diff --git a/.gitignore b/.gitignore
index 7eccc46e1f6..31f0028dcb6 100644
--- a/.gitignore
+++ b/.gitignore
@@ -83,6 +83,9 @@ tool-data/shared/ucsc/ucsc_build_sites.txt
 tool-data/*.loc
 tool-data/genome/*
 tool-data/*.sample
+tool-data/testtoolshed.g2.bx.psu.edu/
+tool-data/toolshed.g2.bx.psu.edu/
+
 
 # Test output
 test-data-cache
@@ -121,4 +124,3 @@ doc/build
 .DS_Store
 *.rej
 *~
-
diff --git a/CONTRIBUTORS.md b/CONTRIBUTORS.md
index cfa5f147908..01fc012adb2 100644
--- a/CONTRIBUTORS.md
+++ b/CONTRIBUTORS.md
@@ -32,6 +32,7 @@ The following individuals have contributed code to Galaxy:
 * Ira Cooke <iracooke@gmail.com>
 * Nate Coraor <nate@bx.psu.edu>
 * Michael Cotterell <mepcotterell@gmail.com>
+* Michael R. Crusoe <crusoe@ucdavis.edu>
 * Gianmauro Cuccuru <gmauro@crs4.it>
 * Frederik Delaere <frederik.delaere@gmail.com>
 * Olivia Doppelt <olivia.doppelt@pasteur.fr>
diff --git a/client/galaxy/scripts/galaxy-app-base.js b/client/galaxy/scripts/galaxy-app-base.js
index 5825ce743db..d5578099ae8 100644
--- a/client/galaxy/scripts/galaxy-app-base.js
+++ b/client/galaxy/scripts/galaxy-app-base.js
@@ -137,6 +137,10 @@ GalaxyApp.prototype._initLogger = function _initLogger( loggerOptions ){
         } catch( storageErr ){}
     }
     self.logger = new metricsLogger.MetricsLogger( loggerOptions );
+    self.emit = {};
+    [ 'log', 'debug', 'info', 'warn', 'error', 'metric' ].map(function( i ) {
+        self.emit[ i ] = function( data ) { self.logger.emit( i, arguments[ 0 ], Array.prototype.slice.call( arguments, 1 ) ) };
+    });
 
     if( self.config.debug ){
         // add this logger to mvc's loggable mixin so that all models can use the logger
diff --git a/client/galaxy/scripts/libs/jquery/select2.js b/client/galaxy/scripts/libs/jquery/select2.js
index 7116cd77288..1d31ce8f49d 100755
--- a/client/galaxy/scripts/libs/jquery/select2.js
+++ b/client/galaxy/scripts/libs/jquery/select2.js
@@ -2980,13 +2980,12 @@ the specific language governing permissions and limitations under the Apache Lic
 
             // keep track of the search's value before it gets cleared
             this.nextSearchTerm = this.opts.nextSearchTerm(data, this.search.val());
-
-            this.clearSearch();
-            this.updateResults();
-
+            this.moveHighlight(1);
             if (this.select || !this.opts.closeOnSelect) this.postprocessResults(data, false, this.opts.closeOnSelect===true);
 
             if (this.opts.closeOnSelect) {
+                this.clearSearch()
+                this.updateResults()
                 this.close();
                 this.search.width(10);
             } else {
diff --git a/client/galaxy/scripts/mvc/collection/list-of-pairs-collection-creator.js b/client/galaxy/scripts/mvc/collection/list-of-pairs-collection-creator.js
index 8aa18778b37..6e14ae6f18b 100644
--- a/client/galaxy/scripts/mvc/collection/list-of-pairs-collection-creator.js
+++ b/client/galaxy/scripts/mvc/collection/list-of-pairs-collection-creator.js
@@ -393,8 +393,8 @@ var PairedCollectionCreator = Backbone.View.extend( baseMVC.LoggableMixin ).exte
         strategy = strategy || this.strategy;
         split = this._splitByFilters();
         paired = paired.concat( this[ strategy ].call( this, {
-                listA : split[0],
-                listB : split[1]
+            listA : split[0],
+            listB : split[1]
         }));
         return paired;
     },
@@ -506,8 +506,8 @@ var PairedCollectionCreator = Backbone.View.extend( baseMVC.LoggableMixin ).exte
         var fwdName = fwd.name,
             revName = rev.name,
             lcs = this._naiveStartingAndEndingLCS(
-                fwdName.replace( this.filters[0], '' ),
-                revName.replace( this.filters[1], '' )
+                fwdName.replace( new RegExp( this.filters[0] ), '' ),
+                revName.replace( new RegExp( this.filters[1] ), '' )
             );
         if( removeExtensions ){
             var lastDotIndex = lcs.lastIndexOf( '.' );
diff --git a/client/galaxy/scripts/mvc/form/form-parameters.js b/client/galaxy/scripts/mvc/form/form-parameters.js
index 0ddcc484898..6837c51ac02 100644
--- a/client/galaxy/scripts/mvc/form/form-parameters.js
+++ b/client/galaxy/scripts/mvc/form/form-parameters.js
@@ -71,7 +71,7 @@ define(['utils/utils',
                 }
 
                 // log
-                console.debug('tools-form::_addRow() : Auto matched field type (' + input_def.type + ').');
+                Galaxy.emit.debug('form-parameters::_addRow()', 'Auto matched field type (' + input_def.type + ').');
             }
 
             // set field value
diff --git a/client/galaxy/scripts/mvc/form/form-repeat.js b/client/galaxy/scripts/mvc/form/form-repeat.js
index 89d1b4818f3..0ea5dd7ddd5 100644
--- a/client/galaxy/scripts/mvc/form/form-repeat.js
+++ b/client/galaxy/scripts/mvc/form/form-repeat.js
@@ -67,7 +67,7 @@ var View = Backbone.View.extend({
     add: function(options) {
         // repeat block already exists
         if (!options.id || this.list[options.id]) {
-            console.debug('form-repeat::add - Duplicate repeat block id.');
+            Galaxy.emit.debug('form-repeat::add()', 'Duplicate repeat block id.');
             return;
         }
 
@@ -123,7 +123,7 @@ var View = Backbone.View.extend({
     del: function(id) {
         // could not find element
         if (!this.list[id]) {
-            console.debug('form-repeat::del - Invalid repeat block id.');
+            Galaxy.emit.debug('form-repeat::del()', 'Invalid repeat block id.');
             return;
         }
 
diff --git a/client/galaxy/scripts/mvc/form/form-select-content.js b/client/galaxy/scripts/mvc/form/form-select-content.js
index c3445fb017c..2c4d6b20198 100644
--- a/client/galaxy/scripts/mvc/form/form-select-content.js
+++ b/client/galaxy/scripts/mvc/form/form-select-content.js
@@ -237,7 +237,7 @@ var View = Backbone.View.extend({
                         }
                     }
                 } catch (err) {
-                    console.debug('tools-select-content::value() - Skipped.');
+                    Galaxy.emit.debug('tools-select-content::value()', 'Skipped.');
                 }
             } else {
                 for (var i in this.list) {
diff --git a/client/galaxy/scripts/mvc/form/form-view.js b/client/galaxy/scripts/mvc/form/form-view.js
index 2f19ac80c81..51939fea7ae 100644
--- a/client/galaxy/scripts/mvc/form/form-view.js
+++ b/client/galaxy/scripts/mvc/form/form-view.js
@@ -23,7 +23,7 @@ define(['utils/utils', 'mvc/ui/ui-portlet', 'mvc/ui/ui-misc',
             this.options = Utils.merge(options, this.optionsDefault);
 
             // log options
-            console.debug(this.options);
+            Galaxy.emit.debug('form-view::initialize()', 'Ready to build form.', this.options);
 
             // link galaxy modal or create one
             var galaxy = parent.Galaxy;
@@ -69,7 +69,7 @@ define(['utils/utils', 'mvc/ui/ui-portlet', 'mvc/ui/ui-misc',
                             }
                             field.update(new_options);
                             field.trigger('change');
-                            console.debug('Updating options for ' + input_id);
+                            Galaxy.emit.debug('form-view::update()', 'Updating options for ' + input_id);
                         }
                     }
                 }
@@ -231,7 +231,7 @@ define(['utils/utils', 'mvc/ui/ui-portlet', 'mvc/ui/ui-misc',
             }
 
             // log
-            console.debug('tools-form-base::initialize() - Completed.');
+            Galaxy.emit.debug('form-view::initialize()', 'Completed');
         }
     });
 });
\ No newline at end of file
diff --git a/client/galaxy/scripts/mvc/grid/grid-template.js b/client/galaxy/scripts/mvc/grid/grid-template.js
index fc51b34c052..28b640d9589 100644
--- a/client/galaxy/scripts/mvc/grid/grid-template.js
+++ b/client/galaxy/scripts/mvc/grid/grid-template.js
@@ -213,7 +213,7 @@ return {
                         } else {
                             label_class = 'use-outbound';
                         }
-                        tmpl += '<a class="label ' + label_class + '" href="' + link + '" onclick="return false;">' + value + '</a>';
+                        tmpl += '<a class="menubutton-label ' + label_class + '" href="' + link + '" onclick="return false;">' + value + '</a>';
                         if (options.operations.length != 0) {
                             tmpl += '</div>';
                         }
diff --git a/client/galaxy/scripts/mvc/library/library-folderrow-view.js b/client/galaxy/scripts/mvc/library/library-folderrow-view.js
index 3562a070cde..271142bb8ce 100644
--- a/client/galaxy/scripts/mvc/library/library-folderrow-view.js
+++ b/client/galaxy/scripts/mvc/library/library-folderrow-view.js
@@ -37,7 +37,7 @@ var FolderRowView = Backbone.View.extend({
       } else{
         template = this.templateRowFolder();
       }
-    } else if (folder_item.get('type') === 'file' || folder_item.get('model_class') === 'LibraryDataset'){
+    } else if (folder_item.get('type') === 'file' || folder_item.get('model_class') === 'LibraryDatasetDatasetAssociation'){
       this.options.type = 'file';
       if (folder_item.get('deleted')){
         template = this.templateRowDeletedFile();
diff --git a/client/galaxy/scripts/mvc/tools/tools-form-base.js b/client/galaxy/scripts/mvc/tools/tools-form-base.js
index bd1c82914f0..76dc2cce136 100644
--- a/client/galaxy/scripts/mvc/tools/tools-form-base.js
+++ b/client/galaxy/scripts/mvc/tools/tools-form-base.js
@@ -33,7 +33,7 @@ define(['utils/utils', 'utils/deferred', 'mvc/ui/ui-misc', 'mvc/form/form-view',
             this.$el.hide();
             this.deferred.execute(function(){
                 Backbone.View.prototype.remove.call(self);
-                console.debug('tools-form-base::remove() - Destroy view.');
+                Galaxy.emit.debug('tools-form-base::remove()', 'Destroy view.');
             });
         },
 
@@ -102,8 +102,7 @@ define(['utils/utils', 'utils/deferred', 'mvc/ui/ui-misc', 'mvc/form/form-view',
                         message     : 'Now you are using \'' + self.options.name + '\' version ' + self.options.version + '.',
                         persistent  : false
                     });
-                    console.debug('tools-form::initialize() - Initial tool model ready.');
-                    console.debug(new_model);
+                    Galaxy.emit.debug('tools-form-base::initialize()', 'Initial tool model ready.', new_model);
                     process.resolve();
 
                 },
@@ -127,8 +126,7 @@ define(['utils/utils', 'utils/deferred', 'mvc/ui/ui-misc', 'mvc/form/form-view',
                             }
                         });
                     }
-                    console.debug('tools-form::initialize() - Initial tool model request failed.');
-                    console.debug(response);
+                    Galaxy.emit.debug('tools-form::initialize()', 'Initial tool model request failed.', response);
                     process.reject();
                 }
             });
@@ -157,8 +155,7 @@ define(['utils/utils', 'utils/deferred', 'mvc/ui/ui-misc', 'mvc/form/form-view',
             form.wait(true);
 
             // log tool state
-            console.debug('tools-form-base::_updateModel() - Sending current state (see below).');
-            console.debug(current_state);
+            Galaxy.emit.debug('tools-form-base::_updateModel()', 'Sending current state.', current_state);
 
             // post job
             Utils.request({
@@ -169,13 +166,11 @@ define(['utils/utils', 'utils/deferred', 'mvc/ui/ui-misc', 'mvc/form/form-view',
                     self.form.update(new_model['tool_model'] || new_model);
                     self.options.update && self.options.update(new_model);
                     form.wait(false);
-                    console.debug('tools-form-base::_updateModel() - Received new model (see below).');
-                    console.debug(new_model);
+                    Galaxy.emit.debug('tools-form-base::_updateModel()', 'Received new model.', new_model);
                     process.resolve();
                 },
                 error   : function(response) {
-                    console.debug('tools-form-base::_updateModel() - Refresh request failed.');
-                    console.debug(response);
+                    Galaxy.emit.debug('tools-form-base::_updateModel()', 'Refresh request failed.', response);
                     process.reject();
                 }
             });
diff --git a/client/galaxy/scripts/mvc/tools/tools-form-workflow.js b/client/galaxy/scripts/mvc/tools/tools-form-workflow.js
index ba3618e0631..772302838d5 100644
--- a/client/galaxy/scripts/mvc/tools/tools-form-workflow.js
+++ b/client/galaxy/scripts/mvc/tools/tools-form-workflow.js
@@ -13,7 +13,7 @@ define(['utils/utils', 'mvc/tools/tools-form-base'],
             // link with node representation in workflow module
             this.node = options.node;
             if (!this.node) {
-                console.debug('FAILED - tools-form-workflow:initialize() - Node not found in workflow.');
+                Galaxy.emit.debug('tools-form-workflow::initialize()', 'Node not found in workflow.');
                 return;
             }
 
diff --git a/client/galaxy/scripts/mvc/tools/tools-jobs.js b/client/galaxy/scripts/mvc/tools/tools-jobs.js
index 35f28c5e762..5b025bb97d6 100644
--- a/client/galaxy/scripts/mvc/tools/tools-jobs.js
+++ b/client/galaxy/scripts/mvc/tools/tools-jobs.js
@@ -19,13 +19,13 @@ return {
 
         // validate job definition
         if (!this._validation(form, job_def)) {
-            console.debug('tools-jobs::submit - Submission canceled. Validation failed.');
+            Galaxy.emit.debug('tools-jobs::submit()', 'Submission canceled. Validation failed.');
             callback && callback();
             return;
         }
 
         // debug
-        console.debug(job_def);
+        Galaxy.emit.debug('tools-jobs::submit()', 'Validation complete.', job_def);
 
         // post job
         Utils.request({
@@ -40,7 +40,7 @@ return {
             },
             error   : function(response) {
                 callback && callback();
-                console.debug(response);
+                Galaxy.emit.debug('tools-jobs::submit', 'Submission failed.', response);
                 if (response && response.err_data) {
                     var error_messages = form.data.matchResponse(response.err_data);
                     for (var input_id in error_messages) {
@@ -84,7 +84,7 @@ return {
 
             // check if objects where properly identified
             if (!input_id || !input_def || !input_field) {
-                console.debug('tools-jobs::_validation - Retrieving input objects failed.');
+                Galaxy.emit.debug('tools-jobs::_validation()', 'Retrieving input objects failed.');
                 continue;
             }
 
diff --git a/client/galaxy/scripts/mvc/ui/ui-select-default.js b/client/galaxy/scripts/mvc/ui/ui-select-default.js
index 0b4f9c930ab..e103c361ef6 100644
--- a/client/galaxy/scripts/mvc/ui/ui-select-default.js
+++ b/client/galaxy/scripts/mvc/ui/ui-select-default.js
@@ -29,8 +29,20 @@ var View = Backbone.View.extend({
 
         // link elements
         this.$select = this.$el.find('.select');
-        this.$icon = this.$el.find('.icon');
-        this.$button = this.$el.find('.button');
+        this.$icon_dropdown = this.$el.find('.icon-dropdown');
+
+        // allow regular multi-select field to be resized
+        var minHeight = null;
+        this.$('.icon-resize').on('mousedown', function(event) {
+            var currentY = event.pageY;
+            var currentHeight = self.$select.height();
+            minHeight = minHeight || currentHeight;
+            $('#dd-helper').show().on('mousemove', function(event) {
+                self.$select.height(Math.max(currentHeight + (event.pageY - currentY), minHeight));
+            }).on('mouseup mouseleave', function() {
+                $('#dd-helper').hide().off();
+            });
+        });
 
         // multiple select fields have an additional button and other custom properties
         if (this.options.multiple) {
@@ -47,11 +59,11 @@ var View = Backbone.View.extend({
                     }
                 });
                 this.$el.prepend(this.all_button.$el);
+            } else {
+                this.$el.addClass('ui-select-multiple');
             }
-            // customize style and content
-            this.$el.addClass('ui-select-multiple');
             this.$select.prop('multiple', true);
-            this.$button.remove();
+            this.$icon_dropdown.remove();
         }
 
         // update initial options
@@ -142,15 +154,15 @@ var View = Backbone.View.extend({
     /** Show a spinner indicating that the select options are currently loaded
     */
     wait: function() {
-        this.$icon.removeClass();
-        this.$icon.addClass('fa fa-spinner fa-spin');
+        this.$icon_dropdown.removeClass();
+        this.$icon_dropdown.addClass('icon-dropdown fa fa-spinner fa-spin');
     },
 
