diff --git a/client/galaxy/scripts/mvc/collection/list-collection-creator.js b/client/galaxy/scripts/mvc/collection/list-collection-creator.js index 4f04ae04f80..c1f69d12f61 100644 --- a/client/galaxy/scripts/mvc/collection/list-collection-creator.js +++ b/client/galaxy/scripts/mvc/collection/list-collection-creator.js @@ -9,6 +9,11 @@ define([ "ui/hoverhighlight" ], function( HDCA, STATES, BASE_MVC, UI_MODAL, naturalSort, _l ){ /*============================================================================== +TODO: + use proper Element model and not just json + straighten out createFn, collection.createHDCA + possibly stop using modals for this + It would be neat to do a drag and drop ==============================================================================*/ /** A view for both DatasetDCEs and NestedDCDCEs @@ -327,15 +332,7 @@ var ListCollectionCreator = Backbone.View.extend( BASE_MVC.LoggableMixin ).exten /** build and show an alert describing any elements that could not be included due to problems */ _invalidElementsAlert : function(){ - var message = _l( 'The following selections could not be included due to problems' ) + ':'; - message += ''; - this._showAlert( message, 'alert-warning' ); + this._showAlert( this.templates.invalidElements({ problems: this.invalidElements }), 'alert-warning' ); }, /** add (or clear if clear is truthy) a validation warning to the DOM element described in what */ @@ -445,12 +442,7 @@ var ListCollectionCreator = Backbone.View.extend( BASE_MVC.LoggableMixin ).exten /** render a message in the list that no elements remain to create a collection */ _renderNoElementsLeft : function(){ - var $message = $( '
  • ' ); - $message.html([ - _l( 'No elements left' ), '
    ', _l( 'Would you like to ' ), - '', _l( 'start over' ), '?' - ].join( '' )); - this.$( '.collection-elements' ).append( $message ); + this.$( '.collection-elements' ).append( this.templates.noElementsLeft() ); }, /** render a message in the list that no valid elements were found to create a collection */ @@ -782,7 +774,7 @@ var ListCollectionCreator = Backbone.View.extend( BASE_MVC.LoggableMixin ).exten main : _.template([ '
    ', '
    ', - '
    ' + '
    ' ].join('')), /** the header (not including help text) */ @@ -880,6 +872,14 @@ var ListCollectionCreator = Backbone.View.extend( BASE_MVC.LoggableMixin ).exten ].join( '' )), '

