onhide:function(){i.annotationEditorShown=false},$activator:faIconButton({title:_l("Edit dataset annotation"),classes:"dataset-annotate-btn",faIcon:"fa-comment"}).appendTo(h.find(".dataset-actions .right"))});if(this.annotationEditorShown){this.annotationEditor.toggle(true)}},makeDbkeyEditLink:function(i){if(this.model.get("metadata_dbkey")==="?"&&!this.model.isDeletedOrPurged()){var h=$('?').attr("href",this.urls.edit).attr("target",this.linkTarget);i.find(".dataset-dbkey .value").replaceWith(h)}},events:_.extend(_.clone(b.HDABaseView.prototype.events),{"click .dataset-undelete":function(h){this.model.undelete();return false},"click .dataset-unhide":function(h){this.model.unhide();return false},"click .dataset-purge":"confirmPurge"}),confirmPurge:function d(h){this.model.purge();return false},toString:function(){var h=(this.model)?(this.model+""):("(no model)");return"HDAView("+h+")"}});function c(h,j,i){return function(){var k={};if(i){k["f-dbkey"]=i}$.ajax({url:h+"/list_tracks?"+$.param(k),dataType:"html",error:function(){alert(("Could not add this dataset to browser")+".")},success:function(l){var m=window.parent;m.Galaxy.modal.show({title:"View Data in a New or Saved Visualization",buttons:{Cancel:function(){m.Galaxy.modal.hide()},"View in saved visualization":function(){m.Galaxy.modal.show({title:"Add Data to Saved Visualization",body:l,buttons:{Cancel:function(){m.Galaxy.modal.hide()},"Add to visualization":function(){$(m.document).find("input[name=id]:checked").each(function(){m.Galaxy.modal.hide();var n=$(this).val();j.id=n;m.Galaxy.frame.add({title:"Trackster",type:"url",content:h+"/trackster?"+$.param(j)})})}}})},"View in new visualization":function(){m.Galaxy.modal.hide();var n=h+"/trackster?"+$.param(j);m.Galaxy.frame.add({title:"Trackster",type:"url",content:n})}}})}});return false}}return{HDAEditView:g}}); \ No newline at end of file diff --git a/static/scripts/packed/mvc/dataset/hda-model.js b/static/scripts/packed/mvc/dataset/hda-model.js index 2e2ab3f57ed..2c27ea4bfdf 100644 --- a/static/scripts/packed/mvc/dataset/hda-model.js +++ b/static/scripts/packed/mvc/dataset/hda-model.js @@ -1 +1 @@ -define([],function(){var d=Backbone.Model.extend(LoggableMixin).extend({defaults:{history_id:null,model_class:"HistoryDatasetAssociation",hid:0,id:null,name:"(unnamed dataset)",state:"new",deleted:false,visible:true,accessible:true,purged:false,data_type:"",file_size:0,file_ext:"",meta_files:[],misc_blurb:"",misc_info:"",tags:[],annotation:""},urlRoot:galaxy_config.root+"api/histories/",url:function(){return this.urlRoot+this.get("history_id")+"/contents/"+this.get("id")},urls:function(){var i=this.get("id");if(!i){return{}}var h={purge:galaxy_config.root+"datasets/"+i+"/purge_async",display:galaxy_config.root+"datasets/"+i+"/display/?preview=True",edit:galaxy_config.root+"datasets/"+i+"/edit",download:galaxy_config.root+"datasets/"+i+"/display?to_ext="+this.get("file_ext"),report_error:galaxy_config.root+"dataset/errors?id="+i,rerun:galaxy_config.root+"tool_runner/rerun?id="+i,show_params:galaxy_config.root+"datasets/"+i+"/show_params",visualization:galaxy_config.root+"visualization",annotation:{get:galaxy_config.root+"dataset/get_annotation_async?id="+i,set:galaxy_config.root+"dataset/annotate_async?id="+i},meta_download:galaxy_config.root+"dataset/get_metadata_file?hda_id="+i+"&metadata_name="};return h},initialize:function(h){this.log(this+".initialize",this.attributes);this.log("\tparent history_id: "+this.get("history_id"));if(!this.get("accessible")){this.set("state",d.STATES.NOT_VIEWABLE)}this._setUpListeners()},_setUpListeners:function(){this.on("change:state",function(i,h){this.log(this+" has changed state:",i,h);if(this.inReadyState()){this.trigger("state:ready",i,h,this.previous("state"))}})},isDeletedOrPurged:function(){return(this.get("deleted")||this.get("purged"))},isVisible:function(i,j){var h=true;if((!i)&&(this.get("deleted")||this.get("purged"))){h=false}if((!j)&&(!this.get("visible"))){h=false}return h},hidden:function(){return !this.get("visible")},inReadyState:function(){var h=_.contains(d.READY_STATES,this.get("state"));return(this.isDeletedOrPurged()||h)},hasDetails:function(){return _.has(this.attributes,"genome_build")},hasData:function(){return(this.get("file_size")>0)},"delete":function c(h){if(this.get("deleted")){return jQuery.when()}return this.save({deleted:true},h)},undelete:function a(h){if(!this.get("deleted")||this.get("purged")){return jQuery.when()}return this.save({deleted:false},h)},hide:function b(h){if(!this.get("visible")){return jQuery.when()}return this.save({visible:false},h)},unhide:function g(h){if(this.get("visible")){return jQuery.when()}return this.save({visible:true},h)},purge:function f(h){if(this.get("purged")){return jQuery.when()}h=h||{};h.url=galaxy_config.root+"datasets/"+this.get("id")+"/purge_async";var i=this,j=jQuery.ajax(h);j.done(function(m,k,l){i.set({deleted:true,purged:true})});j.fail(function(o,k,n){var l=_l("Unable to purge dataset");var m=("Removal of datasets by users is not allowed in this Galaxy instance");if(o.responseJSON&&o.responseJSON.error){l=o.responseJSON.error}else{if(o.responseText.indexOf(m)!==-1){l=m}}o.responseText=l;i.trigger("error",i,o,h,_l(l),{error:l})});return j},searchAttributes:["name","file_ext","genome_build","misc_blurb","misc_info","annotation","tags"],searchAliases:{title:"name",format:"file_ext",database:"genome_build",blurb:"misc_blurb",description:"misc_blurb",info:"misc_info",tag:"tags"},searchAttribute:function(j,h){var i=this.get(j);if(!h||(i===undefined||i===null)){return false}if(_.isArray(i)){return this._searchArrayAttribute(i,h)}return(i.toString().toLowerCase().indexOf(h.toLowerCase())!==-1)},_searchArrayAttribute:function(i,h){h=h.toLowerCase();return _.any(i,function(j){return(j.toString().toLowerCase().indexOf(h.toLowerCase())!==-1)})},search:function(h){var i=this;return _.filter(this.searchAttributes,function(j){return i.searchAttribute(j,h)})},matches:function(i){var k="=",h=i.split(k);if(h.length>=2){var j=h[0];j=this.searchAliases[j]||j;return this.searchAttribute(j,h[1])}return !!this.search(i).length},matchesAll:function(i){var h=this;i=i.match(/(".*"|\w*=".*"|\S*)/g).filter(function(j){return !!j});return _.all(i,function(j){j=j.replace(/"/g,"");return h.matches(j)})},toString:function(){var h=this.get("id")||"";if(this.get("name")){h=this.get("hid")+' :"'+this.get("name")+'",'+h}return"HDA("+h+")"}});d.STATES={UPLOAD:"upload",QUEUED:"queued",RUNNING:"running",SETTING_METADATA:"setting_metadata",NEW:"new",EMPTY:"empty",OK:"ok",PAUSED:"paused",FAILED_METADATA:"failed_metadata",NOT_VIEWABLE:"noPermission",DISCARDED:"discarded",ERROR:"error"};d.READY_STATES=[d.STATES.NEW,d.STATES.OK,d.STATES.EMPTY,d.STATES.PAUSED,d.STATES.FAILED_METADATA,d.STATES.NOT_VIEWABLE,d.STATES.DISCARDED,d.STATES.ERROR];d.NOT_READY_STATES=[d.STATES.UPLOAD,d.STATES.QUEUED,d.STATES.RUNNING,d.STATES.SETTING_METADATA];var e=Backbone.Collection.extend(LoggableMixin).extend({model:d,urlRoot:galaxy_config.root+"api/histories",url:function(){return this.urlRoot+"/"+this.historyId+"/contents"},initialize:function(i,h){h=h||{};this.historyId=h.historyId},ids:function(){return this.map(function(h){return h.id})},notReady:function(){return this.filter(function(h){return !h.inReadyState()})},running:function(){var h=[];this.each(function(i){if(!i.inReadyState()){h.push(i.get("id"))}});return h},getByHid:function(h){return _.first(this.filter(function(i){return i.get("hid")===h}))},getVisible:function(h,k,j){j=j||[];var i=new e(this.filter(function(l){return l.isVisible(h,k)}));_.each(j,function(l){if(!_.isFunction(l)){return}i=new e(i.filter(l))});return i},haveDetails:function(){return this.all(function(h){return h.hasDetails()})},fetchAllDetails:function(i){i=i||{};var h={details:"all"};i.data=(i.data)?(_.extend(i.data,h)):(h);return this.fetch(i)},ajaxQueue:function(k,j){var i=jQuery.Deferred(),h=this.length,m=[];if(!h){i.resolve([]);return i}var l=this.chain().reverse().map(function(o,n){return function(){var p=k.call(o,j);p.done(function(q){i.notify({curr:n,total:h,response:q,model:o})});p.always(function(q){m.push(q);if(l.length){l.shift()()}else{i.resolve(m)}})}}).value();l.shift()();return i},matches:function(h){return this.filter(function(i){return i.matches(h)})},set:function(j,h){var i=this;j=_.map(j,function(l){var m=i.get(l.id);if(!m){return l}var k=m.toJSON();_.extend(k,l);return k});Backbone.Collection.prototype.set.call(this,j,h)},toString:function(){return(["HDACollection(",[this.historyId,this.length].join(),")"].join(""))}});return{HistoryDatasetAssociation:d,HDACollection:e}}); \ No newline at end of file +define(["mvc/base-mvc"],function(b){var e=Backbone.Model.extend(b.LoggableMixin).extend({defaults:{history_id:null,model_class:"HistoryDatasetAssociation",hid:0,id:null,name:"(unnamed dataset)",state:"new",deleted:false,visible:true,accessible:true,purged:false,data_type:"",file_size:0,file_ext:"",meta_files:[],misc_blurb:"",misc_info:"",tags:[],annotation:""},urlRoot:galaxy_config.root+"api/histories/",url:function(){return this.urlRoot+this.get("history_id")+"/contents/"+this.get("id")},urls:function(){var j=this.get("id");if(!j){return{}}var i={purge:galaxy_config.root+"datasets/"+j+"/purge_async",display:galaxy_config.root+"datasets/"+j+"/display/?preview=True",edit:galaxy_config.root+"datasets/"+j+"/edit",download:galaxy_config.root+"datasets/"+j+"/display?to_ext="+this.get("file_ext"),report_error:galaxy_config.root+"dataset/errors?id="+j,rerun:galaxy_config.root+"tool_runner/rerun?id="+j,show_params:galaxy_config.root+"datasets/"+j+"/show_params",visualization:galaxy_config.root+"visualization",annotation:{get:galaxy_config.root+"dataset/get_annotation_async?id="+j,set:galaxy_config.root+"dataset/annotate_async?id="+j},meta_download:galaxy_config.root+"dataset/get_metadata_file?hda_id="+j+"&metadata_name="};return i},initialize:function(i){this.log(this+".initialize",this.attributes);this.log("\tparent history_id: "+this.get("history_id"));if(!this.get("accessible")){this.set("state",e.STATES.NOT_VIEWABLE)}this._setUpListeners()},_setUpListeners:function(){this.on("change:state",function(j,i){this.log(this+" has changed state:",j,i);if(this.inReadyState()){this.trigger("state:ready",j,i,this.previous("state"))}})},isDeletedOrPurged:function(){return(this.get("deleted")||this.get("purged"))},isVisible:function(j,k){var i=true;if((!j)&&(this.get("deleted")||this.get("purged"))){i=false}if((!k)&&(!this.get("visible"))){i=false}return i},hidden:function(){return !this.get("visible")},inReadyState:function(){var i=_.contains(e.READY_STATES,this.get("state"));return(this.isDeletedOrPurged()||i)},hasDetails:function(){return _.has(this.attributes,"genome_build")},hasData:function(){return(this.get("file_size")>0)},"delete":function d(i){if(this.get("deleted")){return jQuery.when()}return this.save({deleted:true},i)},undelete:function a(i){if(!this.get("deleted")||this.get("purged")){return jQuery.when()}return this.save({deleted:false},i)},hide:function c(i){if(!this.get("visible")){return jQuery.when()}return this.save({visible:false},i)},unhide:function h(i){if(this.get("visible")){return jQuery.when()}return this.save({visible:true},i)},purge:function g(i){if(this.get("purged")){return jQuery.when()}i=i||{};i.url=galaxy_config.root+"datasets/"+this.get("id")+"/purge_async";var j=this,k=jQuery.ajax(i);k.done(function(n,l,m){j.set({deleted:true,purged:true})});k.fail(function(p,l,o){var m=_l("Unable to purge dataset");var n=("Removal of datasets by users is not allowed in this Galaxy instance");if(p.responseJSON&&p.responseJSON.error){m=p.responseJSON.error}else{if(p.responseText.indexOf(n)!