From b45b74f3ec4a674a1f9e394eaa8cfb228b49f0ba Mon Sep 17 00:00:00 2001
From: Guruprasad Anada <gua110@bx.psu.edu>
Date: Tue, 3 Feb 2009 18:34:27 -0500
Subject: [PATCH] Fixes to get functional tests working.

---
 tools/hyphy/hyphy_branch_lengths_wrapper.xml | 2 +-
 tools/regVariation/getIndels.py              | 6 ++++--
 tools/regVariation/quality_filter.py         | 5 ++++-
 3 files changed, 9 insertions(+), 4 deletions(-)

diff --git a/tools/hyphy/hyphy_branch_lengths_wrapper.xml b/tools/hyphy/hyphy_branch_lengths_wrapper.xml
index 66aa45c1fe1..e11271d4706 100644
--- a/tools/hyphy/hyphy_branch_lengths_wrapper.xml
+++ b/tools/hyphy/hyphy_branch_lengths_wrapper.xml
@@ -1,4 +1,4 @@
-<?xml version="1.1.0"?>
+<?xml version="1.2.0"?>
 <tool name="Branch Lengths" id="hyphy_branch_lengths_wrapper1">
 	
 	<description>Estimation</description>
diff --git a/tools/regVariation/getIndels.py b/tools/regVariation/getIndels.py
index d18b12e912c..19ae356d91f 100644
--- a/tools/regVariation/getIndels.py
+++ b/tools/regVariation/getIndels.py
@@ -10,8 +10,10 @@ from __future__ import division
 from galaxy import eggs
 import pkg_resources 
 pkg_resources.require( "bx-python" )
-pkg_resources.require("numpy")
-
+try:
+    pkg_resources.require("numpy")
+except:
+    pass
 import psyco_full
 import sys
 from bx.cookbook import doc_optparse
diff --git a/tools/regVariation/quality_filter.py b/tools/regVariation/quality_filter.py
index 9e0cb06a25f..033443f161f 100644
--- a/tools/regVariation/quality_filter.py
+++ b/tools/regVariation/quality_filter.py
@@ -12,7 +12,10 @@ from galaxy import eggs
 import pkg_resources 
 pkg_resources.require( "bx-python" )
 pkg_resources.require( "lrucache" )
-pkg_resources.require("numpy")
+try:
+    pkg_resources.require("numpy")
+except:
+    pass
 
 import psyco_full
 import sys