    ' ].join('')), + /** shown in list when all elements are discarded */ + invalidElements : _.template([ + _l( 'The following selections could not be included due to problems' ), + '' + ].join('')), + /** shown in list when all elements are discarded */ noElementsLeft : _.template([ '
  • ', diff --git a/client/galaxy/scripts/mvc/collection/pair-collection-creator.js b/client/galaxy/scripts/mvc/collection/pair-collection-creator.js index 6ce956c9bb9..8564ced2129 100644 --- a/client/galaxy/scripts/mvc/collection/pair-collection-creator.js +++ b/client/galaxy/scripts/mvc/collection/pair-collection-creator.js @@ -1,11 +1,15 @@ define([ "mvc/collection/list-collection-creator", "mvc/history/hdca-model", - "mvc/ui/error-modal", "mvc/base-mvc", "utils/localization" -], function( LIST_CREATOR, HDCA, errorModal, BASE_MVC, _l ){ +], function( LIST_CREATOR, HDCA, BASE_MVC, _l ){ /*============================================================================== +TODO: + the paired creator doesn't really mesh with the list creator as parent + it may be better to make an abstract super class for both + composites may inherit from this (or vis-versa) + PairedDatasetCollectionElementView doesn't make a lot of sense ==============================================================================*/ /** */ @@ -58,53 +62,75 @@ var PairCollectionCreator = _super.extend({ collectionClass : HDCA.HistoryPairDatasetCollection, className : 'pair-collection-creator collection-creator flex-row-container', - /** mangle duplicate names using a mac-like '(counter)' addition to any duplicates */ - _mangleDuplicateNames : function(){ + /** override to no-op */ + _mangleDuplicateNames : function(){}, + + // TODO: this whole pattern sucks. There needs to be two classes of problem area: + // bad inital choices and + // when the user has painted his/her self into a corner during creation/use-of-the-creator + /** render the entire interface */ + render : function( speed, callback ){ + var elementsLength = this.workingElements.length; + if( elementsLength === 2 ){ + return _super.prototype.render.call( this, speed, callback ); + } + return this._renderInvalid( speed, callback ); + }, + + /** render a simplified interface aimed at telling the user why they can't move forward */ + _renderInvalid : function( speed, callback ){ + //this.debug( '-- _render' ); + this.$el.empty().html( this.templates.invalidInitial({ + problems: this.invalidElements, + elements: this.workingElements, + })); + if( typeof this.oncancel === 'function' ){ + this.$( '.cancel-create.btn' ).show(); + } + this.trigger( 'rendered', this ); + return this; }, // ------------------------------------------------------------------------ rendering elements - /** render the elements in order (or a warning if no elements found) */ + /** render forward/reverse */ _renderList : function( speed, callback ){ //this.debug( '-- _renderList' ); + //precondition: there are two valid elements in workingElements var creator = this, - $tmp = jQuery( '
    ' ); + $tmp = jQuery( '
    ' ), + $list = creator.$list(); + // lose the original views, create the new, append all at once, then call their renders _.each( this.elementViews, function( view ){ view.destroy(); creator.removeElementView( view ); }); - - if( this.workingElements.length < 2 ){ - this._renderNoValidElements(); - return; - } $tmp.append( creator._createForwardElementView().$el ); $tmp.append( creator._createReverseElementView().$el ); - creator.$list().empty().append( $tmp.children() ); + $list.empty().append( $tmp.children() ); _.invoke( creator.elementViews, 'render' ); }, + /** create the forward element view */ _createForwardElementView : function(){ - var element = this.workingElements[0], - view = this._createElementView( element ); - view.identifier = _l( 'Forward' ); - return view; + return this._createElementView( this.workingElements[0], { identifier: 'forward' } ); }, + /** create the forward element view */ _createReverseElementView : function(){ - var element = this.workingElements[1], - view = this._createElementView( element ); - view.identifier = _l( 'Reverse' ); - return view; + return this._createElementView( this.workingElements[1], { identifier: 'reverse' } ); }, - /** listen to any element events */ - _listenToElementView : function( view ){ - // var creator = this; - // creator.listenTo( view, { - // }); + /** create an element view, cache in elementViews, and return */ + _createElementView : function( element, options ){ + var elementView = new this.elementViewClass( _.extend( options, { + element : element, + })); + this.elementViews.push( elementView ); + return elementView; }, + /** swap the forward, reverse elements and re-render */ swap : function(){ this.workingElements = [ this.workingElements[1], @@ -114,7 +140,7 @@ var PairCollectionCreator = _super.extend({ }, events : _.extend( _.clone( _super.prototype.events ), { - 'click .swap' : 'swap', + 'click .swap' : 'swap', }), // ------------------------------------------------------------------------ templates @@ -155,7 +181,45 @@ var PairCollectionCreator = _super.extend({ 'Once your collection is complete, enter a name and ', 'click "Create list".' ].join( '' )), '

