',
'
'
].join(''));
},
diff --git a/client/galaxy/style/less/galaxy_bootstrap/overrides.less b/client/galaxy/style/less/galaxy_bootstrap/overrides.less
index 1d4ac947707..4b81980b31e 100644
--- a/client/galaxy/style/less/galaxy_bootstrap/overrides.less
+++ b/client/galaxy/style/less/galaxy_bootstrap/overrides.less
@@ -94,3 +94,11 @@ div.ui-form-help {
}
}
}
+
+// pre styling
+pre.code {
+ white-space: pre-wrap;
+ background: #1d1f21;
+ color: white;
+ padding: 1em;
+}
diff --git a/config/datatypes_conf.xml.sample b/config/datatypes_conf.xml.sample
index 84c3ec9a89d..982f1810ae5 100644
--- a/config/datatypes_conf.xml.sample
+++ b/config/datatypes_conf.xml.sample
@@ -242,6 +242,8 @@
',
@@ -951,6 +963,13 @@ var LibraryDatasetView = Backbone.View.extend({
'Miscellaneous blurb ',
'<%= _.escape(item.get("misc_blurb")) %> ',
'',
+ //TODO: add functionality to modify tags here
+ '<% if (item.get("tags")) { %>',
+ '',
+ 'Tags ',
+ '<%= _.escape(item.get("tags")) %> ',
+ ' ',
+ '<% } %>',
'',
'',
'',
diff --git a/client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js b/client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js
index d6a13549869..3532e30987d 100644
--- a/client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js
+++ b/client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js
@@ -675,6 +675,7 @@ var FolderToolbarView = Backbone.View.extend({
var link_data = this.modal.$el.find( '.link-checkbox' ).is( ':checked' );
var file_type = this.select_extension.value();
var dbkey = this.select_genome.value();
+ var tag_using_filenames = this.modal.$el.find( '.tag-files' ).is( ':checked' );
var selection_type = selected_nodes[0].type;
var paths = [];
if ( selected_nodes.length < 1 ){
@@ -694,13 +695,15 @@ var FolderToolbarView = Backbone.View.extend({
link_data: link_data,
source: full_source,
file_type: file_type,
- dbkey: dbkey } );
+ dbkey: dbkey,
+ tag_using_filenames: tag_using_filenames } );
} else if ( selection_type === 'file' ){
var full_source = options.source + '_file';
this.chainCallImportingUserdirFiles( { paths : paths,
file_type: file_type,
dbkey: dbkey,
- source: full_source } );
+ source: full_source,
+ tag_using_filenames: tag_using_filenames } );
}
}
},
@@ -794,9 +797,10 @@ var FolderToolbarView = Backbone.View.extend({
},
/**
- * Take the array of paths and createa request for each of them
+ * Take the array of paths and create a request for each of them
* calling them in chain. Update the progress bar in between each.
- * @param {array} paths paths relative to user folder on Galaxy
+ * @param {array} paths paths relative to user folder on Galaxy
+ * @param {boolean} tag_using_filenames add tags to datasets using names of files
*/
chainCallImportingUserdirFiles: function( options ){
@@ -815,7 +819,8 @@ var FolderToolbarView = Backbone.View.extend({
'&source=' + options.source +
'&path=' + popped_item +
'&file_type=' + options.file_type +
- '&dbkey=' + options.dbkey ) )
+ '&dbkey=' + options.dbkey +
+ '&tag_using_filenames=' + options.tag_using_filenames ) )
promise.done( function( response ){
that.updateProgress();
that.chainCallImportingUserdirFiles( options );
@@ -830,11 +835,12 @@ var FolderToolbarView = Backbone.View.extend({
/**
* Take the array of paths and createa request for each of them
* calling them in chain. Update the progress bar in between each.
- * @param {array} paths paths relative to Galaxy root folder
- * @param {boolean} preserve_dirs indicates whether to preserve folder structure
- * @param {boolean} link_data copy files to Galaxy or link instead
- * @param {str} source string representing what type of folder
- * is the source of import
+ * @param {array} paths paths relative to Galaxy root folder
+ * @param {boolean} preserve_dirs indicates whether to preserve folder structure
+ * @param {boolean} link_data copy files to Galaxy or link instead
+ * @param {str} source string representing what type of folder
+ * is the source of import
+ * @param {boolean} tag_using_filenames add tags to datasets using names of files
*/
chainCallImportingFolders: function( options ){
// TODO need to check which paths to call
@@ -856,7 +862,8 @@ var FolderToolbarView = Backbone.View.extend({
'&preserve_dirs=' + options.preserve_dirs +
'&link_data=' + options.link_data +
'&file_type=' + options.file_type +
- '&dbkey=' + options.dbkey ) )
+ '&dbkey=' + options.dbkey +
+ '&tag_using_filenames=' + options.tag_using_filenames ) )
promise.done(function(response){
that.updateProgress();
that.chainCallImportingFolders( options );
@@ -1341,7 +1348,13 @@ var FolderToolbarView = Backbone.View.extend({
'',
'Type: ',
'Genome: ',
- '',
+ '',
+ '',
+ '',
+ '',
'Error Localization
| Dataset | ${dataset_id} (${dataset_id_encoded}) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Dataset | ${dataset_id} (${dataset_id_encoded}) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| History | ${history_id} (${history_id_encoded}) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Failed Job | ${hid}: ${history_item_name} (${hda_id_encoded}) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| ");e&&a.css("width",e),i&&a.css("text-align",i),this.row.append(a.append(t))},append:function(t,e){this._commit(t,e,!1)},prepend:function(t,e){this._commit(t,e,!0)},get:function(t){return this.$("#"+t)},del:function(t){var e=this.$tbody.find("#"+t);e.length>0&&(e.remove(),this.row_count--,this._refresh())},delAll:function(){this.$tbody.empty(),this.row_count=0,this._refresh()},value:function(t){if(this.options.selectable){this.before=this.$tbody.find(".current").attr("id"),void 0!==t&&(this.$tbody.find("tr").removeClass("current"),t&&this.$tbody.find("#"+t).addClass("current"));var e=this.$tbody.find(".current").attr("id");return void 0===e?null:(e!=this.before&&this.options.onchange&&this.options.onchange(t),e)}},size:function(){return this.$tbody.find("tr").length},_commit:function(t,e,i){this.del(t),this.row.attr("id",t),i?this.$tbody.prepend(this.row):this.$tbody.append(this.row),e&&(this.row.hide(),this.row.fadeIn()),this.row=this._row(),this.row_count++,this._refresh()},_row:function(){return l(' | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
"}});return{View:e}}.apply(e,a),!(void 0!==s&&(t.exports=s))}).call(e,i(2),i(1))},,,,,,function(t,e,i){var a,s;(function(i,n,l){a=[],s=function(){return i.View.extend({initialize:function(t,e){this.app=t,this.app_options=t.model?t.model.attributes:{},this.field=e&&e.field||new i.View,this.model=e&&e.model||new i.Model({text_enable:this.app_options.text_enable||"Enable",text_disable:this.app_options.text_disable||"Disable",cls_enable:this.app_options.cls_enable||"fa fa-caret-square-o-down",cls_disable:this.app_options.cls_disable||"fa fa-caret-square-o-up",always_refresh:this.app_options.always_refresh}).set(e),this.setElement(this._template()),this.$field=this.$(".ui-form-field"),this.$info=this.$(".ui-form-info"),this.$preview=this.$(".ui-form-preview"),this.$collapsible=this.$(".ui-form-collapsible"),this.$collapsible_text=this.$(".ui-form-collapsible-text"),this.$collapsible_icon=this.$(".ui-form-collapsible-icon"),this.$title=this.$(".ui-form-title"),this.$title_text=this.$(".ui-form-title-text"),this.$error_text=this.$(".ui-form-error-text"),this.$error=this.$(".ui-form-error"),this.$backdrop=this.$(".ui-form-backdrop"),this.$field.prepend(this.field.$el);var a=this.model.get("collapsible_value");this.field.collapsed=void 0!==a&&JSON.stringify(this.model.get("value"))==JSON.stringify(a),this.listenTo(this.model,"change",this.render,this),this.render();var s=this;this.$collapsible.on("click",function(){s.field.collapsed=!s.field.collapsed,t.trigger&&t.trigger("change"),s.render()}),this.field.model&&!this.model.get("always_refresh")&&this.listenTo(this.field.model,"change:value",function(){s.reset()})},backdrop:function(){this.model.set("backdrop",!0)},error:function(t){this.model.set("error_text",t)},reset:function(){!this.model.get("fixed")&&this.model.set("error_text",null)},render:function(){n(".tooltip").hide();var t=this.model.get("help",""),e=this.model.get("argument");e&&t.indexOf("("+e+")")==-1&&(t+=" ("+e+")"),this.$info.html(t),this.$el[this.model.get("hidden")?"hide":"show"](),this.$preview[this.field.collapsed&&this.model.get("collapsible_preview")||this.model.get("disabled")?"show":"hide"]().html(l.escape(this.model.get("text_value")));var i=this.model.get("error_text");if(this.$error[i?"show":"hide"](),this.$el[i?"addClass":"removeClass"]("ui-error"),this.$error_text.html(i),this.$backdrop[this.model.get("backdrop")?"show":"hide"](),this.field.collapsed||this.model.get("disabled")?this.$field.hide():this.$field.show(),this.field.model&&this.field.model.set({color:this.model.get("color"),style:this.model.get("style")}),this.model.get("disabled")||void 0===this.model.get("collapsible_value"))this.$title_text.show().text(this.model.get("label")),this.$collapsible.hide();else{var a=this.field.collapsed?"enable":"disable";this.$title_text.hide(),this.$collapsible.show(),this.$collapsible_text.text(this.model.get("label")),this.$collapsible_icon.removeClass().addClass("icon").addClass(this.model.get("cls_"+a)).attr("data-original-title",this.model.get("text_"+a)).tooltip({placement:"bottom"})}},_template:function(){return n("").addClass("ui-form-element").append(n("").addClass("ui-form-error ui-error").append(n("").addClass("fa fa-arrow-down")).append(n("").addClass("ui-form-error-text"))).append(n("").addClass("ui-form-title").append(n("").addClass("ui-form-collapsible").append(n("").addClass("ui-form-collapsible-icon")).append(n("").addClass("ui-form-collapsible-text"))).append(n("").addClass("ui-form-title-text"))).append(n("").addClass("ui-form-field").append(n("").addClass("ui-form-info")).append(n("").addClass("ui-form-backdrop"))).append(n("").addClass("ui-form-preview"))}})}.apply(e,a),!(void 0!==s&&(t.exports=s))}).call(e,i(2),i(1),i(3))},function(t,e,i){var a,s;(function(n,l,o){a=[i(4),i(5),i(37),i(39),i(38),i(35)],s=function(t,e,i,a,s,r){return n.Model.extend({types:{text:"_fieldText",password:"_fieldText",select:"_fieldSelect",data_column:"_fieldSelect",genomebuild:"_fieldSelect",data:"_fieldData",data_collection:"_fieldData",integer:"_fieldSlider",float:"_fieldSlider",boolean:"_fieldBoolean",drill_down:"_fieldDrilldown",color:"_fieldColor",hidden:"_fieldHidden",hidden_data:"_fieldHidden",baseurl:"_fieldHidden",library_data:"_fieldLibrary",ftpfile:"_fieldFtp",upload:"_fieldUpload"},create:function(t){var e=this.types[t.type],i="function"==typeof this[e]?this[e].call(this,t):null;return i||(i=t.options?this._fieldSelect(t):this._fieldText(t),Galaxy.emit.debug("form-parameters::_addRow()","Auto matched field type ("+t.type+").")),void 0===t.value&&(t.value=null),i.value(t.value),i},_fieldData:function(t){return new i.View({id:"field-"+t.id,extensions:t.extensions,optional:t.optional,multiple:t.multiple,type:t.type,flavor:t.flavor,data:t.options,onchange:t.onchange})},_fieldSelect:function(t){if(t.is_workflow)return this._fieldText(t);"data_column"==t.type&&(t.error_text="Missing columns in referenced dataset.");var i=t.data;i||(i=[],l.each(t.options,function(t){i.push({label:t[0],value:t[1]})}));var a=e.Select;switch(t.display){case"checkboxes":a=e.Checkbox;break;case"radio":a=e.Radio;break;case"radiobutton":a=e.RadioButton}return new a.View({id:"field-"+t.id,data:i,error_text:t.error_text||"No options available",multiple:t.multiple,optional:t.optional,onchange:t.onchange,searchable:"workflow"!