==-1){m=n}}p.responseText=m;j.trigger("error",j,p,i,_l(m),{error:m})});return k},searchAttributes:["name","file_ext","genome_build","misc_blurb","misc_info","annotation","tags"],searchAliases:{title:"name",format:"file_ext",database:"genome_build",blurb:"misc_blurb",description:"misc_blurb",info:"misc_info",tag:"tags"},searchAttribute:function(k,i){var j=this.get(k);if(!i||(j===undefined||j===null)){return false}if(_.isArray(j)){return this._searchArrayAttribute(j,i)}return(j.toString().toLowerCase().indexOf(i.toLowerCase())!==-1)},_searchArrayAttribute:function(j,i){i=i.toLowerCase();return _.any(j,function(k){return(k.toString().toLowerCase().indexOf(i.toLowerCase())!==-1)})},search:function(i){var j=this;return _.filter(this.searchAttributes,function(k){return j.searchAttribute(k,i)})},matches:function(j){var l="=",i=j.split(l);if(i.length>=2){var k=i[0];k=this.searchAliases[k]||k;return this.searchAttribute(k,i[1])}return !!this.search(j).length},matchesAll:function(j){var i=this;j=j.match(/(".*"|\w*=".*"|\S*)/g).filter(function(k){return !!k});return _.all(j,function(k){k=k.replace(/"/g,"");return i.matches(k)})},toString:function(){var i=this.get("id")||"";if(this.get("name")){i=this.get("hid")+' :"'+this.get("name")+'",'+i}return"HDA("+i+")"}});e.STATES={UPLOAD:"upload",QUEUED:"queued",RUNNING:"running",SETTING_METADATA:"setting_metadata",NEW:"new",EMPTY:"empty",OK:"ok",PAUSED:"paused",FAILED_METADATA:"failed_metadata",NOT_VIEWABLE:"noPermission",DISCARDED:"discarded",ERROR:"error"};e.READY_STATES=[e.STATES.NEW,e.STATES.OK,e.STATES.EMPTY,e.STATES.PAUSED,e.STATES.FAILED_METADATA,e.STATES.NOT_VIEWABLE,e.STATES.DISCARDED,e.STATES.ERROR];e.NOT_READY_STATES=[e.STATES.UPLOAD,e.STATES.QUEUED,e.STATES.RUNNING,e.STATES.SETTING_METADATA];var f=Backbone.Collection.extend(b.LoggableMixin).extend({model:e,urlRoot:galaxy_config.root+"api/histories",url:function(){return this.urlRoot+"/"+this.historyId+"/contents"},initialize:function(j,i){i=i||{};this.historyId=i.historyId},ids:function(){return this.map(function(i){return i.id})},notReady:function(){return this.filter(function(i){return !i.inReadyState()})},running:function(){var i=[];this.each(function(j){if(!j.inReadyState()){i.push(j.get("id"))}});return i},getByHid:function(i){return _.first(this.filter(function(j){return j.get("hid")===i}))},getVisible:function(i,l,k){k=k||[];var j=new f(this.filter(function(m){return m.isVisible(i,l)}));_.each(k,function(m){if(!_.isFunction(m)){return}j=new f(j.filter(m))});return j},haveDetails:function(){return this.all(function(i){return i.hasDetails()})},fetchAllDetails:function(j){j=j||{};var i={details:"all"};j.data=(j.data)?(_.extend(j.data,i)):(i);return this.fetch(j)},ajaxQueue:function(l,k){var j=jQuery.Deferred(),i=this.length,n=[];if(!i){j.resolve([]);return j}var m=this.chain().reverse().map(function(p,o){return function(){var q=l.call(p,k);q.done(function(r){j.notify({curr:o,total:i,response:r,model:p})});q.always(function(r){n.push(r);if(m.length){m.shift()()}else{j.resolve(n)}})}}).value();m.shift()();return j},matches:function(i){return this.filter(function(j){return j.matches(i)})},set:function(k,i){var j=this;k=_.map(k,function(m){var n=j.get(m.id);if(!n){return m}var l=n.toJSON();_.extend(l,m);return l});Backbone.Collection.prototype.set.call(this,k,i)},toString:function(){return(["HDACollection(",[this.historyId,this.length].join(),")"].join(""))}});return{HistoryDatasetAssociation:e,HDACollection:f}}); \ No newline at end of file diff --git a/static/scripts/packed/mvc/history/current-history-panel.js b/static/scripts/packed/mvc/history/current-history-panel.js index 318bce17724..91d600e77a1 100644 --- a/static/scripts/packed/mvc/history/current-history-panel.js +++ b/static/scripts/packed/mvc/history/current-history-panel.js @@ -1 +1 @@ -define(["mvc/dataset/hda-edit","mvc/history/history-panel"],function(b,e){var c=SessionStorageModel.extend({defaults:{searching:false,tagsEditorShown:false,annotationEditorShown:false},toString:function(){return"HistoryPanelPrefs("+JSON.stringify(this.toJSON())+")"}});c.storageKey=function d(){return("history-panel")};var a=e.HistoryPanel.extend({HDAViewClass:b.HDAEditView,emptyMsg:_l("This history is empty. Click 'Get Data' on the left tool menu to start"),noneFoundMsg:_l("No matching datasets found"),initialize:function(f){f=f||{};this.preferences=new c(_.extend({id:c.storageKey()},_.pick(f,_.keys(c.prototype.defaults))));e.HistoryPanel.prototype.initialize.call(this,f)},loadCurrentHistory:function(g){var f=this;return this.loadHistoryWithHDADetails("current",g).then(function(i,h){f.trigger("current-history",f)})},switchToHistory:function(i,h){var f=this,g=function(){return jQuery.post(galaxy_config.root+"api/histories/"+i+"/set_as_current")};return this.loadHistoryWithHDADetails(i,h,g).then(function(k,j){f.trigger("switched-history",f)})},createNewHistory:function(h){if(!Galaxy||!Galaxy.currUser||Galaxy.currUser.isAnonymous()){this.displayMessage("error",_l("You must be logged in to create histories"));return $.when()}var f=this,g=function(){return jQuery.post(galaxy_config.root+"api/histories",{current:true})};return this.loadHistory(undefined,h,g).then(function(j,i){f.trigger("new-history",f)})},setModel:function(g,f,h){e.HistoryPanel.prototype.setModel.call(this,g,f,h);if(this.model){this.log("checking for updates");this.model.checkForUpdates()}return this},_setUpModelEventHandlers:function(){e.HistoryPanel.prototype._setUpModelEventHandlers.call(this);if(Galaxy&&Galaxy.quotaMeter){this.listenTo(this.model,"change:nice_size",function(){Galaxy.quotaMeter.update()})}this.model.hdas.on("state:ready",function(g,h,f){if((!g.get("visible"))&&(!this.storage.get("show_hidden"))){this.removeHdaView(this.hdaViews[g.id])}},this)},render:function(h,i){h=(h===undefined)?(this.fxSpeed):(h);var f=this,g;if(this.model){g=this.renderModel()}else{g=this.renderWithoutModel()}$(f).queue("fx",[function(j){if(h&&f.$el.is(":visible")){f.$el.fadeOut(h,j)}else{j()}},function(j){f.$el.empty();if(g){f.$el.append(g.children());f.renderBasedOnPrefs()}j()},function(j){if(h&&!f.$el.is(":visible")){f.$el.fadeIn(h,j)}else{j()}},function(j){if(i){i.call(this)}f.trigger("rendered",this);j()}]);return this},renderBasedOnPrefs:function(){if(this.preferences.get("searching")){this.toggleSearchControls(0,true)}},_renderEmptyMsg:function(h){var g=this,f=g.$emptyMessage(h),i=$(".toolMenuContainer");if((_.isEmpty(g.hdaViews)&&!g.searchFor)&&(Galaxy&&Galaxy.upload&&i.size())){f.empty();f.html([_l("This history is empty. "),_l("You can "),'',_l("load your own data"),"",_l(" or "),'',_l("get data from an external source"),""].join(""));f.find(".uploader-link").click(function(j){Galaxy.upload._eventShow(j)});f.find(".get-data-link").click(function(j){i.parent().scrollTop(0);i.find('span:contains("Get Data")').click()});f.show()}else{e.HistoryPanel.prototype._renderEmptyMsg.call(this,h)}return this},toggleSearchControls:function(g,f){var h=e.HistoryPanel.prototype.toggleSearchControls.call(this,g,f);this.preferences.set("searching",h)},_renderTags:function(f){var g=this;e.HistoryPanel.prototype._renderTags.call(this,f);if(this.preferences.get("tagsEditorShown")){this.tagsEditor.toggle(true)}this.tagsEditor.on("hiddenUntilActivated:shown hiddenUntilActivated:hidden",function(h){g.preferences.set("tagsEditorShown",h.hidden)})},_renderAnnotation:function(f){var g=this;e.HistoryPanel.prototype._renderAnnotation.call(this,f);if(this.preferences.get("annotationEditorShown")){this.annotationEditor.toggle(true)}this.annotationEditor.on("hiddenUntilActivated:shown hiddenUntilActivated:hidden",function(h){g.preferences.set("annotationEditorShown",h.hidden)})},connectToQuotaMeter:function(f){if(!f){return this}this.listenTo(f,"quota:over",this.showQuotaMessage);this.listenTo(f,"quota:under",this.hideQuotaMessage);this.on("rendered rendered:initial",function(){if(f&&f.isOverQuota()){this.showQuotaMessage()}});return this},showQuotaMessage:function(){var f=this.$el.find(".quota-message");if(f.is(":hidden")){f.slideDown(this.fxSpeed)}},hideQuotaMessage:function(){var f=this.$el.find(".quota-message");if(!f.is(":hidden")){f.slideUp(this.fxSpeed)}},connectToOptionsMenu:function(f){if(!f){return this}this.on("new-storage",function(h,g){if(f&&h){f.findItemByHtml(_l("Include Deleted Datasets")).checked=h.get("show_deleted");f.findItemByHtml(_l("Include Hidden Datasets")).checked=h.get("show_hidden")}});return this},toString:function(){return"CurrentHistoryPanel("+((this.model)?(this.model.get("name")):(""))+")"}});return{CurrentHistoryPanel:a}}); \ No newline at end of file +define(["mvc/dataset/hda-edit","mvc/history/history-panel","mvc/base-mvc"],function(b,f,c){var d=c.SessionStorageModel.extend({defaults:{searching:false,tagsEditorShown:false,annotationEditorShown:false},toString:function(){return"HistoryPanelPrefs("+JSON.stringify(this.toJSON())+")"}});d.storageKey=function e(){return("history-panel")};var a=f.HistoryPanel.extend({HDAViewClass:b.HDAEditView,emptyMsg:_l("This history is empty. Click 'Get Data' on the left tool menu to start"),noneFoundMsg:_l("No matching datasets found"),initialize:function(g){g=g||{};this.preferences=new d(_.extend({id:d.storageKey()},_.pick(g,_.keys(d.prototype.defaults))));f.HistoryPanel.prototype.initialize.call(this,g)},loadCurrentHistory:function(h){var g=this;return this.loadHistoryWithHDADetails("current",h).then(function(j,i){g.trigger("current-history",g)})},switchToHistory:function(j,i){var g=this,h=function(){return jQuery.post(galaxy_config.root+"api/histories/"+j+"/set_as_current")};return this.loadHistoryWithHDADetails(j,i,h).then(function(l,k){g.trigger("switched-history",g)})},createNewHistory:function(i){if(!Galaxy||!Galaxy.currUser||Galaxy.currUser.isAnonymous()){this.displayMessage("error",_l("You must be logged in to create histories"));return $.when()}var g=this,h=function(){return jQuery.post(galaxy_config.root+"api/histories",{current:true})};return this.loadHistory(undefined,i,h).then(function(k,j){g.trigger("new-history",g)})},setModel:function(h,g,i){f.HistoryPanel.prototype.setModel.call(this,h,g,i);if(this.model){this.log("checking for updates");this.model.checkForUpdates()}return this},_setUpModelEventHandlers:function(){f.HistoryPanel.prototype._setUpModelEventHandlers.call(this);if(Galaxy&&Galaxy.quotaMeter){this.listenTo(this.model,"change:nice_size",function(){Galaxy.quotaMeter.update()})}this.model.hdas.on("state:ready",function(h,i,g){if((!h.get("visible"))&&(!this.storage.get("show_hidden"))){this.removeHdaView(this.hdaViews[h.id])}},this)},render:function(i,j){i=(i===undefined)?