     /** Hide spinner indicating that the request has been completed
     */
     unwait: function() {
-        this.$icon.removeClass();
-        this.$icon.addClass('fa fa-caret-down');
+        this.$icon_dropdown.removeClass();
+        this.$icon_dropdown.addClass('icon-dropdown fa fa-caret-down');
     },
 
     /** Returns true if the field is disabled
@@ -205,7 +217,7 @@ var View = Backbone.View.extend({
         // update to searchable field (in this case select2)
         if (this.options.searchable) {
             this.$select.select2('destroy');
-            this.$select.select2();
+            this.$select.select2({ closeOnSelect: !this.options.multiple });
             this.$( '.select2-container .select2-search input' ).off( 'blur' );
         }
 
@@ -267,8 +279,9 @@ var View = Backbone.View.extend({
     _template: function(options) {
         return  '<div id="' + options.id + '" class="' + options.cls + '">' +
                     '<select id="' + options.id + '_select" class="select"/>' +
-                    '<div class="button">' +
-                        '<i class="icon"/>' +
+                    '<div class="icon-dropdown"/>' +
+                    '<div class="icon-resize">' +
+                         '<i class="fa fa-angle-double-right fa-rotate-45"/>' +
                     '</div>' +
                 '</div>';
     }
diff --git a/client/galaxy/scripts/mvc/upload/upload-button.js b/client/galaxy/scripts/mvc/upload/upload-button.js
index a91bfd69b8f..32cb194227f 100644
--- a/client/galaxy/scripts/mvc/upload/upload-button.js
+++ b/client/galaxy/scripts/mvc/upload/upload-button.js
@@ -76,11 +76,9 @@ var View = Backbone.View.extend({
     _template: function() {
         return  '<div class="upload-button">' +
                     '<div class="progress">' +
-                        '<div class="progress-bar"></div>' +
-                    '</div>' +
-                    '<div id="label" class="label">' +
+                        '<div class="progress-bar"/>' +
                         '<a class="panel-header-button" href="javascript:void(0)">' +
-                            '<span class="fa fa-upload"></span>' +
+                            '<span class="fa fa-upload"/>' +
                         '</a>' +
                     '</div>' +
                 '</div>';
diff --git a/client/galaxy/scripts/utils/deferred.js b/client/galaxy/scripts/utils/deferred.js
index dc9ef33b3b0..0fd19f6371d 100644
--- a/client/galaxy/scripts/utils/deferred.js
+++ b/client/galaxy/scripts/utils/deferred.js
@@ -23,13 +23,13 @@ return Backbone.Model.extend({
         var process = $.Deferred();
         process.promise().always(function() {
             delete self.active[ id ];
-            has_deferred && console.debug( 'Deferred::execute() - ' + this.state() + ' ' + id );
+            has_deferred && Galaxy.emit.debug( 'deferred::execute()', this.state().charAt(0).toUpperCase() + this.state().slice(1) + ' ' + id );
         });
 
         // deferred queue
         $.when( this.last ).always(function() {
             if ( self.active[ id ] ) {
-                has_deferred && console.debug( 'Deferred::execute() - running ' + id );
+                has_deferred && Galaxy.emit.debug( 'deferred::execute()', 'Running ' + id );
                 callback( process );
                 !has_deferred && process.resolve();
             } else {
@@ -42,7 +42,7 @@ return Backbone.Model.extend({
     /** Resets the promise queue. All currently queued but unexecuted callbacks/promises will be rejected.
     */
     reset: function() {
-        console.debug('Deferred::execute() - reset');
+        Galaxy.emit.debug('deferred::execute()', 'Reset');
         for ( var i in this.active ) {
             this.active[ i ] = false;
         }
diff --git a/client/galaxy/scripts/utils/uploadbox.js b/client/galaxy/scripts/utils/uploadbox.js
index d80c8f0465d..d87ba93c2a2 100755
--- a/client/galaxy/scripts/utils/uploadbox.js
+++ b/client/galaxy/scripts/utils/uploadbox.js
@@ -97,8 +97,7 @@
         }, false);
 
         // send request
-        console.debug('uploadbox::uploadpost() - Posting following data:');
-        console.debug(cnf);
+        Galaxy.emit.debug('uploadbox::uploadpost()', 'Posting following data.', cnf);
         xhr.send(form);
     }
 
diff --git a/client/galaxy/style/less/base.less b/client/galaxy/style/less/base.less
index e7f1bdc6719..23c58b5dcec 100644
--- a/client/galaxy/style/less/base.less
+++ b/client/galaxy/style/less/base.less
@@ -211,7 +211,7 @@ body.has-message-box.has-inactivity-box {
     height: @panel_footer_height;
     line-height: @panel_footer_height;
     width: 100%;
-    z-index: 1000; // Above #DD-helper
+    z-index: 1000; // Above #dd-helper
     border-top: solid @layout-border-color 1px;
     background: @navbar-default-bg;
 
@@ -328,7 +328,7 @@ div.unified-panel-body-background {
 }
 
 // Used for dragging panels, popup menus, to deal with capturing clicks in iframes
-#DD-helper {
+#dd-helper {
     background: white;
     opacity: 0;
     z-index: 900; // Bootstrap elements start at 1000
@@ -1230,7 +1230,7 @@ a.action-button {
         text-decoration: none;
     }
 
-    .label, > label {
+    .menubutton-label, > label {
         position: relative;
         display: inline-block;
         border-right: none;
@@ -1243,7 +1243,7 @@ a.action-button {
         text-overflow: ellipsis;
     }
 
-    &.popup .label {
+    &.popup .menubutton-label {
         border-right: solid @btn-default-border 1px;
         padding-right: 6px;
     }
diff --git a/client/galaxy/style/less/ui.less b/client/galaxy/style/less/ui.less
index 54e1222e359..40579eebaf5 100644
--- a/client/galaxy/style/less/ui.less
+++ b/client/galaxy/style/less/ui.less
@@ -19,6 +19,14 @@
   transition: none !important;
 }
 
+.fa-rotate-45 {
+    -webkit-transform: rotate(45deg);
+    -moz-transform: rotate(45deg);
+    -ms-transform: rotate(45deg);
+    -o-transform: rotate(45deg);
+    transform: rotate(45deg);
+}
+
 // default margins
 @ui-margin-vertical: 5px;
 @ui-margin-horizontal: 5px;
@@ -566,10 +574,13 @@
 
 .ui-select {
     position: relative;
-    .button {
+    .icon-dropdown {
         position: absolute;
-        top: 5px;
-        right: 5px;
+        top: 8px;
+        right: 8px;
+    }
+    .icon-resize {
+        display: none;
     }
     select {
         position: relative;
@@ -601,8 +612,22 @@
 }
 
 .ui-select-multiple {
+    .icon-resize {
+        display: block;
+        position: absolute;
+        bottom: 0px;
+        right: 0px;
+        width: 20px;
+        height: 20px;
+        cursor: row-resize;
+        i {
+            position: absolute;
+            right: 3px;
+            bottom: 2px;
+        }
+    }
     select {
-        height: 80px !important;
+        height: 80px;
         .box-shadow(inset 0 1px 1px rgba(0,0,0,.075));
     }
 }
diff --git a/client/galaxy/style/less/upload.less b/client/galaxy/style/less/upload.less
index 7c2e73d217e..54049627fdd 100644
--- a/client/galaxy/style/less/upload.less
+++ b/client/galaxy/style/less/upload.less
@@ -8,6 +8,7 @@
     border-radius: @border-radius-base;
     .progress {
         height: 21px;
+        margin: 0px;
     }
     .progress-bar-danger {
         background: @state-danger-bg;
@@ -25,13 +26,12 @@
         -o-transition: none;
         transition: none;
     }
-    .label {
+    .panel-header-button {
         position: absolute;
-        top: 2px;
-        width: inherit;
-        text-align: center;
-        line-height: 19px;
+        top: 4px;
+        right: 8px;
         font-size: 1.2em;
+        padding: 0px;
     }
 }
 
