From b595cd3f4775c1435a28ee80159fe16a2b4581b6 Mon Sep 17 00:00:00 2001 From: guerler Date: Tue, 4 Oct 2016 22:36:16 -0400 Subject: [PATCH] Always submit either history_id or new history name through run form --- .../scripts/mvc/tool/tool-form-composite.js | 53 +++++++++---------- lib/galaxy/managers/workflows.py | 1 + .../maps/mvc/tool/tool-form-composite.js.map | 2 +- .../scripts/mvc/tool/tool-form-composite.js | 2 +- 4 files changed, 29 insertions(+), 29 deletions(-) diff --git a/client/galaxy/scripts/mvc/tool/tool-form-composite.js b/client/galaxy/scripts/mvc/tool/tool-form-composite.js index 069a090757b..dab85588bb8 100644 --- a/client/galaxy/scripts/mvc/tool/tool-form-composite.js +++ b/client/galaxy/scripts/mvc/tool/tool-form-composite.js @@ -224,34 +224,31 @@ define([ 'utils/utils', 'utils/deferred', 'mvc/ui/ui-misc', 'mvc/form/form-view' /** Render workflow parameters */ _renderHistory: function() { - this.history_form = null; - if ( !this.model.get( 'history_id' ) ) { - this.history_form = new Form({ - cls : 'ui-portlet-narrow', - title : 'History Options', - inputs : [{ - type : 'conditional', - name : 'new_history', - test_param : { - name : 'check', - label : 'Send results to a new history', - type : 'boolean', - value : 'false', - help : '' - }, - cases : [{ - value : 'true', - inputs : [{ - name : 'name', - label : 'History name', - type : 'text', - value : this.model.get( 'name' ) - }] + this.history_form = new Form({ + cls : 'ui-portlet-narrow', + title : 'History Options', + inputs : [{ + type : 'conditional', + name : 'new_history', + test_param : { + name : 'check', + label : 'Send results to a new history', + type : 'boolean', + value : 'false', + help : '' + }, + cases : [{ + value : 'true', + inputs : [{ + name : 'name', + label : 'History name', + type : 'text', + value : this.model.get( 'name' ) }] }] - }); - this._append( this.$steps, this.history_form.$el ); - } + }] + }); + this._append( this.$steps, this.history_form.$el ); }, /** Render step */ @@ -355,8 +352,10 @@ define([ 'utils/utils', 'utils/deferred', 'mvc/ui/ui-misc', 'mvc/form/form-view' /** Validate and submit workflow */ _submit: function() { var self = this; + var history_form_data = this.history_form.data.create(); var job_def = { - new_history_name : this.history_form ? this.history_form.data.create()[ 'new_history|name' ] : {}, + new_history_name : history_form_data[ 'new_history|name' ] ? history_form_data[ 'new_history|name' ] : null, + history_id : !history_form_data[ 'new_history|name' ] ? this.model.get( 'history_id' ) : null, replacement_params : this.wp_form ? this.wp_form.data.create() : {}, parameters : {}, // Tool form will submit flat maps for each parameter diff --git a/lib/galaxy/managers/workflows.py b/lib/galaxy/managers/workflows.py index 9880f9e180b..abe490898ec 100644 --- a/lib/galaxy/managers/workflows.py +++ b/lib/galaxy/managers/workflows.py @@ -406,6 +406,7 @@ class WorkflowContentsManager(UsesAnnotations): step_models.append( step_model ) return { 'id' : trans.app.security.encode_id( stored.id ), + 'history_id' : trans.app.security.encode_id( trans.history.id ) if trans.history else None, 'name' : stored.name, 'steps' : step_models, 'step_version_changes' : step_version_changes, diff --git a/static/maps/mvc/tool/tool-form-composite.js.map b/static/maps/mvc/tool/tool-form-composite.js.map index f88051aeb34..93cec1d7465 100644 --- a/static/maps/mvc/tool/tool-form-composite.js.map +++ b/static/maps/mvc/tool/tool-form-composite.js.map @@ -1 +1 @@ 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"))),$("body").append(this.