(this.fxSpeed):(i);var g=this,h;if(this.model){h=this.renderModel()}else{h=this.renderWithoutModel()}$(g).queue("fx",[function(k){if(i&&g.$el.is(":visible")){g.$el.fadeOut(i,k)}else{k()}},function(k){g.$el.empty();if(h){g.$el.append(h.children());g.renderBasedOnPrefs()}k()},function(k){if(i&&!g.$el.is(":visible")){g.$el.fadeIn(i,k)}else{k()}},function(k){if(j){j.call(this)}g.trigger("rendered",this);k()}]);return this},renderBasedOnPrefs:function(){if(this.preferences.get("searching")){this.toggleSearchControls(0,true)}},_renderEmptyMsg:function(i){var h=this,g=h.$emptyMessage(i),j=$(".toolMenuContainer");if((_.isEmpty(h.hdaViews)&&!h.searchFor)&&(Galaxy&&Galaxy.upload&&j.size())){g.empty();g.html([_l("This history is empty. "),_l("You can "),'',_l("load your own data"),"",_l(" or "),'',_l("get data from an external source"),""].join(""));g.find(".uploader-link").click(function(k){Galaxy.upload._eventShow(k)});g.find(".get-data-link").click(function(k){j.parent().scrollTop(0);j.find('span:contains("Get Data")').click()});g.show()}else{f.HistoryPanel.prototype._renderEmptyMsg.call(this,i)}return this},toggleSearchControls:function(h,g){var i=f.HistoryPanel.prototype.toggleSearchControls.call(this,h,g);this.preferences.set("searching",i)},_renderTags:function(g){var h=this;f.HistoryPanel.prototype._renderTags.call(this,g);if(this.preferences.get("tagsEditorShown")){this.tagsEditor.toggle(true)}this.tagsEditor.on("hiddenUntilActivated:shown hiddenUntilActivated:hidden",function(i){h.preferences.set("tagsEditorShown",i.hidden)})},_renderAnnotation:function(g){var h=this;f.HistoryPanel.prototype._renderAnnotation.call(this,g);if(this.preferences.get("annotationEditorShown")){this.annotationEditor.toggle(true)}this.annotationEditor.on("hiddenUntilActivated:shown hiddenUntilActivated:hidden",function(i){h.preferences.set("annotationEditorShown",i.hidden)})},connectToQuotaMeter:function(g){if(!g){return this}this.listenTo(g,"quota:over",this.showQuotaMessage);this.listenTo(g,"quota:under",this.hideQuotaMessage);this.on("rendered rendered:initial",function(){if(g&&g.isOverQuota()){this.showQuotaMessage()}});return this},showQuotaMessage:function(){var g=this.$el.find(".quota-message");if(g.is(":hidden")){g.slideDown(this.fxSpeed)}},hideQuotaMessage:function(){var g=this.$el.find(".quota-message");if(!g.is(":hidden")){g.slideUp(this.fxSpeed)}},connectToOptionsMenu:function(g){if(!g){return this}this.on("new-storage",function(i,h){if(g&&i){g.findItemByHtml(_l("Include Deleted Datasets")).checked=i.get("show_deleted");g.findItemByHtml(_l("Include Hidden Datasets")).checked=i.get("show_hidden")}});return this},toString:function(){return"CurrentHistoryPanel("+((this.model)?(this.model.get("name")):(""))+")"}});return{CurrentHistoryPanel:a}}); \ No newline at end of file diff --git a/static/scripts/packed/mvc/history/history-model.js b/static/scripts/packed/mvc/history/history-model.js index a6930c6ecd9..4a9c0ab5ac4 100644 --- a/static/scripts/packed/mvc/history/history-model.js +++ b/static/scripts/packed/mvc/history/history-model.js @@ -1 +1 @@ -define(["mvc/dataset/hda-model"],function(a){var c=Backbone.Model.extend(LoggableMixin).extend({defaults:{model_class:"History",id:null,name:"Unnamed History",state:"new",diskSize:0,deleted:false},urlRoot:galaxy_config.root+"api/histories",renameUrl:function(){var e=this.get("id");if(!e){return undefined}return galaxy_config.root+"history/rename_async?id="+this.get("id")},annotateUrl:function(){var e=this.get("id");if(!e){return undefined}return galaxy_config.root+"history/annotate_async?id="+this.get("id")},tagUrl:function(){var e=this.get("id");if(!e){return undefined}return galaxy_config.root+"tag/get_tagging_elt_async?item_id="+this.get("id")+"&item_class=History"},initialize:function(f,g,e){e=e||{};this.logger=e.logger||null;this.log(this+".initialize:",f,g,e);this.hdas=new a.HDACollection(g||[],{historyId:this.get("id")});if(g&&_.isArray(g)){this.hdas.reset(g)}this._setUpListeners();this.updateTimeoutId=null},_setUpListeners:function(){this.on("error",function(f,i,e,h,g){this.errorHandler(f,i,e,h,g)});if(this.hdas){this.listenTo(this.hdas,"error",function(){this.trigger.apply(this,["error:hdas"].concat(jQuery.makeArray(arguments)))})}this.on("change:id",function(f,e){if(this.hdas){this.hdas.historyId=e}},this)},errorHandler:function(f,i,e,h,g){this.clearUpdateTimeout()},hasUser:function(){var e=this.get("user");return !!(e&&e.id)},ownedByCurrUser:function(){if(!Galaxy||!Galaxy.currUser){return false}if(Galaxy.currUser.isAnonymous()||Galaxy.currUser.id!==this.get("user_id")){return false}return true},hdaCount:function(){return _.reduce(_.values(this.get("state_details")),function(e,f){return e+f},0)},checkForUpdates:function(e){if(this.hdas.running().length){this.setUpdateTimeout()}else{this.trigger("ready");if(_.isFunction(e)){e.call(this)}}return this},setUpdateTimeout:function(e){e=e||c.UPDATE_DELAY;var f=this;this.clearUpdateTimeout();this.updateTimeoutId=setTimeout(function(){f.refresh()},e);return this.updateTimeoutId},clearUpdateTimeout:function(){if(this.updateTimeoutId){clearTimeout(this.updateTimeoutId);this.updateTimeoutId=null}},refresh:function(f,e){f=f||[];e=e||{};var g=this;e.data=e.data||{};if(f.length){e.data.details=f.join(",")}var h=this.hdas.fetch(e);h.done(function(i){g.checkForUpdates(function(){this.fetch()})});return h},toString:function(){return"History("+this.get("id")+","+this.get("name")+")"}});c.UPDATE_DELAY=4000;c.getHistoryData=function d(f,p){p=p||{};var j=p.hdaDetailIds||[];var l=jQuery.Deferred(),k=null;function g(q){return jQuery.ajax(galaxy_config.root+"api/histories/"+f)}function e(q){if(!q||!q.state_ids){return 0}return _.reduce(q.state_ids,function(r,t,s){return r+t.length},0)}function o(r){if(!e(r)){return[]}if(_.isFunction(j)){j=j(r)}var q=(j.length)?({details:j.join(",")}):({});return jQuery.ajax(galaxy_config.root+"api/histories/"+r.id+"/contents",{data:q})}var n=p.historyFn||g,m=p.hdaFn||o;var i=n(f);i.done(function(q){k=q;l.notify({status:"history data retrieved",historyJSON:k})});i.fail(function(s,q,r){l.reject(s,"loading the history")});var h=i.then(m);h.then(function(q){l.notify({status:"dataset data retrieved",historyJSON:k,hdaJSON:q});l.resolve(k,q)});h.fail(function(s,q,r){l.reject(s,"loading the datasets",{history:k})});return l};var b=Backbone.Collection.extend(LoggableMixin).extend({model:c,urlRoot:galaxy_config.root+"api/histories"});return{History:c,HistoryCollection:b}}); \ No newline at end of file +define(["mvc/dataset/hda-model","mvc/base-mvc"],function(b,a){var d=Backbone.Model.extend(a.LoggableMixin).extend({defaults:{model_class:"History",id:null,name:"Unnamed History",state:"new",diskSize:0,deleted:false},urlRoot:galaxy_config.root+"api/histories",renameUrl:function(){var f=this.get("id");if(!f){return undefined}return galaxy_config.root+"history/rename_async?id="+this.get("id")},annotateUrl:function(){var f=this.get("id");if(!f){return undefined}return galaxy_config.root+"history/annotate_async?id="+this.get("id")},tagUrl:function(){var f=this.get("id");if(!f){return undefined}return galaxy_config.root+"tag/get_tagging_elt_async?item_id="+this.get("id")+"&item_class=History"},initialize:function(g,h,f){f=f||{};this.logger=f.logger||null;this.log(this+".initialize:",g,h,f);this.hdas=new b.HDACollection(h||[],{historyId:this.get("id")});if(h&&_.isArray(h)){this.hdas.reset(h)}this._setUpListeners();this.updateTimeoutId=null},_setUpListeners:function(){this.on("error",function(g,j,f,i,h){this.errorHandler(g,j,f,i,h)});if(this.hdas){this.listenTo(this.hdas,"error",function(){this.trigger.apply(this,["error:hdas"].concat(jQuery.makeArray(arguments)))})}this.on("change:id",function(g,f){if(this.hdas){this.hdas.historyId=f}},this)},errorHandler:function(g,j,f,i,h){this.clearUpdateTimeout()},ownedByCurrUser:function(){if(!Galaxy||!Galaxy.currUser){return false}if(Galaxy.currUser.isAnonymous()||Galaxy.currUser.id!==this.get("user_id")){return false}return true},hdaCount:function(){return _.reduce(_.values(this.get("state_details")),function(f,g){return f+g},0)},checkForUpdates:function(f){if(this.hdas.running().length){this.setUpdateTimeout()}else{this.trigger("ready");if(_.isFunction(f)){f.call(this)}}return this},setUpdateTimeout:function(f){f=f||d.UPDATE_DELAY;var g=this;this.clearUpdateTimeout();this.updateTimeoutId=setTimeout(function(){g.refresh()},f);return this.updateTimeoutId},clearUpdateTimeout:function(){if(this.updateTimeoutId){clearTimeout(this.updateTimeoutId);this.updateTimeoutId=null}},refresh:function(g,f){g=g||[];f=f||{};var h=this;f.data=f.data||{};if(g.length){f.data.details=g.join(",")}var i=this.hdas.fetch(f);i.done(function(j){h.checkForUpdates(function(){this.fetch()})});return i},toString:function(){return"History("+this.get("id")+","+this.get("name")+")"}});d.UPDATE_DELAY=4000;d.getHistoryData=function e(g,q){q=q||{};var k=q.hdaDetailIds||[];var m=jQuery.Deferred(),l=null;function h(r){return jQuery.ajax(galaxy_config.root+"api/histories/"+g)}function f(r){if(!r||!r.state_ids){return 0}return _.reduce(r.state_ids,function(s,u,t){return s+u.length},0)}function p(s){if(!f(s)){return[]}if(_.isFunction(k)){k=k(s)}var r=(k.length)?({details:k.join(",")}):({});return jQuery.ajax(galaxy_config.root+"api/histories/"+s.id+"/contents",{data:r})}var o=q.historyFn||h,n=q.hdaFn||p;var j=o(g);j.done(function(r){l=r;m.notify({status:"history data retrieved",historyJSON:l})});j.fail(function(t,r,s){m.reject(t,"loading the history")});var i=j.then(n);i.then(function(r){m.notify({status:"dataset data retrieved",historyJSON:l,hdaJSON:r});m.resolve(l,r)});i.fail(function(t,r,s){m.reject(t,"loading the datasets",{history:l})});return m};var c=Backbone.Collection.extend(a.LoggableMixin).extend({model:d,urlRoot:galaxy_config.root+"api/histories"});return{History:d,HistoryCollection:c}}); \ No newline at end of file diff --git a/static/scripts/packed/mvc/history/history-panel.js b/static/scripts/packed/mvc/history/history-panel.js index bb3a3b7ad6d..d7d247035e8 100644 --- a/static/scripts/packed/mvc/history/history-panel.js +++ b/static/scripts/packed/mvc/history/history-panel.js @@ -1 +1 @@ -define(["mvc/dataset/hda-model","mvc/dataset/hda-edit","mvc/history/readonly-history-panel","mvc/tags","mvc/annotations"],function(e,b,d,a,c){var f=d.ReadOnlyHistoryPanel.extend({HDAViewClass:b.HDAEditView,initialize:function(g){g=g||{};this.selectedHdaIds=[];this.tagsEditor=null;this.annotationEditor=null;this.selecting=g.selecting||false;this.annotationEditorShown=g.annotationEditorShown||false;this.tagsEditorShown=g.tagsEditorShown||false;d.ReadOnlyHistoryPanel.prototype.initialize.call(this,g)},_setUpModelEventHandlers:function(){d.ReadOnlyHistoryPanel.prototype._setUpModelEventHandlers.call(this);this.model.on("change:nice_size",this.updateHistoryDiskSize,this);this.model.hdas.on("change:deleted",this._handleHdaDeletionChange,this);this.model.hdas.on("change:visible",this._handleHdaVisibleChange,this);this.model.hdas.on("change:purged",function(g){this.model.fetch()},this)},renderModel:function(){var g=$("