==t.flavor})},_fieldDrilldown:function(t){return t.is_workflow?this._fieldText(t):new e.Drilldown.View({id:"field-"+t.id,data:t.options,display:t.display,optional:t.optional,onchange:t.onchange})},_fieldText:function(i){if(i.options&&i.data)if(i.area=i.multiple,t.isEmpty(i.value))i.value=null;else if(o.isArray(i.value)){var a="";for(var s in i.value){if(a+=String(i.value[s]),!i.multiple)break;a+="\n"}i.value=a}return new e.Input({id:"field-"+i.id,type:i.type,area:i.area,readonly:i.readonly,placeholder:i.placeholder,datalist:i.datalist,onchange:i.onchange})},_fieldSlider:function(t){return new e.Slider.View({id:"field-"+t.id,precise:"float"==t.type,is_workflow:t.is_workflow,min:t.min,max:t.max,onchange:t.onchange})},_fieldHidden:function(t){return new e.Hidden({id:"field-"+t.id,info:t.info})},_fieldBoolean:function(t){return new e.RadioButton.View({id:"field-"+t.id,data:[{label:"Yes",value:"true"},{label:"No",value:"false"}],onchange:t.onchange})},_fieldColor:function(t){return new r({id:"field-"+t.id,onchange:t.onchange})},_fieldLibrary:function(t){return new a.View({id:"field-"+t.id,optional:t.optional,multiple:t.multiple,onchange:t.onchange})},_fieldFtp:function(t){return new s.View({id:"field-"+t.id,optional:t.optional,multiple:t.multiple,onchange:t.onchange})},_fieldUpload:function(t){return new e.Upload({id:"field-"+t.id,onchange:t.onchange})}})}.apply(e,a),!(void 0!==s&&(t.exports=s))}).call(e,i(2),i(3),i(1))},function(t,e,i){var a,s;(function(n,l,o){a=[i(4),i(9),i(5)],s=function(t,e,i){var a=n.View.extend({initialize:function(e){this.list={},this.options=t.merge(e,{title:"Repeat",empty_text:"Not available.",max:null,min:null}),this.button_new=new i.ButtonIcon({icon:"fa-plus",title:"Insert "+this.options.title,tooltip:"Add new "+this.options.title+" block",cls:"ui-button-icon ui-clear-float form-repeat-add",onclick:function(){e.onnew&&e.onnew()}}),this.setElement(l("").append(this.$list=l("")).append(l("").append(this.button_new.$el)))},size:function(){return o.size(this.list)},add:function(t){if(!t.id||this.list[t.id])return void Galaxy.emit.debug("form-repeat::add()","Duplicate or invalid repeat block id.");var a=new i.ButtonIcon({icon:"fa-trash-o",tooltip:"Delete this repeat block",cls:"ui-button-icon-plain form-repeat-delete",onclick:function(){t.ondel&&t.ondel()}}),s=new e.View({id:t.id,title:"placeholder",cls:t.cls||"ui-portlet-repeat",operations:{button_delete:a}});s.append(t.$el),s.$el.addClass("section-row").hide(),this.list[t.id]=s,this.$list.append(s.$el.fadeIn("fast")),this.options.max>0&&this.size()>=this.options.max&&this.button_new.disable(),this._refresh()},del:function(t){return this.list[t]?(this.$list.find("#"+t).remove(),delete this.list[t],this.button_new.enable(),void this._refresh()):void Galaxy.emit.debug("form-repeat::del()","Invalid repeat block id.")},delAll:function(){for(var t in this.list)this.del(t)},hideOptions:function(){this.button_new.$el.hide(),o.each(this.list,function(t){t.hideOperation("button_delete")}),o.isEmpty(this.list)&&this.$el.append(l("").addClass("ui-form-info").html(this.options.empty_text))},_refresh:function(){var t=0;for(var e in this.list){var i=this.list[e];i.title(++t+": "+this.options.title),i[this.size()>this.options.min?"showOperation":"hideOperation"]("button_delete")}}});return{View:a}}.apply(e,a),!(void 0!==s&&(t.exports=s))}).call(e,i(2),i(1),i(3))},function(t,e,i){var a,s;(function(n,l,o,r){a=[i(4),i(5),i(9),i(31),i(29),i(30)],s=function(t,e,i,a,s,d){var c=n.View.extend({initialize:function(t,e){this.app=t,this.inputs=e.inputs,this.parameters=new d,this.setElement(l("")),this.render()},render:function(){var t=this;this.$el.empty(),o.each(this.inputs,function(e){t.add(e)})},add:function(e){var i=r.extend(!0,{},e);switch(i.id=e.id=t.uid(),this.app.input_list[i.id]=i,i.type){case"conditional":this._addConditional(i);break;case"repeat":this._addRepeat(i);break;case"section":this._addSection(i);break;default:this._addRow(i)}},_addConditional:function(t){var e=this;t.test_param.id=t.id,this.app.model.get("sustain_conditionals")&&(t.test_param.disabled=!0);var i=this._addRow(t.test_param);i.model&&i.model.set("onchange",function(i){var a=e.app.data.matchCase(t,i);for(var s in t.cases){var n=t.cases[s],l=e.$("#"+t.id+"-section-"+s),o=!1;for(var r in n.inputs)if(!n.inputs[r].hidden){o=!0;break}s==a&&o?l.fadeIn("fast"):l.hide()}e.app.trigger("change")});for(var a in t.cases){var s=new c(this.app,{inputs:t.cases[a].inputs});this._append(s.$el.addClass("ui-form-section"),t.id+"-section-"+a)}i.trigger("change")},_addRepeat:function(t){function e(e){var a=t.id+"-section-"+n++,s=new c(i.app,{inputs:e});l.add({id:a,$el:s.$el,ondel:function(){l.del(a),i.app.trigger("change")}})}for(var i=this,n=0,l=new a.View({title:t.title||"Repeat",min:t.min,max:t.max,onnew:function(){e(t.inputs),i.app.trigger("change")}}),r=o.size(t.cache),d=0;d
'+this.grid_table(t),t.info_text&&(e+='
";t.show_item_checkboxes&&(e+="",t.items.length>0&&(e+=''),e+=" ");for(var i in t.columns){var a=t.columns[i];a.visible&&(e+='',e+=a.href?''+a.label+"":a.label,e+=''+a.extra+" ")}return e+=" "},body:function(t){var e="",i=0,a=t.items.length;0==a&&(e+='No Items ",t.show_item_checkboxes&&(e+='",h?(0!=t.operations.length&&(e+=' "}}e+=" ",i++}return e},footer:function(t){var e="";if(t.use_paging&&t.num_pages>1){var a=t.num_page_links,s=t.cur_page_num,n=t.num_pages,l=a/2,o=s-l,r=0;o<=0&&(o=1,r=l-(s-o));var d=l+r,c=s+d;c<=n?max_offset=0:(c=n,max_offset=d-(c+1-s)),0!=max_offset&&(o-=max_offset,o<1&&(o=1)),e+='',t.show_item_checkboxes&&(e+="Page:',o>1&&(e+='1 ...');for(var h=o;h'+h+" ":''+h+"";c'+n+""),e+="",e+=' | Show All '}if(t.show_item_checkboxes){e+='For selected items: ';for(i in t.operations){var u=t.operations[i];u.allow_multiple&&(e+=' ')}e+=" ';for(i in t.operations){var u=t.operations[i];u.global_operation&&(e+=''+u.label+"")}e+=" '+t.legend+"
",h+='
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l.isArray(e)&&e.length>0&&this.$el.autocomplete({source:function(e,i){i(t.model.get("datalist"))},change:function(){t._onchange()}}),this.model.get("value")!==this.$el.val()&&this.$el.val(this.model.get("value")),o.each(["readonly","disabled"],function(e){t.model.get(e)?t.$el.attr(e,!0):t.$el.removeAttr(e)}),this.$el[this.model.get("visible")?"show":"hide"](),this},_onchange:function(){this.value(this.$el.val()),this.model.get("onchange")&&this.model.get("onchange")(this.model.get("value"))}}),f=n.View.extend({initialize:function(t){this.model=t&&t.model||new n.Model(t),this.setElement(l("").append(this.$info=l("")).append(this.$hidden=l(""))),this.listenTo(this.model,"change",this.render,this),this.render()},value:function(t){return void 0!==t&&this.model.set("value",t),this.model.get("value")},render:function(){return this.$el.attr("id",this.model.id),this.$hidden.val(this.model.get("value")),this.model.get("info")?this.$info.show().text(this.model.get("info")):this.$info.hide(),this}}),m=n.View.extend({initialize:function(t){var e=this;this.model=t&&t.model||new n.Model(t),this.setElement(l("").append(this.$info=l("")).append(this.$file=l("").attr("type","file").addClass("ui-margin-bottom")).append(this.$text=l("").addClass("ui-textarea").attr("disabled",!0)).append(this.$wait=l("").addClass("fa fa-spinner fa-spin"))),this.listenTo(this.model,"change",this.render,this),this.$file.on("change",function(t){e._readFile(t)}),this.render()},value:function(t){return void 0!==t&&this.model.set("value",t),this.model.get("value")},render:function(){return this.$el.attr("id",this.model.id),this.model.get("info")?this.$info.show().text(this.model.get("info")):this.$info.hide(),this.model.get("value")?this.$text.text(this.model.get("value")).show():this.$text.hide(),this.model.get("wait")?this.$wait.show():this.$wait.hide(),this},_readFile:function(t){var e=this,i=t.target.files&&t.target.files[0];if(i){var a=new FileReader;a.onload=function(){e.model.set({wait:!1,value:this.result})},this.model.set({wait:!0,value:null}),a.readAsText(i)}}});return{Button:r.ButtonDefault,ButtonIcon:r.ButtonIcon,ButtonCheck:r.ButtonCheck,ButtonMenu:r.ButtonMenu,ButtonLink:r.ButtonLink,Input:p,Label:c,Message:h,UnescapedMessage:u,Upload:m,Modal:d,RadioButton:a.RadioButton,Checkbox:a.Checkbox,Radio:a.Radio,Select:e,Hidden:f,Slider:i,Drilldown:s}}.apply(e,a),!(void 0!==s&&(t.exports=s))}).call(e,i(2),i(1),i(3))},,,,function(t,e,i){var a,s;(function(n,l,o){a=[i(4),i(5)],s=function(t,e){var i=n.View.extend({visible:!1,initialize:function(i){var a=this;this.model=i&&i.model||new n.Model({id:t.uid(),cls:"ui-portlet",title:"",icon:"",buttons:null,body:null,scrollable:!0,nopadding:!1,operations:null,collapsible:!1,collapsible_button:!1,collapsed:!1,onchange_title:null}).set(i),this.setElement(this._template()),this.$body=this.$(".portlet-body"),this.$title_text=this.$(".portlet-title-text"),this.$title_icon=this.$(".portlet-title-icon"),this.$header=this.$(".portlet-header"),this.$content=this.$(".portlet-content"),this.$backdrop=this.$(".portlet-backdrop"),this.$buttons=this.$(".portlet-buttons"),this.$operations=this.$(".portlet-operations"),this.model.get("body")&&this.append(this.model.get("body")),this.collapsible_button=new e.ButtonIcon({icon:"fa-eye",tooltip:"Collapse/Expand",cls:"ui-button-icon-plain",onclick:function(){a[a.collapsed?"expand":"collapse"]()}}),this.render()},render:function(){var t=this,e=this.model.attributes;return this.$el.removeClass().addClass(e.cls).attr("id",e.id),this.$header[e.title?"show":"hide"](),this.$title_text.html(e.title),l.each([this.$content,this.$body],function(t){t[e.nopadding?"addClass":"removeClass"]("no-padding")}),e.icon?this.$title_icon.removeClass().addClass("portlet-title-icon fa").addClass(e.icon).show():this.$title_icon.hide(),this.$title_text[e.collapsible?"addClass":"removeClass"]("no-highlight collapsible").off(),e.collapsible&&(this.$title_text.on("click",function(){t[t.collapsed?"expand":"collapse"]()}),e.collapsed?this.collapse():this.expand()),this.$title_text.prop("disabled",!e.onchange_title),e.onchange_title&&this.$title_text.make_text_editable({on_finish:function(t){e.onchange_title(t)}}),e.buttons?(this.$buttons.empty().show(),o.each(this.model.get("buttons"),function(e,i){i.$el.prop("id",e),t.$buttons.append(i.$el)})):this.$buttons.hide(),this.