    ' - ].join('')) + ].join('')), + + /** a simplified page communicating what went wrong and why the user needs to reselect something else */ + invalidInitial : _.template([ + '
    ', + '
    ', + '', + '<% if( _.size( problems ) ){ %>', + _l( 'The following selections could not be included due to problems' ), + '
      <% _.each( problems, function( problem ){ %>', + '
    • <%= problem.element.name %>: <%= problem.text %>
      • ', + '<% }); %>
    ', + '<% } else if( _.size( elements ) < 2 ){ %>', + _l( 'Not enough datasets were selected' ), ': <%= _.size( elements ) %>', + '<% } else if( _.size( elements ) > 2 ){ %>', + _l( 'Too many datasets were selected' ), ': <%= _.pluck( elements, "name" ) %>', + '<% } %>', + '    ', + '
    ', + '
    ', + '
    ', + '
    ', + '
  • ', + _l( 'Two (and only two) elements are needed for the pair' ), '. ', + _l( 'You may need to ' ), + '', _l( 'cancel' ), ' ', + _l( 'and reselect new elements' ), '.', + '
    • ', + '
    ', + '', + '
    ', + '
    ', + '
    ', + '', + // _l( 'Create a different kind of collection' ), + '
    ', + '
    ', + '
    ' + ].join('')), }), // ------------------------------------------------------------------------ misc @@ -178,14 +242,6 @@ var pairCollectionCreatorModal = function _pairCollectionCreatorModal( elements, * @returns {Deferred} resolved when the collection is added to the history. */ function createPairCollection( contents ){ - if( contents.length !== 2 ){ - errorModal( - 'When pairing datasets, select only two datasets: one forward and one reverse.', - 'Not a valid pair' - ); - return jQuery.Deferred().reject( 'invalid pair' ); - } - var elements = contents.toJSON(), promise = pairCollectionCreatorModal( elements, { creationFn : function( elements, name ){ diff --git a/static/maps/mvc/collection/list-collection-creator.js.map b/static/maps/mvc/collection/list-collection-creator.js.map index 0d53d5a3160..2d22c4ee1ce 100644 --- a/static/maps/mvc/collection/list-collection-creator.js.map +++ b/static/maps/mvc/collection/list-collection-creator.js.map @@ -1 +1 @@ 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    • "].join(""))},toString:function(){return"ListCollectionCreator"}}),j=function(a,b,c){var e,g=jQuery.Deferred(),h=Galaxy.modal||new d.View;return _.isArray(a)&&a.length?(b=_.defaults(b||{},{elements:a,oncancel:function(){h.hide(),g.reject("cancelled")},oncreate:function(a,b){h.hide(),g.resolve(b)}}),e=new c(b),h.show({title:b.title||f("Create a collection"),body:e.$el,width:"80%",height:"min-content",closing_events:!0}),e.render(),window._collectionCreator=e,g):g.reject("No elements")},k=function(a,b){return b=b||{},b.title=f("Create a collection from a list of datasets"),j(a,b,i)};return{DatasetCollectionElementView:h,ListCollectionCreator:i,collectionCreatorModal:j,listCollectionCreatorModal:k,createListCollection:g}}); +define(["mvc/history/hdca-model","mvc/dataset/states","mvc/base-mvc","mvc/ui/ui-modal","utils/natural-sort","utils/localization","ui/hoverhighlight"],function(a,b,c,d,e,f){function g(a){var b=a.toJSON(),c=k(b,{creationFn:function(b,c){return b=b.map(function(a){return{id:a.id,name:a.name,src:"dataset"===a.history_content_type?"hda":"hdca"}}),a.createHDCA(b,"list",c)}});return c}var h=Backbone.View.extend(c.LoggableMixin).extend({tagName:"li",className:"collection-element",initialize:function(a){this.element=a.element||{},this.selected=a.selected||!1},render:function(){return this.$el.attr("data-element-id",this.element.id).attr("draggable",!0).html(this.template({element:this.element})),this.selected&&this.$el.addClass("selected"),this},template:_.template(['<%= element.name %>','"].join("")),select:function(a){this.