");g.append(f.templates.historyPanel(this.model.toJSON()));this.$emptyMessage(g).text(this.emptyMsg);if(Galaxy.currUser.id&&Galaxy.currUser.id===this.model.get("user_id")){this._renderTags(g);this._renderAnnotation(g)}g.find(".history-secondary-actions").prepend(this._renderSelectButton());g.find(".history-dataset-actions").toggle(this.selecting);g.find(".history-secondary-actions").prepend(this._renderSearchButton());this._setUpBehaviours(g);this.renderHdas(g);return g},_renderTags:function(g){var h=this;this.tagsEditor=new a.TagsEditor({model:this.model,el:g.find(".history-controls .tags-display"),onshowFirstTime:function(){this.render()},onshow:function(){h.toggleHDATagEditors(true,h.fxSpeed)},onhide:function(){h.toggleHDATagEditors(false,h.fxSpeed)},$activator:faIconButton({title:_l("Edit history tags"),classes:"history-tag-btn",faIcon:"fa-tags"}).appendTo(g.find(".history-secondary-actions"))})},_renderAnnotation:function(g){var h=this;this.annotationEditor=new c.AnnotationEditor({model:this.model,el:g.find(".history-controls .annotation-display"),onshowFirstTime:function(){this.render()},onshow:function(){h.toggleHDAAnnotationEditors(true,h.fxSpeed)},onhide:function(){h.toggleHDAAnnotationEditors(false,h.fxSpeed)},$activator:faIconButton({title:_l("Edit history Annotation"),classes:"history-annotate-btn",faIcon:"fa-comment"}).appendTo(g.find(".history-secondary-actions"))})},_renderSelectButton:function(g){return faIconButton({title:_l("Operations on multiple datasets"),classes:"history-select-btn",faIcon:"fa-check-square-o"})},_setUpBehaviours:function(g){g=g||this.$el;d.ReadOnlyHistoryPanel.prototype._setUpBehaviours.call(this,g);if(!this.model){return}this._setUpDatasetActionsPopup(g);if((!Galaxy.currUser||Galaxy.currUser.isAnonymous())||(Galaxy.currUser.id!==this.model.get("user_id"))){return}var h=this;g.find(".history-name").attr("title",_l("Click to rename history")).tooltip({placement:"bottom"}).make_text_editable({on_finish:function(i){var j=h.model.get("name");if(i&&i!==j){h.$el.find(".history-name").text(i);h.model.save({name:i}).fail(function(){h.$el.find(".history-name").text(h.model.previous("name"))})}else{h.$el.find(".history-name").text(j)}}})},_setUpDatasetActionsPopup:function(g){var h=this;(new PopupMenu(g.find(".history-dataset-action-popup-btn"),[{html:_l("Hide datasets"),func:function(){var i=e.HistoryDatasetAssociation.prototype.hide;h.getSelectedHdaCollection().ajaxQueue(i)}},{html:_l("Unhide datasets"),func:function(){var i=e.HistoryDatasetAssociation.prototype.unhide;h.getSelectedHdaCollection().ajaxQueue(i)}},{html:_l("Delete datasets"),func:function(){var i=e.HistoryDatasetAssociation.prototype["delete"];h.getSelectedHdaCollection().ajaxQueue(i)}},{html:_l("Undelete datasets"),func:function(){var i=e.HistoryDatasetAssociation.prototype.undelete;h.getSelectedHdaCollection().ajaxQueue(i)}},{html:_l("Permanently delete datasets"),func:function(){if(confirm(_l("This will permanently remove the data in your datasets. Are you sure?"))){var i=e.HistoryDatasetAssociation.prototype.purge;h.getSelectedHdaCollection().ajaxQueue(i)}}}]))},_handleHdaDeletionChange:function(g){if(g.get("deleted")&&!this.storage.get("show_deleted")){this.removeHdaView(this.hdaViews[g.id])}},_handleHdaVisibleChange:function(g){if(g.hidden()&&!this.storage.get("show_hidden")){this.removeHdaView(this.hdaViews[g.id])}},_createHdaView:function(h){var g=h.get("id"),i=new this.HDAViewClass({model:h,linkTarget:this.linkTarget,expanded:this.storage.get("expandedHdas")[g],selectable:this.selecting,hasUser:this.model.ownedByCurrUser(),logger:this.logger,tagsEditorShown:(this.tagsEditor&&!this.tagsEditor.hidden),annotationEditorShown:(this.annotationEditor&&!this.annotationEditor.hidden)});this._setUpHdaListeners(i);return i},_setUpHdaListeners:function(h){var g=this;d.ReadOnlyHistoryPanel.prototype._setUpHdaListeners.call(this,h);h.on("selected",function(i){var j=i.model.get("id");g.selectedHdaIds=_.union(g.selectedHdaIds,[j])});h.on("de-selected",function(i){var j=i.model.get("id");g.selectedHdaIds=_.without(g.selectedHdaIds,j)})},toggleHDATagEditors:function(g){var h=arguments;_.each(this.hdaViews,function(i){if(i.tagsEditor){i.tagsEditor.toggle.apply(i.tagsEditor,h)}})},toggleHDAAnnotationEditors:function(g){var h=arguments;_.each(this.hdaViews,function(i){if(i.annotationEditor){i.annotationEditor.toggle.apply(i.annotationEditor,h)}})},removeHdaView:function(h){if(!h){return}var g=this;h.$el.fadeOut(g.fxSpeed,function(){h.off();h.remove();delete g.hdaViews[h.model.id];if(_.isEmpty(g.hdaViews)){g.$emptyMessage().fadeIn(g.fxSpeed,function(){g.trigger("empty-history",g)})}})},events:_.extend(_.clone(d.ReadOnlyHistoryPanel.prototype.events),{"click .history-select-btn":"toggleSelectors","click .history-select-all-datasets-btn":"selectAllDatasets","click .history-deselect-all-datasets-btn":"deselectAllDatasets"}),updateHistoryDiskSize:function(){this.$el.find(".history-size").text(this.model.get("nice_size"))},showSelectors:function(g){g=(g!==undefined)?(g):(this.fxSpeed);this.selecting=true;this.$(".history-dataset-actions").slideDown(g);_.each(this.hdaViews,function(h){h.showSelector()});this.selectedHdaIds=[]},hideSelectors:function(g){g=(g!==undefined)?(g):(this.fxSpeed);this.selecting=false;this.$(".history-dataset-actions").slideUp(g);_.each(this.hdaViews,function(h){h.hideSelector()});this.selectedHdaIds=[]},toggleSelectors:function(){if(!this.selecting){this.showSelectors()}else{this.hideSelectors()}},selectAllDatasets:function(g){_.each(this.hdaViews,function(h){h.select(g)})},deselectAllDatasets:function(g){_.each(this.hdaViews,function(h){h.deselect(g)})},getSelectedHdaViews:function(){return _.filter(this.hdaViews,function(g){return g.selected})},getSelectedHdaCollection:function(){return new e.HDACollection(_.map(this.getSelectedHdaViews(),function(g){return g.model}),{historyId:this.model.id})},toString:function(){return"HistoryPanel("+((this.model)?(this.model.get("name")):(""))+")"}});return{HistoryPanel:f}}); \ No newline at end of file +define(["mvc/dataset/hda-model","mvc/dataset/hda-edit","mvc/history/readonly-history-panel","mvc/tags","mvc/annotations"],function(e,b,d,a,c){var f=d.ReadOnlyHistoryPanel.extend({HDAViewClass:b.HDAEditView,initialize:function(g){g=g||{};this.selectedHdaIds=[];this.tagsEditor=null;this.annotationEditor=null;this.selecting=g.selecting||false;this.annotationEditorShown=g.annotationEditorShown||false;this.tagsEditorShown=g.tagsEditorShown||false;d.ReadOnlyHistoryPanel.prototype.initialize.call(this,g)},_setUpModelEventHandlers:function(){d.ReadOnlyHistoryPanel.prototype._setUpModelEventHandlers.call(this);this.model.on("change:nice_size",this.updateHistoryDiskSize,this);this.model.hdas.on("change:deleted",this._handleHdaDeletionChange,this);this.model.hdas.on("change:visible",this._handleHdaVisibleChange,this);this.model.hdas.on("change:purged",function(g){this.model.fetch()},this)},renderModel:function(){var g=$("
");g.append(f.templates.historyPanel(this.model.toJSON()));this.$emptyMessage(g).text(this.emptyMsg);if(Galaxy&&Galaxy.currUser&&Galaxy.currUser.id&&Galaxy.currUser.id===this.model.get("user_id")){this._renderTags(g);this._renderAnnotation(g)}g.find(".history-secondary-actions").prepend(this._renderSelectButton());g.find(".history-dataset-actions").toggle(this.selecting);g.find(".history-secondary-actions").prepend(this._renderSearchButton());this._setUpBehaviours(g);this.renderHdas(g);return g},_renderTags:function(g){var h=this;this.tagsEditor=new a.TagsEditor({model:this.model,el:g.find(".history-controls .tags-display"),onshowFirstTime:function(){this.render()},onshow:function(){h.toggleHDATagEditors(true,h.fxSpeed)},onhide:function(){h.toggleHDATagEditors(false,h.fxSpeed)},$activator:faIconButton({title:_l("Edit history tags"),classes:"history-tag-btn",faIcon:"fa-tags"}).appendTo(g.find(".history-secondary-actions"))})},_renderAnnotation:function(g){var h=this;this.annotationEditor=new c.AnnotationEditor({model:this.model,el:g.find(".history-controls .annotation-display"),onshowFirstTime:function(){this.render()},onshow:function(){h.toggleHDAAnnotationEditors(true,h.fxSpeed)},onhide:function(){h.toggleHDAAnnotationEditors(false,h.fxSpeed)},$activator:faIconButton({title:_l("Edit history Annotation"),classes:"history-annotate-btn",faIcon:"fa-comment"}).appendTo(g.find(".history-secondary-actions"))})},_renderSelectButton:function(g){return faIconButton({title:_l("Operations on multiple datasets"),classes:"history-select-btn",faIcon:"fa-check-square-o"})},_setUpBehaviours:function(g){g=g||this.$el;d.ReadOnlyHistoryPanel.prototype._setUpBehaviours.call(this,g);if(!this.model){return}this._setUpDatasetActionsPopup(g);if((!Galaxy.currUser||Galaxy.currUser.isAnonymous())||(Galaxy.currUser.id!==this.model.get("user_id"))){return}var h=this;g.find(".history-name").attr("title",_l("Click to rename history")).tooltip({placement:"bottom"}).make_text_editable({on_finish:function(i){var j=h.model.get("name");if(i&&i!==j){h.$el.find(".history-name").text(i);h.model.save({name:i}).fail(function(){h.$el.find(".history-name").text(h.model.previous("name"))})}else{h.