$operations.empty,e.collapsible_button&&this.$operations.append(this.collapsible_button.$el),e.operations&&o.each(e.operations,function(e,i){i.$el.prop("id",e),t.$operations.append(i.$el)}),this},append:function(t){this.$body.append(t)},empty:function(){this.$body.empty()},header:function(){return this.$header},body:function(){return this.$body},show:function(){this.visible=!0,this.$el.fadeIn("fast")},hide:function(){this.visible=!1,this.$el.hide()},enableButton:function(t){this.$buttons.find("#"+t).prop("disabled",!1)},disableButton:function(t){this.$buttons.find("#"+t).prop("disabled",!0)},hideOperation:function(t){this.$operations.find("#"+t).hide()},showOperation:function(t){this.$operations.find("#"+t).show()},setOperation:function(t,e){this.$operations.find("#"+t).off("click").on("click",e)},title:function(t){return t&&this.$title_text.html(t),this.$title_text.html()},collapse:function(){this.collapsed=!0,this.$content.height("0%"),this.$body.hide(),this.collapsible_button.setIcon("fa-eye-slash")},expand:function(){this.collapsed=!1,this.$content.height("100%"),this.$body.fadeIn("fast"),this.collapsible_button.setIcon("fa-eye")},disable:function(){this.$backdrop.show()},enable:function(){this.$backdrop.hide()},_template:function(){return o("").append(o("").addClass("portlet-header").append(o("").addClass("portlet-operations")).append(o("").addClass("portlet-title").append(o("").addClass("portlet-title-icon")).append(o("").addClass("portlet-title-text")))).append(o("").addClass("portlet-content").append(o("").addClass("portlet-body")).append(o("").addClass("portlet-buttons"))).append(o("").addClass("portlet-backdrop"))}});return{View:i}}.apply(e,a),!(void 0!==s&&(t.exports=s))}).call(e,i(2),i(3),i(1))},function(t,e,i){var a,s;(function(n,l,o){a=[i(4),i(9),i(5),i(32),i(19)],s=function(t,e,i,a,s){return n.View.extend({initialize:function(t){this.model=new n.Model({initial_errors:!1,cls:"ui-portlet-limited",icon:null,always_refresh:!0,status:"warning"}).set(t),this.setElement(""),this.render()},update:function(t){var e=this;this.data.matchModel(t,function(t,i){var a=e.input_list[i];if(a&&a.options&&!l.isEqual(a.options,t.options)){a.options=t.options;var s=e.field_list[i];if(s.update){var n=[];if(["data","data_collection","drill_down"].indexOf(a.type)!=-1)n=a.options;else for(var o in t.options){var r=t.options[o];r.length>2&&n.push({label:r[0],value:r[1]})}s.update(n),s.trigger("change"),Galaxy.emit.debug("form-view::update()","Updating options for "+i)}}})},wait:function(t){for(var e in this.input_list){var i=this.field_list[e],a=this.input_list[e];a.is_dynamic&&i.wait&&i.unwait&&i[t?"wait":"unwait"]()}},highlight:function(t,e,i){var a=this.element_list[t];if(a&&(a.error(e||"Please verify this parameter."),this.portlet.expand(),this.trigger("expand",t),!i)){var s=this.$el.parents().filter(function(){return["auto","scroll"].indexOf(o(this).css("overflow"))!=-1}).first();s.animate({scrollTop:s.scrollTop()+a.$el.offset().top-120},500)}},errors:function(t){if(this.trigger("reset"),t&&t.errors){var e=this.data.matchResponse(t.errors);for(var i in this.element_list){this.element_list[i];e[i]&&this.highlight(i,e[i],!0)}}},render:function(){var t=this;this.off("change"),this.off("reset"),this.field_list={},this.input_list={},this.element_list={},this.data=new s.Manager(this),this._renderForm(),this.data.create(),this.model.get("initial_errors")&&this.errors(this.model.attributes);var e=this.data.checksum();return this.on("change",function(i){var a=t.input_list[i];if(!a||a.refresh_on_change||t.model.get("always_refresh")){var s=t.data.checksum();s!=e&&(e=s,t.model.get("onchange")&&t.model.get("onchange")())}}),this.on("reset",function(){l.each(t.element_list,function(t){t.reset()})}),this},_renderForm:function(){o(".tooltip").remove();var t=this.model.attributes;this.message=new i.UnescapedMessage,this.section=new a.View(this,{inputs:t.inputs}),this.portlet=new e.View({icon:t.icon,title:t.title,cls:t.cls,operations:t.operations,buttons:t.buttons,collapsible:t.collapsible,collapsed:t.collapsed,onchange_title:t.onchange_title}),this.portlet.append(this.message.$el),this.portlet.append(this.section.$el),this.$el.empty(),t.inputs&&this.$el.append(this.portlet.$el),t.message&&this.message.update({persistent:!0,status:t.status,message:t.message}),Galaxy.emit.debug("form-view::initialize()","Completed")}})}.apply(e,a),!(void 0!==s&&(t.exports=s))}).call(e,i(2),i(3),i(1))},function(t,e,i){var a,s;(function(n,l){a=[i(4)],s=function(t){var e=n.View.extend({initialize:function(e){this.model=e&&e.model||new n.Model({id:t.uid(),title:"",icon:"",cls:"btn btn-default",wait:!1,wait_text:"Sending...",wait_cls:"btn btn-info",disabled:!1,percentage:-1}).set(e),this.setElement(l("").attr("type","button").append(this.$icon=l("")).append(this.$title=l("")).append(this.$progress=l("").append(this.$progress_bar=l("")))),this.listenTo(this.model,"change",this.render,this),this.render()},render:function(){var t=this,e=this.model.attributes;this.$el.removeClass().addClass("ui-button-default").addClass(e.disabled&&"disabled").attr("id",e.id).attr("disabled",e.disabled).off("click").on("click",function(){l(".tooltip").hide(),e.onclick&&!t.disabled&&e.onclick()}).tooltip({title:e.tooltip,placement:"bottom"}),this.$progress.addClass("progress").css("display",e.percentage!==-1?"block":"none"),this.$progress_bar.addClass("progress-bar").css({width:e.percentage+"%"}),this.$icon.removeClass().addClass("icon fa"),this.$title.removeClass().addClass("title"),e.wait?(this.$el.addClass(e.wait_cls).prop("disabled",!0),this.$icon.addClass("fa-spinner fa-spin ui-margin-right"),this.$title.html(e.wait_text)):(this.$el.addClass(e.cls),this.$icon.addClass(e.icon),this.$title.html(e.title),e.icon&&e.title&&this.$icon.addClass("ui-margin-right"))},show:function(){this.$el.show()},hide:function(){this.$el.hide()},disable:function(){this.model.set("disabled",!0)},enable:function(){this.model.set("disabled",!1)},wait:function(){this.model.set("wait",!0)},unwait:function(){this.model.set("wait",!1)},setIcon:function(t){this.model.set("icon",t)}}),i=e.extend({initialize:function(e){this.model=e&&e.model||new n.Model({id:t.uid(),title:"",icon:"",cls:""}).set(e),this.setElement(l("").append(this.$icon=l(""))),this.listenTo(this.model,"change",this.render,this),this.render()},render:function(){var t=this.model.attributes;this.$el.removeClass().addClass(t.cls).attr({id:t.id,href:t.href||"javascript:void(0)",title:t.title,target:t.target||"_top",disabled:t.disabled}).tooltip({placement:"bottom"}).off("click").on("click",function(){t.onclick&&!t.disabled&&t.onclick()}),this.$icon.removeClass().addClass(t.icon)}}),a=n.View.extend({initialize:function(e){this.model=e&&e.model||new n.Model({id:t.uid(),title:"Select/Unselect all",icons:["fa-square-o","fa-minus-square-o","fa-check-square-o"],value:0,onchange:function(){}}).set(e),this.setElement(l("").append(this.$icon=l("")).append(this.$title=l(""))),this.listenTo(this.model,"change",this.render,this),this.render()},render:function(t){var e=this,t=this.model.attributes;this.$el.addClass("ui-button-check").off("click").on("click",function(){e.model.set("value",0===e.model.get("value")&&2||0),t.onclick&&t.onclick()}),this.$title.html(t.title),this.$icon.removeClass().addClass("icon fa ui-margin-right").addClass(t.icons[t.value])},value:function(t,e){return void 0!==t&&(e&&0!==t&&(t=t!==e&&1||2),this.model.set("value",t),this.model.get("onchange")(this.model.get("value"))),this.model.get("value")}}),s=e.extend({initialize:function(e){this.model=e&&e.model||new n.Model({id:t.uid(),title:"",icon:"",cls:"ui-button-icon",disabled:!1}).set(e),this.setElement(l("").append(this.$button=l("").append(this.$icon=l("")).append(this.$title=l("")))),this.listenTo(this.model,"change",this.render,this),this.render()},render:function(t){var t=this.model.attributes;this.$el.removeClass().addClass(t.cls).addClass(t.disabled&&"disabled").attr("disabled",t.disabled).attr("id",t.id).off("click").on("click",function(){l(".tooltip").hide(),!t.disabled&&t.onclick&&t.onclick()}),this.$button.addClass("button").tooltip({title:t.tooltip,placement:"bottom"}),this.$icon.removeClass().addClass("icon fa").addClass(t.icon),this.$title.addClass("title").html(t.title),t.icon&&t.title&&this.$icon.addClass("ui-margin-right")}}),o=e.extend({$menu:null,initialize:function(t){this.model=t&&t.model||new n.Model({id:"",title:"",pull:"right",icon:null,onclick:null,cls:"ui-button-icon ui-button-menu",tooltip:"",target:"",href:"",onunload:null,visible:!0,tag:""}).set(t),this.collection=new n.Collection,this.setElement(l("").append(this.$root=l("").append(this.$icon=l("")).append(this.$title=l("")))),this.listenTo(this.model,"change",this.render,this),this.listenTo(this.collection,"change add remove reset",this.render,this),this.render()},render:function(){var t=this,e=this.model.attributes;this.$el.removeClass().addClass("dropdown").addClass(e.cls).attr("id",e.id).css({display:e.visible&&this.collection.where({visible:!0}).length>0?"block":"none"}),this.$root.addClass("root button dropdown-toggle").attr("data-toggle","dropdown").tooltip({title:e.tooltip,placement:"bottom"}).off("click").on("click",function(t){l(".tooltip").hide(),t.preventDefault(),e.onclick&&e.onclick()}),this.$icon.removeClass().addClass("icon fa").addClass(e.icon),this.$title.removeClass().addClass("title").html(e.title),e.icon&&e.title&&this.$icon.addClass("ui-margin-right"),this.$menu&&this.$menu.remove(),this.collection.length>0&&(this.$menu=l("'+n(t.title)+"
",'',"'+t.name+"
"}});return{View:a}}.apply(e,a),!(void 0!==s&&(t.exports=s))}).call(e,i(2),i(1))},function(t,e,i){var a,s;(function(n,l,o){a=[i(4),i(11)],s=function(t,e){var i=n.View.extend({initialize:function(e){var i=this;this.model=e&&e.model||new n.Model({visible:!0,data:[],id:t.uid(),error_text:"No options available.",wait_text:"Please wait...",multiple:!1,optional:!1,onchange:function(){}}).set(e),this.listenTo(this.model,"change:value",this._changeValue,this),this.listenTo(this.model,"change:wait",this._changeWait,this),this.listenTo(this.model,"change:data",this._changeData,this),this.listenTo(this.model,"change:visible",this._changeVisible,this),this.on("change",function(){i.model.get("onchange")(i.value())}),this.render()},render:function(){var t=this;this.$el.empty().removeClass().addClass("ui-options").append(this.$message=l("")).append(this.$menu=l("").addClass("ui-options-menu")).append(this.$options=l(this._template())),this.all_button=null,this.model.get("multiple")&&(this.all_button=new e.ButtonCheck({onclick:function(){t.$("input").prop("checked",0!==t.all_button.value()),t.value(t._getValue()),t.trigger("change")}}),this.$menu.append(this.all_button.$el)),this._changeData(),this._changeWait(),this._changeVisible()},update:function(t){this.model.set("data",t)},_changeData:function(){var t=this;this.$options.empty(),this._templateOptions?this.$options.append(this._templateOptions(this.model.get("data"))):o.each(this.model.get("data"),function(e){t.$options.append(l(t._templateOption(e)).addClass("ui-option").tooltip({title:e.tooltip,placement:"bottom"}))});var t=this;this.$("input").on("change",function(){t.value(t._getValue()),t.trigger("change")}),this._changeValue(),this._changeWait()},_changeVisible:function(){this.$el[this.model.get("visible")?"show":"hide"]()},_changeWait:function(){this.model.get("wait")?0===this.length()&&(this._messageShow(this.model.get("wait_text"),"info"),