$el),this._configure(),this.render(),this._refresh(),this.$el.on("click",function(){c._refresh()}),this.$steps.scroll(function(){c._refresh()}),$(window).resize(function(){c._refresh()})},_refresh:function(){var a=_.reduce(this.$el.children(),function(a,b){return a+$(b).outerHeight()},0)-this.$steps.height()+25;this.$steps.css("height",$(window).height()-a)},_configure:function(){function b(a,b){var e=c._isWorkflowParameter(a);e&&b(c.wp_inputs[e]=c.wp_inputs[e]||{label:e,name:e,type:"text",color:"hsl( "+100*++d+", 70%, 30% )",style:"ui-form-wp-source",links:[]})}var c=this;this.forms=[],this.steps=[],this.links=[],this.parms=[],_.each(this.model.get("steps"),function(b,d){Galaxy.emit.debug("tool-form-composite::initialize()",d+" : Preparing workflow step."),b=a.merge({index:d,name:"Step "+(parseInt(d)+1)+": "+b.name,icon:"",help:null,description:b.annotation&&" - "+b.annotation||b.description,citations:null,collapsible:!0,collapsed:d>0&&!c._isDataStep(b),sustain_version:!0,sustain_repeats:!0,sustain_conditionals:!0,narrow:!0,text_enable:"Edit",text_disable:"Undo",cls_enable:"fa fa-edit",cls_disable:"fa fa-undo",errors:b.messages,initial_errors:!0,cls:"ui-portlet-narrow",hide_operations:!0,needs_refresh:!1,always_refresh:"tool"!=b.step_type},b),c.steps[d]=b,c.links[d]=[],c.parms[d]={}}),_.each(this.steps,function(a,b){e.visitInputs(a.inputs,function(a,d){c.parms[b][d]=a})}),_.each(this.steps,function(a,b){_.each(a.output_connections,function(a){_.each(c.steps,function(d){d.step_index===a.input_step_index&&c.links[b].push(d)})})}),_.each(this.steps,function(a,b){_.each(c.steps,function(d,e){var f={};_.each(a.output_connections,function(a){d.step_index===a.input_step_index&&(f[a.input_name]=a)}),_.each(c.parms[e],function(c,d){var e=f[d];e&&(c.type="hidden",c.help=c.step_linked?c.help+", ":"",c.help+="Output dataset '"+e.output_name+"' from step "+(parseInt(b)+1),c.step_linked=c.step_linked||[],c.step_linked.push(a))})})});var d=0;this.wp_inputs={},_.each(this.steps,function(a,d){_.each(c.parms[d],function(c){b(c.value,function(b){b.links.push(a),c.wp_linked=b.name,c.color=b.color,c.type="text",c.value=null,c.backdrop=!0,c.style="ui-form-wp-target"})}),_.each(a.post_job_actions,function(a){_.each(a.action_arguments,function(a){b(a,function(){})})})}),_.each(this.steps,function(b){if("tool"==b.step_type){var d=!0;e.visitInputs(b.inputs,function(e,f,g){var h=-1!=["data","data_collection"].indexOf(e.type),i=g[e.data_ref];e.step_linked&&!c._isDataStep(e.step_linked)&&(d=!1),e.options&&(0==e.options.length&&!d||e.wp_linked)&&(e.is_workflow=!0),i&&(e.is_workflow=i.step_linked&&!c._isDataStep(i.step_linked)||e.wp_linked),(h||e.value&&"RuntimeValue"==e.value.__class__&&!e.step_linked)&&(b.collapsed=!1),e.value&&"RuntimeValue"==e.value.__class__&&(e.value=null),e.flavor="workflow",h||"hidden"===e.type||e.wp_linked||(e.optional||!a.isEmpty(e.value)&&""!==e.value)&&(e.collapsible_value=e.value,e.collapsible_preview=!0)})}})},render:function(){var a=this;this.deferred.reset(),this._renderHeader(),this._renderMessage(),this._renderParameters(),this._renderHistory(),_.each(this.steps,function(b){a._renderStep(b)})},_renderHeader:function(){var a=this;this.execute_btn=new c.Button({icon:"fa-check",title:"Run workflow",cls:"btn btn-primary",onclick:function(){a._execute()}}),this.$header.addClass("ui-form-header").empty().append(new c.Label({title:"Workflow: "+this.model.get("name")}).