$el.find(".history-name").text(j)}}})},_setUpDatasetActionsPopup:function(g){var h=this;(new PopupMenu(g.find(".history-dataset-action-popup-btn"),[{html:_l("Hide datasets"),func:function(){var i=e.HistoryDatasetAssociation.prototype.hide;h.getSelectedHdaCollection().ajaxQueue(i)}},{html:_l("Unhide datasets"),func:function(){var i=e.HistoryDatasetAssociation.prototype.unhide;h.getSelectedHdaCollection().ajaxQueue(i)}},{html:_l("Delete datasets"),func:function(){var i=e.HistoryDatasetAssociation.prototype["delete"];h.getSelectedHdaCollection().ajaxQueue(i)}},{html:_l("Undelete datasets"),func:function(){var i=e.HistoryDatasetAssociation.prototype.undelete;h.getSelectedHdaCollection().ajaxQueue(i)}},{html:_l("Permanently delete datasets"),func:function(){if(confirm(_l("This will permanently remove the data in your datasets. Are you sure?"))){var i=e.HistoryDatasetAssociation.prototype.purge;h.getSelectedHdaCollection().ajaxQueue(i)}}}]))},_handleHdaDeletionChange:function(g){if(g.get("deleted")&&!this.storage.get("show_deleted")){this.removeHdaView(this.hdaViews[g.id])}},_handleHdaVisibleChange:function(g){if(g.hidden()&&!this.storage.get("show_hidden")){this.removeHdaView(this.hdaViews[g.id])}},_createHdaView:function(h){var g=h.get("id"),i=new this.HDAViewClass({model:h,linkTarget:this.linkTarget,expanded:this.storage.get("expandedHdas")[g],selectable:this.selecting,hasUser:this.model.ownedByCurrUser(),logger:this.logger,tagsEditorShown:(this.tagsEditor&&!this.tagsEditor.hidden),annotationEditorShown:(this.annotationEditor&&!this.annotationEditor.hidden)});this._setUpHdaListeners(i);return i},_setUpHdaListeners:function(h){var g=this;d.ReadOnlyHistoryPanel.prototype._setUpHdaListeners.call(this,h);h.on("selected",function(i){var j=i.model.get("id");g.selectedHdaIds=_.union(g.selectedHdaIds,[j])});h.on("de-selected",function(i){var j=i.model.get("id");g.selectedHdaIds=_.without(g.selectedHdaIds,j)})},toggleHDATagEditors:function(g){var h=arguments;_.each(this.hdaViews,function(i){if(i.tagsEditor){i.tagsEditor.toggle.apply(i.tagsEditor,h)}})},toggleHDAAnnotationEditors:function(g){var h=arguments;_.each(this.hdaViews,function(i){if(i.annotationEditor){i.annotationEditor.toggle.apply(i.annotationEditor,h)}})},removeHdaView:function(h){if(!h){return}var g=this;h.$el.fadeOut(g.fxSpeed,function(){h.off();h.remove();delete g.hdaViews[h.model.id];if(_.isEmpty(g.hdaViews)){g.$emptyMessage().fadeIn(g.fxSpeed,function(){g.trigger("empty-history",g)})}})},events:_.extend(_.clone(d.ReadOnlyHistoryPanel.prototype.events),{"click .history-select-btn":"toggleSelectors","click .history-select-all-datasets-btn":"selectAllDatasets","click .history-deselect-all-datasets-btn":"deselectAllDatasets"}),updateHistoryDiskSize:function(){this.$el.find(".history-size").text(this.model.get("nice_size"))},showSelectors:function(g){g=(g!==undefined)?(g):(this.fxSpeed);this.selecting=true;this.$(".history-dataset-actions").slideDown(g);_.each(this.hdaViews,function(h){h.showSelector()});this.selectedHdaIds=[]},hideSelectors:function(g){g=(g!==undefined)?(g):(this.fxSpeed);this.selecting=false;this.$(".history-dataset-actions").slideUp(g);_.each(this.hdaViews,function(h){h.hideSelector()});this.selectedHdaIds=[]},toggleSelectors:function(){if(!this.selecting){this.showSelectors()}else{this.hideSelectors()}},selectAllDatasets:function(g){_.each(this.hdaViews,function(h){h.select(g)})},deselectAllDatasets:function(g){_.each(this.hdaViews,function(h){h.deselect(g)})},getSelectedHdaViews:function(){return _.filter(this.hdaViews,function(g){return g.selected})},getSelectedHdaCollection:function(){return new e.HDACollection(_.map(this.getSelectedHdaViews(),function(g){return g.model}),{historyId:this.model.id})},toString:function(){return"HistoryPanel("+((this.model)?(this.model.get("name")):(""))+")"}});return{HistoryPanel:f}}); \ No newline at end of file diff --git a/static/scripts/packed/mvc/history/readonly-history-panel.js b/static/scripts/packed/mvc/history/readonly-history-panel.js index c46cc4bd864..6c909b7154d 100644 --- a/static/scripts/packed/mvc/history/readonly-history-panel.js +++ b/static/scripts/packed/mvc/history/readonly-history-panel.js @@ -1 +1 @@ -define(["mvc/history/history-model","mvc/dataset/hda-base"],function(h,a){var g=SessionStorageModel.extend({defaults:{expandedHdas:{},show_deleted:false,show_hidden:false},addExpandedHda:function(j){var i="expandedHdas";this.save(i,_.extend(this.get(i),_.object([j],[true])))},removeExpandedHda:function(j){var i="expandedHdas";this.save(i,_.omit(this.get(i),j))},toString:function(){return"HistoryPrefs("+this.id+")"}});g.storageKeyPrefix="history:";g.historyStorageKey=function f(i){if(!i){throw new Error("HistoryPrefs.historyStorageKey needs valid id: "+i)}return(g.storageKeyPrefix+i)};g.get=function d(i){return new g({id:g.historyStorageKey(i)})};g.clearAll=function c(j){for(var i in sessionStorage){if(i.indexOf(g.storageKeyPrefix)===0){sessionStorage.removeItem(i)}}};var b=Backbone.View.extend(LoggableMixin).extend({HDAViewClass:a.HDABaseView,tagName:"div",className:"history-panel",fxSpeed:"fast",emptyMsg:_l("This history is empty"),noneFoundMsg:_l("No matching datasets found"),initialize:function(i){i=i||{};if(i.logger){this.logger=i.logger}this.log(this+".initialize:",i);this.linkTarget=i.linkTarget||"_blank";this.fxSpeed=_.has(i,"fxSpeed")?(i.fxSpeed):(this.fxSpeed);this.filters=[];this.searchFor="";this.findContainerFn=i.findContainerFn;this.hdaViews={};this.indicator=new LoadingIndicator(this.$el);this._setUpListeners();var j=_.pick(i,"initiallyExpanded","show_deleted","show_hidden");this.setModel(this.model,j,false);if(i.onready){i.onready.call(this)}},_setUpListeners:function(){this.on("error",function(j,m,i,l,k){this.errorHandler(j,m,i,l,k)});this.on("loading-history",function(){this._showLoadingIndicator("loading history...",40)});this.on("loading-done",function(){this._hideLoadingIndicator(40);if(_.isEmpty(this.hdaViews)){this.trigger("empty-history",this)}});this.once("rendered",function(){this.trigger("rendered:initial",this);return false});if(this.logger){this.on("all",function(i){this.log(this+"",arguments)},this)}return this},errorHandler:function(k,n,j,m,l){console.error(k,n,j,m,l);if(n&&n.status===0&&n.readyState===0){}else{if(n&&n.status===502){}else{var i=this._parseErrorMessage(k,n,j,m,l);if(!this.$messages().is(":visible")){this.once("rendered",function(){this.displayMessage("error",i.message,i.details)})}else{this.displayMessage("error",i.message,i.details)}}}},_parseErrorMessage:function(l,p,k,o,n){var j=Galaxy.currUser,i={message:this._bePolite(o),details:{user:(j instanceof User)?(j.toJSON()):(j+""),source:(l instanceof Backbone.Model)?(l.toJSON()):(l+""),xhr:p,options:(p)?(_.omit(k,"xhr")):(k)}};_.extend(i.details,n||{});if(p&&_.isFunction(p.getAllResponseHeaders)){var m=p.getAllResponseHeaders();m=_.compact(m.split("\n"));m=_.map(m,function(q){return q.split(": ")});i.details.xhr.responseHeaders=_.object(m)}return i},_bePolite:function(i){i=i||_l("An error occurred while getting updates from the server");return i+". "+_l("Please contact a Galaxy administrator if the problem persists.")},loadHistoryWithHDADetails:function(k,j,i,m){var l=function(n){return _.keys(g.get(n.id).get("expandedHdas"))};return this.loadHistory(k,j,i,m,l)},loadHistory:function(l,k,j,o,m){var i=this;k=k||{};i.trigger("loading-history",i);var n=h.History.getHistoryData(l,{historyFn:j,hdaFn:o,hdaDetailIds:k.initiallyExpanded||m});return i._loadHistoryFromXHR(n,k).fail(function(r,p,q){i.trigger("error",i,r,k,_l("An error was encountered while "+p),{historyId:l,history:q||{}})}).always(function(){i.trigger("loading-done",i)})},_loadHistoryFromXHR:function(k,j){var i=this;k.then(function(l,m){i.JSONToModel(l,m,j)});k.fail(function(m,l){i.render()});return k},JSONToModel:function(l,i,j){this.log("JSONToModel:",l,i,j);j=j||{};if(Galaxy&&Galaxy.currUser){l.user=Galaxy.currUser.toJSON()}var k=new h.History(l,i,j);this.setModel(k);return this},setModel:function(j,i,k){i=i||{};k=(k!==undefined)?(k):(true);this.log("setModel:",j,i,k);this.freeModel();this.selectedHdaIds=[];if(j){if(Galaxy&&Galaxy.currUser){j.user=Galaxy.currUser.toJSON()}this.model=j;if(this.logger){this.model.logger=this.logger}this._setUpWebStorage(i.initiallyExpanded,i.show_deleted,i.show_hidden);this._setUpModelEventHandlers();this.trigger("new-model",this)}if(k){this.render()}return this},freeModel:function(){if(this.model){this.model.clearUpdateTimeout();this.stopListening(this.model);this.stopListening(this.model.hdas)}this.freeHdaViews();return this},freeHdaViews:function(){this.hdaViews={};return this},_setUpWebStorage:function(j,i,k){this.storage=new g({id:g.historyStorageKey(this.model.get("id"))});if(_.isObject(j)){this.storage.set("exandedHdas",j)}if(_.isBoolean(i)){this.storage.set("show_deleted",i)}if(_.isBoolean(k)){this.storage.set("show_hidden",k)}this.trigger("new-storage",this.storage,this);this.log(this+" (init'd) storage:",this.storage.get());return this},_setUpModelEventHandlers:function(){this.model.hdas.on("add",this.addHdaView,this);this.model.on("error error:hdas",function(j,l,i,k){this.errorHandler(j,l,i,k)},this);return this},render:function(k,l){this.log("render:",k,l);k=(k===undefined)?(this.fxSpeed):(k);var i=this,j;if(this.model){j=this.renderModel()}else{j=this.renderWithoutModel()}$(i).queue("fx",[function(m){if(k&&i.$el.is(":visible")){i.$el.fadeOut(k,m)}else{m()}},function(m){i.$el.empty();if(j){i.$el.append(j.children())}m()},function(m){if(k&&!i.$el.is(":visible")){i.$el.fadeIn(k,m)}else{m()}},function(m){if(l){l.call(this)}i.trigger("rendered",this);m()}]);return this},renderWithoutModel:function(){var i=$("
"),j=$("
").addClass("message-container").css({"margin-left":"4px","margin-right":"4px"});return i.append(j)},renderModel:function(){var i=$("