$el.toggleClass("selected",a),this.trigger("select",{source:this,selected:this.$el.hasClass("selected")})},discard:function(){var a=this,b=this.$el.parent().width();this.$el.animate({"margin-right":b},"fast",function(){a.destroy(),a.trigger("discard",{source:a})})},destroy:function(){this.off(),this.$el.remove()},events:{click:"_click","click .name":"_clickName","click .discard":"_clickDiscard",dragstart:"_dragstart",dragend:"_dragend",dragover:"_sendToParent",drop:"_sendToParent"},_click:function(a){a.stopPropagation(),this.select(a)},_clickName:function(a){a.stopPropagation(),a.preventDefault();var b=prompt(f("Enter a new name for the element")+":",this.element.name);b&&(this.element.name=b,this.render())},_clickDiscard:function(a){a.stopPropagation(),this.discard()},_dragstart:function(a){a.originalEvent&&(a=a.originalEvent),a.dataTransfer.effectAllowed="move",a.dataTransfer.setData("text/plain",JSON.stringify(this.element)),this.$el.addClass("dragging"),this.$el.parent().trigger("collection-element.dragstart",[this])},_dragend:function(){this.$el.removeClass("dragging"),this.$el.parent().trigger("collection-element.dragend",[this])},_sendToParent:function(a){this.$el.parent().trigger(a)},toString:function(){return"DatasetCollectionElementView()"}}),i=Backbone.View.extend(c.LoggableMixin).extend({elementViewClass:h,collectionClass:a.HistoryListDatasetCollection,className:"list-collection-creator collection-creator flex-row-container",defaultAttributes:{creationFn:function(){throw new TypeError("no creation fn for creator")},oncreate:function(){},oncancel:function(){},autoscrollDist:24,highlightClr:"rgba( 64, 255, 255, 1.0 )"},initialize:function(a){this.metric("ListCollectionCreator.initialize",a);var b=this;_.each(this.defaultAttributes,function(c,d){c=a[d]||c,b[d]=c}),b.initialElements=a.elements||[],this._instanceSetUp(),this._elementsSetUp(),this._setUpBehaviors()},_instanceSetUp:function(){this.selectedIds={},this.$dragging=null,this.blocking=!1},_elementsSetUp:function(){this.invalidElements=[],this.workingElements=[],this.elementViews=[],this.workingElements=this.initialElements.slice(0),this._ensureElementIds(),this._validateElements(),this._mangleDuplicateNames(),this._sortElements()},_ensureElementIds:function(){return this.workingElements.forEach(function(a){a.hasOwnProperty("id")||(a.id=_.uniqueId())}),this.workingElements},_validateElements:function(){var a=this;return a.invalidElements=[],this.workingElements=this.workingElements.filter(function(b){var c=a._isElementInvalid(b);return c&&a.invalidElements.push({element:b,text:c}),!c}),this.workingElements},_isElementInvalid:function(a){return"dataset"!==a.history_content_type?f("is not a dataset"):a.state!==b.OK?f(_.contains(b.NOT_READY_STATES,a.state)?"hasn't finished running yet":"has errored, is paused, or is not accessible"):a.deleted||a.purged?f("has been deleted or purged"):null},_mangleDuplicateNames:function(){var a=900,b=1,c={};this.workingElements.forEach(function(d){for(var e=d.name;c.hasOwnProperty(e);)if(e=d.name+" ("+b+")",b+=1,b>=a)throw new Error("Safety hit in while loop - thats impressive");d.name=e,c[d.name]=!0})},_sortElements:function(){},render:function(a){return this.$el.empty().html(this.templates.main()),this._renderHeader(a),this._renderMiddle(a),this._renderFooter(a),this._addPluginComponents(),this.$(".collection-name").focus(),this.trigger("rendered",this),this},_renderHeader:function(){var a=this.$(".header").empty().html(this.templates.header()).find(".help-content").prepend($(this.templates.helpContent()));return this.invalidElements.length&&this._invalidElementsAlert(),a},_renderMiddle:function(a){var b=this.