$el).append(this.execute_btn.$el)},_renderMessage:function(){this.$message.empty(),this.model.get("has_upgrade_messages")&&this.$message.append(new c.Message({message:"Some tools in this workflow may have changed since it was last saved or some errors were found. The workflow may still run, but any new options will have default values. Please review the messages below to make a decision about whether the changes will affect your analysis.",status:"warning",persistent:!0,fade:!1}).$el);var a=this.model.get("step_version_changes");a&&a.length>0&&this.$message.append(new c.Message({message:"Some tools are being executed with different versions compared to those available when this workflow was last saved because the other versions are not or no longer available on this Galaxy instance. To upgrade your workflow and dismiss this message simply edit the workflow and re-save it.",status:"warning",persistent:!0,fade:!1}).$el)},_renderParameters:function(){var a=this;this.wp_form=null,_.isEmpty(this.wp_inputs)||(this.wp_form=new d({title:"Workflow Parameters",inputs:this.wp_inputs,cls:"ui-portlet-narrow",onchange:function(){_.each(a.wp_form.input_list,function(b){_.each(b.links,function(b){a._refreshStep(b)})})}}),this._append(this.$steps.empty(),this.wp_form.$el))},_renderHistory:function(){this.history_form=null,this.model.get("history_id")||(this.history_form=new d({cls:"ui-portlet-narrow",title:"History Options",inputs:[{type:"conditional",name:"new_history",test_param:{name:"check",label:"Send results to a new history",type:"boolean",value:"false",help:""},cases:[{value:"true",inputs:[{name:"name",label:"History name",type:"text",value:this.model.get("name")}]}]}]}),this._append(this.$steps,this.history_form.$el))},_renderStep:function(b){var c=this,e=null;this.deferred.execute(function(g){c.$steps.addClass("ui-steps"),"tool"==b.step_type?(e=new f(b),b.post_job_actions&&b.post_job_actions.length&&e.portlet.append($("
").addClass("ui-form-element-disabled").append($("
").addClass("ui-form-title").html("Job Post Actions")).append($("
").addClass("ui-form-preview").html(_.reduce(b.post_job_actions,function(a,b){return a+" "+b.short_str},""))))):(_.each(b.inputs,function(a){a.flavor="module"}),e=new d(a.merge({title:""+b.name+"",onchange:function(){_.each(c.links[b.index],function(a){c._refreshStep(a)})},inputs:b.inputs&&b.inputs.length>0?b.inputs:[{type:"hidden",name:"No options available.",ignore:null}]},b))),c.forms[b.index]=e,c._append(c.$steps,e.$el),b.needs_refresh&&c._refreshStep(b),e.portlet[c.show_progress?"disable":"enable"](),c.show_progress&&c.execute_btn.model.set({wait:!0,wait_text:"Preparing...",percentage:100*(b.index+1)/c.steps.length}),Galaxy.emit.debug("tool-form-composite::initialize()",b.index+" : Workflow step state ready.",b),setTimeout(function(){g.resolve()},0)})},_refreshStep:function(a){var b=this,c=this.forms[a.index];c?(_.each(b.parms[a.index],function(a,d){if(a.step_linked||a.wp_linked){var e=c.field_list[c.data.match(d)];if(e){var f=void 0;if(a.step_linked)f={values:[]},_.each(a.step_linked,function(a){b._isDataStep(a)&&(value=b.forms[a.index].data.create().input,value&&_.each(value.values,function(a){f.values.push(a)}))}),!a.multiple&&f.values.length>0&&(f={values:[f.values[0]]});else if(a.wp_linked){var g=b.wp_form.field_list[b.wp_form.data.match(a.wp_linked)];g&&(f=g.value())}void 0!