");i.append(b.templates.historyPanel(this.model.toJSON()));this.$emptyMessage(i).text(this.emptyMsg);i.find(".history-secondary-actions").prepend(this._renderSearchButton());this._setUpBehaviours(i);this.renderHdas(i);return i},_renderEmptyMsg:function(k){var j=this,i=j.$emptyMessage(k);if(!_.isEmpty(j.hdaViews)){i.hide()}else{if(j.searchFor){i.text(j.noneFoundMsg).show()}else{i.text(j.emptyMsg).show()}}return this},_renderSearchButton:function(i){return faIconButton({title:_l("Search datasets"),classes:"history-search-btn",faIcon:"fa-search"})},_setUpBehaviours:function(i){i=i||this.$el;i.find("[title]").tooltip({placement:"bottom"});this._setUpSearchInput(i.find(".history-search-controls .history-search-input"));return this},$container:function(){return(this.findContainerFn)?(this.findContainerFn.call(this)):(this.$el.parent())},$datasetsList:function(i){return(i||this.$el).find(".datasets-list")},$messages:function(i){return(i||this.$el).find(".message-container")},$emptyMessage:function(i){return(i||this.$el).find(".empty-history-message")},renderHdas:function(j){j=j||this.$el;var i=this,l={},k=this.model.hdas.getVisible(this.storage.get("show_deleted"),this.storage.get("show_hidden"),this.filters);this.$datasetsList(j).empty();if(k.length){k.each(function(n){var m=n.get("id"),o=i._createHdaView(n);l[m]=o;if(_.contains(i.selectedHdaIds,m)){o.selected=true}i.attachHdaView(o.render(),j)})}this.hdaViews=l;this._renderEmptyMsg(j);return this.hdaViews},_createHdaView:function(j){var i=j.get("id"),k=new this.HDAViewClass({model:j,linkTarget:this.linkTarget,expanded:this.storage.get("expandedHdas")[i],hasUser:this.model.ownedByCurrUser(),logger:this.logger});this._setUpHdaListeners(k);return k},_setUpHdaListeners:function(j){var i=this;j.on("error",function(l,n,k,m){i.errorHandler(l,n,k,m)});j.on("body-expanded",function(k){i.storage.addExpandedHda(k)});j.on("body-collapsed",function(k){i.storage.removeExpandedHda(k)});return this},attachHdaView:function(k,j){j=j||this.$el;var i=this.$datasetsList(j);i.prepend(k.$el);return this},addHdaView:function(l){this.log("add."+this,l);var j=this;if(!l.isVisible(this.storage.get("show_deleted"),this.storage.get("show_hidden"))){return j}$({}).queue([function k(n){var m=j.$emptyMessage();if(m.is(":visible")){m.fadeOut(j.fxSpeed,n)}else{n()}},function i(m){var n=j._createHdaView(l);j.hdaViews[l.id]=n;n.render().$el.hide();j.scrollToTop();j.attachHdaView(n);n.$el.slideDown(j.fxSpeed)}]);return j},refreshHdas:function(j,i){if(this.model){return this.model.refresh(j,i)}return $.when()},events:{"click .message-container":"clearMessages","click .history-search-btn":"toggleSearchControls"},collapseAllHdaBodies:function(){_.each(this.hdaViews,function(i){i.toggleBodyVisibility(null,false)});this.storage.set("expandedHdas",{});return this},toggleShowDeleted:function(i){i=(i!==undefined)?(i):(!this.storage.get("show_deleted"));this.storage.set("show_deleted",i);this.renderHdas();return this.storage.get("show_deleted")},toggleShowHidden:function(i){i=(i!==undefined)?(i):(!this.storage.get("show_hidden"));this.storage.set("show_hidden",i);this.renderHdas();return this.storage.get("show_hidden")},_setUpSearchInput:function(j){var k=this,l=".history-search-input";function i(m){if(k.model.hdas.haveDetails()){k.searchHdas(m);return}k.$el.find(l).searchInput("toggle-loading");k.model.hdas.fetchAllDetails({silent:true}).always(function(){k.$el.find(l).searchInput("toggle-loading")}).done(function(){k.searchHdas(m)})}j.searchInput({initialVal:k.searchFor,name:"history-search",placeholder:"search datasets",classes:"history-search",onfirstsearch:i,onsearch:_.bind(this.searchHdas,this),onclear:_.bind(this.clearHdaSearch,this)});return j},toggleSearchControls:function(k,i){var j=this.$el.find(".history-search-controls"),l=(jQuery.type(k)==="number")?(k):(this.fxSpeed);i=(i!==undefined)?(i):(!j.is(":visible"));if(i){j.slideDown(l,function(){$(this).find("input").focus()})}else{j.slideUp(l)}return i},searchHdas:function(i){var j=this;this.searchFor=i;this.filters=[function(k){return k.matchesAll(j.searchFor)}];this.trigger("search:searching",i,this);this.renderHdas();return this},clearHdaSearch:function(i){this.searchFor="";this.filters=[];this.trigger("search:clear",this);this.renderHdas();return this},_showLoadingIndicator:function(j,i,k){i=(i!==undefined)?(i):(this.fxSpeed);if(!this.indicator){this.indicator=new LoadingIndicator(this.$el,this.$el.parent())}if(!this.$el.is(":visible")){this.indicator.show(0,k)}else{this.$el.fadeOut(i);this.indicator.show(j,i,k)}},_hideLoadingIndicator:function(i,j){i=(i!==undefined)?(i):(this.fxSpeed);if(this.indicator){this.indicator.hide(i,j)}},displayMessage:function(n,o,m){var k=this;this.scrollToTop();var l=this.$messages(),i=$("
").addClass(n+"message").html(o);if(!_.isEmpty(m)){var j=$('Details').click(function(){Galaxy.modal.show(k._messageToModalOptions(n,o,m));return false});i.append(" ",j)}return l.html(i)},_messageToModalOptions:function(m,o,l){var i=this,n=$("
"),k={title:"Details"};function j(p){p=_.omit(p,_.functions(p));return["
",d,"",e,"
",b,"",a[0],"",a[1],"
",_.map(p,function(r,q){r=(_.isObject(r))?(j(r)):(r);return'"}).join(""),"
'+q+''+r+"
"].join("")}if(_.isObject(l)){k.body=n.append(j(l))}else{k.body=n.html(l)}k.buttons={Ok:function(){Galaxy.modal.hide();i.clearMessages()}};return k},clearMessages:function(){this.$messages().empty();return this},scrollPosition:function(){return this.$container().scrollTop()},scrollTo:function(i){this.$container().scrollTop(i);return this},scrollToTop:function(){this.$container().scrollTop(0);return this},scrollToId:function(j){if((!j)||(!this.hdaViews[j])){return this}var i=this.hdaViews[j];this.scrollTo(i.el.offsetTop);return this},scrollToHid:function(i){var j=this.model.hdas.getByHid(i);if(!j){return this}return this.scrollToId(j.id)},toString:function(){return"ReadOnlyHistoryPanel("+((this.model)?(this.model.get("name")):(""))+")"}});var e=['
','
','
',"
",'
',"<% if( history.name ){ %>",'
<%= history.name %>
',"<% } %>","
",'
',"<% if( history.nice_size ){ %>",'
<%= history.nice_size %>
',"<% } %>",'
',"
","<% if( history.deleted ){ %>",'
',_l("You are currently viewing a deleted history!"),"
","<% } %>",'
',"<% if( history.message ){ %>",'
<%= history.message %>
',"<% } %>","
",'
',_l("You are over your disk quota."),_l("Tool execution is on hold until your disk usage drops below your allocated quota."),"
",'
','
','
','
','",'","
",'","
","
",'
','
',_l("Your history is empty. Click 'Get Data' on the left pane to start"),"
"].join("");b.templates={historyPanel:function(i){return _.template(e,i,{variable:"history"})}};return{ReadOnlyHistoryPanel:b}}); \ No newline at end of file +define(["mvc/history/history-model","mvc/dataset/hda-base","mvc/base-mvc"],function(e,a,d){var g=d.SessionStorageModel.extend({defaults:{expandedHdas:{},show_deleted:false,show_hidden:false},addExpandedHda:function(k){var j="expandedHdas";this.save(j,_.extend(this.get(j),_.object([k],[true])))},removeExpandedHda:function(k){var j="expandedHdas";this.save(j,_.omit(this.get(j),k))},toString:function(){return"HistoryPrefs("+this.id+")"}});g.storageKeyPrefix="history:";g.historyStorageKey=function c(j){if(!j){throw new Error("HistoryPrefs.historyStorageKey needs valid id: "+j)}return(g.storageKeyPrefix+j)};g.get=function b(j){return new g({id:g.historyStorageKey(j)})};g.clearAll=function f(k){for(var j in sessionStorage){if(j.indexOf(g.storageKeyPrefix)===0){sessionStorage.removeItem(j)}}};var h=Backbone.View.extend(d.LoggableMixin).extend({HDAViewClass:a.HDABaseView,tagName:"div",className:"history-panel",fxSpeed:"fast",emptyMsg:_l("This history is empty"),noneFoundMsg:_l("No matching datasets found"),initialize:function(j){j=j||{};if(j.logger){this.logger=j.logger}this.log(this+".initialize:",j);this.linkTarget=j.linkTarget||"_blank";this.fxSpeed=_.has(j,"fxSpeed")?(j.fxSpeed):(this.fxSpeed);this.filters=[];this.searchFor="";this.findContainerFn=j.findContainerFn;this.hdaViews={};this.indicator=new LoadingIndicator(this.$el);this._setUpListeners();var k=_.pick(j,"initiallyExpanded","show_deleted","show_hidden");this.setModel(this.model,k,false);if(j.onready){j.onready.call(this)}},_setUpListeners:function(){this.on("error",function(k,n,j,m,l){this.errorHandler(k,n,j,m,l)});this.on("loading-history",function(){this._showLoadingIndicator("loading history...",40)});this.on("loading-done",function(){this._hideLoadingIndicator(40);if(_.isEmpty(this.hdaViews)){this.trigger("empty-history",this)}});this.once("rendered",function(){this.trigger("rendered:initial",this);return false});if(this.logger){this.on("all",function(j){this.log(this+"",arguments)},this)}return this},errorHandler:function(l,o,k,n,m){console.error(l,o,k,n,m);if(o&&o.status===0&&o.readyState===0){}else{if(o&&o.status===502){}else{var j=this._parseErrorMessage(l,o,k,n,m);if(!this.$messages().is(":visible")){this.once("rendered",function(){this.displayMessage("error",j.message,j.details)})}else{this.displayMessage("error",j.message,j.details)}}}},_parseErrorMessage:function(m,q,l,p,o){var k=Galaxy.currUser,j={message:this._bePolite(p),details:{user:(k instanceof User)?(k.toJSON()):(k+""),source:(m instanceof Backbone.Model)?(m.toJSON()):(m+""),xhr:q,options:(q)?(_.omit(l,"xhr")):(l)}};_.extend(j.details,o||{});if(q&&_.isFunction(q.getAllResponseHeaders)){var n=q.getAllResponseHeaders();n=_.compact(n.split("\n"));n=_.map(n,function(r){return r.split(": ")});j.details.xhr.responseHeaders=_.object(n)}return j},_bePolite:function(j){j=j||_l("An error occurred while getting updates from the server");return j+". "+_l("Please contact a Galaxy administrator if the problem persists.")},loadHistoryWithHDADetails:function(l,k,j,n){var m=function(o){return _.keys(g.get(o.id).get("expandedHdas"))};return this.loadHistory(l,k,j,n,m)},loadHistory:function(m,l,k,p,n){var j=this;l=l||{};j.trigger("loading-history",j);var o=e.History.getHistoryData(m,{historyFn:k,hdaFn:p,hdaDetailIds:l.initiallyExpanded||n});return j._loadHistoryFromXHR(o,l).fail(function(s,q,r){j.trigger("error",j,s,l,_l("An error was encountered while "+q),{historyId:m,history:r||{}})}).always(function(){j.trigger("loading-done",j)})},_loadHistoryFromXHR:function(l,k){var j=this;l.then(function(m,n){j.JSONToModel(m,n,k)});l.fail(function(n,m){j.render()});return l},JSONToModel:function(m,j,k){this.log("JSONToModel:",m,j,k);k=k||{};var l=new e.History(m,j,k);this.setModel(l);return this},setModel:function(k,j,l){j=j||{};l=(l!==undefined)?(l):(true);this.log("setModel:",k,j,l);this.freeModel();this.selectedHdaIds=[];if(k){this.model=k;if(this.logger){this.model.logger=this.logger}this._setUpWebStorage(j.initiallyExpanded,j.show_deleted,j.show_hidden);this._setUpModelEventHandlers();this.trigger("new-model",this)}if(l){this.render()}return this},freeModel:function(){if(this.model){this.model.clearUpdateTimeout();this.stopListening(this.model);this.stopListening(this.model.hdas)}this.freeHdaViews();return this},freeHdaViews:function(){this.hdaViews={};return this},_setUpWebStorage:function(k,j,l){this.storage=new g({id:g.historyStorageKey(this.model.get("id"))});if(_.isObject(k)){this.storage.set("exandedHdas",k)}if(_.isBoolean(j)){this.storage.set("show_deleted",j)}if(_.isBoolean(l)){this.storage.set("show_hidden",l)}this.trigger("new-storage",this.storage,this);this.log(this+" (init'd) storage:",this.storage.get());return this},_setUpModelEventHandlers:function(){this.model.hdas.on("add",this.addHdaView,this);this.model.on("error error:hdas",function(k,m,j,l){this.errorHandler(k,m,j,l)},this);return this},render:function(l,m){this.log("render:",l,m);l=(l===undefined)?(this.fxSpeed):(l);var j=this,k;if(this.model){k=this.renderModel()}else{k=this.renderWithoutModel()}$(j).queue("fx",[function(n){if(l&&j.$el.is(":visible")){j.$el.fadeOut(l,n)}else{n()}},function(n){j.$el.empty();if(k){j.$el.append(k.children())}n()},function(n){if(l&&!j.$el.is(":visible")){j.$el.fadeIn(l,n)}else{n()}},function(n){if(m){m.call(this)}j.trigger("rendered",this);n()}]);return this},renderWithoutModel:function(){var j=$("
