diff --git a/client/galaxy/scripts/mvc/dataset/dataset-li.js b/client/galaxy/scripts/mvc/dataset/dataset-li.js
index c8c80aaf774..db2cac24909 100644
--- a/client/galaxy/scripts/mvc/dataset/dataset-li.js
+++ b/client/galaxy/scripts/mvc/dataset/dataset-li.js
@@ -37,8 +37,6 @@ var DatasetListItemView = _super.extend(
/** where should pages from links be displayed? (default to new tab/window) */
this.linkTarget = attributes.linkTarget || '_blank';
-
- this._setUpListeners();
},
/** event listeners */
@@ -60,13 +58,22 @@ var DatasetListItemView = _super.extend(
},
// ......................................................................... expandable
- /** In this override, only get details if in the ready state.
+ /** In this override, only get details if in the ready state, get rerunnable if in other states.
* Note: fetch with no 'change' event triggering to prevent automatic rendering.
*/
_fetchModelDetails : function(){
var view = this;
if( view.model.inReadyState() && !view.model.hasDetails() ){
return view.model.fetch({ silent: true });
+
+ // special case the need for the rerunnable attribute
+ // needed for rendering re-run button on queued, running datasets
+ } else if( !view.model.has( 'rerunnable' ) ){
+ return view.model.fetch({ silent: true, data: {
+ view: 'summary',
+ // only fetch rerunnable to keep overhead down
+ keys: 'rerunnable'
+ }});
}
return jQuery.when();
},
diff --git a/client/galaxy/scripts/mvc/tools/tools-jobs.js b/client/galaxy/scripts/mvc/tools/tools-jobs.js
index 34535665f4b..24e4bab3d76 100644
--- a/client/galaxy/scripts/mvc/tools/tools-jobs.js
+++ b/client/galaxy/scripts/mvc/tools/tools-jobs.js
@@ -35,12 +35,8 @@ return {
success : function(response) {
callback && callback();
form.reciept(ToolTemplate.success(response));
- // Get hda ids from response, request detailed refresh of these.
- var detailIds = [];
- response.outputs.forEach(function(e, i, a){
- detailIds.push(e.id);
- });
- self._refreshHdas(detailIds);
+ // begin checking the history for updates
+ self._refreshHdas();
},
error : function(response, response_full) {
callback && callback();
@@ -140,9 +136,9 @@ return {
/** Refreshes the history panel
*/
- _refreshHdas: function(detailIds) {
+ _refreshHdas: function(detailIds, options) {
if (parent.Galaxy && parent.Galaxy.currHistoryPanel) {
- parent.Galaxy.currHistoryPanel.refreshContents(detailIds);
+ parent.Galaxy.currHistoryPanel.refreshContents(detailIds, options);
}
}
};
diff --git a/static/maps/mvc/dataset/dataset-li.js.map b/static/maps/mvc/dataset/dataset-li.js.map
index 9b8020949ca..8716eaae0b1 100644
--- a/static/maps/mvc/dataset/dataset-li.js.map
+++ b/static/maps/mvc/dataset/dataset-li.js.map
@@ -1 +1 @@
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\ No newline at end of file
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diff --git a/static/maps/mvc/tools/tools-jobs.js.map b/static/maps/mvc/tools/tools-jobs.js.map
index 2b420d90a0c..8535c8cb4d2 100644
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diff --git a/static/scripts/mvc/dataset/dataset-li.js b/static/scripts/mvc/dataset/dataset-li.js
index 65584155f28..92350be7554 100644
--- a/static/scripts/mvc/dataset/dataset-li.js
+++ b/static/scripts/mvc/dataset/dataset-li.js
@@ -1,2 +1,2 @@
-define(["mvc/list/list-item","mvc/dataset/states","ui/fa-icon-button","mvc/base-mvc","utils/localization"],function(a,b,c,d,e){var f=a.ListItemView,g=f.extend({className:f.prototype.className+" dataset",id:function(){return["dataset",this.model.get("id")].join("-")},initialize:function(a){a.logger&&(this.logger=this.model.logger=a.logger),this.log(this+".initialize:",a),f.prototype.initialize.call(this,a),this.linkTarget=a.linkTarget||"_blank",this._setUpListeners()},_setUpListeners:function(){f.prototype._setUpListeners.call(this),this.model.on("change",function(){this.model.changedAttributes().state&&this.model.inReadyState()&&this.expanded&&!this.model.hasDetails()?this.model.fetch():this.render()},this)},_fetchModelDetails:function(){var a=this;return a.model.inReadyState()&&!a.model.hasDetails()?a.model.fetch({silent:!0}):jQuery.when()},remove:function(a,b){var c=this;a=a||this.fxSpeed,this.