diff --git a/config/plugins/visualizations/charts/static/build-app.js b/config/plugins/visualizations/charts/static/build-app.js
index 7128dd58814..9377d68b93e 100644
--- a/config/plugins/visualizations/charts/static/build-app.js
+++ b/config/plugins/visualizations/charts/static/build-app.js
@@ -1 +1 @@
-define("mvc/ui/ui-modal",[],function(){var e=Backbone.View.extend({elMain:"body",optionsDefault:{title:"ui-modal",body:"",backdrop:!0,height:null,width:null,closing_events:!1,closing_callback:null,title_separator:!0},buttonList:{},initialize:function(e){e&&this._create(e)},show:function(e){this.initialize(e),this.options.height?(this.$body.css("height",this.options.height),this.$body.css("overflow","hidden")):this.$body.css("max-height",$(window).height()/2),this.options.width&&this.$dialog.css("width",this.options.width),this.visible?this.$el.show():this.$el.fadeIn("fast"),this.visible=!0},hide:function(){this.visible=!1,this.$el.fadeOut("fast"),this.options.closing_callback&&this.options.closing_callback()},enableButton:function(e){var t=this.buttonList[e];this.$buttons.find("#"+t).prop("disabled",!1)},disableButton:function(e){var t=this.buttonList[e];this.$buttons.find("#"+t).prop("disabled",!0)},showButton:function(e){var t=this.buttonList[e];this.$buttons.find("#"+t).show()},hideButton:function(e){var t=this.buttonList[e];this.$buttons.find("#"+t).hide()},getButton:function(e){var t=this.buttonList[e];return this.$buttons.find("#"+t)},scrollTop:function(){return this.$body.scrollTop()},_create:function(e){var t=this;if(this.options=_.defaults(e,this.optionsDefault),"progress"==this.options.body&&(this.options.body=$('<div class="progress progress-striped active"><div class="progress-bar progress-bar-info" style="width:100%"></div></div>')),this.$el&&(this.$el.remove(),$(document).off("keyup.ui-modal")),this.setElement(this._template(this.options.title)),this.$dialog=this.$el.find(".modal-dialog"),this.$body=this.$el.find(".modal-body"),this.$footer=this.$el.find(".modal-footer"),this.$buttons=this.$el.find(".buttons"),this.$backdrop=this.$el.find(".modal-backdrop"),this.$body.html(this.options.body),this.options.backdrop||this.$backdrop.removeClass("in"),this.options.buttons){this.buttonList={};var n=0;$.each(this.options.buttons,function(e,r){var i="button-"+n++;t.$buttons.append($('<button id="'+i+'"></button>').text(e).click(r)).append(" "),t.buttonList[e]=i})}else this.$footer.hide();$(this.elMain).append($(this.el)),this.options.closing_events&&($(document).on("keyup.ui-modal",function(e){27==e.keyCode&&t.hide()}),this.$el.find(".modal-backdrop").on("click",function(){t.hide()})),this.options.title_separator||this.$(".modal-header").css({border:"none","padding-bottom":"0px"})},_template:function(e){return'<div class="ui-modal modal"><div class="modal-backdrop fade in" style="z-index: -1;"></div><div class="modal-dialog"><div class="modal-content"><div class="modal-header"><button type="button" class="close" style="display: none;">&times;</button><h4 class="title">'+e+'</h4></div><div class="modal-body" style="position: static;"></div><div class="modal-footer"><div class="buttons" style="float: right;"></div></div></div</div></div>'}});return{View:e}}),define("utils/utils",[],function(){function e(t,n){for(var r in t){var i=t[r];i&&"object"==typeof i&&(n(i),e(i,n))}}function t(e){return/^[\],:{}\s]*$/.test(e.replace(/\\["\\\/bfnrtu]/g,"@").replace(/"[^"\\\n\r]*"|true|false|null|-?\d+(?:\.\d*)?(?:[eE][+\-]?\d+)?/g,"]").replace(/(?:^|:|,)(?:\s*\[)+/g,""))}function n(e){return $("<div/>").text(e).html()}function r(e){if(e instanceof Array||(e=[e]),0===e.length)return!1;for(var t in e)if(["__null__","__undefined__",null,void 0].indexOf(e[t])>-1)return!1;return!0}function i(e){var e=e.toString();if(e){e=e.replace(/,/g,", ");var t=e.lastIndexOf(", ");return-1!=t&&(e=e.substr(0,t)+" or "+e.substr(t+1)),e}return""}function s(e){top.__utils__get__=top.__utils__get__||{},e.cache&&top.__utils__get__[e.url]?(e.success&&e.success(top.__utils__get__[e.url]),console.debug("utils.js::get() - Fetching from cache ["+e.url+"].")):o({url:e.url,data:e.data,success:function(t){top.__utils__get__[e.url]=t,e.success&&e.success(t)},error:function(t){e.error&&e.error(t)}})}function o(e){var t={contentType:"application/json",type:e.type||"GET",data:e.data||{},url:e.url};"GET"==t.type||"DELETE"==t.type?(t.url+=-1==t.url.indexOf("?")?"?":"&",t.url=t.url+$.param(t.data,!0),t.data=null):(t.dataType="json",t.url=t.url,t.data=JSON.stringify(t.data)),$.ajax(t).done(function(t){if("string"==typeof t)try{t=t.replace("Infinity,",'"Infinity",'),t=jQuery.parseJSON(t)}catch(n){console.debug(n)}e.success&&e.success(t)}).fail(function(t){var n=null;try{n=jQuery.parseJSON(t.responseText)}catch(r){n=t.responseText}e.error&&e.error(n,t)})}function u(e,t){var n=$('<div class="'+e+'"></div>');n.appendTo(":eq(0)");var r=n.css(t);return n.remove(),r}function a(e){$('link[href^="'+e+'"]').length||$('<link href="'+galaxy_config.root+e+'" rel="stylesheet">').appendTo("head")}function f(e,t){return e?_.defaults(e,t):t}function l(e,t){for(var n=1,r=0;t>r;r++)n*=10;return Math.round(e*n)/n}function c(e,t,n){n=void 0!==n?n:1;var r="";if(e>=g)e/=g,r="TB";else if(e>=m)e/=m,r="GB";else if(e>=v)e/=v,r="MB";else if(e>=d)e/=d,r="KB";else{if(!(e>0))return t?"0 b":"<strong>-</strong>";r="b"}var i="b"==r?e:l(e,n);return t?i+" "+r:"<strong>"+i+"</strong> "+r}function h(){return top.__utils__uid__=top.__utils__uid__||0,"uid-"+top.__utils__uid__++}function p(){var e=new Date,t=(e.getHours()<10?"0":"")+e.getHours(),n=(e.getMinutes()<10?"0":"")+e.getMinutes();return datetime=e.getDate()+"/"+(e.getMonth()+1)+"/"+e.getFullYear()+", "+t+":"+n}var d=1024,v=d*d,m=v*d,g=m*d;return{cssLoadFile:a,cssGetAttribute:u,get:s,merge:f,bytesToString:c,uid:h,time:p,request:o,sanitize:n,textify:i,validate:r,deepeach:e,isJSON:t}}),define("mvc/ui/ui-portlet",["utils/utils"],function(e){var t=Backbone.View.extend({visible:!1,optionsDefault:{id:e.uid(),title:"",icon:"",buttons:null,body:null,scrollable:!0,nopadding:!1,operations:null,placement:"bottom",cls:"ui-portlet",operations_flt:"right"},$title:null,$content:null,$buttons:null,$operations:null,$header:null,initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.$content=this.$el.find(".content"),this.$title=this.$el.find(".portlet-title-text"),this.$header=this.$el.find(".portlet-header");var n=this.$el.find(".portlet-content");if(this.options.nopadding&&(n.css("padding","0px"),this.$content.css("padding","0px")),this.$buttons=$(this.el).find(".buttons"),this.options.buttons){var r=this;$.each(this.options.buttons,function(e,t){t.$el.prop("id",e),r.$buttons.append(t.$el)})}else this.$buttons.remove();if(this.$operations=$(this.el).find(".portlet-operations"),this.options.operations){var r=this;$.each(this.options.operations,function(e,t){t.$el.prop("id",e),r.$operations.append(t.$el)})}this.options.body&&this.append(this.options.body)},append:function(e){this.$content.append(e)},empty:function(){this.$content.empty()},content:function(){return this.$content},show:function(){this.$el.fadeIn("fast"),this.visible=!0},hide:function(){this.$el.fadeOut("fast"),this.visible=!1},enableButton:function(e){this.$buttons.find("#"+e).prop("disabled",!1)},disableButton:function(e){this.$buttons.find("#"+e).prop("disabled",!0)},hideOperation:function(e){this.$operations.find("#"+e).hide()},showOperation:function(e){this.$operations.find("#"+e).show()},setOperation:function(e,t){var n=this.$operations.find("#"+e);n.off("click"),n.on("click",t)},title:function(e){var t=this.$title;return e&&t.html(e),t.html()},disable:function(){this.$(".portlet-backdrop").show()},enable:function(){this.$(".portlet-backdrop").hide()},_template:function(e){var t='<div id="'+e.id+'" class="'+e.cls+'">';return e.title&&(t+='<div class="portlet-header"><div class="portlet-operations" style="float: '+e.operations_flt+';"></div><div class="portlet-title">',e.icon&&(t+='<i class="icon fa '+e.icon+'">&nbsp;</i>'),t+='<span class="portlet-title-text">'+e.title+"</span></div></div>"),t+='<div class="portlet-content">',"top"==e.placement&&(t+='<div class="buttons"></div>'),t+='<div class="content"></div>',"bottom"==e.placement&&(t+='<div class="buttons"></div>'),t+='</div><div class="portlet-backdrop"/></div>'}});return{View:t}}),define("mvc/ui/ui-buttons",["utils/utils"],function(e){var t=Backbone.View.extend({initialize:function(t){this.options=e.merge(t,{id:e.uid(),title:"",floating:"right",icon:"",cls:"ui-button btn btn-default",cls_wait:"btn btn-info"}),this.setElement(this._template(this.options));var n=this;$(this.el).on("click",function(){$(".tooltip").hide(),t.onclick&&!n.disabled&&t.onclick()}),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},disable:function(){this.$el.addClass("disabled"),this.disabled=!0},enable:function(){this.$el.removeClass("disabled"),this.disabled=!1},wait:function(){this.$el.removeClass(this.options.cls).addClass(this.options.cls_wait).prop("disabled",!0),this.$(".icon").removeClass(this.options.icon).addClass("fa-spinner fa-spin"),this.$(".title").html("Sending...")},unwait:function(){this.$el.removeClass(this.options.cls_wait).addClass(this.options.cls).prop("disabled",!1),this.$(".icon").removeClass("fa-spinner fa-spin").addClass(this.options.icon),this.$(".title").html(this.options.title)},_template:function(e){var t='<button id="'+e.id+'" type="submit" style="float: '+e.floating+';" type="button" class="'+e.cls+'">';return e.icon&&(t+='<i class="icon fa '+e.icon+'"/>&nbsp;'),t+='<span class="title">'+e.title+"</span></button>"}}),n=t.extend({initialize:function(e){t.prototype.initialize.call(this,e)},_template:function(e){return'<a id="'+e.id+'" class="'+e.cls+'" href="'+(e.href||"javascript:void(0)")+'" title="'+e.title+'" target="'+(e.target||"_top")+'"><span class="'+e.icon+'"/></a>'}}),r=Backbone.View.extend({initialize:function(t){this.options=e.merge(t,{title:"Select/Unselect all",icons:["fa fa-square-o","fa fa-minus-square-o","fa fa-check-square-o"],value:0}),this.setElement(this._template()),this.$title=this.$(".title"),this.$icon=this.$(".icon"),this.value(this.options.value),this.$title.html(this.options.title);var n=this;this.$el.on("click",function(){n.current=0===n.current&&2||0,n.value(n.current),n.options.onclick&&n.options.onclick()})},value:function(e,t){return void 0!==e&&(t&&0!==e&&(e=e!==t&&1||2),this.current=e,this.$icon.removeClass().addClass("icon").addClass(this.options.icons[e]),this.options.onchange&&this.options.onchange(e)),this.current},_template:function(){return'<div class="ui-button-check" ><span class="icon"/><span class="title"/></div>'}}),i=Backbone.View.extend({initialize:function(t){this.options=e.merge(t,{id:e.uid(),title:"",floating:"right",cls:"ui-button-icon",icon:"",tooltip:"",onclick:null}),this.setElement(this._template(this.options)),this.$button=this.$el.find(".button");var n=this;$(this.el).on("click",function(){$(".tooltip").hide(),t.onclick&&!n.disabled&&t.onclick()}),this.$button.tooltip({title:t.tooltip,placement:"bottom"})},disable:function(){this.$button.addClass("disabled"),this.disabled=!0},enable:function(){this.$button.removeClass("disabled"),this.disabled=!1},setIcon:function(e){this.$("i").removeClass(this.options.icon).addClass(e),this.options.icon=e},_template:function(e){var t="";e.title&&(t="width: auto;");var n='<div id="'+e.id+'" style="float: '+e.floating+"; "+t+'" class="'+e.cls+'"><div class="button">';return n+=e.title?'<i class="icon fa '+e.icon+'"/>&nbsp;<span class="title">'+e.title+"</span>":'<i class="icon fa '+e.icon+'"/>',n+="</div></div>"}}),s=Backbone.View.extend({$menu:null,initialize:function(t){this.options=e.merge(t,{id:"",title:"",floating:"right",pull:"right",icon:null,onclick:null,cls:"ui-button-icon ui-button-menu",tooltip:"",target:"",href:"",onunload:null,visible:!0,tag:""}),this.setElement($(this._template(this.options)));var n=$(this.el).find(".root"),r=this;n.on("click",function(e){$(".tooltip").hide(),e.preventDefault(),r.options.onclick&&r.options.onclick()}),this.options.visible||this.hide(),n.tooltip({title:t.tooltip,placement:"bottom"})},show:function(){$(this.el).show()},hide:function(){$(this.el).hide()},addMenu:function(t){var n={title:"",target:"",href:"",onclick:null,divider:!1,icon:null,cls:"button-menu btn-group"};n=e.merge(t,n),this.$menu||($(this.el).append(this._templateMenu()),this.$menu=$(this.el).find(".menu"));var r=$(this._templateMenuItem(n));r.on("click",function(e){e.preventDefault(),n.onclick&&n.onclick()}),this.$menu.append(r),n.divider&&this.$menu.append($(this._templateDivider()))},_templateMenuItem:function(e){var t='<li><a class="dropdown-item" href="'+e.href+'" target="'+e.target+'">';return e.icon&&(t+='<i class="fa '+e.icon+'"/>'),t+=" "+e.title+"</a></li>"},_templateMenu:function(){return'<ul class="menu dropdown-menu pull-'+this.options.pull+'" role="menu"/>'},_templateDivider:function(){return'<li class="divider"/>'},_template:function(e){var t="",n="";e.title?t="width: auto;":n="margin: 0px;";var r='<div id="'+e.id+'" style="float: '+e.floating+"; "+t+'" class="dropdown '+e.cls+'"><div class="root button dropdown-toggle" data-toggle="dropdown" style="'+n+'"><i class="icon fa '+e.icon+'"/>';return e.title&&(r+='&nbsp;<span class="title">'+e.title+"</span>"),r+="</div></div>"}});return{ButtonDefault:t,ButtonLink:n,ButtonIcon:i,ButtonCheck:r,ButtonMenu:s}}),define("mvc/ui/ui-select-default",["utils/utils","mvc/ui/ui-buttons"],function(e,t){var n=Backbone.View.extend({optionsDefault:{id:e.uid(),cls:"ui-select",error_text:"No options available",empty_text:"Nothing selected",visible:!0,wait:!1,multiple:!1,searchable:!0,optional:!1},initialize:function(n){var r=this;this.options=e.merge(n,this.optionsDefault),this.setElement(this._template(this.options)),this.$select=this.$el.find(".select"),this.$icon=this.$el.find(".icon"),this.$button=this.$el.find(".button"),this.options.multiple&&(this.options.searchable&&(this.all_button=new t.ButtonCheck({onclick:function(){var e=[];0!==r.all_button.value()&&(e=r._availableOptions()),r.value(e),r.trigger("change")}}),this.$el.prepend(this.all_button.$el)),this.$el.addClass("ui-select-multiple"),this.$select.prop("multiple",!0),this.$button.remove()),this.update(this.options.data),void 0!==this.options.value&&this.value(this.options.value),this.options.visible||this.hide(),this.options.wait?this.wait():this.show(),this.$select.on("change",function(){r.trigger("change")}),this.on("change",function(){r.options.onchange&&r.options.onchange(this.value())})},value:function(e){void 0!==e&&(null===e&&(e="__null__"),(this.exists(e)||this.options.multiple)&&(this.$select.val(e),this.$select.select2&&this.$select.select2("val",e)));var t=this._getValue();return this.all_button&&this.all_button.value($.isArray(t)&&t.length||0,this._size()),t},first:function(){var e=this.$select.find("option").first();return e.length>0?e.val():null},text:function(){return this.$select.find("option:selected").text()},show:function(){this.unwait(),this.$select.show(),this.$el.show()},hide:function(){this.$el.hide()},wait:function(){this.$icon.removeClass(),this.$icon.addClass("fa fa-spinner fa-spin")},unwait:function(){this.$icon.removeClass(),this.$icon.addClass("fa fa-caret-down")},disabled:function(){return this.$select.is(":disabled")},enable:function(){this.$select.prop("disabled",!1)},disable:function(){this.$select.prop("disabled",!0)},update:function(e){var t=this._getValue();this.$select.find("option").remove(),!this.options.multiple&&this.options.optional&&this.$select.append(this._templateOption({value:"__null__",label:this.options.empty_text}));for(var n in e)this.$select.append(this._templateOption(e[n]));0==this._size()?(this.disable(),this.$select.append(this._templateOption({value:"__null__",label:this.options.error_text}))):this.enable(),this.options.searchable&&(this.$select.select2("destroy"),this.$select.select2(),this.$(".select2-container .select2-search input").off("blur")),this.value(t),null!==this._getValue()||this.options.multiple&&this.options.optional||this.value(this.first())},setOnChange:function(e){this.options.onchange=e},exists:function(e){return this.$select.find('option[value="'+e+'"]').length>0},_getValue:function(){var t=this.$select.val();return e.validate(t)?t:null},_availableOptions:function(){var e=[];return this.$select.find("option").each(function(t,n){e.push($(n).attr("value"))}),e},_size:function(){return this.$select.find("option").length},_templateOption:function(e){return'<option value="'+e.value+'">'+e.label+"</option>"},_template:function(e){return'<div id="'+e.id+'" class="'+e.cls+'"><select id="'+e.id+'_select" class="select"/><div class="button"><i class="icon"/></div></div>'}});return{View:n}}),define("mvc/ui/ui-slider",["utils/utils"],function(e){var t=Backbone.View.extend({optionsDefault:{id:e.uid(),min:null,max:null,step:null,precise:!1,split:1e4},initialize:function(t){var n=this;this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.useslider=null!==this.options.max&&null!==this.options.min&&this.options.max>this.options.min,null===this.options.step&&(this.options.step=1,this.options.precise&&this.useslider&&(this.options.step=(this.options.max-this.options.min)/this.options.split)),this.useslider?(this.$slider=this.$el.find("#slider"),this.$slider.slider(this.options),this.$slider.on("slide",function(e,t){n.value(t.value)})):this.$el.find(".ui-form-slider-text").css("width","100%"),this.$text=this.$el.find("#text"),void 0!==this.options.value&&this.value(this.options.value),this.$text.on("change",function(){n.value($(this).val())});var r=[];this.$text.on("keyup",function(e){r[e.which]=!1,n.options.onchange&&n.options.onchange($(this).val())}),this.$text.on("keydown",function(e){var t=e.which;r[t]=!0,8==t||9==t||13==t||37==t||39==t||t>=48&&57>=t||t>=96&&105>=t||(190==t||110==t)&&-1==$(this).val().indexOf(".")&&n.options.precise||(189==t||109==t)&&-1==$(this).val().indexOf("-")||r[91]||r[17]||event.preventDefault()})},value:function(e){return void 0!==e&&(null!==e&&""!==e&&(isNaN(e)&&(e=0),null!==this.options.max&&(e=Math.min(e,this.options.max)),null!