"),k=$("
").addClass("message-container").css({"margin-left":"4px","margin-right":"4px"});return j.append(k)},renderModel:function(){var j=$("
");j.append(h.templates.historyPanel(this.model.toJSON()));this.$emptyMessage(j).text(this.emptyMsg);j.find(".history-secondary-actions").prepend(this._renderSearchButton());this._setUpBehaviours(j);this.renderHdas(j);return j},_renderEmptyMsg:function(l){var k=this,j=k.$emptyMessage(l);if(!_.isEmpty(k.hdaViews)){j.hide()}else{if(k.searchFor){j.text(k.noneFoundMsg).show()}else{j.text(k.emptyMsg).show()}}return this},_renderSearchButton:function(j){return faIconButton({title:_l("Search datasets"),classes:"history-search-btn",faIcon:"fa-search"})},_setUpBehaviours:function(j){j=j||this.$el;j.find("[title]").tooltip({placement:"bottom"});this._setUpSearchInput(j.find(".history-search-controls .history-search-input"));return this},$container:function(){return(this.findContainerFn)?(this.findContainerFn.call(this)):(this.$el.parent())},$datasetsList:function(j){return(j||this.$el).find(".datasets-list")},$messages:function(j){return(j||this.$el).find(".message-container")},$emptyMessage:function(j){return(j||this.$el).find(".empty-history-message")},renderHdas:function(k){k=k||this.$el;var j=this,m={},l=this.model.hdas.getVisible(this.storage.get("show_deleted"),this.storage.get("show_hidden"),this.filters);this.$datasetsList(k).empty();if(l.length){l.each(function(o){var n=o.get("id"),p=j._createHdaView(o);m[n]=p;if(_.contains(j.selectedHdaIds,n)){p.selected=true}j.attachHdaView(p.render(),k)})}this.hdaViews=m;this._renderEmptyMsg(k);return this.hdaViews},_createHdaView:function(k){var j=k.get("id"),l=new this.HDAViewClass({model:k,linkTarget:this.linkTarget,expanded:this.storage.get("expandedHdas")[j],hasUser:this.model.ownedByCurrUser(),logger:this.logger});this._setUpHdaListeners(l);return l},_setUpHdaListeners:function(k){var j=this;k.on("error",function(m,o,l,n){j.errorHandler(m,o,l,n)});k.on("body-expanded",function(l){j.storage.addExpandedHda(l)});k.on("body-collapsed",function(l){j.storage.removeExpandedHda(l)});return this},attachHdaView:function(l,k){k=k||this.$el;var j=this.$datasetsList(k);j.prepend(l.$el);return this},addHdaView:function(m){this.log("add."+this,m);var k=this;if(!m.isVisible(this.storage.get("show_deleted"),this.storage.get("show_hidden"))){return k}$({}).queue([function l(o){var n=k.$emptyMessage();if(n.is(":visible")){n.fadeOut(k.fxSpeed,o)}else{o()}},function j(n){var o=k._createHdaView(m);k.hdaViews[m.id]=o;o.render().$el.hide();k.scrollToTop();k.attachHdaView(o);o.$el.slideDown(k.fxSpeed)}]);return k},refreshHdas:function(k,j){if(this.model){return this.model.refresh(k,j)}return $.when()},events:{"click .message-container":"clearMessages","click .history-search-btn":"toggleSearchControls"},collapseAllHdaBodies:function(){_.each(this.hdaViews,function(j){j.toggleBodyVisibility(null,false)});this.storage.set("expandedHdas",{});return this},toggleShowDeleted:function(j){j=(j!==undefined)?(j):(!this.storage.get("show_deleted"));this.storage.set("show_deleted",j);this.renderHdas();return this.storage.get("show_deleted")},toggleShowHidden:function(j){j=(j!==undefined)?(j):(!this.storage.get("show_hidden"));this.storage.set("show_hidden",j);this.renderHdas();return this.storage.get("show_hidden")},_setUpSearchInput:function(k){var l=this,m=".history-search-input";function j(n){if(l.model.hdas.haveDetails()){l.searchHdas(n);return}l.$el.find(m).searchInput("toggle-loading");l.model.hdas.fetchAllDetails({silent:true}).always(function(){l.$el.find(m).searchInput("toggle-loading")}).done(function(){l.searchHdas(n)})}k.searchInput({initialVal:l.searchFor,name:"history-search",placeholder:"search datasets",classes:"history-search",onfirstsearch:j,onsearch:_.bind(this.searchHdas,this),onclear:_.bind(this.clearHdaSearch,this)});return k},toggleSearchControls:function(l,j){var k=this.$el.find(".history-search-controls"),m=(jQuery.type(l)==="number")?(l):(this.fxSpeed);j=(j!==undefined)?(j):(!k.is(":visible"));if(j){k.slideDown(m,function(){$(this).find("input").focus()})}else{k.slideUp(m)}return j},searchHdas:function(j){var k=this;this.searchFor=j;this.filters=[function(l){return l.matchesAll(k.searchFor)}];this.trigger("search:searching",j,this);this.renderHdas();return this},clearHdaSearch:function(j){this.searchFor="";this.filters=[];this.trigger("search:clear",this);this.renderHdas();return this},_showLoadingIndicator:function(k,j,l){j=(j!==undefined)?(j):(this.fxSpeed);if(!this.indicator){this.indicator=new LoadingIndicator(this.$el,this.$el.parent())}if(!this.$el.is(":visible")){this.indicator.show(0,l)}else{this.$el.fadeOut(j);this.indicator.show(k,j,l)}},_hideLoadingIndicator:function(j,k){j=(j!==undefined)?(j):(this.fxSpeed);if(this.indicator){this.indicator.hide(j,k)}},displayMessage:function(o,p,n){var l=this;this.scrollToTop();var m=this.$messages(),j=$("
").addClass(o+"message").html(p);if(!_.isEmpty(n)){var k=$('Details').click(function(){Galaxy.modal.show(l._messageToModalOptions(o,p,n));return false});j.append(" ",k)}return m.html(j)},_messageToModalOptions:function(n,p,m){var j=this,o=$("
"),l={title:"Details"};function k(q){q=_.omit(q,_.functions(q));return["",_.map(q,function(s,r){s=(_.isObject(s))?(k(s)):(s);return'"}).join(""),"
'+r+''+s+"
"].join("")}if(_.isObject(m)){l.body=o.append(k(m))}else{l.body=o.html(m)}l.buttons={Ok:function(){Galaxy.modal.hide();j.clearMessages()}};return l},clearMessages:function(){this.$messages().empty();return this},scrollPosition:function(){return this.$container().scrollTop()},scrollTo:function(j){this.$container().scrollTop(j);return this},scrollToTop:function(){this.$container().scrollTop(0);return this},scrollToId:function(k){if((!k)||(!this.hdaViews[k])){return this}var j=this.hdaViews[k];this.scrollTo(j.el.offsetTop);return this},scrollToHid:function(j){var k=this.model.hdas.getByHid(j);if(!k){return this}return this.scrollToId(k.id)},toString:function(){return"ReadOnlyHistoryPanel("+((this.model)?(this.model.get("name")):(""))+")"}});var i=['
','
','
',"
",'
',"<% if( history.name ){ %>",'
<%= history.name %>
',"<% } %>","
",'
',"<% if( history.nice_size ){ %>",'
<%= history.nice_size %>
',"<% } %>",'
',"
","<% if( history.deleted ){ %>",'
',_l("You are currently viewing a deleted history!"),"
","<% } %>",'
',"<% if( history.message ){ %>",'
<%= history.message %>
',"<% } %>","
",'
',_l("You are over your disk quota."),_l("Tool execution is on hold until your disk usage drops below your allocated quota."),"
",'
','
','
','
','",'","
",'","
","
",'
','
',_l("Your history is empty. Click 'Get Data' on the left pane to start"),"
"].join("");h.templates={historyPanel:function(j){return _.template(i,j,{variable:"history"})}};return{ReadOnlyHistoryPanel:h}}); \ No newline at end of file diff --git a/static/scripts/packed/mvc/tags.js b/static/scripts/packed/mvc/tags.js index 00d40e3d7a2..6207be60746 100644 --- a/static/scripts/packed/mvc/tags.js +++ b/static/scripts/packed/mvc/tags.js @@ -1 +1 @@ -define([],function(){var a=Backbone.View.extend(LoggableMixin).extend(HiddenUntilActivatedViewMixin).extend({tagName:"div",className:"tags-display",initialize:function(b){this.listenTo(this.model,"change:tags",function(){this.render()});this.hiddenUntilActivated(b.$activator,b)},render:function(){var b=this;this.$el.html(this._template());this.$input().select2({placeholder:"Add tags",width:"100%",tags:function(){return b._getTagsUsed()}});this._setUpBehaviors();return this},_template:function(){return['",''].join("")},tagsToCSV:function(){var b=this.model.get("tags");if(!_.isArray(b)||_.isEmpty(b)){return""}return b.sort().join(",")},$input:function(){return this.$el.find("input.tags-input")},_getTagsUsed:function(){return Galaxy.currUser.get("tags_used")},_setUpBehaviors:function(){var b=this;this.$input().on("change",function(c){b.model.save({tags:c.val},{silent:true});if(c.added){b._addNewTagToTagsUsed(c.added.text+"")}})},_addNewTagToTagsUsed:function(b){var c=Galaxy.currUser.get("tags_used");if(!_.contains(c,b)){c.push(b);c.sort();Galaxy.currUser.set("tags_used",c)}},remove:function(){this.$input.off();this.stopListening(this.model);Backbone.View.prototype.remove.call(this)},toString:function(){return["TagsEditor(",this.model+"",")"].join("")}});return{TagsEditor:a}}); \ No newline at end of file +define(["mvc/base-mvc"],function(a){var b=Backbone.View.extend(a.LoggableMixin).extend(a.HiddenUntilActivatedViewMixin).extend({tagName:"div",className:"tags-display",initialize:function(c){this.listenTo(this.model,"change:tags",function(){this.render()});this.hiddenUntilActivated(c.$activator,c)},render:function(){var c=this;this.$el.html(this._template());this.$input().select2({placeholder:"Add tags",width:"100%",tags:function(){return c._getTagsUsed()}});this._setUpBehaviors();return this},_template:function(){return['",''].join("")},tagsToCSV:function(){var c=this.model.get("tags");if(!_.isArray(c)||_.isEmpty(c)){return""}return c.sort().join(",")},$input:function(){return this.$el.find("input.tags-input")},_getTagsUsed:function(){return Galaxy.currUser.get("tags_used")},_setUpBehaviors:function(){var c=this;this.$input().on("change",function(d){c.model.save({tags:d.val},{silent:true});if(d.added){c._addNewTagToTagsUsed(d.added.text+"")}})},_addNewTagToTagsUsed:function(c){var d=Galaxy.currUser.get("tags_used");if(!_.contains(d,c)){d.push(c);d.sort();Galaxy.currUser.set("tags_used",d)}},remove:function(){this.