$(".middle").empty().html(this.templates.middle());return this._renderList(a),b},_renderFooter:function(){var a=this.$(".footer").empty().html(this.templates.footer());return"function"==typeof this.oncancel&&this.$(".cancel-create.btn").show(),a},_addPluginComponents:function(){this.$(".help-content i").hoverhighlight(".collection-creator",this.highlightClr)},_invalidElementsAlert:function(){this._showAlert(this.templates.invalidElements({problems:this.invalidElements}),"alert-warning")},_validationWarning:function(a,b){var c="validation-warning";"name"===a&&(a=this.$(".collection-name").add(this.$(".collection-name-prompt")),this.$(".collection-name").focus().select()),b?(a=a||this.$("."+c),a.removeClass(c)):a.addClass(c)},$list:function(){return this.$(".collection-elements")},_renderClearSelected:function(){_.size(this.selectedIds)?this.$(".collection-elements-controls > .clear-selected").show():this.$(".collection-elements-controls > .clear-selected").hide()},_renderList:function(){var a=this,b=jQuery("
    ");return _.each(this.elementViews,function(b){b.destroy(),a.removeElementView(b)}),this.workingElements.length?(a.workingElements.forEach(function(c){var d=a._createElementView(c);b.append(d.$el)}),a._renderClearSelected(),a.$list().empty().append(b.children()),void _.invoke(a.elementViews,"render")):void this._renderNoValidElements()},_createElementView:function(a){var b=new this.elementViewClass({element:a,selected:_.has(this.selectedIds,a.id)});return this.elementViews.push(b),this._listenToElementView(b),b},_listenToElementView:function(a){var b=this;b.listenTo(a,{select:function(a){var c=a.source.element;a.selected?b.selectedIds[c.id]=!0:delete b.selectedIds[c.id],b.trigger("elements:select",a)},discard:function(a){b.trigger("elements:discard",a)}})},addElementView:function(){},removeElementView:function(a){delete this.selectedIds[a.element.id],this._renderClearSelected(),this.elementViews=_.without(this.elementViews,a),this.stopListening(a)},_renderNoElementsLeft:function(){this.$(".collection-elements").append(this.templates.noElementsLeft())},_renderNoValidElements:function(){this.$(".collection-elements").append(this.templates.noValidElements())},_elementToJSON:function(a){return a},createList:function(a){if(!this.workingElements.length){var b=f("No valid elements for final list")+". ";return b+=''+f("Cancel")+" ",b+=f("or"),b+=' '+f("start over")+".",void this._showAlert(b)}var c=this,d=this.workingElements.map(function(a){return c._elementToJSON(a)});return c.blocking=!0,c.creationFn(d,a).always(function(){c.blocking=!1}).fail(function(a,b){c.trigger("error",{xhr:a,status:b,message:f("An error occurred while creating this collection")})}).done(function(a,b,d){c.trigger("collection:created",a,b,d),c.metric("collection:created",a),"function"==typeof c.oncreate&&c.oncreate.call(this,a,b,d)})},_setUpBehaviors:function(){return this.on("error",this._errorHandler),this.once("rendered",function(){this.trigger("rendered:initial",this)}),this.on("elements:select",function(){this._renderClearSelected()}),this.on("elements:discard",function(a){var b=a.source.element;this.removeElementView(a.source),this.workingElements=_.without(this.workingElements,b),this.workingElements.length||this._renderNoElementsLeft()}),this},_errorHandler:function(a){this.error(a);var b=this;if(content=a.message||f("An error occurred"),a.xhr){var c=a.xhr,d=a.message;content+=0===c.readyState&&0===c.status?": "+f("Galaxy could not be reached and may be updating.")+f(" Try again in a few minutes."):c.responseJSON?":
    "+JSON.stringify(c.responseJSON)+"