+this.$options.hide(),this.$menu.hide()):0===this.length()?(this._messageShow(this.model.get("error_text"),"danger"),this.$options.hide(),this.$menu.hide()):(this.$message.hide(),this.$options.css("display","inline-block"),this.$menu.show())},_changeValue:function(){this._setValue(this.model.get("value")),null!==this._getValue()||this.model.get("multiple")||this.model.get("optional")||this._setValue(this.first()),this.all_button&&this.all_button.value(l.isArray(this._getValue())?this._getValue().length:0,this.length())},value:function(t){return void 0!==t&&this.model.set("value",t),this._getValue()},first:function(){var t=this.$("input").first();return t.length>0?t.val():null},wait:function(){this.model.set("wait",!0)},unwait:function(){this.model.set("wait",!1)},length:function(){return this.$(".ui-option").length},_setValue:function(t){var e=this;if(void 0!==t&&(this.$("input").prop("checked",!1),null!==t)){var i=l.isArray(t)?t:[t];o.each(i,function(t){e.$('input[value="'+t+'"]').first().prop("checked",!0)})}},_getValue:function(){var e=[];return this.$(":checked").each(function(){e.push(l(this).val())}),t.isEmpty(e)?null:this.model.get("multiple")?e:e[0]},_messageShow:function(t,e){this.$message.show().removeClass().addClass("ui-message alert alert-"+e).html(t)},_template:function(){return l("").addClass("ui-options-list")}}),a=i.extend({_templateOption:function(e){var i=t.uid();return l("").addClass("ui-option").append(l("").attr({id:i,type:this.model.get("type"),name:this.model.id,value:e.value})).append(l("").addClass("ui-options-label").attr("for",i).html(e.label))}}),s={};s.View=a.extend({initialize:function(t){t.type="radio",a.prototype.initialize.call(this,t)}});var r={};r.View=a.extend({initialize:function(t){t.type="checkbox",t.multiple=!0,a.prototype.initialize.call(this,t)}});var d={};return d.View=i.extend({initialize:function(t){i.prototype.initialize.call(this,t)},_setValue:function(t){void 0!==t&&(this.$("input").prop("checked",!1),this.$("label").removeClass("active"),this.$('[value="'+t+'"]').prop("checked",!0).closest("label").addClass("active"))},_templateOption:function(t){var e=l("").addClass("btn btn-default");return t.icon&&e.append(l("").addClass("fa").addClass(t.icon).addClass(!t.label&&"no-padding")),e.append(l("").attr({type:"radio",name:this.model.id,value:t.value})),t.label&&e.append(t.label),e},_template:function(){return l("").addClass("btn-group ui-radiobutton").attr("data-toggle","buttons")}}),{Base:i,BaseIcons:a,Radio:s,RadioButton:d,Checkbox:r}}.apply(e,a),!(void 0!==s&&(t.exports=s))}).call(e,i(2),i(1),i(3))},function(t,e,i){var a,s;(function(n,l,o){a=[i(4),i(11)],s=function(t,e){var i=n.View.extend({initialize:function(e){var i=this;this.data=[],this.data2=[],this.model=e&&e.model||new n.Model({id:t.uid(),cls:"ui-select",error_text:"No options available",empty_text:"Nothing selected",visible:!0,wait:!1,multiple:!1,searchable:!0,optional:!1,disabled:!1,onchange:function(){},value:null,selectall:!0,pagesize:20}).set(e),this.on("change",function(){i.model.get("onchange")&&i.model.get("onchange")(i.value())}),this.listenTo(this.model,"change:data",this._changeData,this),this.listenTo(this.model,"change:disabled",this._changeDisabled,this),this.listenTo(this.model,"change:wait",this._changeWait,this),this.listenTo(this.model,"change:visible",this._changeVisible,this),this.listenTo(this.model,"change:value",this._changeValue,this),this.listenTo(this.model,"change:multiple change:searchable change:cls change:id",this.render,this),this.render()},render:function(){var t=this;this.model.get("searchable")?this._renderSearchable():this._renderClassic(),this.$el.addClass(this.model.get("cls")).attr("id",this.model.get("id")),this.$select.empty().addClass("select").attr("id",this.model.get("id")+"_select").prop("multiple",this.model.get("multiple")).on("change",function(){t.value(t._getValue()),t.trigger("change")}),this._changeData(),this._changeWait(),this._changeVisible(),this._changeDisabled()},_renderClassic:function(){var t=this;this.$el.addClass(this.model.get("multiple")?"ui-select-multiple":"ui-select").append(this.$select=l("")).append(this.$dropdown=l("")).append(this.$resize=l("").append(this.$resize_icon=l(""))),this.model.get("multiple")?(this.$dropdown.hide(),this.$resize_icon.addClass("fa fa-angle-double-right fa-rotate-45").show(),this.$resize.removeClass().addClass("icon-resize").show().off("mousedown").on("mousedown",function(e){var i=e.pageY,a=t.$select.height();t.minHeight=t.minHeight||a,l("#dd-helper").show().on("mousemove",function(e){t.$select.height(Math.max(a+(e.pageY-i),t.minHeight))}).on("mouseup mouseleave",function(){l("#dd-helper").hide().off()})})):(this.$dropdown.show(),this.$resize.hide(),this.$resize_icon.hide())},_renderSearchable:function(){var t=this;this.$el.append(this.$select=l("")).append(this.$dropdown=l("")),this.$dropdown.hide(),this.model.get("multiple")||this.$dropdown.show().on("click",function(){t.$select.select2&&t.$select.select2("open")}),this.all_button=null,this.model.get("multiple")&&this.model.get("selectall")&&(this.all_button=new e.ButtonCheck({onclick:function(){var e=[];0!==t.all_button.value()&&o.each(t.model.get("data"),function(t){e.push(t.value)}),t.value(e),t.trigger("change")}}),this.$el.prepend(this.all_button.$el))},_match:function(t,e){return!t||""==t||String(e).toUpperCase().indexOf(t.toUpperCase())>=0},_changeData:function(){var t=this;this.data=[],!this.model.get("multiple")&&this.model.get("optional")&&this.data.push({value:"__null__",label:t.model.get("empty_text")}),o.each(this.model.get("data"),function(e){t.data.push(e)}),0==this.length()&&this.data.push({value:"__null__",label:this.model.get("error_text")}),this.model.get("searchable")?(this.data2=[],o.each(this.data,function(e,i){t.data2.push({order:i,id:e.value,text:e.label,tags:e.tags})}),this.$select.data("select2")&&this.$select.select2("destroy"),this.matched_tags={},this.$select.select2({data:t.data2,closeOnSelect:!this.model.get("multiple"),multiple:this.model.get("multiple"),query:function(e){t.matched_tags={};var i=t.model.get("pagesize"),a=o.filter(t.data2,function(i){var a=!1;return o.each(i.tags,function(i){t._match(e.term,i)&&(a=t.matched_tags[i]=!0)}),a||t._match(e.term,i.text)});e.callback({results:a.slice((e.page-1)*i,e.page*i),more:a.length>=e.page*i})},formatResult:function(e){return o.escape(e.text)+'"}}),this.$(".select2-container .select2-search input").off("blur")):(this.$select.find("option").remove(),o.each(this.data,function(e){t.$select.append(l("").attr("value",e.value).html(o.escape(e.label)))})),this.model.set("disabled",0==this.length()),this._changeValue()},_changeDisabled:function(){this.model.get("searchable")?this.$select.select2(this.model.get("disabled")?"disable":"enable"):this.$select.prop("disabled",this.model.get("disabled"))},_changeWait:function(){this.$dropdown.removeClass().addClass("icon-dropdown fa").addClass(this.model.get("wait")?"fa-spinner fa-spin":"fa-caret-down")},_changeVisible:function(){this.$el[this.model.get("visible")?"show":"hide"](),this.$select[this.model.get("visible")?"show":"hide"]()},_changeValue:function(){if(this._setValue(this.model.get("value")),this.model.get("multiple")){if(this.all_button){var t=this._getValue();this.all_button.value(l.isArray(t)?t.length:0,this.length())}}else null!==this._getValue()||this.model.get("optional")||this._setValue(this.first())},value:function(t){return void 0!==t&&this.model.set("value",t),this._getValue()},first:function(){return this.data.length>0?this.data[0].value:null},exists:function(t){return o.findWhere(this.data,{value:t})},text:function(){var t=this._getValue(),e=this.exists(l.isArray(t)?t[0]:t);return e?e.label:""},show:function(){this.model.set("visible",!0)},hide:function(){this.model.set("visible",!1)},wait:function(){this.model.set("wait",!0)},unwait:function(){this.model.set("wait",!1)},disabled:function(){return this.model.get("disabled")},enable:function(){this.model.set("disabled",!1)},disable:function(){this.model.set("disabled",!0)},add:function(t,e){o.each(this.model.get("data"),function(e){e.keep&&!o.findWhere(t,{value:e.value})&&t.push(e)}),e&&t&&t.sort(e),this.model.set("data",t)},update:function(t){this.model.set("data",t)},setOnChange:function(t){this.model.set("onchange",t)},length:function(){return l.isArray(this.model.get("data"))?this.model.get("data").length:0},_setValue:function(t){var e=this;if(null!==t&&void 0!==t||(t="__null__"),this.model.get("multiple")?t=l.isArray(t)?t:[t]:l.isArray(t)&&(t=t.length>0?t[0]:"__null__"),this.model.get("searchable")){if(l.isArray(t))val=[],o.each(t,function(t){var i=o.findWhere(e.data2,{id:t});i&&val.push(i)}),t=val;else{var i=o.findWhere(this.data2,{id:t});t=i}this.$select.select2("data",t)}else this.$select.val(t)},_getValue:function(){var e=null;if(this.model.get("searchable")){var i=this.$select.select2("data");i&&(l.isArray(i)?(e=[],i.sort(function(t,e){return t.order-e.order}),o.each(i,function(t){e.push(t.id)})):e=i.id)}else e=this.$select.val();return t.isEmpty(e)?null:e}});return{View:i}}.apply(e,a),!(void 0!==s&&(t.exports=s))}).call(e,i(2),i(1),i(3))},,,function(t,e,i){var a,s;(function(i,n,l,o){a=[],s=function(){var t=i.View.extend({initialize:function(t,e){this.$button=t,this.$button.length||(this.$button=n("")),this.options=e||[],this.$button.data("popupmenu",this);var i=this;this.$button.click(function(t){return n(".popmenu-wrapper").remove(),i._renderAndShow(t),!1})},_renderAndShow:function(t){this.render(),this.$el.appendTo("body").css(this._getShownPosition(t)).show(),this._setUpCloseBehavior()},render:function(){if(this.$el.addClass("popmenu-wrapper").hide().css({position:"absolute"}).html(this.template(this.$button.attr("id"),this.options)),this.options.length){var t=this;this.$el.find("li").each(function(e,i){var a=t.options[e];a.func&&n(this).children("a.popupmenu-option").click(function(e){a.func.call(t,e,a),e.preventDefault()})})}return this},template:function(t,e){return['"].join("")},_templateOptions:function(t){return t.length?l.map(t,function(t){if(t.divider)return'';if(t.header)return['"}});return{View:e}}.apply(e,a),!(void 0!