$input.off();this.stopListening(this.model);Backbone.View.prototype.remove.call(this)},toString:function(){return["TagsEditor(",this.model+"",")"].join("")}});return{TagsEditor:b}}); \ No newline at end of file diff --git a/static/scripts/packed/mvc/user/user-model.js b/static/scripts/packed/mvc/user/user-model.js index 65b63f5c67d..eda4c9ed941 100644 --- a/static/scripts/packed/mvc/user/user-model.js +++ b/static/scripts/packed/mvc/user/user-model.js @@ -1 +1 @@ -var User=Backbone.Model.extend(LoggableMixin).extend({urlRoot:galaxy_config.root+"api/users",defaults:{id:null,username:"("+_l("anonymous user")+")",email:"",total_disk_usage:0,nice_total_disk_usage:"",quota_percent:null},initialize:function(a){this.log("User.initialize:",a);this.on("loaded",function(b,c){this.log(this+" has loaded:",b,c)});this.on("change",function(b,c){this.log(this+" has changed:",b,c.changes)})},isAnonymous:function(){return(!this.get("email"))},loadFromApi:function(d,b){d=d||User.CURRENT_ID_STR;b=b||{};var a=this,c=b.success;b.success=function(f,e){a.trigger("loaded",f,e);if(c){c(f,e)}};if(d===User.CURRENT_ID_STR){b.url=this.urlRoot+"/"+User.CURRENT_ID_STR}return Backbone.Model.prototype.fetch.call(this,b)},clearSessionStorage:function(){for(var a in sessionStorage){if(a.indexOf("history:")===0){sessionStorage.removeItem(a)}else{if(a==="history-panel"){sessionStorage.removeItem(a)}}}},toString:function(){var a=[this.get("username")];if(this.get("id")){a.unshift(this.get("id"));a.push(this.get("email"))}return"User("+a.join(":")+")"}});User.CURRENT_ID_STR="current";User.getCurrentUserFromApi=function(b){var a=new User();a.loadFromApi(User.CURRENT_ID_STR,b);return a};var UserCollection=Backbone.Collection.extend(LoggableMixin).extend({model:User,urlRoot:galaxy_config.root+"api/users"}); \ No newline at end of file +define(["mvc/base-mvc"],function(a){var c=Backbone.Model.extend(a.LoggableMixin).extend({urlRoot:galaxy_config.root+"api/users",defaults:{id:null,username:"("+_l("anonymous user")+")",email:"",total_disk_usage:0,nice_total_disk_usage:"",quota_percent:null},initialize:function(d){this.log("User.initialize:",d);this.on("loaded",function(e,f){this.log(this+" has loaded:",e,f)});this.on("change",function(e,f){this.log(this+" has changed:",e,f.changes)})},isAnonymous:function(){return(!this.get("email"))},loadFromApi:function(g,e){g=g||c.CURRENT_ID_STR;e=e||{};var d=this,f=e.success;e.success=function(i,h){d.trigger("loaded",i,h);if(f){f(i,h)}};if(g===c.CURRENT_ID_STR){e.url=this.urlRoot+"/"+c.CURRENT_ID_STR}return Backbone.Model.prototype.fetch.call(this,e)},clearSessionStorage:function(){for(var d in sessionStorage){if(d.indexOf("history:")===0){sessionStorage.removeItem(d)}else{if(d==="history-panel"){sessionStorage.removeItem(d)}}}},toString:function(){var d=[this.get("username")];if(this.get("id")){d.unshift(this.get("id"));d.push(this.get("email"))}return"User("+d.join(":")+")"}});c.CURRENT_ID_STR="current";c.getCurrentUserFromApi=function(e){var d=new c();d.loadFromApi(c.CURRENT_ID_STR,e);return d};var b=Backbone.Collection.extend(a.LoggableMixin).extend({model:c,urlRoot:galaxy_config.root+"api/users"});return{User:c}}); \ No newline at end of file diff --git a/static/scripts/packed/mvc/user/user-quotameter.js b/static/scripts/packed/mvc/user/user-quotameter.js index e37ab437ec5..c26f3ca19bf 100644 --- a/static/scripts/packed/mvc/user/user-quotameter.js +++ b/static/scripts/packed/mvc/user/user-quotameter.js @@ -1 +1 @@ -var UserQuotaMeter=Backbone.View.extend(LoggableMixin).extend({options:{warnAtPercent:85,errorAtPercent:100},initialize:function(a){this.log(this+".initialize:",a);_.extend(this.options,a);this.model.bind("change:quota_percent change:total_disk_usage",this.render,this)},update:function(a){this.log(this+" updating user data...",a);this.model.loadFromApi(this.model.get("id"),a);return this},isOverQuota:function(){return(this.model.get("quota_percent")!==null&&this.model.get("quota_percent")>=this.options.errorAtPercent)},_render_quota:function(){var a=this.model.toJSON(),c=a.quota_percent,b=$(this._templateQuotaMeter(a)),d=b.find(".progress-bar");if(this.isOverQuota()){d.attr("class","progress-bar progress-bar-danger");b.find(".quota-meter-text").css("color","white");this.trigger("quota:over",a)}else{if(c>=this.options.warnAtPercent){d.attr("class","progress-bar progress-bar-warning");this.trigger("quota:under quota:under:approaching",a)}else{d.attr("class","progress-bar progress-bar-success");this.trigger("quota:under quota:under:ok",a)}}return b},_render_usage:function(){var a=$(this._templateUsage(this.model.toJSON()));this.log(this+".rendering usage:",a);return a},render:function(){var a=null;this.log(this+".model.quota_percent:",this.model.get("quota_percent"));if((this.model.get("quota_percent")===null)||(this.model.get("quota_percent")===undefined)){a=this._render_usage()}else{a=this._render_quota()}this.$el.html(a);this.$el.find(".quota-meter-text").tooltip();return this},_templateQuotaMeter:function(a){return['
','
','
'):(">")),_l("Using")," ",a.quota_percent,"%","
","
"].join("")},_templateUsage:function(a){return['
','
',((a.nice_total_disk_usage)?(_l("Using ")+a.nice_total_disk_usage):("")),"
","
"].join("")},toString:function(){return"UserQuotaMeter("+this.model+")"}}); \ No newline at end of file +define(["mvc/base-mvc"],function(a){var b=Backbone.View.extend(a.LoggableMixin).extend({options:{warnAtPercent:85,errorAtPercent:100},initialize:function(c){this.log(this+".initialize:",c);_.extend(this.options,c);this.model.bind("change:quota_percent change:total_disk_usage",this.render,this)},update:function(c){this.log(this+" updating user data...",c);this.model.loadFromApi(this.model.get("id"),c);return this},isOverQuota:function(){return(this.model.get("quota_percent")!==null&&this.model.get("quota_percent")>=this.options.errorAtPercent)},_render_quota:function(){var c=this.model.toJSON(),e=c.quota_percent,d=$(this._templateQuotaMeter(c)),f=d.find(".progress-bar");if(this.isOverQuota()){f.attr("class","progress-bar progress-bar-danger");d.find(".quota-meter-text").css("color","white");this.trigger("quota:over",c)}else{if(e>=this.options.warnAtPercent){f.attr("class","progress-bar progress-bar-warning");this.trigger("quota:under quota:under:approaching",c)}else{f.attr("class","progress-bar progress-bar-success");this.trigger("quota:under quota:under:ok",c)}}return d},_render_usage:function(){var c=$(this._templateUsage(this.model.toJSON()));this.log(this+".rendering usage:",c);return c},render:function(){var c=null;this.log(this+".model.quota_percent:",this.model.get("quota_percent"));if((this.model.get("quota_percent")===null)||(this.model.get("quota_percent")===undefined)){c=this._render_usage()}else{c=this._render_quota()}this.$el.html(c);this.$el.find(".quota-meter-text").tooltip();return this},_templateQuotaMeter:function(c){return['
','
','
'):(">")),_l("Using")," ",c.quota_percent,"%","
","
"].join("")},_templateUsage:function(c){return['
','
',((c.nice_total_disk_usage)?(_l("Using ")+c.nice_total_disk_usage):("")),"
","
"].join("")},toString:function(){return"UserQuotaMeter("+this.model+")"}});return{UserQuotaMeter:b}}); \ No newline at end of file diff --git a/static/scripts/packed/mvc/visualization/visualization-model.js b/static/scripts/packed/mvc/visualization/visualization-model.js index c034e82aaa2..698d2538e33 100644 --- a/static/scripts/packed/mvc/visualization/visualization-model.js +++ b/static/scripts/packed/mvc/visualization/visualization-model.js @@ -1 +1 @@ -var Visualization=Backbone.Model.extend(LoggableMixin).extend({defaults:{config:{}},urlRoot:function(){var a="/api/visualizations";return((window.galaxy_config&&galaxy_config.root)?(galaxy_config.root+a):(a))},initialize:function(a){this.log(this+".initialize",a,this.attributes);if(_.isObject(a.config)&&_.isObject(this.defaults.config)){_.defaults(a.config,this.defaults.config)}this._setUpListeners()},_setUpListeners:function(){},set:function(b,c){if(b==="config"){var a=this.get("config");if(_.isObject(a)){c=_.extend(_.clone(a),c)}}Backbone.Model.prototype.set.call(this,b,c);return this},toString:function(){var a=this.get("id")||"";if(this.get("title")){a+=":"+this.get("title")}return"Visualization("+a+")"}});var VisualizationCollection=Backbone.Collection.extend(LoggableMixin).extend({model:Visualization,url:function(){return galaxy_config.root+"api/visualizations"},initialize:function(b,a){a=a||{}},set:function(c,a){var b=this;c=_.map(c,function(e){var f=b.get(e.id);if(!f){return e}var d=f.toJSON();_.extend(d,e);return d});Backbone.Collection.prototype.set.call(this,c,a)},toString:function(){return(["VisualizationCollection(",[this.historyId,this.length].join(),")"].join(""))}}); \ No newline at end of file +var Visualization=Backbone.Model.extend({defaults:{config:{}},urlRoot:function(){var a="/api/visualizations";return((window.galaxy_config&&galaxy_config.root)?(galaxy_config.root+a):(a))},initialize:function(a){if(_.isObject(a.config)&&_.isObject(this.defaults.config)){_.defaults(a.config,this.defaults.config)}this._setUpListeners()},_setUpListeners:function(){},set:function(b,c){if(b==="config"){var a=this.get("config");if(_.isObject(a)){c=_.extend(_.clone(a),c)}}Backbone.Model.prototype.set.call(this,b,c);return this},toString:function(){var a=this.get("id")||"";if(this.get("title")){a+=":"+this.get("title")}return"Visualization("+a+")"}});var VisualizationCollection=Backbone.Collection.extend({model:Visualization,url:function(){return galaxy_config.root+"api/visualizations"},initialize:function(b,a){a=a||{}},set:function(c,a){var b=this;c=_.map(c,function(e){var f=b.get(e.id);if(!f){return e}var d=f.toJSON();_.extend(d,e);return d});Backbone.Collection.prototype.set.call(this,c,a)},toString:function(){return(["VisualizationCollection(",[this.historyId,this.length].join(),")"].join(""))}}); \ No newline at end of file diff --git a/templates/webapps/galaxy/galaxy.masthead.mako b/templates/webapps/galaxy/galaxy.masthead.mako index bff5df669cb..8f73e1c9f39 100644 --- a/templates/webapps/galaxy/galaxy.masthead.mako +++ b/templates/webapps/galaxy/galaxy.masthead.mako @@ -66,25 +66,28 @@ } %> - ${h.js( "mvc/base-mvc", "utils/localization", "mvc/user/user-model", "mvc/user/user-quotameter" )} + ##${h.js( "mvc/base-mvc", "utils/localization", "mvc/user/user-model", "mvc/user/user-quotameter" )} + ${h.js( "utils/localization" )} ## load the frame manager %endif - ## ---------------------------------------------------------------------------- @@ -163,8 +157,12 @@ ${history_panel_javascripts()} require.config({ baseUrl : "${h.url_for( '/static/scripts' )}" - })([ panelToUse.location ], function( panelMod ){ + })([ 'mvc/user/user-model', panelToUse.location ], function( user, panelMod ){ $(function(){ + if( !Galaxy.currUser ){ + Galaxy.currUser = new user.User( ${h.to_json_string( get_user_json() )} ); + } + var panelClass = panelMod[ panelToUse.className ], // history module is already in the dpn chain from the panel. We can re-scope it here. historyModel = require( 'mvc/history/history-model' ), diff --git a/templates/webapps/galaxy/root/history.mako b/templates/webapps/galaxy/root/history.mako index 71d6a995803..8279320d7fc 100644 --- a/templates/webapps/galaxy/root/history.mako +++ b/templates/webapps/galaxy/root/history.mako @@ -22,47 +22,45 @@ <%def name="javascripts()"> ${parent.javascripts()} ${history_panel_javascripts()} -${h.js( - "mvc/user/user-model" -)} + Galaxy.currUser = new user.User( ${h.to_json_string( get_user_json() )} ); + // history module is already in the dpn chain from the panel. We can re-scope it here. + var historyModel = require( 'mvc/history/history-model' ), + debugging = JSON.parse( sessionStorage.getItem( 'debugging' ) ) || false, + historyJSON = ${h.to_json_string( history )}, + hdaJSON = ${h.to_json_string( hdas )}; -