    ":": "+d}b._showAlert(content,"alert-danger")},events:{"click .more-help":"_clickMoreHelp","click .less-help":"_clickLessHelp","click .main-help":"_toggleHelp","click .header .alert button":"_hideAlert","click .reset":"reset","click .clear-selected":"clearSelectedElements","click .collection-elements":"clearSelectedElements","dragover .collection-elements":"_dragoverElements","drop .collection-elements":"_dropElements","collection-element.dragstart .collection-elements":"_elementDragstart","collection-element.dragend .collection-elements":"_elementDragend","change .collection-name":"_changeName","keydown .collection-name":"_nameCheckForEnter","click .cancel-create":function(){"function"==typeof this.oncancel&&this.oncancel.call(this)},"click .create-collection":"_clickCreate"},_clickMoreHelp:function(a){a.stopPropagation(),this.$(".main-help").addClass("expanded"),this.$(".more-help").hide()},_clickLessHelp:function(a){a.stopPropagation(),this.$(".main-help").removeClass("expanded"),this.$(".more-help").show()},_toggleHelp:function(a){a.stopPropagation(),this.$(".main-help").toggleClass("expanded"),this.$(".more-help").toggle()},_showAlert:function(a,b){b=b||"alert-danger",this.$(".main-help").hide(),this.$(".header .alert").attr("class","alert alert-dismissable").addClass(b).show().find(".alert-message").html(a)},_hideAlert:function(){this.$(".main-help").show(),this.$(".header .alert").hide()},reset:function(){this._instanceSetUp(),this._elementsSetUp(),this.render()},clearSelectedElements:function(){this.$(".collection-elements .collection-element").removeClass("selected"),this.$(".collection-elements-controls > .clear-selected").hide()},_dragoverElements:function(a){a.preventDefault();var b=this.$list();this._checkForAutoscroll(b,a.originalEvent.clientY);var c=this._getNearestElement(a.originalEvent.clientY);this.$(".element-drop-placeholder").remove();var d=$('
    ');c.size()?c.before(d):b.append(d)},_checkForAutoscroll:function(a,b){var c=2,d=a.offset(),e=a.scrollTop(),f=b-d.top,g=d.top+a.outerHeight()-b;f>=0&&f=0&&ga&&a>f-g)return e}return $()},_dropElements:function(a){a.originalEvent&&(a=a.originalEvent),a.preventDefault(),a.dataTransfer.dropEffect="move";var b=this._getNearestElement(a.clientY);return b.size()?this.$dragging.insertBefore(b):this.$dragging.insertAfter(this.$(".collection-elements .collection-element").last()),this._syncOrderToDom(),!1},_syncOrderToDom:function(){var a=this,b=[];this.$(".collection-elements .collection-element").each(function(){var c=$(this).attr("data-element-id"),d=_.findWhere(a.workingElements,{id:c});d?b.push(d):console.error("missing element: ",c)}),this.workingElements=b,this._renderList()},_elementDragstart:function(a,b){b.select(!0),this.$dragging=this.$(".collection-elements .collection-element.selected")},_elementDragend:function(){$(".element-drop-placeholder").remove(),this.$dragging=null},_changeName:function(){this._validationWarning("name",!!this._getName())},_nameCheckForEnter:function(a){13!==a.keyCode||this.blocking||this._clickCreate()},_getName:function(){return _.escape(this.$(".collection-name").val())},_clickCreate:function(){var a=this._getName();a?this.blocking||this.createList(a):this._validationWarning("name")},templates:{main:_.template(['
    ','
    ','
    '].join("")),header:_.template(['
    ','',f("More help"),"",'
    ','',f("Less"),"","
    ","
    ",'
    ','','',"
    "].join("")),middle:_.template(['
    ','',f("Start over"),"",'',f("Clear selected"),"","
    ",'
    ',"
    "].join("")),footer:_.template(['
    ','
    ','','
    ',f("Name"),":
    ","
    ","
    ",'
    ','
    ','",'
    ','",'","
    ","
    ",'
    ','","
    ","
    "].join("")),helpContent:_.template(["