==s&&(t.exports=s))}).call(e,i(2),i(1))},,,,,,function(t,e,i){var a,s;(function(i,n,l){a=[],s=function(){return i.View.extend({initialize:function(t,e){this.app=t,this.app_options=t.model?t.model.attributes:{},this.field=e&&e.field||new i.View,this.model=e&&e.model||new i.Model({text_enable:this.app_options.text_enable||"Enable",text_disable:this.app_options.text_disable||"Disable",cls_enable:this.app_options.cls_enable||"fa fa-caret-square-o-down",cls_disable:this.app_options.cls_disable||"fa fa-caret-square-o-up",always_refresh:this.app_options.always_refresh}).set(e),this.setElement(this._template()),this.$field=this.$(".ui-form-field"),this.$info=this.$(".ui-form-info"),this.$preview=this.$(".ui-form-preview"),this.$collapsible=this.$(".ui-form-collapsible"),this.$collapsible_text=this.$(".ui-form-collapsible-text"),this.$collapsible_icon=this.$(".ui-form-collapsible-icon"),this.$title=this.$(".ui-form-title"),this.$title_text=this.$(".ui-form-title-text"),this.$error_text=this.$(".ui-form-error-text"),this.$error=this.$(".ui-form-error"),this.$backdrop=this.$(".ui-form-backdrop"),this.$field.prepend(this.field.$el);var a=this.model.get("collapsible_value");this.field.collapsed=void 0!==a&&JSON.stringify(this.model.get("value"))==JSON.stringify(a),this.listenTo(this.model,"change",this.render,this),this.render();var s=this;this.$collapsible.on("click",function(){s.field.collapsed=!s.field.collapsed,t.trigger&&t.trigger("change"),s.render()}),this.field.model&&!this.model.get("always_refresh")&&this.listenTo(this.field.model,"change:value",function(){s.reset()})},backdrop:function(){this.model.set("backdrop",!0)},error:function(t){this.model.set("error_text",t)},reset:function(){!this.model.get("fixed")&&this.model.set("error_text",null)},render:function(){n(".tooltip").hide();var t=this.model.get("help",""),e=this.model.get("argument");e&&t.indexOf("("+e+")")==-1&&(t+=" ("+e+")"),this.$info.html(t),this.$el[this.model.get("hidden")?"hide":"show"](),this.$preview[this.field.collapsed&&this.model.get("collapsible_preview")||this.model.get("disabled")?"show":"hide"]().html(l.escape(this.model.get("text_value")));var i=this.model.get("error_text");if(this.$error[i?"show":"hide"](),this.$el[i?"addClass":"removeClass"]("ui-error"),this.$error_text.html(i),this.$backdrop[this.model.get("backdrop")?"show":"hide"](),this.field.collapsed||this.model.get("disabled")?this.$field.hide():this.$field.show(),this.field.model&&this.field.model.set({color:this.model.get("color"),style:this.model.get("style")}),this.model.get("disabled")||void 0===this.model.get("collapsible_value"))this.$title_text.show().text(this.model.get("label")),this.$collapsible.hide();else{var a=this.field.collapsed?"enable":"disable";this.$title_text.hide(),this.$collapsible.show(),this.$collapsible_text.text(this.model.get("label")),this.$collapsible_icon.removeClass().addClass("icon").addClass(this.model.get("cls_"+a)).attr("data-original-title",this.model.get("text_"+a)).tooltip({placement:"bottom"})}},_template:function(){return n("").addClass("ui-form-element").append(n("").addClass("ui-form-error ui-error").append(n("").addClass("fa fa-arrow-down")).append(n("").addClass("ui-form-error-text"))).append(n("").addClass("ui-form-title").append(n("").addClass("ui-form-collapsible").append(n("").addClass("ui-form-collapsible-icon")).append(n("").addClass("ui-form-collapsible-text"))).append(n("").addClass("ui-form-title-text"))).append(n("").addClass("ui-form-field").append(n("").addClass("ui-form-info")).append(n("").addClass("ui-form-backdrop"))).append(n("").addClass("ui-form-preview"))}})}.apply(e,a),!(void 0!==s&&(t.exports=s))}).call(e,i(2),i(1),i(3))},function(t,e,i){var a,s;(function(n,l,o){a=[i(4),i(5),i(37),i(39),i(38),i(35)],s=function(t,e,i,a,s,r){return n.Model.extend({types:{text:"_fieldText",password:"_fieldText",select:"_fieldSelect",data_column:"_fieldSelect",genomebuild:"_fieldSelect",data:"_fieldData",data_collection:"_fieldData",integer:"_fieldSlider",float:"_fieldSlider",boolean:"_fieldBoolean",drill_down:"_fieldDrilldown",color:"_fieldColor",hidden:"_fieldHidden",hidden_data:"_fieldHidden",baseurl:"_fieldHidden",library_data:"_fieldLibrary",ftpfile:"_fieldFtp",upload:"_fieldUpload"},create:function(t){var e=this.types[t.type],i="function"==typeof this[e]?this[e].call(this,t):null;return i||(i=t.options?this._fieldSelect(t):this._fieldText(t),Galaxy.emit.debug("form-parameters::_addRow()","Auto matched field type ("+t.type+").")),void 0===t.value&&(t.value=null),i.value(t.value),i},_fieldData:function(t){return new i.View({id:"field-"+t.id,extensions:t.extensions,optional:t.optional,multiple:t.multiple,type:t.type,flavor:t.flavor,data:t.options,onchange:t.onchange})},_fieldSelect:function(t){if(t.is_workflow)return this._fieldText(t);"data_column"==t.type&&(t.error_text="Missing columns in referenced dataset.");var i=t.data;i||(i=[],l.each(t.options,function(t){i.push({label:t[0],value:t[1]})}));var a=e.Select;switch(t.display){case"checkboxes":a=e.Checkbox;break;case"radio":a=e.Radio;break;case"radiobutton":a=e.RadioButton}return new a.View({id:"field-"+t.id,data:i,error_text:t.error_text||"No options available",multiple:t.multiple,optional:t.optional,onchange:t.onchange,searchable:"workflow"!==t.flavor})},_fieldDrilldown:function(t){return t.is_workflow?this._fieldText(t):new e.Drilldown.View({id:"field-"+t.id,data:t.options,display:t.display,optional:t.optional,onchange:t.onchange})},_fieldText:function(i){if(i.options&&i.data)if(i.area=i.multiple,t.isEmpty(i.value))i.value=null;else if(o.isArray(i.value)){var a="";for(var s in i.value){if(a+=String(i.value[s]),!i.multiple)break;a+="\n"}i.value=a}return new e.Input({id:"field-"+i.id,type:i.type,area:i.area,readonly:i.readonly,placeholder:i.placeholder,datalist:i.datalist,onchange:i.onchange})},_fieldSlider:function(t){return new e.Slider.View({id:"field-"+t.id,precise:"float"==t.type,is_workflow:t.is_workflow,min:t.min,max:t.max,onchange:t.onchange})},_fieldHidden:function(t){return new e.Hidden({id:"field-"+t.id,info:t.info})},_fieldBoolean:function(t){return new e.RadioButton.View({id:"field-"+t.id,data:[{label:"Yes",value:"true"},{label:"No",value:"false"}],onchange:t.onchange})},_fieldColor:function(t){return new r({id:"field-"+t.id,onchange:t.onchange})},_fieldLibrary:function(t){return new a.View({id:"field-"+t.id,optional:t.optional,multiple:t.multiple,onchange:t.onchange})},_fieldFtp:function(t){return new s.View({id:"field-"+t.id,optional:t.optional,multiple:t.multiple,onchange:t.onchange})},_fieldUpload:function(t){return new e.Upload({id:"field-"+t.id,onchange:t.onchange})}})}.apply(e,a),!(void 0!==s&&(t.exports=s))}).call(e,i(2),i(3),i(1))},function(t,e,i){var a,s;(function(n,l,o){a=[i(4),i(9),i(5)],s=function(t,e,i){var a=n.View.extend({initialize:function(e){this.list={},this.options=t.merge(e,{title:"Repeat",empty_text:"Not available.",max:null,min:null}),this.button_new=new i.ButtonIcon({icon:"fa-plus",title:"Insert "+this.options.title,tooltip:"Add new "+this.options.title+" block",cls:"ui-button-icon ui-clear-float form-repeat-add",onclick:function(){e.onnew&&e.onnew()}}),this.setElement(l("").append(this.$list=l("")).append(l("").append(this.button_new.$el)))},size:function(){return o.size(this.list)},add:function(t){if(!t.id||this.list[t.id])return void Galaxy.emit.debug("form-repeat::add()","Duplicate or invalid repeat block id.");var a=new i.ButtonIcon({icon:"fa-trash-o",tooltip:"Delete this repeat block",cls:"ui-button-icon-plain form-repeat-delete",onclick:function(){t.ondel&&t.ondel()}}),s=new e.View({id:t.id,title:"placeholder",cls:t.cls||"ui-portlet-repeat",operations:{button_delete:a}});s.append(t.$el),s.$el.addClass("section-row").hide(),this.list[t.id]=s,this.$list.append(s.$el.fadeIn("fast")),this.options.max>0&&this.size()>=this.options.max&&this.button_new.disable(),this._refresh()},del:function(t){return this.list[t]?(this.$list.find("#"+t).remove(),delete this.list[t],this.button_new.enable(),void this._refresh()):void Galaxy.emit.debug("form-repeat::del()","Invalid repeat block id.")},delAll:function(){for(var t in this.list)this.del(t)},hideOptions:function(){this.button_new.$el.hide(),o.each(this.list,function(t){t.hideOperation("button_delete")}),o.isEmpty(this.list)&&this.$el.append(l("").addClass("ui-form-info").html(this.options.empty_text))},_refresh:function(){var t=0;for(var e in this.list){var i=this.list[e];i.title(++t+": "+this.options.title),i[this.size()>this.options.min?"showOperation":"hideOperation"]("button_delete")}}});return{View:a}}.apply(e,a),!(void 0!==s&&(t.exports=s))}).call(e,i(2),i(1),i(3))},function(t,e,i){var a,s;(function(n,l,o,r){a=[i(4),i(5),i(9),i(31),i(29),i(30)],s=function(t,e,i,a,s,d){var c=n.View.extend({initialize:function(t,e){this.app=t,this.inputs=e.inputs,this.parameters=new d,this.setElement(l("")),this.render()},render:function(){var t=this;this.$el.empty(),o.each(this.inputs,function(e){t.add(e)})},add:function(e){var i=r.extend(!0,{},e);switch(i.id=e.id=t.uid(),this.app.input_list[i.id]=i,i.type){case"conditional":this._addConditional(i);break;case"repeat":this._addRepeat(i);break;case"section":this._addSection(i);break;default:this._addRow(i)}},_addConditional:function(t){var e=this;t.test_param.id=t.id,this.app.model.get("sustain_conditionals")&&(t.test_param.disabled=!0);var i=this._addRow(t.test_param);i.model&&i.model.set("onchange",function(i){var a=e.app.data.matchCase(t,i);for(var s in t.cases){var n=t.cases[s],l=e.$("#"+t.id+"-section-"+s),o=!1;for(var r in n.inputs)if(!n.inputs[r].hidden){o=!0;break}s==a&&o?l.fadeIn("fast"):l.hide()}e.app.trigger("change")});for(var a in t.cases){var s=new c(this.app,{inputs:t.cases[a].inputs});this._append(s.$el.addClass("ui-form-section"),t.id+"-section-"+a)}i.trigger("change")},_addRepeat:function(t){function e(e){var a=t.id+"-section-"+n++,s=new c(i.app,{inputs:e});l.add({id:a,$el:s.$el,ondel:function(){l.del(a),i.app.trigger("change")}})}for(var i=this,n=0,l=new a.View({title:t.title||"Repeat",min:t.min,max:t.max,onnew:function(){e(t.inputs),i.app.trigger("change")}}),r=o.size(t.cache),d=0;d
'+this.grid_table(t),t.info_text&&(e+='
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",h+='