$el.fadeOut(a,function(){Backbone.View.prototype.remove.call(c),b&&b.call(c)})},render:function(a){return f.prototype.render.call(this,a)},_swapNewRender:function(a){return f.prototype._swapNewRender.call(this,a),this.model.has("state")&&this.$el.addClass("state-"+this.model.get("state")),this.$el},_renderPrimaryActions:function(){return[this._renderDisplayButton()]},_renderDisplayButton:function(){var a=this.model.get("state");if(a===b.NOT_VIEWABLE||a===b.DISCARDED||!this.model.get("accessible"))return null;var d={target:this.linkTarget,classes:"display-btn"};if(this.model.get("purged"))d.disabled=!0,d.title=e("Cannot display datasets removed from disk");else if(a===b.UPLOAD)d.disabled=!0,d.title=e("This dataset must finish uploading before it can be viewed");else if(a===b.NEW)d.disabled=!0,d.title=e("This dataset is not yet viewable");else{d.title=e("View data"),d.href=this.model.urls.display;var f=this;d.onclick=function(a){Galaxy.frame&&Galaxy.frame.active&&(Galaxy.frame.add_dataset(f.model.get("id")),a.preventDefault())}}return d.faIcon="fa-eye",c(d)},_renderDetails:function(){if(this.model.get("state")===b.NOT_VIEWABLE)return $(this.templates.noAccess(this.model.toJSON(),this));var a=f.prototype._renderDetails.call(this);return a.find(".actions .left").empty().append(this._renderSecondaryActions()),a.find(".summary").html(this._renderSummary()).prepend(this._renderDetailMessages()),a.find(".display-applications").html(this._renderDisplayApplications()),this._setUpBehaviors(a),a},_renderSummary:function(){var a=this.model.toJSON(),b=this.templates.summaries[a.state];return(b=b||this.templates.summaries.unknown)(a,this)},_renderDetailMessages:function(){var a=this,b=$('
'),c=a.model.toJSON();return _.each(a.templates.detailMessages,function(d){b.append($(d(c,a)))}),b},_renderDisplayApplications:function(){return this.model.isDeletedOrPurged()?"":[this.templates.displayApplications(this.model.get("display_apps"),this),this.templates.displayApplications(this.model.get("display_types"),this)].join("")},_renderSecondaryActions:function(){switch(this.debug("_renderSecondaryActions"),this.model.get("state")){case b.NOT_VIEWABLE:return[];case b.OK:case b.FAILED_METADATA:case b.ERROR:return[this._renderDownloadButton(),this._renderShowParamsButton()]}return[this._renderShowParamsButton()]},_renderShowParamsButton:function(){return c({title:e("View details"),classes:"params-btn",href:this.model.urls.show_params,target:this.linkTarget,faIcon:"fa-info-circle"})},_renderDownloadButton:function(){return this.model.get("purged")||!this.model.hasData()?null:_.isEmpty(this.model.get("meta_files"))?$(['',' "].join("")):this._renderMetaFileDownloadButton()},_renderMetaFileDownloadButton:function(){var a=this.model.urls;return $(['"].join("\n"))},events:_.extend(_.clone(f.prototype.events),{"click .display-btn":function(a){this.trigger("display",this,a)},"click .params-btn":function(a){this.trigger("params",this,a)},"click .download-btn":function(a){this.trigger("download",this,a)}}),toString:function(){var a=this.model?this.model+"":"(no model)";return"DatasetListItemView("+a+")"}});return g.prototype.templates=function(){var a=_.extend({},f.prototype.templates.warnings,{failed_metadata:d.wrapTemplate(['<% if( model.state === "failed_metadata" ){ %>','',e("An error occurred setting the metadata for this dataset"),"
","<% } %>"]),error:d.wrapTemplate(["<% if( model.error ){ %>",'',e("There was an error getting the data for this dataset"),": <%- model.error %>","
","<% } %>"]),purged:d.wrapTemplate(["<% if( model.purged ){ %>",'',e("This dataset has been deleted and removed from disk"),"
","<% } %>"]),deleted:d.wrapTemplate(["<% if( model.deleted && !model.purged ){ %>",'',e("This dataset has been deleted"),"
","<% } %>"])}),c=d.wrapTemplate(['','
','
","<% if( !dataset.deleted && !dataset.purged ){ %>",'
','
','
',"<% if( dataset.peek ){ %>",'