==this.options.min&&(e=Math.max(e,this.options.min))),this.$slider&&this.$slider.slider("value",e),this.$text.val(e),this.options.onchange&&this.options.onchange(e)),this.$text.val()},_template:function(e){return'<div id="'+e.id+'" class="ui-form-slider"><input id="text" type="text" class="ui-form-slider-text"/><div id="slider" class="ui-form-slider-element"/></div>'}});return{View:t}}),define("mvc/ui/ui-options",["utils/utils","mvc/ui/ui-buttons"],function(e,t){var n=Backbone.View.extend({initialize:function(n){var r=this;this.options=e.merge(n,{visible:!0,data:[],id:e.uid(),error_text:"No options available.",wait_text:"Please wait...",multiple:!1}),this.setElement('<div class="ui-options"/>'),this.$message=$("<div/>"),this.$options=$(this._template(n)),this.$menu=$('<div class="ui-options-menu"/>'),this.$el.append(this.$message),this.$el.append(this.$menu),this.$el.append(this.$options),this.options.multiple&&(this.all_button=new t.ButtonCheck({onclick:function(){r.$("input").prop("checked",0!==r.all_button.value()),r.trigger("change")}}),this.$menu.append(this.all_button.$el)),this.options.visible||this.$el.hide(),this.update(this.options.data),void 0!==this.options.value&&this.value(this.options.value),this.on("change",function(){this.options.onchange&&this.options.onchange(this.value())})},update:function(e){var t=this._getValue();if(this.$options.empty(),this._templateOptions)this.$options.append(this._templateOptions(e));else for(var n in e){var r=$(this._templateOption(e[n]));r.addClass("ui-option"),r.tooltip({title:e[n].tooltip,placement:"bottom"}),this.$options.append(r)}var i=this;this.$("input").on("change",function(){i.value(i._getValue()),i.trigger("change")}),this.value(t),this.unwait()},value:function(e){if(void 0!==e&&(this.$("input").prop("checked",!1),null!==e)){e instanceof Array||(e=[e]);for(var t in e)this.$('input[value="'+e[t]+'"]').first().prop("checked",!0)}var n=this._getValue();if(this.all_button){var r=n;r=r instanceof Array?r.length:0,this.all_button.value(r,this._size())}return n},exists:function(e){if(void 0!==e){e instanceof Array||(e=[e]);for(var t in e)if(this.$('input[value="'+e[t]+'"]').length>0)return!0}return!1},first:function(){var e=this.$("input").first();return e.length>0?e.val():null},wait:function(){0==this._size()&&(this._messageShow(this.options.wait_text,"info"),this.$options.hide(),this.$menu.hide())},unwait:function(){var e=this._size();0==e?(this._messageShow(this.options.error_text,"danger"),this.$options.hide(),this.$menu.hide()):(this._messageHide(),this.$options.css("display","inline-block"),this.$menu.show())},_getValue:function(){var t=[];return this.$(":checked").each(function(){t.push($(this).val())}),e.validate(t)?this.options.multiple?t:t[0]:null},_size:function(){return this.$(".ui-option").length},_messageShow:function(e,t){this.$message.show(),this.$message.removeClass(),this.$message.addClass("ui-message alert alert-"+t),this.$message.html(e)},_messageHide:function(){this.$message.hide()},_template:function(){return'<div class="ui-options-list"/>'}}),r=n.extend({_templateOption:function(t){var n=e.uid();return'<div class="ui-option"><input id="'+n+'" type="'+this.options.type+'" name="'+this.options.id+'" value="'+t.value+'"/><label class="ui-options-label" for="'+n+'">'+t.label+"</label></div>"}}),i={};i.View=r.extend({initialize:function(e){e.type="radio",r.prototype.initialize.call(this,e)}});var s={};s.View=r.extend({initialize:function(e){e.multiple=!0,e.type="checkbox",r.prototype.initialize.call(this,e)}});var o={};return o.View=n.extend({initialize:function(e){n.prototype.initialize.call(this,e)},value:function(e){return void 0!==e&&(this.$("input").prop("checked",!1),this.$("label").removeClass("active"),this.$('[value="'+e+'"]').prop("checked",!0).closest("label").addClass("active")),this._getValue()},_templateOption:function(e){var t="fa "+e.icon;e.label||(t+=" no-padding");var n='<label class="btn btn-default">';return e.icon&&(n+='<i class="'+t+'"/>'),n+='<input type="radio" name="'+this.options.id+'" value="'+e.value+'"/>',e.label&&(n+=e.label),n+="</label>"},_template:function(){return'<div class="btn-group ui-radiobutton" data-toggle="buttons"/>'}}),{Base:n,BaseIcons:r,Radio:i,RadioButton:o,Checkbox:s}}),define("mvc/ui/ui-drilldown",["utils/utils","mvc/ui/ui-options"],function(e,t){var n=t.BaseIcons.extend({initialize:function(e){e.type=e.display||"checkbox",e.multiple="checkbox"==e.display,t.BaseIcons.prototype.initialize.call(this,e),this.initial=!0},value:function(e){var n=t.BaseIcons.prototype.value.call(this,e);if(this.initial&&null!==n&&this.header_index){this.initial=!1;var r=n;$.isArray(r)||(r=[r]);for(var i in r){var s=this.header_index[r[i]];for(var o in s)this._setState(s[o],!0)}}return n},_setState:function(e,t){var n=this.$(".button-"+e),r=this.$(".subgroup-"+e);n.data("is_expanded",t),t?(r.fadeIn("fast"),n.removeClass("toggle-expand"),n.addClass("toggle")):(r.hide(),n.removeClass("toggle"),n.addClass("toggle-expand"))},_templateOptions:function(t){function n(e,t){var n=e.find(".button-"+t);n.on("click",function(){s._setState(t,!n.data("is_expanded"))})}function r(t,o,u){u=u||[];for(i in o){var f=o[i],l=f.options.length>0,h=u.slice(0);s.header_index[f.value]=h.slice(0);var p=$("<div/>");if(l){var v=e.uid(),m=$('<span class="button-'+v+' ui-drilldown-button form-toggle icon-button toggle-expand"/>'),g=$('<div class="subgroup-'+v+'" style="display: none; margin-left: 25px;"/>');h.push(v);var y=$("<div/>");y.append(m),y.append(s._templateOption({label:f.name,value:f.value})),p.append(y),r(g,f.options,h),p.append(g),n(p,v)}else p.append(s._templateOption({label:f.name,value:f.value}));t.append(p)}}var s=this;this.header_index={};var o=$("<div/>");return r(o,t),o},_template:function(e){return'<div class="ui-options-list drilldown-container" id="'+e.id+'"/>'}});return{View:n}}),define("mvc/ui/ui-misc",["utils/utils","mvc/ui/ui-select-default","mvc/ui/ui-slider","mvc/ui/ui-options","mvc/ui/ui-drilldown","mvc/ui/ui-buttons","mvc/ui/ui-modal"],function(e,t,n,r,i,s,o){var u=Backbone.View.extend({initialize:function(t){this.options=e.merge(t,{url:"",cls:""}),this.setElement(this._template(this.options))},_template:function(e){return'<img class="ui-image '+e.cls+'" src="'+e.url+'"/>'}}),a=Backbone.View.extend({initialize:function(t){this.options=e.merge(t,{title:"",cls:""}),this.setElement(this._template(this.options))},title:function(e){this.$el.html(e)},value:function(){return options.title},_template:function(e){return'<label class="ui-label '+e.cls+'">'+e.title+"</label>"}}),f=Backbone.View.extend({initialize:function(t){this.options=e.merge(t,{floating:"right",icon:"",tooltip:"",placement:"bottom",title:"",cls:""}),this.setElement(this._template(this.options)),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},_template:function(e){return'<div><span class="fa '+e.icon+'" class="ui-icon"/>&nbsp;'+e.title+"</div>"}}),l=Backbone.View.extend({initialize:function(t){this.options=e.merge(t,{title:"",cls:""}),this.setElement(this._template(this.options)),$(this.el).on("click",t.onclick)},_template:function(e){return'<div><a href="javascript:void(0)" class="ui-anchor '+e.cls+'">'+e.title+"</a></div>"}}),c=Backbone.View.extend({initialize:function(t){this.options=e.merge(t,{message:null,status:"info",cls:"",persistent:!1}),this.setElement('<div class="'+this.options.cls+'"/>'),this.options.message&&this.update(this.options)},update:function(t){if(this.options=e.merge(t,this.options),""!=t.message){if(this.$el.html(this._template(this.options)),this.$el.fadeIn(),this.timeout&&window.clearTimeout(this.timeout),!t.persistent){var n=this;this.timeout=window.setTimeout(function(){n.$el.is(":visible")?n.$el.fadeOut():n.$el.hide()},3e3)}}else this.$el.fadeOut()},_template:function(e){var t="ui-message alert alert-"+e.status;return e.large&&(t=("success"==e.status&&"done"||"danger"==e.status&&"error"||e.status)+"messagelarge"),'<div class="'+t+'" >'+e.message+"</div>"}}),h=Backbone.View.extend({initialize:function(t){this.options=e.merge(t,{onclick:null,searchword:""}),this.setElement(this._template(this.options));var n=this;this.options.onclick&&this.$el.on("submit",function(){var e=n.$el.find("#search");n.options.onclick(e.val())})},_template:function(e){return'<div class="ui-search"><form onsubmit="return false;"><input id="search" class="form-control input-sm" type="text" name="search" placeholder="Search..." value="'+e.searchword+'"><button type="submit" class="btn search-btn"><i class="fa fa-search"></i></button></form></div>'}}),p=Backbone.View.extend({initialize:function(t){this.options=e.merge(t,{type:"text",placeholder:"",disabled:!1,visible:!0,cls:"",area:!1}),this.setElement(this._template(this.options)),void 0!==this.options.value&&this.value(this.options.value),this.options.disabled&&this.$el.prop("disabled",!0),this.options.visible||this.$el.hide();var n=this;this.$el.on("input",function(){n.options.onchange&&n.options.onchange(n.$el.val())})},value:function(e){return void 0!==e&&this.$el.val(e),this.$el.val()},_template:function(e){return e.area?'<textarea id="'+e.id+'" class="ui-textarea '+e.cls+'"></textarea>':'<input id="'+e.id+'" type="'+e.type+'" value="'+e.value+'" placeholder="'+e.placeholder+'" class="ui-input '+e.cls+'">'}}),d=Backbone.View.extend({initialize:function(e){this.options=e,this.setElement(this._template(this.options)),void 0!==this.options.value&&this.value(this.options.value)},value:function(e){return void 0!==e&&this.$("hidden").val(e),this.$("hidden").val()},_template:function(e){var t='<div id="'+e.id+'" >';return e.info&&(t+="<div>"+e.info+"</div>"),t+='<hidden value="'+e.value+'"/></div>'}});return{Anchor:l,Button:s.ButtonDefault,ButtonIcon:s.ButtonIcon,ButtonCheck:s.ButtonCheck,ButtonMenu:s.ButtonMenu,ButtonLink:s.ButtonLink,Icon:f,Image:u,Input:p,Label:a,Message:c,Modal:o,RadioButton:r.RadioButton,Checkbox:r.Checkbox,Radio:r.Radio,Searchbox:h,Select:t,Hidden:d,Slider:n,Drilldown:i}}),define("plugin/library/jobs",["utils/utils"],function(e){return Backbone.Model.extend({initialize:function(t,n){this.app=t,this.options=e.merge(n,this.optionsDefault)},request:function(e,t,n,r,i){var s=this;e.state("wait","Requesting job results...");var o=e.get("dataset_id_job");o!=""?s._wait(e,r,i):s._submit(e,t,n,r,i)},cleanup:function(t){var n=this,r=t.get("dataset_id_job");r!=""&&(e.request({type:"PUT",url:config.root+"api/histories/none/contents/"+r,data:{deleted:!0},success:function(){n._refreshHdas()}}),t.set("dataset_id_job",""))},_submit:function(t,n,r,i,s){var o=this,u=t.id,a=t.get("type"),f=t.definition;data={tool_id:"charts",inputs:{input:{id:t.get("dataset_id"),src:"hda"},module:f.execute,columns:r,settings:n}},t.state("wait","Sending job request..."),e.request({type:"POST",url:config.root+"api/tools",data:data,success:function(e){if(!e.outputs||e.outputs.length==0)t.state("failed","Job submission failed. No response."),s&&s();else{o._refreshHdas();var n=e.outputs[0];t.state("wait","Your job has been queued. You may close the browser window. The job will run in the background."),t.set("dataset_id_job",n.id),o.app.storage.save(),o._wait(t,i,s)}},error:function(e){var n="";e&&e.message&&e.message.data&&e.message.data.input&&(n=e.message.data.input+"."),t.state("failed","This visualization requires the 'charts' tool. Please make sure it is installed. "+n),s&&s()}})},_wait:function(t,n,r){var i=this;e.request({type:"GET",url:config.root+"api/datasets/"+t.get("dataset_id_job"),data:{},success:function(e){var s=!1;switch(e.state){case"ok":t.state("wait","Job completed successfully..."),n&&n(e),s=!0;break;case"error":t.state("failed","Job has failed. Please check the history for details."),r&&r(e),s=!0;break;case"running":t.state("wait","Your job is running. You may close the browser window. The job will continue in the background.")}s||setTimeout(function(){i._wait(t,n,r)},i.app.config.get("query_timeout"))}})},_refreshHdas:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.refreshContents()}})}),define("plugin/library/datasets",["utils/utils"],function(e){return Backbone.Collection.extend({list:{},cache:{},initialize:function(t,n){this.app=t,this.options=e.merge(n,this.optionsDefault)},request:function(e){e.groups?this._get_blocks(e):this._get_dataset(e.id,e.success,e.error)},_get_blocks:function(e){function c(i){l._get(i,function(){var s=!1;for(var o in e.groups){destination_group=e.groups[o],source_group=i.groups[o],destination_group.values||(destination_group.values=[]),destination_group.values=destination_group.values.concat(source_group.values);if(source_group.values.length==0){s=!0;break}}if(++f<u&&!s){n&&n(parseInt(f/u*100));var l=i.start+r;i=$.extend(!0,a,{start:l}),c(i)}else t()})}var t=e.success,n=e.progress,r=this.app.config.get("query_limit"),i=e.start||0,s=i+e.query_limit||i+this.app.config.get("query_limit"),o=Math.abs(s-i);if(o<=0){console.debug("FAILED - Datasets::request() - Invalid query range.");return}var u=Math.ceil(o/r)||1,a=$.extend(!0,{},e),f=0,l=this,h=$.extend(!0,a,{start:i});this._get_dataset(e.id,function(){c(h)})},_get_dataset:function(t,n,r){var i=this.list[t];if(i){n(i);return}var s=this;e.request({type:"GET",url:config.root+"api/datasets/"+t,success:function(e){switch(e.state){case"error":r&&r(e);break;default:s.list[t]=e,n(e)}}})},_block_id:function(e,t){return e.id+"_"+e.start+"_"+e.start+this.app.config.get("query_limit")+"_"+t},_get:function(e,t){e.start=e.start||0;var n=[],r={},i=0;for(var s in e.groups){var o=e.groups[s];for(var u in o.columns){var a=o.columns[u].index,f=this._block_id(e,a);if(this.cache[f]||a==="auto"||a==="zero")continue;!r[a]&&a!==undefined&&(r[a]=i,n.push(a),i++)}}if(n.length==0){this._fill_from_cache(e),t(e);return}var l={dataset_id:e.id,start:e.start,columns:n},c=this;this._fetch(l,function(r){for(var i in r){var s=n[i],o=c._block_id(e,s);c.cache[o]=r[i]}c._fill_from_cache(e),t(e)})},_fill_from_cache:function(e){var t=e.start;console.debug("Datasets::_fill_from_cache() - Filling request from cache at "+t+".");var n=0;for(var r in e.groups){var i=e.groups[r];for(var s in i.columns){var o=i.columns[s],u=this._block_id(e,o.index),a=this.cache[u];a&&(n=Math.max(n,a.length))}}n==0&&console.debug("Datasets::_fill_from_cache() - Reached data range limit.");for(var r in e.groups){var i=e.groups[r];i.values=[];for(var f=0;f<n;f++)i.values[f]={x:parseInt(f)+t}}for(var r in e.groups){var i=e.groups[r];for(var s in i.columns){var o=i.columns[s];switch(o.index){case"auto":for(var f=0;f<n;f++){var l=i.values[f];l[s]=parseInt(f)+t}break;case"zero":for(var f=0;f<n;f++){var l=i.values[f];l[s]=0}break;default:var u=this._block_id(e,o.index),a=this.cache[u];for(var f=0;f<n;f++){var l=i.values[f],c=a[f];isNaN(c)&&!o.is_label&&!o.is_text&&(c=0),l[s]=c}}}}},_fetch:function(t,n){var r=t.start?t.start:0,i=this.app.config.get("query_limit"),s=0;t.columns&&(s=t.columns.length,console.debug("Datasets::_fetch() - Fetching "+s+" column(s) at "+r+".")),s==0&&console.debug("Datasets::_fetch() - No columns requested");var o="";for(var u in t.columns)o+=t.columns[u]+",";o=o.substring(0,o.length-1);var a=this;e.request({type:"GET",url:config.root+"api/datasets/"+t.dataset_id,data:{data_type:"raw_data",provider:"dataset-column",limit:i,offset:r,indeces:o},success:function(e){var t=new Array(s);for(var r=0;r<s;r++)t[r]=[];for(var r in e.data){var i=e.data[r];for(var o in i){var u=i[o];u!==undefined&&u!=2147483647&&t[o].push(u)}}console.debug("Datasets::_fetch() - Fetching complete."),n(t)}})}})}),define("plugin/models/group",[],function(){return Backbone.Model.extend({defaults:{key:"Data label",date:""},reset:function(){this.clear({silent:!0}).set(this.defaults),this.trigger("reset",this)}})}),define("plugin/models/groups",["plugin/models/group"],function(e){return Backbone.Collection.extend({model:e})}),define("plugin/models/chart",["plugin/models/groups"],function(e){return Backbone.Model.extend({defaults:{id:null,title:"",type:"",date:null,state:"",state_info:"",modified:!1,dataset_id:"",dataset_id_job:""},initialize:function(t){this.groups=new e,this.settings=new Backbone.Model},reset:function(){this.clear({silent:!0}).set(this.defaults),this.groups.reset(),this.settings.clear(),this.trigger("reset",this)},copy:function(e){var t=this;t.clear({silent:!0}).set(this.defaults),t.set(e.attributes),t.settings=e.settings.clone(),t.groups.reset(),e.groups.each(function(e){t.groups.add(e.clone())}),t.trigger("change",t)},state:function(e,t){this.set("state",e),this.set("state_info",t),this.trigger("set:state"),console.debug("Chart:state() - "+t+" ("+e+")")}})});var Visualization=Backbone.Model.extend({defaults:{config:{}},urlRoot:function(){var e="/api/visualizations";return window.galaxy_config&&galaxy_config.root?galaxy_config.root+e:e},initialize:function(e){_.isObject(e.config)&&_.isObject(this.defaults.config)&&_.defaults(e.config,this.defaults.config),this._setUpListeners()},_setUpListeners:function(){},set:function(e,t){if("config"===e){var n=this.get("config");_.isObject(n)&&(t=_.extend(_.clone(n),t))}return Backbone.Model.prototype.set.call(this,e,t),this},toString:function(){var e=this.get("id")||"";return this.get("title")&&(e+=":"+this.get("title")),"Visualization("+e+")"}}),VisualizationCollection=Backbone.Collection.extend({model:Visualization,url:function(){return galaxy_config.root+"api/visualizations"},initialize:function(e,t){t=t||{}},set:function(e,t){var n=this;e=_.map(e,function(e){var t=n.get(e.id);if(!t)return e;var r=t.toJSON();return _.extend(r,e),r}),Backbone.Collection.prototype.set.call(this,e,t)},toString:function(){return["VisualizationCollection(",[this.historyId,this.length].join(),")"].join("")}});define("mvc/visualization/visualization-model",function(){}),define("plugin/library/storage",["utils/utils","plugin/models/chart","plugin/models/group","mvc/visualization/visualization-model"],function(e,t,n){return Backbone.Model.extend({vis:null,initialize:function(e){this.app=e,this.chart=this.app.chart,this.options=this.app.options,this.id=this.options.id,this.vis=new Visualization({type:"charts",config:{dataset_id:this.options.config.dataset_id,chart_dict:{}}}),this.id&&(this.vis.id=this.id);var t=this.options.config.chart_dict;t&&(this.vis.get("config").chart_dict=t)},save:function(){var e=this.app.chart;this.vis.get("config").chart_dict={};var t=e.get("title");t!