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It is assumed that\n\t // this element has a single child, a hyperlink/anchor with text.\n\t text = $(this).children().text();\n\t $(this).empty();\n\t $(this).addClass('inactive-link');\n\t $(this).text(text);\n\t } else if (page_num === cur_page) {\n\t // Add hyperlink to this page since grid will no longer be on this page. 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If operation cannot be performed asynchronously, redirect to location.\n\t if (target == 'top') {\n\t window.top.location = href + '?' + $.param(this.grid.get_url_data());\n\t } else if (this.grid.can_async_op(operation) || this.dict_format) {\n\t this.update_grid();\n\t } else {\n\t this.go_to(target, href);\n\t }\n\t\n\t // done\n\t return false;\n\t }\n\t\n\t // refresh grid\n\t if (href) {\n\t this.go_to(target, href);\n\t return false;\n\t }\n\t\n\t // refresh grid\n\t if (this.grid.get('async') || this.dict_format) {\n\t this.update_grid();\n\t } else {\n\t this.go_to(target, href);\n\t }\n\t\n\t // done\n\t return false;\n\t },\n\t\n\t // go to url\n\t go_to: function (target, href) {\n\t // get aysnc status\n\t var async = this.grid.get('async');\n\t this.grid.set('async', false);\n\t\n\t // get slide status\n\t advanced_search = this.$el.find('#advanced-search').is(':visible');\n\t this.grid.set('advanced_search', advanced_search);\n\t\n\t // get default url\n\t if (!href) {\n\t href = this.grid.get('url_base') + '?' + $.param(this.grid.get_url_data());\n\t }\n\t\n\t // clear grid of transient request attributes.\n\t this.grid.set({\n\t operation: undefined,\n\t item_ids: undefined,\n\t async: async\n\t });\n\t switch (target) {\n\t case 'inbound':\n\t // this currently assumes that there is only a single grid shown at a time\n\t var $div = $('.grid-header').closest('.inbound');\n\t if ($div.length !== 0) {\n\t $div.load(href);\n\t return;\n\t }\n\t break;\n\t case 'top':\n\t window.top.location = href;\n\t break;\n\t default:\n\t window.location = href;\n\t }\n\t },\n\t\n\t // Update grid.\n\t update_grid: function () {\n\t // If there's an operation, do POST; otherwise, do GET.\n\t var method = this.grid.get('operation') ? 'POST' : 'GET';\n\t\n\t // Show overlay to indicate loading and prevent user actions.\n\t this.$el.find('.loading-elt-overlay').show();\n\t var self = this;\n\t $.ajax({\n\t type: method,\n\t url: self.grid.get('url_base'),\n\t data: self.grid.get_url_data(),\n\t error: function (response) {\n\t alert('Grid refresh failed');\n\t },\n\t success: function (response_text) {\n\t\n\t // backup\n\t var embedded = self.grid.get('embedded');\n\t var insert = self.grid.get('insert');\n\t\n\t // request new configuration\n\t var json = self.dict_format ? response_text : $.parseJSON(response_text);\n\t\n\t // update\n\t json.embedded = embedded;\n\t json.insert = insert;\n\t\n\t // Initialize new grid config\n\t self.init_grid(json);\n\t\n\t // Hide loading overlay.\n\t self.$el.find('.loading-elt-overlay').hide();\n\t },\n\t complete: function () {\n\t // Clear grid of transient request attributes.\n\t self.grid.set({\n\t operation: undefined,\n\t item_ids: undefined\n\t });\n\t }\n\t });\n\t 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this.multiple = options.multiple || false;\n\t\n\t // create message handler\n\t this.message = new Ui.Message();\n\t\n\t // create portlet\n\t this.portlet = new Portlet.View({ cls: 'ui-portlet-section' });\n\t\n\t // create select field containing the options which can be inserted into the list\n\t this.select = new Ui.Select.View({ optional: options.optional });\n\t\n\t // create insert new list element button\n\t this.button = new Ui.ButtonIcon({\n\t icon: 'fa fa-sign-in',\n\t tooltip: 'Insert new ' + this.name,\n\t onclick: function () {\n\t self.add({\n\t id: self.select.value(),\n\t name: self.select.text()\n\t });\n\t }\n\t });\n\t\n\t // build main element\n\t this.setElement(this._template(options));\n\t this.$('.ui-list-message').append(this.message.$el);\n\t this.$('.ui-list-portlet').append(this.portlet.$el);\n\t this.$('.ui-list-button').append(this.button.$el);\n\t this.$('.ui-list-select').append(this.select.$el);\n\t },\n\t\n\t /** Return/Set currently selected list elements */\n\t value: function (val) {\n\t // set new value\n\t if (val !== undefined) {\n\t this.portlet.empty();\n\t if ($.isArray(val)) {\n\t for (var i in val) {\n\t var v = val[i];\n\t var v_id = null;\n\t var v_name = null;\n\t if ($.type(v) != 'string') {\n\t v_id = v.id;\n\t v_name = v.name;\n\t } else {\n\t v_id = v_name = v;\n\t }\n\t if (v_id != null) {\n\t this.add({\n\t id: v_id,\n\t name: v_name\n\t });\n\t }\n\t }\n\t }\n\t this._refresh();\n\t }\n\t // get current value\n\t var lst = [];\n\t this.$('.ui-list-id').each(function () {\n\t lst.push({\n\t id: $(this).prop('id'),\n\t name: $(this).find('.ui-list-name').html()\n\t });\n\t });\n\t if (lst.length == 0) {\n\t return null;\n\t }\n\t return lst;\n\t },\n\t\n\t /** Add row */\n\t add: function (options) {\n\t var self = this;\n\t if (this.$('[id=\"' + options.id + '\"]').length === 0) {\n\t if (!Utils.isEmpty(options.id)) {\n\t var $el = $(this._templateRow({\n\t id: options.id,\n\t name: options.name\n\t }));\n\t 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Separate jobs will be triggered for each dataset selection."));this.$batch={linked:a.clone(),enabled:a.clone().append(l("").append(l("").addClass("ui-form-title").html("Batch options:")).append(this.button_product.$el)).append(l("").css("clear","both"))},this.$el.on("dragenter",function(t){this.lastenter=t.target,i.$el.addClass("ui-dragover")}).on("dragover",function(t){t.preventDefault()}).on("dragleave",function(t){this.lastenter===t.target&&i.$el.removeClass("ui-dragover")}).on("drop",function(t){i._handleDrop(t)}),this.history={},this.listenTo(this.model,"change:data",this._changeData,this),this.listenTo(this.model,"change:wait",this._changeWait,this),this.listenTo(this.model,"change:current",this._changeCurrent,this),this.listenTo(this.model,"change:value",this._changeValue,this),this.listenTo(this.model,"change:type change:optional change:multiple change:extensions",this._changeType,this),this.render(),this.on("change",function(){t.onchange&&t.onchange(i.value())})},render:function(){this._changeType(),this._changeValue(),this._changeWait()},wait:function(){this.model.set("wait",!0)},unwait:function(){this.model.set("wait",!1)},update:function(t){this.model.set("data",t)},value:function(t){void 0!==t&&this.model.set("value",t);var e=this.model.get("current");if(this.config[e]){var i=this.fields[e].value();if(null!==i&&(i=l.isArray(i)?i:[i],i.length>0)){var a=this._batch({values:[]});for(var s in i){var n=this.history[i[s]+"_"+this.config[e].src];if(!n)return Galaxy.emit.debug("ui-select-content::value()","Requested details not found for '"+i[s]+"'."),null;a.values.push(n)}return a.values.sort(function(t,e){return t.hid-e.hid}),a}}else Galaxy.emit.debug("ui-select-content::value()","Invalid value/source '"+t+"'.");return null},_changeCurrent:function(){var t=this;o.each(this.fields,function(e,i){t.model.get("current")==i?(e.$el.show(),o.each(t.$batch,function(e,a){e[t.config[i].batch==a?"show":"hide"]()}),t.button_type.value(i)):e.$el.hide()})},_changeType:function(){var a=this,n=(this.model.get("flavor")?this.model.get("flavor")+"_":"")+String(this.model.get("type"))+(this.model.get("multiple")?"_multiple":"");s[n]?this.config=s[n]:(this.config=s.data,Galaxy.emit.debug("ui-select-content::_changeType()","Invalid configuration/type id '"+n+"'."));var l=a.model.get("data"),r=t.textify(this.model.get("extensions")),d=this.model.get("src_labels");this.fields=[],this.button_data=[],o.each(this.config,function(t,e){a.button_data.push({value:e,icon:t.icon,tooltip:t.tooltip}),a.fields.push(new i.View({optional:a.model.get("optional"),multiple:t.multiple,searchable:!t.multiple||l&&l[t.src]&&l[t.src].length>a.model.get("pagelimit"),selectall:!1,error_text:"No "+(r?r+" ":"")+(d[t.src]||"content")+" available.",onchange:function(){a.trigger("change")}}))}),this.button_type=new e.RadioButton.View({value:this.model.get("current"),data:this.button_data,onchange:function(t){a.model.set("current",t),a.trigger("change")}}),this.$el.empty();var c=0;this.fields.length>1&&(this.$el.append(this.button_type.$el),c=Math.max(0,36*this.fields.length)+"px"),o.each(this.fields,function(t){a.$el.append(t.$el.css({"margin-left":c}))}),o.each(this.$batch,function(t,e){a.$el.append(t.css({"margin-left":c}))}),this.model.set("current",0),this._changeCurrent(),this._changeData()},_changeWait:function(){var t=this;o.each(this.fields,function(e){e[t.model.get("wait")?"wait":"unwait"]()})},_changeData:function(){var t=this.model.get("data"),e=this,i={};o.each(t,function(t,a){i[a]=[],o.each(t,function(t){i[a].push({hid:t.hid,keep:t.keep,label:t.hid+": "+t.name,value:t.id,tags:t.tags}),e.history[t.id+"_"+a]=t})}),o.each(this.config,function(t,a){i[t.src]&&e.fields[a].add(i[t.src],function(t,e){return e.hid-t.hid})})},_changeValue:function(){var t=this.model.get("value");if(t&&t.values&&t.values.length>0){var e=[];o.each(t.values,function(t){e.push(t.id)});for(var i=t.values[0].src,a=t.values.length>1,s=0;s
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diff --git a/static/scripts/bundled/admin.bundled.js.map b/static/scripts/bundled/admin.bundled.js.map
index 40a1ebd161f..55d7a9c9108 100644
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0 */\n/***/ function(module, exports, __webpack_require__) {\n\n\t/* WEBPACK VAR INJECTION */(function(_) {var jQuery = __webpack_require__(1),\n\t $ = jQuery,\n\t GalaxyApp = __webpack_require__(49).GalaxyApp,\n\t AdminPanel = __webpack_require__(100),\n\t FormWrapper = __webpack_require__(59),\n\t GridView = __webpack_require__(12),\n\t Ui = __webpack_require__(5),\n\t QueryStringParsing = __webpack_require__(26),\n\t Router = __webpack_require__(52),\n\t Page = __webpack_require__(50);\n\t\n\twindow.app = function app(options, bootstrapped) {\n\t window.Galaxy = new GalaxyApp(options, bootstrapped);\n\t Galaxy.debug('admin app');\n\t\n\t /** Routes */\n\t var AdminRouter = Router.extend({\n\t routes: {\n\t '(/)admin(/)users': 'show_users',\n\t '(/)admin(/)roles': 'show_roles',\n\t '(/)admin(/)groups': 'show_groups',\n\t '(/)admin(/)forms(/)(:form_id)': 'show_forms'\n\t },\n\t\n\t authenticate: function (args, name) {\n\t return Galaxy.user && Galaxy.user.id && Galaxy.user.get('is_admin');\n\t },\n\t\n\t show_users: function () {\n\t this.page.display(new GridView({ url_base: Galaxy.root + 'admin/users_list', url_data: Galaxy.params, dict_format: true }));\n\t },\n\t\n\t show_roles: function () {\n\t this.page.display(new GridView({ url_base: Galaxy.root + 'admin/roles_list', url_data: Galaxy.params, dict_format: true }));\n\t },\n\t\n\t show_groups: function () {\n\t this.page.display(new GridView({ url_base: Galaxy.root + 'admin/groups_list', url_data: Galaxy.params, dict_format: true }));\n\t },\n\t\n\t show_forms: function (form_id) {\n\t var form_defs = {\n\t reset_user_password: {\n\t title: 'Reset passwords',\n\t url: 'admin/reset_user_password?id=' + QueryStringParsing.get('id'),\n\t icon: 'fa-user',\n\t submit_title: 'Save new password',\n\t redirect: 'admin/users'\n\t },\n\t manage_roles_and_groups_for_user: {\n\t url: 'admin/manage_roles_and_groups_for_user?id=' + QueryStringParsing.get('id'),\n\t icon: 'fa-users',\n\t redirect: 'admin/users'\n\t },\n\t manage_users_and_groups_for_role: {\n\t url: 'admin/manage_users_and_groups_for_role?id=' + QueryStringParsing.get('id'),\n\t redirect: 'admin/roles'\n\t },\n\t manage_users_and_roles_for_group: {\n\t url: 'admin/manage_users_and_roles_for_group?id=' + QueryStringParsing.get('id'),\n\t redirect: 'admin/groups'\n\t },\n\t create_role: {\n\t url: 'admin/create_role?id=' + QueryStringParsing.get('id'),\n\t redirect: 'admin/roles'\n\t },\n\t create_group: {\n\t url: 'admin/create_group?id=' + QueryStringParsing.get('id'),\n\t redirect: 'admin/groups'\n\t },\n\t rename_role: {\n\t url: 'admin/rename_role?id=' + QueryStringParsing.get('id'),\n\t redirect: 'admin/roles'\n\t },\n\t rename_group: {\n\t url: 'admin/rename_group?id=' + QueryStringParsing.get('id'),\n\t redirect: 'admin/groups'\n\t }\n\t };\n\t this.page.display(new FormWrapper.View(form_defs[form_id]));\n\t }\n\t });\n\t\n\t $(function () {\n\t _.extend(options.config, { active_view: 'admin' });\n\t Galaxy.page = new Page.View(_.extend(options, {\n\t Left: AdminPanel,\n\t Router: AdminRouter\n\t }));\n\t });\n\t};\n\t/* WEBPACK VAR INJECTION */}.call(exports, __webpack_require__(3)))\n\n/***/ },\n/* 1 */,\n/* 2 */,\n/* 3 */,\n/* 4 */,\n/* 5 */\n/***/ function(module, exports, __webpack_require__) {\n\n\tvar __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;/* WEBPACK VAR INJECTION */(function(Backbone, $, _) {/**\n\t * This class contains backbone wrappers for basic ui elements such as Images, Labels, Buttons, Input fields etc.