<%= dataset.peek %> ',"<% } %>","<% } %>","
','
',e("You do not have permission to view this dataset"),"
","
','<%- dataset.misc_blurb %> ',"
","<% } %>","<% if( dataset.file_ext ){ %>",'','',e("format")," ",'<%- dataset.file_ext %> ',"
","<% } %>","<% if( dataset.metadata_dbkey ){ %>",'','',e("database")," ",'',"<%- dataset.metadata_dbkey %>"," ","
","<% } %>","<% if( dataset.misc_info ){ %>",'','<%- dataset.misc_info %> ',"
","<% } %>"],"dataset"),h[b.NEW]=d.wrapTemplate(["",e("This is a new dataset and not all of its data are available yet"),"
"],"dataset"),h[b.NOT_VIEWABLE]=d.wrapTemplate(["",e("You do not have permission to view this dataset"),"
"],"dataset"),h[b.DISCARDED]=d.wrapTemplate(["",e("The job creating this dataset was cancelled before completion"),"
"],"dataset"),h[b.QUEUED]=d.wrapTemplate(["",e("This job is waiting to run"),"
"],"dataset"),h[b.RUNNING]=d.wrapTemplate(["",e("This job is currently running"),"
"],"dataset"),h[b.UPLOAD]=d.wrapTemplate(["",e("This dataset is currently uploading"),"
"],"dataset"),h[b.SETTING_METADATA]=d.wrapTemplate(["",e("Metadata is being auto-detected"),"
"],"dataset"),h[b.PAUSED]=d.wrapTemplate(["",e('This job is paused. Use the "Resume Paused Jobs" in the history menu to resume'),"
"],"dataset"),h[b.ERROR]=d.wrapTemplate(["<% if( !dataset.purged ){ %>","<%- dataset.misc_blurb %>
","<% } %>",'',e("An error occurred with this dataset"),": ",'<%- dataset.misc_info %>
'],"dataset"),h[b.EMPTY]=d.wrapTemplate(["",e("No data"),": <%- dataset.misc_blurb %>
"],"dataset"),h.unknown=d.wrapTemplate(['Error: unknown dataset state: "<%- dataset.state %>"
'],"dataset");var i={resubmitted:d.wrapTemplate(["<% if( model.resubmitted ){ %>",'',e("The job creating this dataset has been resubmitted"),"
","<% } %>"])},j=d.wrapTemplate(["<% _.each( apps, function( app ){ %>",'','
<%- app.label %> ','
',"<% _.each( app.links, function( link ){ %>",'',"<% print( _l( link.text ) ); %>"," ","<% }); %>"," ","
'),c=a.model.toJSON();return _.each(a.templates.detailMessages,function(d){b.append($(d(c,a)))}),b},_renderDisplayApplications:function(){return this.model.isDeletedOrPurged()?"":[this.templates.displayApplications(this.model.get("display_apps"),this),this.templates.displayApplications(this.model.get("display_types"),this)].join("")},_renderSecondaryActions:function(){switch(this.debug("_renderSecondaryActions"),this.model.get("state")){case b.NOT_VIEWABLE:return[];case b.OK:case b.FAILED_METADATA:case b.ERROR:return[this._renderDownloadButton(),this._renderShowParamsButton()]}return[this._renderShowParamsButton()]},_renderShowParamsButton:function(){return c({title:e("View details"),classes:"params-btn",href:this.model.urls.show_params,target:this.linkTarget,faIcon:"fa-info-circle"})},_renderDownloadButton:function(){return this.model.get("purged")||!this.model.hasData()?null:_.isEmpty(this.model.get("meta_files"))?$(['',' "].join("")):this._renderMetaFileDownloadButton()},_renderMetaFileDownloadButton:function(){var a=this.model.urls;return $(['"].join("\n"))},events:_.extend(_.clone(f.prototype.events),{"click .display-btn":function(a){this.trigger("display",this,a)},"click .params-btn":function(a){this.trigger("params",this,a)},"click .download-btn":function(a){this.trigger("download",this,a)}}),toString:function(){var a=this.model?this.model+"":"(no model)";return"DatasetListItemView("+a+")"}});return g.prototype.templates=function(){var a=_.extend({},f.prototype.templates.warnings,{failed_metadata:d.wrapTemplate(['<% if( model.state === "failed_metadata" ){ %>','',e("An error occurred setting the metadata for this dataset"),"
","<% } %>"]),error:d.wrapTemplate(["<% if( model.error ){ %>",'',e("There was an error getting the data for this dataset"),": <%- model.error %>","
","<% } %>"]),purged:d.wrapTemplate(["<% if( model.purged ){ %>",'',e("This dataset has been deleted and removed from disk"),"
","<% } %>"]),deleted:d.wrapTemplate(["<% if( model.deleted && !model.purged ){ %>",'',e("This dataset has been deleted"),"