==f&&e.value(f)}}}),c.trigger("change")):a.needs_refresh=!0},_refreshHistory:function(){var a=this,b=parent.Galaxy&&parent.Galaxy.currHistoryPanel&&parent.Galaxy.currHistoryPanel.model;this._refresh_history&&clearTimeout(this._refresh_history),b&&b.refresh().success(function(){0===b.numOfUnfinishedShownContents()&&(a._refresh_history=setTimeout(function(){a._refreshHistory()},b.UPDATE_DELAY))})},_execute:function(){var a=this;this.show_progress=!0,this._enabled(!1),this.deferred.execute(function(b){setTimeout(function(){b.resolve(),a._submit()},0)})},_submit:function(){var b=this,c={new_history_name:this.history_form?this.history_form.data.create()["new_history|name"]:{},replacement_params:this.wp_form?this.wp_form.data.create():{},parameters:{},parameters_normalized:!0,batch:!0},d=!0;for(var e in this.forms){var f=this.forms[e],g=f.data.create(),h=b.steps[e],i=h.step_index;f.trigger("reset");for(var j in g){var k=g[j],l=f.data.match(j),m=(f.field_list[l],f.input_list[l]);if(!m.step_linked){if(d=this._isDataStep(h)?k&&k.values&&k.values.length>0:m.optional||m.is_workflow&&""!==k||!m.is_workflow&&null!==k,!d){f.highlight(l);break}c.parameters[i]=c.parameters[i]||{},c.parameters[i][j]=g[j]}}if(!d)break}d?(Galaxy.emit.debug("tool-form-composite::submit()","Validation complete.",c),a.request({type:"POST",url:Galaxy.root+"api/workflows/"+this.model.id+"/invocations",data:c,success:function(a){Galaxy.emit.debug("tool-form-composite::submit","Submission successful.",a),b.$el.children().hide(),b.$el.append(b._templateSuccess(a)),b._refreshHistory()},error:function(a){Galaxy.emit.debug("tool-form-composite::submit","Submission failed.",a);var d=!1;if(a&&a.err_data)for(var e in b.forms){var f=b.forms[e],g=a.err_data[f.options.step_index];if(g){var h=f.data.matchResponse(g);for(var i in h){f.highlight(i,h[i]),d=!0;break}}}d||b.modal.show({title:"Workflow submission failed",body:b._templateError(c,a&&a.err_msg),buttons:{Close:function(){b.modal.hide()}}})},complete:function(){b._enabled(!0)}})):(b._enabled(!0),Galaxy.emit.debug("tool-form-composite::submit()","Validation failed.",c))},_append:function(a,b){a.append("

").append(b)},_enabled:function(a){this.execute_btn.model.set({wait:!a,wait_text:"Sending...",percentage:-1}),this.wp_form&&this.wp_form.portlet[a?"enable":"disable"](),this.history_form&&this.history_form.portlet[a?"enable":"disable"](),_.each(this.forms,function(b){b&&b.portlet[a?"enable":"disable"]()})},_isWorkflowParameter:function(b){return"$"===String(b).substring(0,1)?a.sanitize(b.substring(2,b.length-1)):void 0},_isDataStep:function(a){lst=$.isArray(a)?a:[a];for(var b=0;b0?$("

").addClass("donemessagelarge").append($("

").html("Successfully invoked workflow "+a.sanitize(this.model.get("name"))+""+(b.length>1?" "+b.length+" times":"")+".")).append($("

").append("").text("You can check the status of queued jobs and view the resulting data by refreshing the History pane. When the job has been run the status will change from 'running' to 'finished' if completed successfully or 'error' if problems were encountered.")):this._templateError(b,"Invalid success response. No invocations found.")},_templateError:function(a,b){return $("

").addClass("errormessagelarge").append($("

").text("The server could not complete the request. Please contact the Galaxy Team if this error persists. "+(JSON.stringify(b)||""))).append($("

").text(JSON.stringify(a,null,4)))}});return{View:h}});
+define(["utils/utils","utils/deferred","mvc/ui/ui-misc","mvc/form/form-view","mvc/form/form-data","mvc/tool/tool-form-base","mvc/ui/ui-modal"],function(a,b,c,d,e,f,g){var h=Backbone.View.extend({initialize:function(a){var c=this;this.modal=parent.Galaxy.modal||new g.View,this.model=a&&a.model||new Backbone.Model(a),this.deferred=new b,this.setElement($("