=""&&this.vis.set("title",t);var n={attributes:e.attributes,settings:e.settings.attributes,groups:[]};e.groups.each(function(e){n.groups.push(e.attributes)}),this.vis.get("config").chart_dict=n;var r=this;this.vis.save().fail(function(e,t,n){console.error(e,t,n)}).then(function(e){e&&e.id&&(r.id=e.id)})},load:function(){var e=this.vis.get("config").chart_dict;if(!e.attributes)return!1;var t=e.attributes.type;if(!t)return console.debug("Storage::load() - Chart type not provided. Invalid format."),!1;var r=this.app.types.get(t);if(!r)return console.debug("Storage::load() - Chart type not supported. Please re-configure the chart. Resetting chart."),!1;console.debug("Storage::load() - Loading chart type "+t+"."),this.chart.definition=r,this.chart.set(e.attributes),this.chart.state("ok","Loading saved visualization..."),this.chart.settings.set(e.settings);for(var i in e.groups)this.chart.groups.add(new n(e.groups[i]));return this.chart.set("modified",!1),!0}})}),define("utils/deferred",["utils/utils"],function(e){return Backbone.Model.extend({initialize:function(){this.active={},this.last=null},execute:function(t){var n=this,r=e.uid(),i=t.length>0;this.active[r]=!0;var s=$.Deferred();s.promise().always(function(){delete n.active[r],i&&console.debug("Deferred::execute() - "+this.state()+" "+r)}),$.when(this.last).always(function(){n.active[r]?(i&&console.debug("Deferred::execute() - running "+r),t(s),!i&&s.resolve()):s.reject()}),this.last=s.promise()},reset:function(){console.debug("Deferred::execute() - reset");for(var e in this.active)this.active[e]=!1},ready:function(){return $.isEmptyObject(this.active)}})}),define("plugin/views/viewport",["mvc/ui/ui-portlet","mvc/ui/ui-misc","utils/utils"],function(e,t,n){return Backbone.View.extend({container_list:[],canvas_list:[],initialize:function(e,t){this.app=e,this.chart=this.app.chart,this.options=n.merge(t,this.optionsDefault),this.setElement($(this._template())),this._fullscreen(this.$el,50);var r=$("body").css("overflow");this.$el.on("mouseover",function(){$("body").css("overflow","hidden")}).on("mouseout",function(){$("body").css("overflow",r)}),this._createContainer("div");var i=this;this.chart.on("redraw",function(){i.app.deferred.execute(function(e){i._draw(e,i.chart)})}),this.chart.on("set:state",function(){var e=i.$el.find("#info"),t=i.$el.find(".charts-viewport-container"),n=e.find("#icon");n.removeClass(),e.show(),e.find("#text").html(i.chart.get("state_info"));var r=i.chart.get("state");switch(r){case"ok":e.hide(),t.show();break;case"failed":n.addClass("icon fa fa-warning"),t.hide();break;default:n.addClass("icon fa fa-spinner fa-spin"),t.show()}})},show:function(){this.$el.show()},hide:function(){this.$el.hide()},_fullscreen:function(e,t){e.css("height",$(window).height()-t),$(window).resize(function(){e.css("height",$(window).height()-t)})},_createContainer:function(e,t){t=t||1;for(var n in this.container_list)this.container_list[n].remove();this.container_list=[],this.canvas_list=[];for(var n=0;n<t;n++){var r=$(this._templateContainer(e,parseInt(100/t)));this.$el.append(r),this.container_list[n]=r,this.canvas_list[n]=r.find(".charts-viewport-canvas").attr("id")}},_draw:function(e,t){var n=this,r=t.get("type");this.chart_definition=t.definition;var i=1;t.settings.get("use_panels")==="true"&&(i=t.groups.length),this._createContainer(this.chart_definition.tag,i),t.state("wait","Please wait...");if(!this.chart_definition.execute||this.chart_definition.execute&&t.get("modified"))this.app.jobs.cleanup(t),t.set("modified",!1);var 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t=e.models.line(),n=e.models.line(),r=e.models.axis(),i=e.models.axis(),s=e.models.axis(),o=e.models.axis(),u=e.models.legend(),a=d3.svg.brush(),f={top:30,right:30,bottom:30,left:60},l={top:0,right:30,bottom:20,left:60},c=e.utils.defaultColor(),h=null,p=null,d=100,v,m,g,y,b=!0,w=null,E=!0,S=function(e,t,n,r,i){return"<h3>"+e+"</h3>"+"<p>"+n+" at "+t+"</p>"},x="No Data Available.",T=d3.dispatch("tooltipShow","tooltipHide","brush"),N=0;t.clipEdge(!0),n.interactive(!1),r.orient("bottom").tickPadding(5),i.orient("left"),s.orient("bottom").tickPadding(5),o.orient("left");var C=function(n,s){var o=n.pos[0]+(s.offsetLeft||0),u=n.pos[1]+(s.offsetTop||0),a=r.tickFormat()(t.x()(n.point,n.pointIndex)),f=i.tickFormat()(t.y()(n.point,n.pointIndex)),l=S(n.series.key,a,f,n,k);e.tooltip.show([o,u],l,null,null,s)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+f.left,e.pos[1]+f.top],T.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){T.tooltipHide(e)}),T.on("tooltipHide",function(){E&&e.tooltip.cleanup()}),k.dispatch=T,k.legend=u,k.lines=t,k.lines2=n,k.xAxis=r,k.yAxis=i,k.x2Axis=s,k.y2Axis=o,d3.rebind(k,t,"defined","isArea","size","xDomain","yDomain","xRange","yRange","forceX","forceY","interactive","clipEdge","clipVoronoi","id"),k.options=e.utils.optionsFunc.bind(k),k.x=function(e){return arguments.length?(t.x(e),n.x(e),k):t.x},k.y=function(e){return arguments.length?(t.y(e),n.y(e),k):t.y},k.margin=function(e){return arguments.length?(f.top=typeof e.top!="undefined"?e.top:f.top,f.right=typeof e.right!="undefined"?e.right:f.right,f.bottom=typeof e.bottom!="undefined"?e.bottom:f.bottom,f.left=typeof e.left!="undefined"?e.left:f.left,k):f},k.margin2=function(e){return arguments.length?(l=e,k):l},k.width=function(e){return 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e.each(function(e){function tt(e){var t=+(e=="e"),n=t?1:-1,r=I/3;return"M"+.5*n+","+r+"A6,6 0 0 "+t+" "+6.5*n+","+(r+6)+"V"+(2*r-6)+"A6,6 0 0 "+t+" "+.5*n+","+2*r+"Z"+"M"+2.5*n+","+(r+8)+"V"+(2*r-8)+"M"+4.5*n+","+(r+8)+"V"+(2*r-8)}function nt(){h.empty()||h.extent(x),Y.data([h.empty()?k.domain():x]).each(function(e,t){var n=k(e[0])-k.range()[0],r=k.range()[1]-k(e[1]);d3.select(this).select(".left").attr("width",n<0?0:n),d3.select(this).select(".right").attr("x",k(e[1])).attr("width",r<0?0:r)})}function rt(){x=h.empty()?null:h.extent(),S=h.empty()?k.domain():h.extent(),D.brush({extent:S,brush:h}),nt(),r.width(j).height(F).color(e.map(function(e,t){return e.color||w(e,t)}).filter(function(t,n){return!e[n].disabled&&e[n].bar})),t.width(j).height(F).color(e.map(function(e,t){return e.color||w(e,t)}).filter(function(t,n){return!e[n].disabled&&!e[n].bar}));var n=$.select(".nv-focus .nv-barsWrap").datum(R.length?R.map(function(e,t){return{key:e.key,values:e.values.filter(function(e,t){return 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i=n.pos[0]+(r.offsetLeft||0),o=n.pos[1]+(r.offsetTop||0),f=s.tickFormat()(t.x()(n.point,n.pointIndex)),l=(n.series.bar?u:a).tickFormat()(t.y()(n.point,n.pointIndex)),c=N(n.series.key,f,l,n,B);e.tooltip.show([i,o],c,n.value<0?"n":"s",null,r)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+p.left,e.pos[1]+p.top],D.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){D.tooltipHide(e)}),r.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+p.left,e.pos[1]+p.top],D.tooltipShow(e)}),r.dispatch.on("elementMouseout.tooltip",function(e){D.tooltipHide(e)}),D.on("tooltipHide",function(){T&&e.tooltip.cleanup()}),B.dispatch=D,B.legend=c,B.lines=t,B.lines2=n,B.bars=r,B.bars2=i,B.xAxis=s,B.x2Axis=o,B.y1Axis=u,B.y2Axis=a,B.y3Axis=f,B.y4Axis=l,d3.rebind(B,t,"defined","size","clipVoronoi","interpolate"),B.options=e.utils.optionsFunc.bind(B),B.x=function(e){return arguments.length?(y=e,t.x(e),r.x(e),B):y},B.y=function(e){return 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j;L={};for(j in k)k[j]instanceof Array?L[j]=k[j].slice(0):L[j]=k[j]}if(!e||!e.length||!e.filter(function(e){return e.values.length}).length){var F=T.selectAll(".nv-noData").data([O]);return F.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),F.attr("x",a.left+C/2).attr("y",a.top+M/2).text(function(e){return e}),B}T.selectAll(".nv-noData").remove(),h=t.xScale(),p=t.yScale(),_=_||h,D=D||p;var I=T.selectAll("g.nv-wrap.nv-scatterChart").data([e]),q=I.enter().append("g").attr("class","nvd3 nv-wrap nv-scatterChart nv-chart-"+t.id()),R=q.append("g"),U=I.select("g");R.append("rect").attr("class","nvd3 nv-background").style("pointer-events","none"),R.append("g").attr("class","nv-x nv-axis"),R.append("g").attr("class","nv-y 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+define("mvc/ui/ui-modal",[],function(){var e=Backbone.View.extend({elMain:"body",optionsDefault:{title:"ui-modal",body:"",backdrop:!0,height:null,width:null,closing_events:!1,closing_callback:null,title_separator:!0},buttonList:{},initialize:function(e){e&&this._create(e)},show:function(e){this.initialize(e),this.options.height?(this.$body.css("height",this.options.height),this.$body.css("overflow","hidden")):this.$body.css("max-height",$(window).height()/2),this.options.width&&this.$dialog.css("width",this.options.width),this.visible?this.$el.show():this.$el.fadeIn("fast"),this.visible=!0},hide:function(){this.visible=!1,this.$el.fadeOut("fast"),this.options.closing_callback&&this.options.closing_callback()},enableButton:function(e){var t=this.buttonList[e];this.$buttons.find("#"+t).prop("disabled",!1)},disableButton:function(e){var t=this.buttonList[e];this.$buttons.find("#"+t).prop("disabled",!0)},showButton:function(e){var t=this.buttonList[e];this.$buttons.find("#"+t).show()},hideButton:function(e){var t=this.buttonList[e];this.$buttons.find("#"+t).hide()},getButton:function(e){var t=this.buttonList[e];return this.$buttons.find("#"+t)},scrollTop:function(){return this.$body.scrollTop()},_create:function(e){var t=this;if(this.options=_.defaults(e,this.optionsDefault),"progress"==this.options.body&&(this.options.body=$('<div class="progress progress-striped active"><div class="progress-bar progress-bar-info" style="width:100%"></div></div>')),this.$el&&(this.$el.remove(),$(document).off("keyup.ui-modal")),this.setElement(this._template(this.options.title)),this.$dialog=this.$el.find(".modal-dialog"),this.$body=this.$el.find(".modal-body"),this.$footer=this.$el.find(".modal-footer"),this.$buttons=this.$el.find(".buttons"),this.$backdrop=this.$el.find(".modal-backdrop"),this.$body.html(this.options.body),this.options.backdrop||this.$backdrop.removeClass("in"),this.options.buttons){this.buttonList={};var n=0;$.each(this.options.buttons,function(e,r){var i="button-"+n++;t.$buttons.append($('<button id="'+i+'"></button>').text(e).click(r)).append(" "),t.buttonList[e]=i})}else this.$footer.hide();$(this.elMain).append($(this.el)),this.options.closing_events&&($(document).on("keyup.ui-modal",function(e){27==e.keyCode&&t.hide()}),this.$el.find(".modal-backdrop").on("click",function(){t.hide()})),this.options.title_separator||this.$(".modal-header").css({border:"none","padding-bottom":"0px"})},_template:function(e){return'<div class="ui-modal modal"><div class="modal-backdrop fade in" style="z-index: -1;"></div><div class="modal-dialog"><div class="modal-content"><div class="modal-header"><button type="button" class="close" style="display: none;">&times;</button><h4 class="title">'+e+'</h4></div><div class="modal-body" style="position: static;"></div><div class="modal-footer"><div class="buttons" style="float: right;"></div></div></div</div></div>'}});return{View:e}}),define("utils/utils",[],function(){function e(t,n){for(var r in t){var i=t[r];i&&"object"==typeof i&&(n(i),e(i,n))}}function t(e){return/^[\],:{}\s]*$/.test(e.replace(/\\["\\\/bfnrtu]/g,"@").replace(/"[^"\\\n\r]*"|true|false|null|-?\d+(?:\.\d*)?(?:[eE][+\-]?\d+)?/g,"]").replace(/(?:^|:|,)(?:\s*\[)+/g,""))}function n(e){return $("<div/>").text(e).html()}function r(e){if(e instanceof Array||(e=[e]),0===e.length)return!1;for(var t in e)if(["__null__","__undefined__",null,void 0].indexOf(e[t])>-1)return!1;return!0}function i(e){var e=e.toString();if(e){e=e.replace(/,/g,", ");var t=e.lastIndexOf(", ");return-1!=t&&(e=e.substr(0,t)+" or "+e.substr(t+1)),e}return""}function s(e){top.__utils__get__=top.__utils__get__||{},e.cache&&top.__utils__get__[e.url]?(e.success&&e.success(top.__utils__get__[e.url]),console.debug("utils.js::get() - Fetching from cache ["+e.url+"].")):o({url:e.url,data:e.data,success:function(t){top.__utils__get__[e.url]=t,e.success&&e.success(t)},error:function(t){e.error&&e.error(t)}})}function o(e){var t={contentType:"application/json",type:e.type||"GET",data:e.data||{},url:e.url};"GET"==t.type||"DELETE"==t.type?(t.url+=-1==t.url.indexOf("?")?"?":"&",t.url=t.url+$.param(t.data,!0),t.data=null):(t.dataType="json",t.url=t.url,t.data=JSON.stringify(t.data)),$.ajax(t).done(function(t){if("string"==typeof t)try{t=t.replace("Infinity,",'"Infinity",'),t=jQuery.parseJSON(t)}catch(n){console.debug(n)}e.success&&e.success(t)}).fail(function(t){var n=null;try{n=jQuery.parseJSON(t.responseText)}catch(r){n=t.responseText}e.error&&e.error(n,t)})}function u(e,t){var n=$('<div class="'+e+'"></div>');n.appendTo(":eq(0)");var r=n.css(t);return n.remove(),r}function a(e){$('link[href^="'+e+'"]').length||$('<link href="'+galaxy_config.root+e+'" rel="stylesheet">').appendTo("head")}function f(e,t){return e?_.defaults(e,t):t}function l(e,t){for(var n=1,r=0;t>r;r++)n*=10;return Math.round(e*n)/n}function c(e,t,n){n=void 0!==n?n:1;var r="";if(e>=g)e/=g,r="TB";else if(e>=m)e/=m,r="GB";else if(e>=v)e/=v,r="MB";else if(e>=d)e/=d,r="KB";else{if(!(e>0))return t?"0 b":"<strong>-</strong>";r="b"}var i="b"==r?e:l(e,n);return t?i+" "+r:"<strong>"+i+"</strong> "+r}function h(){return top.__utils__uid__=top.__utils__uid__||0,"uid-"+top.__utils__uid__++}function p(){var e=new Date,t=(e.getHours()<10?"0":"")+e.getHours(),n=(e.getMinutes()<10?"0":"")+e.getMinutes();return datetime=e.getDate()+"/"+(e.getMonth()+1)+"/"+e.getFullYear()+", "+t+":"+n}var d=1024,v=d*d,m=v*d,g=m*d;return{cssLoadFile:a,cssGetAttribute:u,get:s,merge:f,bytesToString:c,uid:h,time:p,request:o,sanitize:n,textify:i,validate:r,deepeach:e,isJSON:t}}),define("mvc/ui/ui-portlet",["utils/utils"],function(e){var t=Backbone.View.extend({visible:!1,optionsDefault:{id:e.uid(),title:"",icon:"",buttons:null,body:null,scrollable:!0,nopadding:!1,operations:null,placement:"bottom",cls:"ui-portlet",operations_flt:"right"},$title:null,$content:null,$buttons:null,$operations:null,$header:null,initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.$content=this.$el.find(".content"),this.$title=this.$el.find(".portlet-title-text"),this.$header=this.$el.find(".portlet-header");var n=this.$el.find(".portlet-content");if(this.options.nopadding&&(n.css("padding","0px"),this.$content.css("padding","0px")),this.$buttons=$(this.el).find(".buttons"),this.options.buttons){var r=this;$.each(this.options.buttons,function(e,t){t.$el.prop("id",e),r.$buttons.append(t.$el)})}else this.$buttons.remove();if(this.$operations=$(this.el).find(".portlet-operations"),this.options.operations){var r=this;$.each(this.options.operations,function(e,t){t.$el.prop("id",e),r.$operations.append(t.$el)})}this.options.body&&this.append(this.options.body)},append:function(e){this.$content.append(e)},empty:function(){this.$content.empty()},content:function(){return this.$content},show:function(){this.$el.fadeIn("fast"),this.visible=!0},hide:function(){this.$el.fadeOut("fast"),this.visible=!1},enableButton:function(e){this.$buttons.find("#"+e).prop("disabled",!1)},disableButton:function(e){this.$buttons.find("#"+e).prop("disabled",!0)},hideOperation:function(e){this.$operations.find("#"+e).hide()},showOperation:function(e){this.$operations.find("#"+e).show()},setOperation:function(e,t){var n=this.$operations.find("#"+e);n.off("click"),n.on("click",t)},title:function(e){var t=this.$title;return e&&t.html(e),t.html()},disable:function(){this.$(".portlet-backdrop").show()},enable:function(){this.$(".portlet-backdrop").hide()},_template:function(e){var t='<div id="'+e.id+'" class="'+e.cls+'">';return e.title&&(t+='<div class="portlet-header"><div class="portlet-operations" style="float: '+e.operations_flt+';"></div><div class="portlet-title">',e.icon&&(t+='<i class="icon fa '+e.icon+'">&nbsp;</i>'),t+='<span class="portlet-title-text">'+e.title+"</span></div></div>"),t+='<div class="portlet-content">',"top"==e.placement&&(t+='<div class="buttons"></div>'),t+='<div class="content"></div>',"bottom"==e.placement&&(t+='<div class="buttons"></div>'),t+='</div><div class="portlet-backdrop"/></div>'}});return{View:t}}),define("mvc/ui/ui-buttons",["utils/utils"],function(e){var t=Backbone.View.extend({initialize:function(t){this.options=e.merge(t,{id:e.uid(),title:"",floating:"right",icon:"",cls:"ui-button btn btn-default",cls_wait:"btn btn-info"}),this.setElement(this._template(this.options));var n=this;$(this.el).on("click",function(){$(".tooltip").hide(),t.onclick&&!n.disabled&&t.onclick()}),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},disable:function(){this.$el.addClass("disabled"),this.disabled=!0},enable:function(){this.$el.removeClass("disabled"),this.disabled=!1},wait:function(){this.$el.removeClass(this.options.cls).addClass(this.options.cls_wait).prop("disabled",!0),this.$(".icon").removeClass(this.options.icon).addClass("fa-spinner fa-spin"),this.$(".title").html("Sending...")},unwait:function(){this.$el.removeClass(this.options.cls_wait).addClass(this.options.cls).prop("disabled",!1),this.$(".icon").removeClass("fa-spinner fa-spin").addClass(this.options.icon),this.$(".title").html(this.options.title)},_template:function(e){var t='<button id="'+e.id+'" type="submit" style="float: '+e.floating+';" type="button" class="'+e.cls+'">';return e.icon&&(t+='<i class="icon fa '+e.icon+'"/>&nbsp;'),t+='<span class="title">'+e.title+"</span></button>"}}),n=t.extend({initialize:function(e){t.prototype.initialize.call(this,e)},_template:function(e){return'<a id="'+e.id+'" class="'+e.cls+'" href="'+(e.href||"javascript:void(0)")+'" title="'+e.title+'" target="'+(e.target||"_top")+'"><span class="'+e.icon+'"/></a>'}}),r=Backbone.View.extend({initialize:function(t){this.options=e.merge(t,{title:"Select/Unselect all",icons:["fa fa-square-o","fa fa-minus-square-o","fa fa-check-square-o"],value:0}),this.setElement(this._template()),this.