    ",f(["Collections of datasets are permanent, ordered lists of datasets that can be passed to tools and ","workflows in order to have analyses done on each member of the entire group. This interface allows ","you to create a collection and re-order the final collection."].join("")),"

    ","
      ","
    • ",f(["Rename elements in the list by clicking on ",'the existing name.'].join("")),"
      • ","
    • ",f(["Discard elements from the final created list by clicking on the ",'"Discard" button.'].join("")),"
      • ","
    • ",f(["Reorder the list by clicking and dragging elements. Select multiple elements by clicking on ",'them and you can then move those selected by dragging the ',"entire group. Deselect them by clicking them again or by clicking the ",'the "Clear selected" link.'].join("")),"
      • ","
    • ",f(['Click the "Start over" link to begin again as if you had just opened ',"the interface."].join("")),"
      • ","
    • ",f(['Click the "Cancel" button to exit the interface.'].join("")),"
      • ","

    ","

    ",f(['Once your collection is complete, enter a name and ','click "Create list".'].join("")),"

    "].join("")),invalidElements:_.template([f("The following selections could not be included due to problems"),"
      <% _.each( problems, function( problem ){ %>","
    • <%= problem.element.name %>: <%= problem.text %>
      • ","<% }); %>
    "].join("")),noElementsLeft:_.template(['
  • ',f("No elements left"),"
    ",f("Would you like to "),'',f("start over"),"?","
    • "].join("")),noValidElements:_.template(['
  • ',f("No valid elements!"),"
    ",f("You may need to "),'',f("cancel")," ","and reselect new elements","
    • "].join(""))},toString:function(){return"ListCollectionCreator"}}),j=function(a,b,c){var e,g=jQuery.Deferred(),h=Galaxy.modal||new d.View;return _.isArray(a)&&a.length?(b=_.defaults(b||{},{elements:a,oncancel:function(){h.hide(),g.reject("cancelled")},oncreate:function(a,b){h.hide(),g.resolve(b)}}),e=new c(b),h.show({title:b.title||f("Create a collection"),body:e.$el,width:"80%",height:"min-content",closing_events:!0}),e.render(),window._collectionCreator=e,g):g.reject("No elements")},k=function(a,b){return b=b||{},b.title=f("Create a collection from a list of datasets"),j(a,b,i)};return{DatasetCollectionElementView:h,ListCollectionCreator:i,collectionCreatorModal:j,listCollectionCreatorModal:k,createListCollection:g}}); //# sourceMappingURL=../../../maps/mvc/collection/list-collection-creator.js.map \ No newline at end of file diff --git a/static/scripts/mvc/collection/pair-collection-creator.js b/static/scripts/mvc/collection/pair-collection-creator.js index a37cabaa775..9c984cde606 100644 --- a/static/scripts/mvc/collection/pair-collection-creator.js +++ b/static/scripts/mvc/collection/pair-collection-creator.js @@ -1,2 +1,2 @@ -define(["mvc/collection/list-collection-creator","mvc/history/hdca-model","mvc/ui/error-modal","mvc/base-mvc","utils/localization"],function(a,b,c,d,e){function f(a){if(2!==a.length)return c("When pairing datasets, select only two datasets: one forward and one reverse.","Not a valid pair"),jQuery.Deferred().reject("invalid pair");var b=a.toJSON(),d=j(b,{creationFn:function(b,c){return b=[{name:"forward",src:"hda",id:b[0].id},{name:"reverse",src:"hda",id:b[1].id}],a.createHDCA(b,"paired",c)}});return d}var g=Backbone.View.extend(d.LoggableMixin).extend({tagName:"li",className:"collection-element",initialize:function(a){this.element=a.element||{},this.identifier=a.identifier},render:function(){return this.$el.attr("data-element-id",this.element.id).html(this.template({identifier:this.identifier,element:this.element})),this},template:_.template(['<%= identifier %>','<%= element.name %>'].join("")),destroy:function(){this.off(),this.$el.remove()},toString:function(){return"DatasetCollectionElementView()"}}),h=a.ListCollectionCreator,i=h.extend({elementViewClass:g,collectionClass:b.HistoryPairDatasetCollection,className:"pair-collection-creator collection-creator flex-row-container",_mangleDuplicateNames:function(){},_renderList:function(){var a=this,b=jQuery("
    ");return _.each(this.elementViews,function(b){b.destroy(),a.removeElementView(b)}),this.workingElements.length<2?void this._renderNoValidElements():(b.append(a._createForwardElementView().$el),b.append(a._createReverseElementView().$el),a.$list().empty().append(b.children()),void _.invoke(a.elementViews,"render"))},_createForwardElementView:function(){var a=this.workingElements[0],b=this._createElementView(a);return b.identifier=e("Forward"),b},_createReverseElementView:function(){var a=this.workingElements[1],b=this._createElementView(a);return b.identifier=e("Reverse"),b},_listenToElementView:function(){},swap:function(){this.workingElements=[this.workingElements[1],this.workingElements[0]],this._renderList()},events:_.extend(_.clone(h.prototype.events),{"click .swap":"swap"}),templates:_.extend(_.clone(h.prototype.templates),{middle:_.template(['
    ','',e("Swap"),"","
    ",'
    ',"
    "].join("")),helpContent:_.template(["

    ",e(["Pair collections are permanent collections containing two datasets: one forward and one reverse. ","Often these are forward and reverse reads. The pair collections can be passed to tools and ","workflows in order to have analyses done on both datasets. This interface allows ","you to create a pair, name it, and swap which is forward and which reverse."].join("")),"

    ","
      ","
    • ",e(['Click the "Swap" link to make your forward dataset the reverse ',"and the reverse dataset forward."].join("")),"
      • ","
    • ",e(['Click the "Cancel" button to exit the interface.'].join("")),"
      • ","

    ","

    ",e(['Once your collection is complete, enter a name and ','click "Create list".'].join("")),"