").addClass("ui-form-composite").append(this.$message=$("
")).append(this.$header=$("
")).append(this.$steps=$("
"))),$("body").append(this.$el),this._configure(),this.render(),this._refresh(),this.$el.on("click",function(){c._refresh()}),this.$steps.scroll(function(){c._refresh()}),$(window).resize(function(){c._refresh()})},_refresh:function(){var a=_.reduce(this.$el.children(),function(a,b){return a+$(b).outerHeight()},0)-this.$steps.height()+25;this.$steps.css("height",$(window).height()-a)},_configure:function(){function b(a,b){var e=c._isWorkflowParameter(a);e&&b(c.wp_inputs[e]=c.wp_inputs[e]||{label:e,name:e,type:"text",color:"hsl( "+100*++d+", 70%, 30% )",style:"ui-form-wp-source",links:[]})}var c=this;this.forms=[],this.steps=[],this.links=[],this.parms=[],_.each(this.model.get("steps"),function(b,d){Galaxy.emit.debug("tool-form-composite::initialize()",d+" : Preparing workflow step."),b=a.merge({index:d,name:"Step "+(parseInt(d)+1)+": "+b.name,icon:"",help:null,description:b.annotation&&" - "+b.annotation||b.description,citations:null,collapsible:!0,collapsed:d>0&&!c._isDataStep(b),sustain_version:!0,sustain_repeats:!0,sustain_conditionals:!0,narrow:!0,text_enable:"Edit",text_disable:"Undo",cls_enable:"fa fa-edit",cls_disable:"fa fa-undo",errors:b.messages,initial_errors:!0,cls:"ui-portlet-narrow",hide_operations:!0,needs_refresh:!1,always_refresh:"tool"!=b.step_type},b),c.steps[d]=b,c.links[d]=[],c.parms[d]={}}),_.each(this.steps,function(a,b){e.visitInputs(a.inputs,function(a,d){c.parms[b][d]=a})}),_.each(this.steps,function(a,b){_.each(a.output_connections,function(a){_.each(c.steps,function(d){d.step_index===a.input_step_index&&c.links[b].push(d)})})}),_.each(this.steps,function(a,b){_.each(c.steps,function(d,e){var f={};_.each(a.output_connections,function(a){d.step_index===a.input_step_index&&(f[a.input_name]=a)}),_.each(c.parms[e],function(c,d){var e=f[d];e&&(c.type="hidden",c.help=c.step_linked?c.help+", ":"",c.help+="Output dataset '"+e.output_name+"' from step "+(parseInt(b)+1),c.step_linked=c.step_linked||[],c.step_linked.push(a))})})});var d=0;this.wp_inputs={},_.each(this.steps,function(a,d){_.each(c.parms[d],function(c){b(c.value,function(b){b.links.push(a),c.wp_linked=b.name,c.color=b.color,c.type="text",c.value=null,c.backdrop=!0,c.style="ui-form-wp-target"})}),_.each(a.post_job_actions,function(a){_.each(a.action_arguments,function(a){b(a,function(){})})})}),_.each(this.steps,function(b){if("tool"==b.step_type){var d=!0;e.visitInputs(b.inputs,function(e,f,g){var h=-1!=["data","data_collection"].indexOf(e.type),i=g[e.data_ref];e.step_linked&&!c._isDataStep(e.step_linked)&&(d=!1),e.options&&(0==e.options.length&&!d||e.wp_linked)&&(e.is_workflow=!0),i&&(e.is_workflow=i.step_linked&&!c._isDataStep(i.step_linked)||e.wp_linked),(h||e.value&&"RuntimeValue"==e.value.__class__&&!e.step_linked)&&(b.collapsed=!1),e.value&&"RuntimeValue"==e.value.__class__&&(e.value=null),e.flavor="workflow",h||"hidden"===e.type||e.wp_linked||(e.optional||!a.isEmpty(e.value)&&""!==e.value)&&(e.collapsible_value=e.value,e.collapsible_preview=!0)})}})},render:function(){var a=this;this.deferred.reset(),this._renderHeader(),this._renderMessage(),this._renderParameters(),this._renderHistory(),_.each(this.steps,function(b){a._renderStep(b)})},_renderHeader:function(){var a=this;this.execute_btn=new c.Button({icon:"fa-check",title:"Run workflow",cls:"btn btn-primary",onclick:function(){a._execute()}}),this.