$title=this.$(".title"),this.$icon=this.$(".icon"),this.value(this.options.value),this.$title.html(this.options.title);var n=this;this.$el.on("click",function(){n.current=0===n.current&&2||0,n.value(n.current),n.options.onclick&&n.options.onclick()})},value:function(e,t){return void 0!==e&&(t&&0!==e&&(e=e!==t&&1||2),this.current=e,this.$icon.removeClass().addClass("icon").addClass(this.options.icons[e]),this.options.onchange&&this.options.onchange(e)),this.current},_template:function(){return'<div class="ui-button-check" ><span class="icon"/><span class="title"/></div>'}}),i=Backbone.View.extend({initialize:function(t){this.options=e.merge(t,{id:e.uid(),title:"",floating:"right",cls:"ui-button-icon",icon:"",tooltip:"",onclick:null}),this.setElement(this._template(this.options)),this.$button=this.$el.find(".button");var n=this;$(this.el).on("click",function(){$(".tooltip").hide(),t.onclick&&!n.disabled&&t.onclick()}),this.$button.tooltip({title:t.tooltip,placement:"bottom"})},disable:function(){this.$button.addClass("disabled"),this.disabled=!0},enable:function(){this.$button.removeClass("disabled"),this.disabled=!1},setIcon:function(e){this.$("i").removeClass(this.options.icon).addClass(e),this.options.icon=e},_template:function(e){var t="";e.title&&(t="width: auto;");var n='<div id="'+e.id+'" style="float: '+e.floating+"; "+t+'" class="'+e.cls+'"><div class="button">';return n+=e.title?'<i class="icon fa '+e.icon+'"/>&nbsp;<span class="title">'+e.title+"</span>":'<i class="icon fa '+e.icon+'"/>',n+="</div></div>"}}),s=Backbone.View.extend({$menu:null,initialize:function(t){this.options=e.merge(t,{id:"",title:"",floating:"right",pull:"right",icon:null,onclick:null,cls:"ui-button-icon ui-button-menu",tooltip:"",target:"",href:"",onunload:null,visible:!0,tag:""}),this.setElement($(this._template(this.options)));var n=$(this.el).find(".root"),r=this;n.on("click",function(e){$(".tooltip").hide(),e.preventDefault(),r.options.onclick&&r.options.onclick()}),this.options.visible||this.hide(),n.tooltip({title:t.tooltip,placement:"bottom"})},show:function(){$(this.el).show()},hide:function(){$(this.el).hide()},addMenu:function(t){var n={title:"",target:"",href:"",onclick:null,divider:!1,icon:null,cls:"button-menu btn-group"};n=e.merge(t,n),this.$menu||($(this.el).append(this._templateMenu()),this.$menu=$(this.el).find(".menu"));var r=$(this._templateMenuItem(n));r.on("click",function(e){e.preventDefault(),n.onclick&&n.onclick()}),this.$menu.append(r),n.divider&&this.$menu.append($(this._templateDivider()))},_templateMenuItem:function(e){var t='<li><a class="dropdown-item" href="'+e.href+'" target="'+e.target+'">';return e.icon&&(t+='<i class="fa '+e.icon+'"/>'),t+=" "+e.title+"</a></li>"},_templateMenu:function(){return'<ul class="menu dropdown-menu pull-'+this.options.pull+'" role="menu"/>'},_templateDivider:function(){return'<li class="divider"/>'},_template:function(e){var t="",n="";e.title?t="width: auto;":n="margin: 0px;";var r='<div id="'+e.id+'" style="float: '+e.floating+"; "+t+'" class="dropdown '+e.cls+'"><div class="root button dropdown-toggle" data-toggle="dropdown" style="'+n+'"><i class="icon fa '+e.icon+'"/>';return e.title&&(r+='&nbsp;<span class="title">'+e.title+"</span>"),r+="</div></div>"}});return{ButtonDefault:t,ButtonLink:n,ButtonIcon:i,ButtonCheck:r,ButtonMenu:s}}),define("mvc/ui/ui-select-default",["utils/utils","mvc/ui/ui-buttons"],function(e,t){var n=Backbone.View.extend({optionsDefault:{id:e.uid(),cls:"ui-select",error_text:"No options available",empty_text:"Nothing selected",visible:!0,wait:!1,multiple:!1,searchable:!0,optional:!1},initialize:function(n){var r=this;this.options=e.merge(n,this.optionsDefault),this.setElement(this._template(this.options)),this.$select=this.$el.find(".select"),this.$icon_dropdown=this.$el.find(".icon-dropdown");var i=null;this.$(".icon-resize").on("mousedown",function(e){var t=e.pageY,n=r.$select.height();i=i||n,$("#dd-helper").show().on("mousemove",function(e){r.$select.height(Math.max(n+(e.pageY-t),i))}).on("mouseup mouseleave",function(){$("#dd-helper").hide().off()})}),this.options.multiple&&(this.options.searchable?(this.all_button=new t.ButtonCheck({onclick:function(){var e=[];0!==r.all_button.value()&&(e=r._availableOptions()),r.value(e),r.trigger("change")}}),this.$el.prepend(this.all_button.$el)):this.$el.addClass("ui-select-multiple"),this.$select.prop("multiple",!0),this.$icon_dropdown.remove()),this.update(this.options.data),void 0!==this.options.value&&this.value(this.options.value),this.options.visible||this.hide(),this.options.wait?this.wait():this.show(),this.$select.on("change",function(){r.trigger("change")}),this.on("change",function(){r.options.onchange&&r.options.onchange(this.value())})},value:function(e){void 0!==e&&(null===e&&(e="__null__"),(this.exists(e)||this.options.multiple)&&(this.$select.val(e),this.$select.select2&&this.$select.select2("val",e)));var t=this._getValue();return this.all_button&&this.all_button.value($.isArray(t)&&t.length||0,this._size()),t},first:function(){var e=this.$select.find("option").first();return e.length>0?e.val():null},text:function(){return this.$select.find("option:selected").text()},show:function(){this.unwait(),this.$select.show(),this.$el.show()},hide:function(){this.$el.hide()},wait:function(){this.$icon_dropdown.removeClass(),this.$icon_dropdown.addClass("icon-dropdown fa fa-spinner fa-spin")},unwait:function(){this.$icon_dropdown.removeClass(),this.$icon_dropdown.addClass("icon-dropdown fa fa-caret-down")},disabled:function(){return this.$select.is(":disabled")},enable:function(){this.$select.prop("disabled",!1)},disable:function(){this.$select.prop("disabled",!0)},update:function(e){var t=this._getValue();this.$select.find("option").remove(),!this.options.multiple&&this.options.optional&&this.$select.append(this._templateOption({value:"__null__",label:this.options.empty_text}));for(var n in e)this.$select.append(this._templateOption(e[n]));0==this._size()?(this.disable(),this.$select.append(this._templateOption({value:"__null__",label:this.options.error_text}))):this.enable(),this.options.searchable&&(this.$select.select2("destroy"),this.$select.select2(),this.$(".select2-container .select2-search input").off("blur")),this.value(t),null!==this._getValue()||this.options.multiple&&this.options.optional||this.value(this.first())},setOnChange:function(e){this.options.onchange=e},exists:function(e){return this.$select.find('option[value="'+e+'"]').length>0},_getValue:function(){var t=this.$select.val();return e.validate(t)?t:null},_availableOptions:function(){var e=[];return this.$select.find("option").each(function(t,n){e.push($(n).attr("value"))}),e},_size:function(){return this.$select.find("option").length},_templateOption:function(e){return'<option value="'+e.value+'">'+e.label+"</option>"},_template:function(e){return'<div id="'+e.id+'" class="'+e.cls+'"><select id="'+e.id+'_select" class="select"/><div class="icon-dropdown"/><div class="icon-resize"><i class="fa fa-angle-double-right fa-rotate-45"/></div></div>'}});return{View:n}}),define("mvc/ui/ui-slider",["utils/utils"],function(e){var t=Backbone.View.extend({optionsDefault:{id:e.uid(),min:null,max:null,step:null,precise:!1,split:1e4},initialize:function(t){var n=this;this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.useslider=null!==this.options.max&&null!==this.options.min&&this.options.max>this.options.min,null===this.options.step&&(this.options.step=1,this.options.precise&&this.useslider&&(this.options.step=(this.options.max-this.options.min)/this.options.split)),this.useslider?(this.$slider=this.$el.find("#slider"),this.$slider.slider(this.options),this.$slider.on("slide",function(e,t){n.value(t.value)})):this.$el.find(".ui-form-slider-text").css("width","100%"),this.$text=this.$el.find("#text"),void 0!==this.options.value&&this.value(this.options.value),this.$text.on("change",function(){n.value($(this).val())});var r=[];this.$text.on("keyup",function(e){r[e.which]=!1,n.options.onchange&&n.options.onchange($(this).val())}),this.$text.on("keydown",function(e){var t=e.which;r[t]=!0,8==t||9==t||13==t||37==t||39==t||t>=48&&57>=t||t>=96&&105>=t||(190==t||110==t)&&-1==$(this).val().indexOf(".")&&n.options.precise||(189==t||109==t)&&-1==$(this).val().indexOf("-")||r[91]||r[17]||event.preventDefault()})},value:function(e){return void 0!==e&&(null!==e&&""!==e&&(isNaN(e)&&(e=0),null!==this.options.max&&(e=Math.min(e,this.options.max)),null!==this.options.min&&(e=Math.max(e,this.options.min))),this.$slider&&this.$slider.slider("value",e),this.$text.val(e),this.options.onchange&&this.options.onchange(e)),this.$text.val()},_template:function(e){return'<div id="'+e.id+'" class="ui-form-slider"><input id="text" type="text" class="ui-form-slider-text"/><div id="slider" class="ui-form-slider-element"/></div>'}});return{View:t}}),define("mvc/ui/ui-options",["utils/utils","mvc/ui/ui-buttons"],function(e,t){var n=Backbone.View.extend({initialize:function(n){var r=this;this.options=e.merge(n,{visible:!0,data:[],id:e.uid(),error_text:"No options available.",wait_text:"Please wait...",multiple:!1}),this.setElement('<div class="ui-options"/>'),this.$message=$("<div/>"),this.$options=$(this._template(n)),this.$menu=$('<div class="ui-options-menu"/>'),this.$el.append(this.$message),this.$el.append(this.$menu),this.$el.append(this.$options),this.options.multiple&&(this.all_button=new t.ButtonCheck({onclick:function(){r.$("input").prop("checked",0!==r.all_button.value()),r.trigger("change")}}),this.$menu.append(this.all_button.$el)),this.options.visible||this.$el.hide(),this.update(this.options.data),void 0!==this.options.value&&this.value(this.options.value),this.on("change",function(){this.options.onchange&&this.options.onchange(this.value())})},update:function(e){var t=this._getValue();if(this.$options.empty(),this._templateOptions)this.$options.append(this._templateOptions(e));else for(var n in e){var r=$(this._templateOption(e[n]));r.addClass("ui-option"),r.tooltip({title:e[n].tooltip,placement:"bottom"}),this.$options.append(r)}var i=this;this.$("input").on("change",function(){i.value(i._getValue()),i.trigger("change")}),this.value(t),this.unwait()},value:function(e){if(void 0!==e&&(this.$("input").prop("checked",!1),null!==e)){e instanceof Array||(e=[e]);for(var t in e)this.$('input[value="'+e[t]+'"]').first().prop("checked",!0)}var n=this._getValue();if(this.all_button){var r=n;r=r instanceof Array?r.length:0,this.all_button.value(r,this._size())}return n},exists:function(e){if(void 0!==e){e instanceof Array||(e=[e]);for(var t in e)if(this.$('input[value="'+e[t]+'"]').length>0)return!0}return!1},first:function(){var e=this.$("input").first();return e.length>0?e.val():null},wait:function(){0==this._size()&&(this._messageShow(this.options.wait_text,"info"),this.$options.hide(),this.$menu.hide())},unwait:function(){var e=this._size();0==e?(this._messageShow(this.options.error_text,"danger"),this.$options.hide(),this.$menu.hide()):(this._messageHide(),this.$options.css("display","inline-block"),this.$menu.show())},_getValue:function(){var t=[];return this.$(":checked").each(function(){t.push($(this).val())}),e.validate(t)?this.options.multiple?t:t[0]:null},_size:function(){return this.$(".ui-option").length},_messageShow:function(e,t){this.$message.show(),this.$message.removeClass(),this.$message.addClass("ui-message alert alert-"+t),this.$message.html(e)},_messageHide:function(){this.$message.hide()},_template:function(){return'<div class="ui-options-list"/>'}}),r=n.extend({_templateOption:function(t){var n=e.uid();return'<div class="ui-option"><input id="'+n+'" type="'+this.options.type+'" name="'+this.options.id+'" value="'+t.value+'"/><label class="ui-options-label" for="'+n+'">'+t.label+"</label></div>"}}),i={};i.View=r.extend({initialize:function(e){e.type="radio",r.prototype.initialize.call(this,e)}});var s={};s.View=r.extend({initialize:function(e){e.multiple=!0,e.type="checkbox",r.prototype.initialize.call(this,e)}});var o={};return o.View=n.extend({initialize:function(e){n.prototype.initialize.call(this,e)},value:function(e){return void 0!==e&&(this.$("input").prop("checked",!1),this.$("label").removeClass("active"),this.$('[value="'+e+'"]').prop("checked",!0).closest("label").addClass("active")),this._getValue()},_templateOption:function(e){var t="fa "+e.icon;e.label||(t+=" no-padding");var n='<label class="btn btn-default">';return e.icon&&(n+='<i class="'+t+'"/>'),n+='<input type="radio" name="'+this.options.id+'" value="'+e.value+'"/>',e.label&&(n+=e.label),n+="</label>"},_template:function(){return'<div class="btn-group ui-radiobutton" data-toggle="buttons"/>'}}),{Base:n,BaseIcons:r,Radio:i,RadioButton:o,Checkbox:s}}),define("mvc/ui/ui-drilldown",["utils/utils","mvc/ui/ui-options"],function(e,t){var n=t.BaseIcons.extend({initialize:function(e){e.type=e.display||"checkbox",e.multiple="checkbox"==e.display,t.BaseIcons.prototype.initialize.call(this,e),this.initial=!0},value:function(e){var n=t.BaseIcons.prototype.value.call(this,e);if(this.initial&&null!==n&&this.header_index){this.initial=!1;var r=n;$.isArray(r)||(r=[r]);for(var i in r){var s=this.header_index[r[i]];for(var o in s)this._setState(s[o],!0)}}return n},_setState:function(e,t){var n=this.$(".button-"+e),r=this.$(".subgroup-"+e);n.data("is_expanded",t),t?(r.fadeIn("fast"),n.removeClass("toggle-expand"),n.addClass("toggle")):(r.hide(),n.removeClass("toggle"),n.addClass("toggle-expand"))},_templateOptions:function(t){function n(e,t){var n=e.find(".button-"+t);n.on("click",function(){s._setState(t,!n.data("is_expanded"))})}function r(t,o,u){u=u||[];for(i in o){var f=o[i],l=f.options.length>0,h=u.slice(0);s.header_index[f.value]=h.slice(0);var p=$("<div/>");if(l){var v=e.uid(),m=$('<span class="button-'+v+' ui-drilldown-button form-toggle icon-button toggle-expand"/>'),g=$('<div class="subgroup-'+v+'" style="display: none; margin-left: 25px;"/>');h.push(v);var y=$("<div/>");y.append(m),y.append(s._templateOption({label:f.name,value:f.value})),p.append(y),r(g,f.options,h),p.append(g),n(p,v)}else p.append(s._templateOption({label:f.name,value:f.value}));t.append(p)}}var s=this;this.header_index={};var o=$("<div/>");return r(o,t),o},_template:function(e){return'<div class="ui-options-list drilldown-container" id="'+e.id+'"/>'}});return{View:n}}),define("mvc/ui/ui-misc",["utils/utils","mvc/ui/ui-select-default","mvc/ui/ui-slider","mvc/ui/ui-options","mvc/ui/ui-drilldown","mvc/ui/ui-buttons","mvc/ui/ui-modal"],function(e,t,n,r,i,s,o){var u=Backbone.View.extend({initialize:function(t){this.options=e.merge(t,{url:"",cls:""}),this.setElement(this._template(this.options))},_template:function(e){return'<img class="ui-image '+e.cls+'" src="'+e.url+'"/>'}}),a=Backbone.View.extend({initialize:function(t){this.options=e.merge(t,{title:"",cls:""}),this.setElement(this._template(this.options))},title:function(e){this.$el.html(e)},value:function(){return options.title},_template:function(e){return'<label class="ui-label '+e.cls+'">'+e.title+"</label>"}}),f=Backbone.View.extend({initialize:function(t){this.options=e.merge(t,{floating:"right",icon:"",tooltip:"",placement:"bottom",title:"",cls:""}),this.setElement(this._template(this.options)),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},_template:function(e){return'<div><span class="fa '+e.icon+'" class="ui-icon"/>&nbsp;'+e.title+"</div>"}}),l=Backbone.View.extend({initialize:function(t){this.options=e.merge(t,{title:"",cls:""}),this.setElement(this._template(this.options)),$(this.el).on("click",t.onclick)},_template:function(e){return'<div><a href="javascript:void(0)" class="ui-anchor '+e.cls+'">'+e.title+"</a></div>"}}),c=Backbone.View.extend({initialize:function(t){this.options=e.merge(t,{message:null,status:"info",cls:"",persistent:!1}),this.setElement('<div class="'+this.options.cls+'"/>'),this.options.message&&this.update(this.options)},update:function(t){if(this.options=e.merge(t,this.options),""!=t.message){if(this.$el.html(this._template(this.options)),this.$el.fadeIn(),this.timeout&&window.clearTimeout(this.timeout),!t.persistent){var n=this;this.timeout=window.setTimeout(function(){n.$el.is(":visible")?n.$el.fadeOut():n.$el.hide()},3e3)}}else this.$el.fadeOut()},_template:function(e){var t="ui-message alert alert-"+e.status;return e.large&&(t=("success"==e.status&&"done"||"danger"==e.status&&"error"||e.status)+"messagelarge"),'<div class="'+t+'" >'+e.message+"</div>"}}),h=Backbone.View.extend({initialize:function(t){this.options=e.merge(t,{onclick:null,searchword:""}),this.setElement(this._template(this.options));var n=this;this.options.onclick&&this.$el.on("submit",function(){var e=n.$el.find("#search");n.options.onclick(e.val())})},_template:function(e){return'<div class="ui-search"><form onsubmit="return false;"><input id="search" class="form-control input-sm" type="text" name="search" placeholder="Search..." value="'+e.searchword+'"><button type="submit" class="btn search-btn"><i class="fa fa-search"></i></button></form></div>'}}),p=Backbone.View.extend({initialize:function(t){this.options=e.merge(t,{type:"text",placeholder:"",disabled:!1,visible:!0,cls:"",area:!1}),this.setElement(this._template(this.options)),void 0!==this.options.value&&this.value(this.options.value),this.options.disabled&&this.$el.prop("disabled",!0),this.options.visible||this.$el.hide();var n=this;this.$el.on("input",function(){n.options.onchange&&n.options.onchange(n.$el.val())})},value:function(e){return void 0!==e&&this.$el.val(e),this.$el.val()},_template:function(e){return e.area?'<textarea id="'+e.id+'" class="ui-textarea '+e.cls+'"></textarea>':'<input id="'+e.id+'" type="'+e.type+'" value="'+e.value+'" placeholder="'+e.placeholder+'" class="ui-input '+e.cls+'">'}}),d=Backbone.View.extend({initialize:function(e){this.options=e,this.setElement(this._template(this.options)),void 0!==this.options.value&&this.value(this.options.value)},value:function(e){return void 0!==e&&this.$("hidden").val(e),this.