    "].join(""))}),toString:function(){return"PairCollectionCreator"}}),j=function(b,c){return c=c||{},c.title=e("Create a collection from a pair of datasets"),a.collectionCreatorModal(b,c,i)};return{PairCollectionCreator:i,pairCollectionCreatorModal:j,createPairCollection:f}}); +define(["mvc/collection/list-collection-creator","mvc/history/hdca-model","mvc/base-mvc","utils/localization"],function(a,b,c,d){function e(a){var b=a.toJSON(),c=i(b,{creationFn:function(b,c){return b=[{name:"forward",src:"hda",id:b[0].id},{name:"reverse",src:"hda",id:b[1].id}],a.createHDCA(b,"paired",c)}});return c}var f=Backbone.View.extend(c.LoggableMixin).extend({tagName:"li",className:"collection-element",initialize:function(a){this.element=a.element||{},this.identifier=a.identifier},render:function(){return this.$el.attr("data-element-id",this.element.id).html(this.template({identifier:this.identifier,element:this.element})),this},template:_.template(['<%= identifier %>','<%= element.name %>'].join("")),destroy:function(){this.off(),this.$el.remove()},toString:function(){return"DatasetCollectionElementView()"}}),g=a.ListCollectionCreator,h=g.extend({elementViewClass:f,collectionClass:b.HistoryPairDatasetCollection,className:"pair-collection-creator collection-creator flex-row-container",_mangleDuplicateNames:function(){},render:function(a,b){var c=this.workingElements.length;return 2===c?g.prototype.render.call(this,a,b):this._renderInvalid(a,b)},_renderInvalid:function(){return this.$el.empty().html(this.templates.invalidInitial({problems:this.invalidElements,elements:this.workingElements})),"function"==typeof this.oncancel&&this.$(".cancel-create.btn").show(),this.trigger("rendered",this),this},_renderList:function(){var a=this,b=jQuery("
    "),c=a.$list();_.each(this.elementViews,function(b){b.destroy(),a.removeElementView(b)}),b.append(a._createForwardElementView().$el),b.append(a._createReverseElementView().$el),c.empty().append(b.children()),_.invoke(a.elementViews,"render")},_createForwardElementView:function(){return this._createElementView(this.workingElements[0],{identifier:"forward"})},_createReverseElementView:function(){return this._createElementView(this.workingElements[1],{identifier:"reverse"})},_createElementView:function(a,b){var c=new this.elementViewClass(_.extend(b,{element:a}));return this.elementViews.push(c),c},swap:function(){this.workingElements=[this.workingElements[1],this.workingElements[0]],this._renderList()},events:_.extend(_.clone(g.prototype.events),{"click .swap":"swap"}),templates:_.extend(_.clone(g.prototype.templates),{middle:_.template(['
    ','',d("Swap"),"","
    ",'
    ',"
    "].join("")),helpContent:_.template(["

    ",d(["Pair collections are permanent collections containing two datasets: one forward and one reverse. ","Often these are forward and reverse reads. The pair collections can be passed to tools and ","workflows in order to have analyses done on both datasets. This interface allows ","you to create a pair, name it, and swap which is forward and which reverse."].join("")),"

    ","
      ","
    • ",d(['Click the "Swap" link to make your forward dataset the reverse ',"and the reverse dataset forward."].join("")),"
      • ","
    • ",d(['Click the "Cancel" button to exit the interface.'].join("")),"
      • ","

    ","

    ",d(['Once your collection is complete, enter a name and ','click "Create list".'].join("")),"

    "].join("")),invalidInitial:_.template(['
    ','
    ','',"<% if( _.size( problems ) ){ %>",d("The following selections could not be included due to problems"),"
      <% _.each( problems, function( problem ){ %>","
    • <%= problem.element.name %>: <%= problem.text %>
      • ","<% }); %>
    ","<% } else if( _.size( elements ) < 2 ){ %>",d("Not enough datasets were selected"),": <%= _.size( elements ) %>","<% } else if( _.size( elements ) > 2 ){ %>",d("Too many datasets were selected"),': <%= _.pluck( elements, "name" ) %>',"<% } %>","    ","
    ","
    ",'
    ','
    ','
  • ',d("Two (and only two) elements are needed for the pair"),". ",d("You may need to "),'',d("cancel")," ",d("and reselect new elements"),".","
    • ","
    ","
    ",'
    ','
    ','
    ','","
    ","
    ","
    "].join(""))}),toString:function(){return"PairCollectionCreator"}}),i=function(b,c){return c=c||{},c.title=d("Create a collection from a pair of datasets"),a.collectionCreatorModal(b,c,h)};return{PairCollectionCreator:h,pairCollectionCreatorModal:i,createPairCollection:e}}); //# sourceMappingURL=../../../maps/mvc/collection/pair-collection-creator.js.map \ No newline at end of file diff --git a/templates/webapps/galaxy/root/history.mako b/templates/webapps/galaxy/root/history.mako index a59133671f3..0750f93720a 100644 --- a/templates/webapps/galaxy/root/history.mako +++ b/templates/webapps/galaxy/root/history.mako @@ -16,65 +16,32 @@ $(function(){ -## <%def name="javascript_app()"> -## -## ${ galaxy_client.load( app='app', history=history, hdas=hdas, show_deleted=show_deleted, show_hidden=show_hidden ) } -## - <%def name="javascript_app()"> ${ galaxy_client.load( app='app', history=history, hdas=hdas, show_deleted=show_deleted, show_hidden=show_hidden ) }