\n\t */\n\t!(__WEBPACK_AMD_DEFINE_ARRAY__ = [__webpack_require__(4), __webpack_require__(15), __webpack_require__(40), __webpack_require__(14), __webpack_require__(36), __webpack_require__(10), __webpack_require__(8)], __WEBPACK_AMD_DEFINE_RESULT__ = function (Utils, Select, Slider, Options, Drilldown, Buttons, Modal) {\n\t\n\t /** Label wrapper */\n\t var Label = Backbone.View.extend({\n\t tagName: 'label',\n\t initialize: function (options) {\n\t this.model = options && options.model || new Backbone.Model(options);\n\t this.tagName = options.tagName || this.tagName;\n\t this.setElement($('<' + this.tagName + '/>'));\n\t this.listenTo(this.model, 'change', this.render, this);\n\t this.render();\n\t },\n\t title: function (new_title) {\n\t this.model.set('title', new_title);\n\t },\n\t value: function () {\n\t return this.model.get('title');\n\t },\n\t render: function () {\n\t this.$el.removeClass().addClass('ui-label').addClass(this.model.get('cls')).html(this.model.get('title'));\n\t return this;\n\t }\n\t });\n\t\n\t /** Displays messages used e.g. in the tool form */\n\t var Message = Backbone.View.extend({\n\t initialize: function (options) {\n\t this.model = options && options.model || new Backbone.Model({\n\t message: null,\n\t status: 'info',\n\t cls: '',\n\t persistent: false,\n\t fade: true\n\t }).set(options);\n\t this.listenTo(this.model, 'change', this.render, this);\n\t this.render();\n\t },\n\t update: function (options) {\n\t this.model.set(options);\n\t },\n\t render: function () {\n\t this.$el.removeClass().addClass('ui-message').addClass(this.model.get('cls'));\n\t var status = this.model.get('status');\n\t if (this.model.get('large')) {\n\t this.$el.addClass((status == 'success' && 'done' || status == 'danger' && 'error' || status) + 'messagelarge');\n\t } else {\n\t this.$el.addClass('alert').addClass('alert-' + status);\n\t }\n\t if (this.model.get('message')) {\n\t this.$el.html(this.messageForDisplay());\n\t this.$el[this.model.get('fade') ? 'fadeIn' : 'show']();\n\t this.timeout && window.clearTimeout(this.timeout);\n\t if (!this.model.get('persistent')) {\n\t var self = this;\n\t this.timeout = window.setTimeout(function () {\n\t self.model.set('message', '');\n\t }, 3000);\n\t }\n\t } else {\n\t this.$el.fadeOut();\n\t }\n\t return this;\n\t },\n\t messageForDisplay: function () {\n\t return _.escape(this.model.get('message'));\n\t }\n\t });\n\t\n\t var UnescapedMessage = Message.extend({\n\t messageForDisplay: function () {\n\t return this.model.get('message');\n\t }\n\t });\n\t\n\t /** Renders an input element used e.g. in the tool form */\n\t var Input = Backbone.View.extend({\n\t initialize: function (options) {\n\t this.model = options && options.model || new Backbone.Model({\n\t type: 'text',\n\t placeholder: '',\n\t disabled: false,\n\t readonly: false,\n\t visible: true,\n\t cls: '',\n\t area: false,\n\t color: null,\n\t style: null\n\t }).set(options);\n\t this.tagName = this.model.get('area') ? 'textarea' : 'input';\n\t this.setElement($('<' + this.tagName + '/>'));\n\t this.listenTo(this.model, 'change', this.render, this);\n\t this.render();\n\t },\n\t events: {\n\t 'input': '_onchange'\n\t },\n\t value: function (new_val) {\n\t new_val !== undefined && this.model.set('value', typeof new_val === 'string' ? new_val : '');\n\t return this.model.get('value');\n\t },\n\t render: function () {\n\t var self = this;\n\t this.$el.removeClass().addClass('ui-' + this.tagName).addClass(this.model.get('cls')).addClass(this.model.get('style')).attr('id', this.model.id).attr('type', this.model.get('type')).attr('placeholder', this.model.get('placeholder')).css('color', this.model.get('color') || '').css('border-color', this.model.get('color') || '');\n\t var datalist = this.model.get('datalist');\n\t if ($.isArray(datalist) && datalist.length > 0) {\n\t this.$el.autocomplete({ source: function (request, response) {\n\t response(self.model.get('datalist'));\n\t },\n\t change: function () {\n\t self._onchange();\n\t } });\n\t }\n\t if (this.model.get('value') !== this.$el.val()) {\n\t this.$el.val(this.model.get('value'));\n\t }\n\t _.each(['readonly', 'disabled'], function (attr_name) {\n\t self.model.get(attr_name) ? self.$el.attr(attr_name, true) : self.$el.removeAttr(attr_name);\n\t });\n\t this.$el[this.model.get('visible') ? 'show' : 'hide']();\n\t return this;\n\t },\n\t _onchange: function () {\n\t this.value(this.$el.val());\n\t this.model.get('onchange') && this.model.get('onchange')(this.model.get('value'));\n\t }\n\t });\n\t\n\t /** Creates a hidden element input field used e.g. in the tool form */\n\t var Hidden = Backbone.View.extend({\n\t initialize: function (options) {\n\t this.model = options && options.model || new Backbone.Model(options);\n\t this.setElement($('').append(this.$info = $('')).append(this.$hidden = $('')));\n\t this.listenTo(this.model, 'change', this.render, this);\n\t this.render();\n\t },\n\t value: function (new_val) {\n\t new_val !== undefined && this.model.set('value', new_val);\n\t return this.model.get('value');\n\t },\n\t render: function () {\n\t this.$el.attr('id', this.model.id);\n\t this.$hidden.val(this.model.get('value'));\n\t this.model.get('info') ? this.$info.show().text(this.model.get('info')) : this.$info.hide();\n\t return this;\n\t }\n\t });\n\t\n\t /** Creates a upload element input field */\n\t var Upload = Backbone.View.extend({\n\t initialize: function (options) {\n\t var self = this;\n\t this.model = options && options.model || new Backbone.Model(options);\n\t this.setElement($('').append(this.$info = $('')).append(this.$file = $('').attr('type', 'file').addClass('ui-margin-bottom')).append(this.$text = $('').addClass('ui-textarea').attr('disabled', true)).append(this.$wait = $('').addClass('fa fa-spinner fa-spin')));\n\t this.listenTo(this.model, 'change', this.render, this);\n\t this.$file.on('change', function (e) {\n\t self._readFile(e);\n\t });\n\t this.render();\n\t },\n\t value: function (new_val) {\n\t new_val !== undefined && this.model.set('value', new_val);\n\t return this.model.get('value');\n\t },\n\t render: function () {\n\t this.$el.attr('id', this.model.id);\n\t this.model.get('info') ? this.$info.show().text(this.model.get('info')) : this.$info.hide();\n\t this.model.get('value') ? this.$text.text(this.model.get('value')).show() : this.$text.hide();\n\t this.model.get('wait') ? this.$wait.show() : this.$wait.hide();\n\t return this;\n\t },\n\t _readFile: function (e) {\n\t var self = this;\n\t var file = e.target.files && e.target.files[0];\n\t if (file) {\n\t var reader = new FileReader();\n\t reader.onload = function () {\n\t self.model.set({ wait: false, value: this.result });\n\t };\n\t this.model.set({ wait: true, value: null });\n\t reader.readAsText(file);\n\t }\n\t }\n\t });\n\t\n\t return {\n\t Button: Buttons.ButtonDefault,\n\t ButtonIcon: Buttons.ButtonIcon,\n\t ButtonCheck: Buttons.ButtonCheck,\n\t ButtonMenu: Buttons.ButtonMenu,\n\t ButtonLink: Buttons.ButtonLink,\n\t Input: Input,\n\t Label: Label,\n\t Message: Message,\n\t UnescapedMessage: UnescapedMessage,\n\t Upload: Upload,\n\t Modal: Modal,\n\t RadioButton: Options.RadioButton,\n\t Checkbox: Options.Checkbox,\n\t Radio: Options.Radio,\n\t Select: Select,\n\t Hidden: Hidden,\n\t Slider: Slider,\n\t Drilldown: Drilldown\n\t };\n\t}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));\n\t/* WEBPACK VAR INJECTION */}.call(exports, __webpack_require__(2), __webpack_require__(1), __webpack_require__(3)))\n\n/***/ },\n/* 6 */,\n/* 7 */,\n/* 8 */,\n/* 9 */\n/***/ function(module, exports, __webpack_require__) {\n\n\tvar __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;/* WEBPACK VAR INJECTION */(function(Backbone, _, $) {!(__WEBPACK_AMD_DEFINE_ARRAY__ = [__webpack_require__(4), __webpack_require__(5)], __WEBPACK_AMD_DEFINE_RESULT__ = function (Utils, Ui) {\n\t var View = Backbone.View.extend({\n\t visible: false,\n\t initialize: function (options) {\n\t var self = this;\n\t this.model = options && options.model || new Backbone.Model({\n\t id: Utils.uid(),\n\t cls: 'ui-portlet',\n\t title: '',\n\t icon: '',\n\t buttons: null,\n\t body: null,\n\t scrollable: true,\n\t nopadding: false,\n\t operations: null,\n\t collapsible: false,\n\t collapsible_button: false,\n\t collapsed: false,\n\t onchange_title: null\n\t }).set(options);\n\t this.setElement(this._template());\n\t\n\t // link all dom elements\n\t this.$body = this.$('.portlet-body');\n\t this.$title_text = this.$('.portlet-title-text');\n\t this.$title_icon = this.$('.portlet-title-icon');\n\t this.$header = this.$('.portlet-header');\n\t this.$content = this.$('.portlet-content');\n\t this.$backdrop = this.$('.portlet-backdrop');\n\t this.$buttons = this.$('.portlet-buttons');\n\t this.$operations = this.$('.portlet-operations');\n\t\n\t // add body to component list\n\t this.model.get('body') && this.append(this.model.get('body'));\n\t\n\t // add icon for collapsible option\n\t this.collapsible_button = new Ui.ButtonIcon({\n\t icon: 'fa-eye',\n\t tooltip: 'Collapse/Expand',\n\t cls: 'ui-button-icon-plain',\n\t onclick: function () {\n\t self[self.collapsed ? 'expand' : 'collapse']();\n\t }\n\t });\n\t this.render();\n\t },\n\t\n\t render: function () {\n\t var self = this;\n\t var options = this.model.attributes;\n\t this.$el.removeClass().addClass(options.cls).attr('id', options.id);\n\t this.$header[options.title ? 'show' : 'hide']();\n\t this.$title_text.html(options.title);\n\t _.each([this.$content, this.$body], function ($el) {\n\t $el[options.nopadding ? 