$header.addClass("ui-form-header").empty().append(new c.Label({title:"Workflow: "+this.model.get("name")}).$el).append(this.execute_btn.$el)},_renderMessage:function(){this.$message.empty(),this.model.get("has_upgrade_messages")&&this.$message.append(new c.Message({message:"Some tools in this workflow may have changed since it was last saved or some errors were found. The workflow may still run, but any new options will have default values. Please review the messages below to make a decision about whether the changes will affect your analysis.",status:"warning",persistent:!0,fade:!1}).$el);var a=this.model.get("step_version_changes");a&&a.length>0&&this.$message.append(new c.Message({message:"Some tools are being executed with different versions compared to those available when this workflow was last saved because the other versions are not or no longer available on this Galaxy instance. To upgrade your workflow and dismiss this message simply edit the workflow and re-save it.",status:"warning",persistent:!0,fade:!1}).$el)},_renderParameters:function(){var a=this;this.wp_form=null,_.isEmpty(this.wp_inputs)||(this.wp_form=new d({title:"Workflow Parameters",inputs:this.wp_inputs,cls:"ui-portlet-narrow",onchange:function(){_.each(a.wp_form.input_list,function(b){_.each(b.links,function(b){a._refreshStep(b)})})}}),this._append(this.$steps.empty(),this.wp_form.$el))},_renderHistory:function(){this.history_form=new d({cls:"ui-portlet-narrow",title:"History Options",inputs:[{type:"conditional",name:"new_history",test_param:{name:"check",label:"Send results to a new history",type:"boolean",value:"false",help:""},cases:[{value:"true",inputs:[{name:"name",label:"History name",type:"text",value:this.model.get("name")}]}]}]}),this._append(this.$steps,this.history_form.$el)},_renderStep:function(b){var c=this,e=null;this.deferred.execute(function(g){c.$steps.addClass("ui-steps"),"tool"==b.step_type?(e=new f(b),b.post_job_actions&&b.post_job_actions.length&&e.portlet.append($("
").addClass("ui-form-element-disabled").append($("
").addClass("ui-form-title").html("Job Post Actions")).append($("
").addClass("ui-form-preview").html(_.reduce(b.post_job_actions,function(a,b){return a+" "+b.short_str},""))))):(_.each(b.inputs,function(a){a.flavor="module"}),e=new d(a.merge({title:""+b.name+"",onchange:function(){_.each(c.links[b.index],function(a){c._refreshStep(a)})},inputs:b.inputs&&b.inputs.length>0?b.inputs:[{type:"hidden",name:"No options available.",ignore:null}]},b))),c.forms[b.index]=e,c._append(c.$steps,e.$el),b.needs_refresh&&c._refreshStep(b),e.portlet[c.show_progress?"disable":"enable"](),c.show_progress&&c.execute_btn.model.set({wait:!0,wait_text:"Preparing...",percentage:100*(b.index+1)/c.steps.length}),Galaxy.emit.debug("tool-form-composite::initialize()",b.index+" : Workflow step state ready.",b),setTimeout(function(){g.resolve()},0)})},_refreshStep:function(a){var b=this,c=this.forms[a.index];c?(_.each(b.parms[a.index],function(a,d){if(a.step_linked||a.wp_linked){var e=c.field_list[c.data.match(d)];if(e){var f=void 0;if(a.step_linked)f={values:[]},_.each(a.step_linked,function(a){b._isDataStep(a)&&(value=b.forms[a.index].data.create().input,value&&_.each(value.values,function(a){f.values.push(a)}))}),!a.multiple&&f.values.length>0&&(f={values:[f.values[0]]});else if(a.wp_linked){var g=b.wp_form.field_list[b.wp_form.data.match(a.wp_linked)];g&&(f=g.value())}void 0!