$("hidden").val()},_template:function(e){var t='<div id="'+e.id+'" >';return e.info&&(t+="<div>"+e.info+"</div>"),t+='<hidden value="'+e.value+'"/></div>'}});return{Anchor:l,Button:s.ButtonDefault,ButtonIcon:s.ButtonIcon,ButtonCheck:s.ButtonCheck,ButtonMenu:s.ButtonMenu,ButtonLink:s.ButtonLink,Icon:f,Image:u,Input:p,Label:a,Message:c,Modal:o,RadioButton:r.RadioButton,Checkbox:r.Checkbox,Radio:r.Radio,Searchbox:h,Select:t,Hidden:d,Slider:n,Drilldown:i}}),define("plugin/library/jobs",["utils/utils"],function(e){return Backbone.Model.extend({initialize:function(t,n){this.app=t,this.options=e.merge(n,this.optionsDefault)},request:function(e,t,n,r,i){var s=this;e.state("wait","Requesting job results...");var o=e.get("dataset_id_job");o!=""?s._wait(e,r,i):s._submit(e,t,n,r,i)},cleanup:function(t){var n=this,r=t.get("dataset_id_job");r!=""&&(e.request({type:"PUT",url:config.root+"api/histories/none/contents/"+r,data:{deleted:!0},success:function(){n._refreshHdas()}}),t.set("dataset_id_job",""))},_submit:function(t,n,r,i,s){var o=this,u=t.id,a=t.get("type"),f=t.definition;data={tool_id:"charts",inputs:{input:{id:t.get("dataset_id"),src:"hda"},module:f.execute,columns:r,settings:n}},t.state("wait","Sending job request..."),e.request({type:"POST",url:config.root+"api/tools",data:data,success:function(e){if(!e.outputs||e.outputs.length==0)t.state("failed","Job submission failed. No response."),s&&s();else{o._refreshHdas();var n=e.outputs[0];t.state("wait","Your job has been queued. You may close the browser window. The job will run in the background."),t.set("dataset_id_job",n.id),o.app.storage.save(),o._wait(t,i,s)}},error:function(e){var n="";e&&e.message&&e.message.data&&e.message.data.input&&(n=e.message.data.input+"."),t.state("failed","This visualization requires the 'charts' tool. Please make sure it is installed. "+n),s&&s()}})},_wait:function(t,n,r){var i=this;e.request({type:"GET",url:config.root+"api/datasets/"+t.get("dataset_id_job"),data:{},success:function(e){var s=!1;switch(e.state){case"ok":t.state("wait","Job completed successfully..."),n&&n(e),s=!0;break;case"error":t.state("failed","Job has failed. Please check the history for details."),r&&r(e),s=!0;break;case"running":t.state("wait","Your job is running. You may close the browser window. The job will continue in the background.")}s||setTimeout(function(){i._wait(t,n,r)},i.app.config.get("query_timeout"))}})},_refreshHdas:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.refreshContents()}})}),define("plugin/library/datasets",["utils/utils"],function(e){return Backbone.Collection.extend({list:{},cache:{},initialize:function(t,n){this.app=t,this.options=e.merge(n,this.optionsDefault)},request:function(e){e.groups?this._get_blocks(e):this._get_dataset(e.id,e.success,e.error)},_get_blocks:function(e){function c(i){l._get(i,function(){var s=!1;for(var o in e.groups){destination_group=e.groups[o],source_group=i.groups[o],destination_group.values||(destination_group.values=[]),destination_group.values=destination_group.values.concat(source_group.values);if(source_group.values.length==0){s=!0;break}}if(++f<u&&!s){n&&n(parseInt(f/u*100));var l=i.start+r;i=$.extend(!0,a,{start:l}),c(i)}else t()})}var t=e.success,n=e.progress,r=this.app.config.get("query_limit"),i=e.start||0,s=i+e.query_limit||i+this.app.config.get("query_limit"),o=Math.abs(s-i);if(o<=0){console.debug("FAILED - Datasets::request() - Invalid query range.");return}var u=Math.ceil(o/r)||1,a=$.extend(!0,{},e),f=0,l=this,h=$.extend(!0,a,{start:i});this._get_dataset(e.id,function(){c(h)})},_get_dataset:function(t,n,r){var i=this.list[t];if(i){n(i);return}var s=this;e.request({type:"GET",url:config.root+"api/datasets/"+t,success:function(e){switch(e.state){case"error":r&&r(e);break;default:s.list[t]=e,n(e)}}})},_block_id:function(e,t){return e.id+"_"+e.start+"_"+e.start+this.app.config.get("query_limit")+"_"+t},_get:function(e,t){e.start=e.start||0;var n=[],r={},i=0;for(var s in e.groups){var o=e.groups[s];for(var u in o.columns){var a=o.columns[u].index,f=this._block_id(e,a);if(this.cache[f]||a==="auto"||a==="zero")continue;!r[a]&&a!==undefined&&(r[a]=i,n.push(a),i++)}}if(n.length==0){this._fill_from_cache(e),t(e);return}var l={dataset_id:e.id,start:e.start,columns:n},c=this;this._fetch(l,function(r){for(var i in r){var s=n[i],o=c._block_id(e,s);c.cache[o]=r[i]}c._fill_from_cache(e),t(e)})},_fill_from_cache:function(e){var t=e.start;console.debug("Datasets::_fill_from_cache() - Filling request from cache at "+t+".");var n=0;for(var r in e.groups){var i=e.groups[r];for(var s in i.columns){var o=i.columns[s],u=this._block_id(e,o.index),a=this.cache[u];a&&(n=Math.max(n,a.length))}}n==0&&console.debug("Datasets::_fill_from_cache() - Reached data range limit.");for(var r in e.groups){var i=e.groups[r];i.values=[];for(var f=0;f<n;f++)i.values[f]={x:parseInt(f)+t}}for(var r in e.groups){var i=e.groups[r];for(var s in i.columns){var o=i.columns[s];switch(o.index){case"auto":for(var f=0;f<n;f++){var l=i.values[f];l[s]=parseInt(f)+t}break;case"zero":for(var f=0;f<n;f++){var l=i.values[f];l[s]=0}break;default:var u=this._block_id(e,o.index),a=this.cache[u];for(var f=0;f<n;f++){var l=i.values[f],c=a[f];isNaN(c)&&!o.is_label&&!o.is_text&&(c=0),l[s]=c}}}}},_fetch:function(t,n){var r=t.start?t.start:0,i=this.app.config.get("query_limit"),s=0;t.columns&&(s=t.columns.length,console.debug("Datasets::_fetch() - Fetching "+s+" column(s) at "+r+".")),s==0&&console.debug("Datasets::_fetch() - No columns requested");var o="";for(var u in t.columns)o+=t.columns[u]+",";o=o.substring(0,o.length-1);var a=this;e.request({type:"GET",url:config.root+"api/datasets/"+t.dataset_id,data:{data_type:"raw_data",provider:"dataset-column",limit:i,offset:r,indeces:o},success:function(e){var t=new Array(s);for(var r=0;r<s;r++)t[r]=[];for(var r in e.data){var i=e.data[r];for(var o in i){var u=i[o];u!==undefined&&u!=2147483647&&t[o].push(u)}}console.debug("Datasets::_fetch() - Fetching complete."),n(t)}})}})}),define("plugin/models/group",[],function(){return Backbone.Model.extend({defaults:{key:"Data label",date:""},reset:function(){this.clear({silent:!0}).set(this.defaults),this.trigger("reset",this)}})}),define("plugin/models/groups",["plugin/models/group"],function(e){return Backbone.Collection.extend({model:e})}),define("plugin/models/chart",["plugin/models/groups"],function(e){return Backbone.Model.extend({defaults:{id:null,title:"",type:"",date:null,state:"",state_info:"",modified:!1,dataset_id:"",dataset_id_job:""},initialize:function(t){this.groups=new e,this.settings=new Backbone.Model},reset:function(){this.clear({silent:!0}).set(this.defaults),this.groups.reset(),this.settings.clear(),this.trigger("reset",this)},copy:function(e){var t=this;t.clear({silent:!0}).set(this.defaults),t.set(e.attributes),t.settings=e.settings.clone(),t.groups.reset(),e.groups.each(function(e){t.groups.add(e.clone())}),t.trigger("change",t)},state:function(e,t){this.set("state",e),this.set("state_info",t),this.trigger("set:state"),console.debug("Chart:state() - "+t+" ("+e+")")}})});var Visualization=Backbone.Model.extend({defaults:{config:{}},urlRoot:function(){var e="/api/visualizations";return window.galaxy_config&&galaxy_config.root?galaxy_config.root+e:e},initialize:function(e){_.isObject(e.config)&&_.isObject(this.defaults.config)&&_.defaults(e.config,this.defaults.config),this._setUpListeners()},_setUpListeners:function(){},set:function(e,t){if("config"===e){var n=this.get("config");_.isObject(n)&&(t=_.extend(_.clone(n),t))}return Backbone.Model.prototype.set.call(this,e,t),this},toString:function(){var e=this.get("id")||"";return this.get("title")&&(e+=":"+this.get("title")),"Visualization("+e+")"}}),VisualizationCollection=Backbone.Collection.extend({model:Visualization,url:function(){return galaxy_config.root+"api/visualizations"},initialize:function(e,t){t=t||{}},set:function(e,t){var n=this;e=_.map(e,function(e){var t=n.get(e.id);if(!t)return e;var r=t.toJSON();return _.extend(r,e),r}),Backbone.Collection.prototype.set.call(this,e,t)},toString:function(){return["VisualizationCollection(",[this.historyId,this.length].join(),")"].join("")}});define("mvc/visualization/visualization-model",function(){}),define("plugin/library/storage",["utils/utils","plugin/models/chart","plugin/models/group","mvc/visualization/visualization-model"],function(e,t,n){return Backbone.Model.extend({vis:null,initialize:function(e){this.app=e,this.chart=this.app.chart,this.options=this.app.options,this.id=this.options.id,this.vis=new Visualization({type:"charts",config:{dataset_id:this.options.config.dataset_id,chart_dict:{}}}),this.id&&(this.vis.id=this.id);var t=this.options.config.chart_dict;t&&(this.vis.get("config").chart_dict=t)},save:function(){var e=this.app.chart;this.vis.get("config").chart_dict={};var t=e.get("title");t!=""&&this.vis.set("title",t);var n={attributes:e.attributes,settings:e.settings.attributes,groups:[]};e.groups.each(function(e){n.groups.push(e.attributes)}),this.vis.get("config").chart_dict=n;var r=this;this.vis.save().fail(function(e,t,n){console.error(e,t,n)}).then(function(e){e&&e.id&&(r.id=e.id)})},load:function(){var e=this.vis.get("config").chart_dict;if(!e.attributes)return!1;var t=e.attributes.type;if(!t)return console.debug("Storage::load() - Chart type not provided. Invalid format."),!1;var r=this.app.types.get(t);if(!r)return console.debug("Storage::load() - Chart type not supported. Please re-configure the chart. Resetting chart."),!1;console.debug("Storage::load() - Loading chart type "+t+"."),this.chart.definition=r,this.chart.set(e.attributes),this.chart.state("ok","Loading saved visualization..."),this.chart.settings.set(e.settings);for(var i in e.groups)this.chart.groups.add(new n(e.groups[i]));return this.chart.set("modified",!1),!0}})}),define("utils/deferred",["utils/utils"],function(e){return Backbone.Model.extend({initialize:function(){this.active={},this.last=null},execute:function(t){var n=this,r=e.uid(),i=t.length>0;this.active[r]=!0;var s=$.Deferred();s.promise().always(function(){delete n.active[r],i&&console.debug("Deferred::execute() - "+this.state()+" "+r)}),$.when(this.last).always(function(){n.active[r]?(i&&console.debug("Deferred::execute() - running "+r),t(s),!i&&s.resolve()):s.reject()}),this.last=s.promise()},reset:function(){console.debug("Deferred::execute() - reset");for(var e in this.active)this.active[e]=!1},ready:function(){return $.isEmptyObject(this.active)}})}),define("plugin/views/viewport",["mvc/ui/ui-portlet","mvc/ui/ui-misc","utils/utils"],function(e,t,n){return Backbone.View.extend({container_list:[],canvas_list:[],initialize:function(e,t){this.app=e,this.chart=this.app.chart,this.options=n.merge(t,this.optionsDefault),this.setElement($(this._template())),this._fullscreen(this.$el,50);var r=$("body").css("overflow");this.$el.on("mouseover",function(){$("body").css("overflow","hidden")}).on("mouseout",function(){$("body").css("overflow",r)}),this._createContainer("div");var i=this;this.chart.on("redraw",function(){i.app.deferred.execute(function(e){i._draw(e,i.chart)})}),this.chart.on("set:state",function(){var e=i.$el.find("#info"),t=i.$el.find(".charts-viewport-container"),n=e.find("#icon");n.removeClass(),e.show(),e.find("#text").html(i.chart.get("state_info"));var r=i.chart.get("state");switch(r){case"ok":e.hide(),t.show();break;case"failed":n.addClass("icon fa fa-warning"),t.hide();break;default:n.addClass("icon fa fa-spinner fa-spin"),t.show()}})},show:function(){this.$el.show()},hide:function(){this.$el.hide()},_fullscreen:function(e,t){e.css("height",$(window).height()-t),$(window).resize(function(){e.css("height",$(window).height()-t)})},_createContainer:function(e,t){t=t||1;for(var n in this.container_list)this.container_list[n].remove();this.container_list=[],this.canvas_list=[];for(var n=0;n<t;n++){var r=$(this._templateContainer(e,parseInt(100/t)));this.$el.append(r),this.container_list[n]=r,this.canvas_list[n]=r.find(".charts-viewport-canvas").attr("id")}},_draw:function(e,t){var n=this,r=t.get("type");this.chart_definition=t.definition;var i=1;t.settings.get("use_panels")==="true"&&(i=t.groups.length),this._createContainer(this.chart_definition.tag,i),t.state("wait","Please wait...");if(!this.chart_definition.execute||this.chart_definition.execute&&t.get("modified"))this.app.jobs.cleanup(t),t.set("modified",!1);var 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t=e.models.line(),n=e.models.line(),r=e.models.axis(),i=e.models.axis(),s=e.models.axis(),o=e.models.axis(),u=e.models.legend(),a=d3.svg.brush(),f={top:30,right:30,bottom:30,left:60},l={top:0,right:30,bottom:20,left:60},c=e.utils.defaultColor(),h=null,p=null,d=100,v,m,g,y,b=!0,w=null,E=!0,S=function(e,t,n,r,i){return"<h3>"+e+"</h3>"+"<p>"+n+" at "+t+"</p>"},x="No Data Available.",T=d3.dispatch("tooltipShow","tooltipHide","brush"),N=0;t.clipEdge(!0),n.interactive(!1),r.orient("bottom").tickPadding(5),i.orient("left"),s.orient("bottom").tickPadding(5),o.orient("left");var C=function(n,s){var o=n.pos[0]+(s.offsetLeft||0),u=n.pos[1]+(s.offsetTop||0),a=r.tickFormat()(t.x()(n.point,n.pointIndex)),f=i.tickFormat()(t.y()(n.point,n.pointIndex)),l=S(n.series.key,a,f,n,k);e.tooltip.show([o,u],l,null,null,s)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+f.left,e.pos[1]+f.top],T.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){T.tooltipHide(e)}),T.on("tooltipHide",function(){E&&e.tooltip.cleanup()}),k.dispatch=T,k.legend=u,k.lines=t,k.lines2=n,k.xAxis=r,k.yAxis=i,k.x2Axis=s,k.y2Axis=o,d3.rebind(k,t,"defined","isArea","size","xDomain","yDomain","xRange","yRange","forceX","forceY","interactive","clipEdge","clipVoronoi","id"),k.options=e.utils.optionsFunc.bind(k),k.x=function(e){return arguments.length?(t.x(e),n.x(e),k):t.x},k.y=function(e){return arguments.length?(t.y(e),n.y(e),k):t.y},k.margin=function(e){return arguments.length?(f.top=typeof e.top!="undefined"?e.top:f.top,f.right=typeof e.right!="undefined"?e.right:f.right,f.bottom=typeof e.bottom!="undefined"?e.bottom:f.bottom,f.left=typeof e.left!="undefined"?e.left:f.left,k):f},k.margin2=function(e){return arguments.length?(l=e,k):l},k.width=function(e){return 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e.each(function(e){function tt(e){var t=+(e=="e"),n=t?1:-1,r=I/3;return"M"+.5*n+","+r+"A6,6 0 0 "+t+" "+6.5*n+","+(r+6)+"V"+(2*r-6)+"A6,6 0 0 "+t+" "+.5*n+","+2*r+"Z"+"M"+2.5*n+","+(r+8)+"V"+(2*r-8)+"M"+4.5*n+","+(r+8)+"V"+(2*r-8)}function nt(){h.empty()||h.extent(x),Y.data([h.empty()?k.domain():x]).each(function(e,t){var n=k(e[0])-k.range()[0],r=k.range()[1]-k(e[1]);d3.select(this).select(".left").attr("width",n<0?0:n),d3.select(this).select(".right").attr("x",k(e[1])).attr("width",r<0?0:r)})}function rt(){x=h.empty()?null:h.extent(),S=h.empty()?k.domain():h.extent(),D.brush({extent:S,brush:h}),nt(),r.width(j).height(F).color(e.map(function(e,t){return e.color||w(e,t)}).filter(function(t,n){return!e[n].disabled&&e[n].bar})),t.width(j).height(F).color(e.map(function(e,t){return e.color||w(e,t)}).filter(function(t,n){return!e[n].disabled&&!e[n].bar}));var n=$.select(".nv-focus .nv-barsWrap").datum(R.length?R.map(function(e,t){return{key:e.key,values:e.values.filter(function(e,t){return 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i=n.pos[0]+(r.offsetLeft||0),o=n.pos[1]+(r.offsetTop||0),f=s.tickFormat()(t.x()(n.point,n.pointIndex)),l=(n.series.bar?u:a).tickFormat()(t.y()(n.point,n.pointIndex)),c=N(n.series.key,f,l,n,B);e.tooltip.show([i,o],c,n.value<0?"n":"s",null,r)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+p.left,e.pos[1]+p.top],D.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){D.tooltipHide(e)}),r.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+p.left,e.pos[1]+p.top],D.tooltipShow(e)}),r.dispatch.on("elementMouseout.tooltip",function(e){D.tooltipHide(e)}),D.on("tooltipHide",function(){T&&e.tooltip.cleanup()}),B.dispatch=D,B.legend=c,B.lines=t,B.lines2=n,B.bars=r,B.bars2=i,B.xAxis=s,B.x2Axis=o,B.y1Axis=u,B.y2Axis=a,B.y3Axis=f,B.y4Axis=l,d3.rebind(B,t,"defined","size","clipVoronoi","interpolate"),B.options=e.utils.optionsFunc.bind(B),B.x=function(e){return arguments.length?(y=e,t.x(e),r.x(e),B):y},B.y=function(e){return 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j;L={};for(j in k)k[j]instanceof Array?L[j]=k[j].slice(0):L[j]=k[j]}if(!e||!e.length||!e.filter(function(e){return e.values.length}).length){var F=T.selectAll(".nv-noData").data([O]);return F.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),F.attr("x",a.left+C/2).attr("y",a.top+M/2).text(function(e){return e}),B}T.selectAll(".nv-noData").remove(),h=t.xScale(),p=t.yScale(),_=_||h,D=D||p;var I=T.selectAll("g.nv-wrap.nv-scatterChart").data([e]),q=I.enter().append("g").attr("class","nvd3 nv-wrap nv-scatterChart nv-chart-"+t.id()),R=q.append("g"),U=I.select("g");R.append("rect").attr("class","nvd3 nv-background").style("pointer-events","none"),R.append("g").attr("class","nv-x nv-axis"),R.append("g").attr("class","nv-y 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$.extend(!0,{},e,{title:"Stream",category:"Area charts",zoomable:!0,keywords:"default small",showmaxmin:!0,columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/histogram/config",["plugin/charts/forms/default"],function(e){return $.extend(!0,{},e,{library:"NVD3",tag:"svg",title:"Histogram",category:"Data processing (requires 'charts' tool from Toolshed)",execute:"histogram",keywords:"small medium large",columns:{y:{title:"Observations",is_numeric:!0}},settings:{x_axis_label:{init:"Values"},y_axis_label:{init:"Density"},y_axis_type:{init:"f"},y_axis_precision:{init:".2"}}})}),define("plugin/charts/nvd3/line/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Line chart",category:"Others",zoomable:!0,columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for 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\ No newline at end of file
diff --git a/lib/galaxy/dependencies/__init__.py b/lib/galaxy/dependencies/__init__.py
index d9b5cbd1385..d2079f15905 100644
--- a/lib/galaxy/dependencies/__init__.py
+++ b/lib/galaxy/dependencies/__init__.py
@@ -3,6 +3,7 @@ Determine what optional dependencies are needed.
 """
 import pkg_resources
 