","<% } %>"])}),c=d.wrapTemplate(['','
','
","<% if( !dataset.deleted && !dataset.purged ){ %>",'
','
','
',"<% if( dataset.peek ){ %>",'
<%= dataset.peek %> ',"<% } %>","<% } %>","
','
',e("You do not have permission to view this dataset"),"
","
','<%- dataset.misc_blurb %> ',"
","<% } %>","<% if( dataset.file_ext ){ %>",'','',e("format")," ",'<%- dataset.file_ext %> ',"
","<% } %>","<% if( dataset.metadata_dbkey ){ %>",'','',e("database")," ",'',"<%- dataset.metadata_dbkey %>"," ","
","<% } %>","<% if( dataset.misc_info ){ %>",'','<%- dataset.misc_info %> ',"
","<% } %>"],"dataset"),h[b.NEW]=d.wrapTemplate(["",e("This is a new dataset and not all of its data are available yet"),"
"],"dataset"),h[b.NOT_VIEWABLE]=d.wrapTemplate(["",e("You do not have permission to view this dataset"),"
"],"dataset"),h[b.DISCARDED]=d.wrapTemplate(["",e("The job creating this dataset was cancelled before completion"),"
"],"dataset"),h[b.QUEUED]=d.wrapTemplate(["",e("This job is waiting to run"),"
"],"dataset"),h[b.RUNNING]=d.wrapTemplate(["",e("This job is currently running"),"
"],"dataset"),h[b.UPLOAD]=d.wrapTemplate(["",e("This dataset is currently uploading"),"
"],"dataset"),h[b.SETTING_METADATA]=d.wrapTemplate(["",e("Metadata is being auto-detected"),"
"],"dataset"),h[b.PAUSED]=d.wrapTemplate(["",e('This job is paused. Use the "Resume Paused Jobs" in the history menu to resume'),"
"],"dataset"),h[b.ERROR]=d.wrapTemplate(["<% if( !dataset.purged ){ %>","<%- dataset.misc_blurb %>
","<% } %>",'',e("An error occurred with this dataset"),": ",'<%- dataset.misc_info %>
'],"dataset"),h[b.EMPTY]=d.wrapTemplate(["",e("No data"),": <%- dataset.misc_blurb %>
"],"dataset"),h.unknown=d.wrapTemplate(['Error: unknown dataset state: "<%- dataset.state %>"
'],"dataset");var i={resubmitted:d.wrapTemplate(["<% if( model.resubmitted ){ %>",'',e("The job creating this dataset has been resubmitted"),"
","<% } %>"])},j=d.wrapTemplate(["<% _.each( apps, function( app ){ %>",'','
<%- app.label %> ','
',"<% _.each( app.links, function( link ){ %>",'',"<% print( _l( link.text ) ); %>"," ","<% }); %>"," ","
"+k+" selection(s) while a previous field contains "+d+" ."),!1}}else console.debug("tools-jobs::_validation - Retrieving input objects failed.")}return!0},_refreshHdas:function(a){parent.Galaxy&&parent.Galaxy.currHistoryPanel&&parent.Galaxy.currHistoryPanel.refreshContents(a)}}});
+define(["utils/utils","mvc/tools/tools-template"],function(a,b){return{submit:function(c,d,e){var f=this,g={tool_id:d.id,tool_version:d.version,inputs:c.data.create()};return c.trigger("reset"),this._validation(c,g)?(console.debug(g),void a.request({type:"POST",url:galaxy_config.root+"api/tools",data:g,success:function(a){e&&e(),c.reciept(b.success(a)),f._refreshHdas()},error:function(a){if(e&&e(),a&&a.message&&a.message.data){var d=c.data.matchResponse(a.message.data);for(var f in d){c.highlight(f,d[f]);break}}else console.debug(a),a&&c.modal.show({title:"Job submission failed",body:b.error(g),buttons:{Close:function(){c.modal.hide()}}})}})):(console.debug("tools-jobs::submit - Submission canceled. Validation failed."),void(e&&e()))},_validation:function(a,b){var c=b.inputs,d=-1,e=null;for(var f in c){var g=c[f],h=a.data.match(f),i=a.field_list[h],j=a.input_list[h];if(h&&j&&i){if(!j.optional&&null==g)return a.highlight(h),!1;if(g&&g.batch){var k=g.values.length,l=null;if(k>0&&(l=g.values[0]&&g.values[0].src),l)if(null===e)e=l;else if(e!==l)return a.highlight(h,"Please select either dataset or dataset list fields for all batch mode fields."),!1;if(-1===d)d=k;else if(d!==k)return a.highlight(h,"Please make sure that you select the same number of inputs for all batch mode fields. This field contains "+k+" selection(s) while a previous field contains "+d+" ."),!1}}else console.debug("tools-jobs::_validation - Retrieving input objects failed.")}return!0},_refreshHdas:function(a,b){parent.Galaxy&&parent.Galaxy.currHistoryPanel&&parent.Galaxy.currHistoryPanel.refreshContents(a,b)}}});
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