==f&&e.value(f)}}}),c.trigger("change")):a.needs_refresh=!0},_refreshHistory:function(){var a=this,b=parent.Galaxy&&parent.Galaxy.currHistoryPanel&&parent.Galaxy.currHistoryPanel.model;this._refresh_history&&clearTimeout(this._refresh_history),b&&b.refresh().success(function(){0===b.numOfUnfinishedShownContents()&&(a._refresh_history=setTimeout(function(){a._refreshHistory()},b.UPDATE_DELAY))})},_execute:function(){var a=this;this.show_progress=!0,this._enabled(!1),this.deferred.execute(function(b){setTimeout(function(){b.resolve(),a._submit()},0)})},_submit:function(){var b=this,c=this.history_form.data.create(),d={new_history_name:c["new_history|name"]?c["new_history|name"]:null,history_id:c["new_history|name"]?null:this.model.get("history_id"),replacement_params:this.wp_form?this.wp_form.data.create():{},parameters:{},parameters_normalized:!0,batch:!0},e=!0;for(var f in this.forms){var g=this.forms[f],h=g.data.create(),i=b.steps[f],j=i.step_index;g.trigger("reset");for(var k in h){var l=h[k],m=g.data.match(k),n=(g.field_list[m],g.input_list[m]);if(!n.step_linked){if(e=this._isDataStep(i)?l&&l.values&&l.values.length>0:n.optional||n.is_workflow&&""!==l||!n.is_workflow&&null!==l,!e){g.highlight(m);break}d.parameters[j]=d.parameters[j]||{},d.parameters[j][k]=h[k]}}if(!e)break}e?(Galaxy.emit.debug("tool-form-composite::submit()","Validation complete.",d),a.request({type:"POST",url:Galaxy.root+"api/workflows/"+this.model.id+"/invocations",data:d,success:function(a){Galaxy.emit.debug("tool-form-composite::submit","Submission successful.",a),b.$el.children().hide(),b.$el.append(b._templateSuccess(a)),b._refreshHistory()},error:function(a){Galaxy.emit.debug("tool-form-composite::submit","Submission failed.",a);var c=!1;if(a&&a.err_data)for(var e in b.forms){var f=b.forms[e],g=a.err_data[f.options.step_index];if(g){var h=f.data.matchResponse(g);for(var i in h){f.highlight(i,h[i]),c=!0;break}}}c||b.modal.show({title:"Workflow submission failed",body:b._templateError(d,a&&a.err_msg),buttons:{Close:function(){b.modal.hide()}}})},complete:function(){b._enabled(!0)}})):(b._enabled(!0),Galaxy.emit.debug("tool-form-composite::submit()","Validation failed.",d))},_append:function(a,b){a.append("
").append(b)},_enabled:function(a){this.execute_btn.model.set({wait:!a,wait_text:"Sending...",percentage:-1}),this.wp_form&&this.wp_form.portlet[a?"enable":"disable"](),this.history_form&&this.history_form.portlet[a?"enable":"disable"](),_.each(this.forms,function(b){b&&b.portlet[a?"enable":"disable"]()})},_isWorkflowParameter:function(b){return"$"===String(b).substring(0,1)?a.sanitize(b.substring(2,b.length-1)):void 0},_isDataStep:function(a){lst=$.isArray(a)?a:[a];for(var b=0;b0?$("
").addClass("donemessagelarge").append($("
").html("Successfully invoked workflow "+a.sanitize(this.model.get("name"))+""+(b.length>1?" "+b.length+" times":"")+".")).append($("
").append("").text("You can check the status of queued jobs and view the resulting data by refreshing the History pane. When the job has been run the status will change from 'running' to 'finished' if completed successfully or 'error' if problems were encountered.")):this._templateError(b,"Invalid success response. No invocations found.")},_templateError:function(a,b){return $("
").addClass("errormessagelarge").append($("
").text("The server could not complete the request. Please contact the Galaxy Team if this error persists. "+(JSON.stringify(b)||""))).append($("
").text(JSON.stringify(a,null,4)))}});return{View:h}});
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