'addClass' : 'removeClass']('no-padding');\n\t });\n\t\n\t // render title icon\n\t if (options.icon) {\n\t this.$title_icon.removeClass().addClass('portlet-title-icon fa').addClass(options.icon).show();\n\t } else {\n\t this.$title_icon.hide();\n\t }\n\t\n\t // make portlet collapsible\n\t this.$title_text[options.collapsible ? 'addClass' : 'removeClass']('no-highlight collapsible').off();\n\t if (options.collapsible) {\n\t this.$title_text.on('click', function () {\n\t self[self.collapsed ? 'expand' : 'collapse']();\n\t });\n\t options.collapsed ? this.collapse() : this.expand();\n\t }\n\t\n\t // allow title editing\n\t this.$title_text.prop('disabled', !options.onchange_title);\n\t options.onchange_title && this.$title_text.make_text_editable({\n\t on_finish: function (new_title) {\n\t options.onchange_title(new_title);\n\t }\n\t });\n\t\n\t // render buttons\n\t if (options.buttons) {\n\t this.$buttons.empty().show();\n\t $.each(this.model.get('buttons'), function (name, item) {\n\t item.$el.prop('id', name);\n\t self.$buttons.append(item.$el);\n\t });\n\t } else {\n\t this.$buttons.hide();\n\t }\n\t\n\t // render operations\n\t this.$operations.empty;\n\t if (options.collapsible_button) {\n\t this.$operations.append(this.collapsible_button.$el);\n\t }\n\t if (options.operations) {\n\t $.each(options.operations, function (name, item) {\n\t item.$el.prop('id', name);\n\t self.$operations.append(item.$el);\n\t });\n\t }\n\t return this;\n\t },\n\t\n\t /** Append new doms to body */\n\t append: function ($el) {\n\t this.$body.append($el);\n\t },\n\t\n\t /** Remove all content */\n\t empty: function () {\n\t this.$body.empty();\n\t },\n\t\n\t /** Return header element */\n\t header: function () {\n\t return this.$header;\n\t },\n\t\n\t /** Return body element */\n\t body: function () {\n\t return this.$body;\n\t },\n\t\n\t /** Show portlet */\n\t show: function () {\n\t this.visible = true;\n\t this.$el.fadeIn('fast');\n\t },\n\t\n\t /** Hide portlet */\n\t hide: function () {\n\t this.visible = false;\n\t this.$el.hide();\n\t },\n\t\n\t /** Enable a particular button */\n\t enableButton: function (id) {\n\t this.$buttons.find('#' + id).prop('disabled', false);\n\t },\n\t\n\t /** Disable a particular button */\n\t disableButton: function (id) {\n\t this.$buttons.find('#' + id).prop('disabled', true);\n\t },\n\t\n\t /** Hide a particular operation */\n\t hideOperation: function (id) {\n\t this.$operations.find('#' + id).hide();\n\t },\n\t\n\t /** Show a particular operation */\n\t showOperation: function (id) {\n\t this.$operations.find('#' + id).show();\n\t },\n\t\n\t /** Replaces the event callback of an existing operation */\n\t setOperation: function (id, callback) {\n\t this.$operations.find('#' + id).off('click').on('click', callback);\n\t },\n\t\n\t /** Change title */\n\t title: function (new_title) {\n\t new_title && this.$title_text.html(new_title);\n\t return this.$title_text.html();\n\t },\n\t\n\t /** Collapse portlet */\n\t collapse: function () {\n\t this.collapsed = true;\n\t this.$content.height('0%');\n\t this.$body.hide();\n\t this.collapsible_button.setIcon('fa-eye-slash');\n\t },\n\t\n\t /** Expand portlet */\n\t expand: function () {\n\t this.collapsed = false;\n\t this.$content.height('100%');\n\t this.$body.fadeIn('fast');\n\t this.collapsible_button.setIcon('fa-eye');\n\t },\n\t\n\t /** Disable content access */\n\t disable: function () {\n\t this.$backdrop.show();\n\t },\n\t\n\t /** Enable content access */\n\t enable: function () {\n\t this.$backdrop.hide();\n\t },\n\t\n\t _template: function () {\n\t return $('').append($('').addClass('portlet-header').append($('').addClass('portlet-operations')).append($('').addClass('portlet-title').append($('').addClass('portlet-title-icon')).append($('').addClass('portlet-title-text')))).append($('').addClass('portlet-content').append($('').addClass('portlet-body')).append($('').addClass('portlet-buttons'))).append($('').addClass('portlet-backdrop'));\n\t }\n\t });\n\t return {\n\t View: View\n\t };\n\t}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));\n\t/* WEBPACK VAR INJECTION */}.call(exports, __webpack_require__(2), __webpack_require__(3), __webpack_require__(1)))\n\n/***/ },\n/* 10 */\n/***/ function(module, exports, __webpack_require__) {\n\n\tvar __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;/* WEBPACK VAR INJECTION */(function(Backbone, $) {/** This module contains all button views. */\n\t!(__WEBPACK_AMD_DEFINE_ARRAY__ = [__webpack_require__(4)], __WEBPACK_AMD_DEFINE_RESULT__ = function (Utils) {\n\t /** This renders the default button which is used e.g. at the bottom of the upload modal. */\n\t var ButtonDefault = Backbone.View.extend({\n\t initialize: function (options) {\n\t this.model = options && options.model || new Backbone.Model({\n\t id: Utils.uid(),\n\t title: '',\n\t icon: '',\n\t cls: 'btn btn-default',\n\t wait: false,\n\t wait_text: 'Sending...',\n\t wait_cls: 'btn btn-info',\n\t disabled: false,\n\t percentage: -1\n\t }).set(options);\n\t this.setElement($('').attr('type', 'button').append(this.$icon = $('')).append(this.$title = $('')).append(this.$progress = $('').append(this.$progress_bar = $(''))));\n\t this.listenTo(this.model, 'change', this.render, this);\n\t this.render();\n\t },\n\t\n\t render: function () {\n\t var self = this;\n\t var options = this.model.attributes;\n\t this.$el.removeClass().addClass('ui-button-default').addClass(options.disabled && 'disabled').attr('id', options.id).attr('disabled', options.disabled).off('click').on('click', function () {\n\t $('.tooltip').hide();\n\t options.onclick && !self.disabled && options.onclick();\n\t }).tooltip({ title: options.tooltip, placement: 'bottom' });\n\t this.$progress.addClass('progress').css('display', options.percentage !== -1 ? 'block' : 'none');\n\t this.$progress_bar.addClass('progress-bar').css({ width: options.percentage + '%' });\n\t this.$icon.removeClass().addClass('icon fa');\n\t this.$title.removeClass().addClass('title');\n\t if (options.wait) {\n\t this.$el.addClass(options.wait_cls).prop('disabled', true);\n\t this.$icon.addClass('fa-spinner fa-spin ui-margin-right');\n\t this.$title.html(options.wait_text);\n\t } else {\n\t this.$el.addClass(options.cls);\n\t this.$icon.addClass(options.icon);\n\t this.$title.html(options.title);\n\t options.icon && options.title && this.$icon.addClass('ui-margin-right');\n\t }\n\t },\n\t\n\t /** Show button */\n\t show: function () {\n\t this.$el.show();\n\t },\n\t\n\t /** Hide button */\n\t hide: function () {\n\t this.$el.hide();\n\t },\n\t\n\t /** Disable button */\n\t disable: function () {\n\t this.model.set('disabled', true);\n\t },\n\t\n\t /** Enable button */\n\t enable: function () {\n\t this.model.set('disabled', false);\n\t },\n\t\n\t /** Show spinner to indicate that the button is not ready to be clicked */\n\t wait: function () {\n\t this.model.set('wait', true);\n\t },\n\t\n\t /** Hide spinner to indicate that the button is ready to be clicked */\n\t unwait: function () {\n\t this.model.set('wait', false);\n\t },\n\t\n\t /** Change icon */\n\t setIcon: function (icon) {\n\t this.model.set('icon', icon);\n\t }\n\t });\n\t\n\t /** This button allows the right-click/open-in-new-tab feature, its used e.g. for panel buttons. */\n\t var ButtonLink = ButtonDefault.extend({\n\t initialize: function (options) {\n\t this.model = options && options.model || new Backbone.Model({\n\t id: Utils.uid(),\n\t title: '',\n\t icon: '',\n\t cls: ''\n\t }).set(options);\n\t this.setElement($('').append(this.$icon = $('')));\n\t this.listenTo(this.model, 'change', this.render, this);\n\t this.render();\n\t },\n\t\n\t render: function () {\n\t var options = this.model.attributes;\n\t this.$el.removeClass().addClass(options.cls).attr({ id: options.id,\n\t href: options.href || 'javascript:void(0)',\n\t title: options.title,\n\t target: options.target || '_top',\n\t disabled: options.disabled }).tooltip({ placement: 'bottom' }).off('click').on('click', function () {\n\t options.onclick && !options.disabled && options.onclick();\n\t });\n\t this.$icon.removeClass().addClass(options.icon);\n\t }\n\t });\n\t\n\t /** The check button is used in the tool form and allows to distinguish between multiple states e.g. all, partially and nothing selected. */\n\t var ButtonCheck = Backbone.View.extend({\n\t initialize: function (options) {\n\t this.model = options && options.model || new Backbone.Model({\n\t id: Utils.uid(),\n\t title: 'Select/Unselect all',\n\t icons: ['fa-square-o', 'fa-minus-square-o', 'fa-check-square-o'],\n\t value: 0,\n\t onchange: function () {}\n\t }).set(options);\n\t this.setElement($('').append(this.$icon = $('')).append(this.$title = $('')));\n\t this.listenTo(this.model, 'change', this.render, this);\n\t this.render();\n\t },\n\t\n\t render: function (options) {\n\t var self = this;\n\t var options = this.model.attributes;\n\t this.$el.addClass('ui-button-check').off('click').on('click', function () {\n\t self.model.set('value', self.model.get('value') === 0 && 2 || 0);\n\t options.onclick && options.onclick();\n\t });\n\t this.$title.html(options.title);\n\t this.$icon.removeClass().addClass('icon fa ui-margin-right').addClass(options.icons[options.value]);\n\t },\n\t\n\t /* Sets a new value and/or returns the value.\n\t * @param{Integer} new_val - 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",''].join("")},toString:function(){return"PageLayoutView"},_checkCommunicationServerOnline:function(){var t=window.Galaxy.config.communication_server_host,e=window.Galaxy.config.communication_server_port,i=window.Galaxy.user.attributes.preferences,n=a("#show-chat-online");i&&["1","true"].indexOf(i.communication_server)!=-1?a.ajax({url:t+":"+e}).success(function(t){null!==window.Galaxy.user.id&&"hidden"===n.css("visibility")&&n.css("visibility","visible")}).error(function(t){n.css("visibility","hidden")}):n.css("visibility","hidden")}});return{View:n}}.apply(e,n),!(void 0!==s&&(t.exports=s))}).call(e,i(2),i(3),i(1))},function(t,e,i){var n,s;n=[i(1),i(3),i(2)],s=function(t,e,i){"use strict";var n=160,s=800,o=i.View.extend({initialize:function(t){this.view=t.view,this.hidden=!1,this.saved_size=null,this.hiddenByTool=!1},$center:function(){return this.$el.siblings("#center")},$toggleButton:function(){return this.$(".unified-panel-footer > .panel-collapse")},render:function(){var t=this,i=this.view,n=this.view.model.attributes||{};this.$el.html(this._templatePanel(this.id)),e.each(n.buttons,function(e){t.$(".panel-header-buttons").append(e.$el)}),this.$el.addClass(n.cls),this.$(".panel-header-text").html(e.escape(n.title)),this.$(".unified-panel-body").append(i.$el),i.render()},_templatePanel:function(){return[this._templateHeader(),this._templateBody(),this._templateFooter()].join("")},_templateHeader:function(t){return['','
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