+from sys import version_info
 from os.path import dirname, join
 from xml.etree import ElementTree
 
@@ -25,8 +26,9 @@ class ConditionalDependencies( object ):
             "job_config_file",
             join( dirname( self.config_file ), 'job_conf.xml' ) )
         try:
-            for plugin in ElementTree.parse( job_conf_xml ).findall( './plugins/plugin[@load]' ):
-                self.job_runners.append( plugin.attrib['load'] )
+            for plugin in ElementTree.parse( job_conf_xml ).find( 'plugins' ).findall( 'plugin' ):
+                if 'load' in plugin.attrib:
+                    self.job_runners.append( plugin.attrib['load'] )
         except (OSError, IOError):
             pass
 
@@ -68,6 +70,16 @@ class ConditionalDependencies( object ):
         return ( asbool( self.config["debug"] ) and
                  asbool( self.config["use_interactive"] ) )
 
+    def check_pygments( self ):
+        # pygments is a dependency of weberror and only weberror
+        return self.check_weberror()
+
+    def check_importlib( self ):
+        return version_info < (2, 7)
+
+    def check_ordereddict( self ):
+        return version_info < (2, 7)
+
 
 def optional( config_file ):
     rval = []
diff --git a/lib/galaxy/dependencies/conditional-requirements.txt b/lib/galaxy/dependencies/conditional-requirements.txt
index e72f8a4a3f9..5302ad69528 100644
--- a/lib/galaxy/dependencies/conditional-requirements.txt
+++ b/lib/galaxy/dependencies/conditional-requirements.txt
@@ -1,6 +1,9 @@
 # These dependencies are only required when certain config options are set
 psycopg2==2.6.1
-WebError==0.11
+WebError==0.10.3
+Pygments==2.0.2
+importlib==1.0.3
+ordereddict==1.1
 python-openid
 MySQL-python
 fluent-logger
diff --git a/lib/galaxy/dependencies/requirements.txt b/lib/galaxy/dependencies/requirements.txt
index 677ae2d4980..bb8754c8212 100644
--- a/lib/galaxy/dependencies/requirements.txt
+++ b/lib/galaxy/dependencies/requirements.txt
@@ -1,5 +1,4 @@
 # packages with C extensions
-Cheetah==2.4.4
 bx-python==0.7.3
 MarkupSafe==0.23
 PyYAML==3.11
@@ -26,14 +25,15 @@ pytz==2015.4
 Babel==2.0
 Beaker==1.7.0
 
+# Cheetah and dependencies
+Cheetah==2.4.4
+Markdown==2.6.3
+
 # BioBlend and dependencies
 bioblend==0.6.1
 boto==2.38.0
 requests==2.8.1
-
-# WebError and dependences
-WebError==0.11
-Pygments==2.0.2
+requests-toolbelt==0.4.0
 
 # kombu and dependencies
 kombu==3.0.26
diff --git a/lib/galaxy/jobs/__init__.py b/lib/galaxy/jobs/__init__.py
index 259277d9fae..efd7850c7e0 100644
--- a/lib/galaxy/jobs/__init__.py
+++ b/lib/galaxy/jobs/__init__.py
@@ -37,9 +37,6 @@ from .datasets import DatasetPath
 
 log = logging.getLogger( __name__ )
 
-DATABASE_MAX_STRING_SIZE = util.DATABASE_MAX_STRING_SIZE
-DATABASE_MAX_STRING_SIZE_PRETTY = util.DATABASE_MAX_STRING_SIZE_PRETTY
-
 # This file, if created in the job's working directory, will be used for
 # setting advanced metadata properties on the job and its associated outputs.
 # This interface is currently experimental, is only used by the upload tool,
@@ -869,7 +866,7 @@ class JobWrapper( object ):
         self.dependency_shell_commands = self.tool.build_dependency_shell_commands()
         # We need command_line persisted to the db in order for Galaxy to re-queue the job
         # if the server was stopped and restarted before the job finished
-        job.command_line = self.command_line
+        job.command_line = unicodify(self.command_line)
         self.sa_session.add( job )
         self.sa_session.flush()
         # Return list of all extra files
@@ -990,18 +987,11 @@ class JobWrapper( object ):
                 self.sa_session.add( dataset )
                 self.sa_session.flush()
             job.set_final_state( job.states.ERROR )
-            job.command_line = self.command_line
+            job.command_line = unicodify(self.command_line)
             job.info = message
             # TODO: Put setting the stdout, stderr, and exit code in one place
             # (not duplicated with the finish method).
-            if ( len( stdout ) > DATABASE_MAX_STRING_SIZE ):
-                stdout = util.shrink_string_by_size( stdout, DATABASE_MAX_STRING_SIZE, join_by="\n..\n", left_larger=True, beginning_on_size_error=True )
-                log.info( "stdout for job %d is greater than %s, only a portion will be logged to database" % ( job.id, DATABASE_MAX_STRING_SIZE_PRETTY ) )
-            job.stdout = stdout
-            if ( len( stderr ) > DATABASE_MAX_STRING_SIZE ):
-                stderr = util.shrink_string_by_size( stderr, DATABASE_MAX_STRING_SIZE, join_by="\n..\n", left_larger=True, beginning_on_size_error=True )
-                log.info( "stderr for job %d is greater than %s, only a portion will be logged to database" % ( job.id, DATABASE_MAX_STRING_SIZE_PRETTY ) )
-            job.stderr = stderr
+            job.set_streams( stdout, stderr )
             # Let the exit code be Null if one is not provided:
             if ( exit_code is not None ):
                 job.exit_code = exit_code
@@ -1093,8 +1083,6 @@ class JobWrapper( object ):
         the contents of the output files.
         """
         finish_timer = util.ExecutionTimer()
-        stdout = unicodify( stdout )
-        stderr = unicodify( stderr )
 
         # default post job setup
         self.sa_session.expunge_all()
@@ -1272,13 +1260,10 @@ class JobWrapper( object ):
         # Flush all the dataset and job changes above.  Dataset state changes
         # will now be seen by the user.
         self.sa_session.flush()
-        # Save stdout and stderr
-        if len( job.stdout ) > DATABASE_MAX_STRING_SIZE:
-            log.info( "stdout for job %d is greater than %s, only a portion will be logged to database" % ( job.id, DATABASE_MAX_STRING_SIZE_PRETTY ) )
-        job.stdout = util.shrink_string_by_size( job.stdout, DATABASE_MAX_STRING_SIZE, join_by="\n..\n", left_larger=True, beginning_on_size_error=True )
-        if len( job.stderr ) > DATABASE_MAX_STRING_SIZE:
-            log.info( "stderr for job %d is greater than %s, only a portion will be logged to database" % ( job.id, DATABASE_MAX_STRING_SIZE_PRETTY ) )
-        job.stderr = util.shrink_string_by_size( job.stderr, DATABASE_MAX_STRING_SIZE, join_by="\n..\n", left_larger=True, beginning_on_size_error=True )
+
+        # Shrink streams and ensure unicode.
+        job.set_streams( job.stdout, job.stderr )
+
         # The exit code will be null if there is no exit code to be set.
         # This is so that we don't assign an exit code, such as 0, that
         # is either incorrect or has the wrong semantics.
@@ -1324,7 +1309,7 @@ class JobWrapper( object ):
         self.tool.call_hook( 'exec_after_process', self.queue.app, inp_data=inp_data,
                              out_data=out_data, param_dict=param_dict,
                              tool=self.tool, stdout=job.stdout, stderr=job.stderr )
-        job.command_line = self.command_line
+        job.command_line = unicodify(self.command_line)
 
         collected_bytes = 0
         # Once datasets are collected, set the total dataset size (includes extra files)
@@ -1810,8 +1795,6 @@ class TaskWrapper(JobWrapper):
         the output datasets based on stderr and stdout from the command, and
         the contents of the output files.
         """
-        stdout = unicodify( stdout )
-        stderr = unicodify( stderr )
 
         # This may have ended too soon
         log.debug( 'task %s for job %d ended; exit code: %d'
@@ -1839,13 +1822,8 @@ class TaskWrapper(JobWrapper):
             task.state = task.states.ERROR
 
         # Save stdout and stderr
-        if len( stdout ) > DATABASE_MAX_STRING_SIZE:
-            log.error( "stdout for task %d is greater than %s, only a portion will be logged to database" % ( task.id, DATABASE_MAX_STRING_SIZE_PRETTY ) )
-        task.stdout = util.shrink_string_by_size( stdout, DATABASE_MAX_STRING_SIZE, join_by="\n..\n", left_larger=True, beginning_on_size_error=True )
-        if len( stderr ) > DATABASE_MAX_STRING_SIZE:
-            log.error( "stderr for task %d is greater than %s, only a portion will be logged to database" % ( task.id, DATABASE_MAX_STRING_SIZE_PRETTY ) )
+        task.set_streams( stdout, stderr )
         self._collect_metrics( task )
-        task.stderr = util.shrink_string_by_size( stderr, DATABASE_MAX_STRING_SIZE, join_by="\n..\n", left_larger=True, beginning_on_size_error=True )
         task.exit_code = tool_exit_code
         task.command_line = self.command_line
         self.sa_session.flush()
diff --git a/lib/galaxy/jobs/command_factory.py b/lib/galaxy/jobs/command_factory.py
index 593dacbc5bf..a879eebdf2c 100644
--- a/lib/galaxy/jobs/command_factory.py
+++ b/lib/galaxy/jobs/command_factory.py
@@ -3,6 +3,8 @@ from os import chmod
 from os.path import join
 from os.path import abspath
 
+from galaxy import util
+
 from logging import getLogger
 log = getLogger( __name__ )
 
@@ -158,7 +160,8 @@ class CommandsBuilder(object):
     def __init__(self, initial_command):
         # Remove trailing semi-colon so we can start hacking up this command.
         # TODO: Refactor to compose a list and join with ';', would be more clean.
-        commands = initial_command.rstrip("; ")
+        initial_command = util.unicodify(initial_command)
+        commands = initial_command.rstrip(u"; ")
         self.commands = commands
 
         # Coping work dir outputs or setting metadata will mask return code of
@@ -167,17 +170,19 @@ class CommandsBuilder(object):
         self.return_code_captured = False
 
     def prepend_command(self, command):
-        self.commands = "%s; %s" % (command, self.commands)
+        self.commands = u"%s; %s" % (command,
+                                     self.commands)
         return self
 
     def prepend_commands(self, commands):
-        return self.prepend_command("; ".join(commands))
+        return self.prepend_command(u"; ".join(commands))
 
     def append_command(self, command):
-        self.commands = "%s; %s" % (self.commands, command)
+        self.commands = u"%s; %s" % (self.commands,
+                                     command)
 
     def append_commands(self, commands):
-        self.append_command("; ".join(commands))
+        self.append_command(u"; ".join(commands))
 
     def capture_return_code(self):
         if not self.return_code_captured:
diff --git a/lib/galaxy/jobs/output_checker.py b/lib/galaxy/jobs/output_checker.py
index 768a8a31362..2b8b53b685e 100644
--- a/lib/galaxy/jobs/output_checker.py
+++ b/lib/galaxy/jobs/output_checker.py
@@ -133,9 +133,8 @@ def check_output( tool, stdout, stderr, tool_exit_code, job ):
         success = True
 
     # Store the modified stdout and stderr in the job:
-    if None is not job:
-        job.stdout = stdout
-        job.stderr = stderr
+    if job is not None:
+        job.set_streams( stdout, stderr )
 
     return success
 
diff --git a/lib/galaxy/jobs/runners/__init__.py b/lib/galaxy/jobs/runners/__init__.py
index 42e7bedccf4..ef1858a9aa4 100644
--- a/lib/galaxy/jobs/runners/__init__.py
+++ b/lib/galaxy/jobs/runners/__init__.py
@@ -305,6 +305,8 @@ class BaseJobRunner( object ):
 
     def write_executable_script( self, path, contents, mode=0o755 ):
         with open( path, 'w' ) as f:
+            if isinstance(contents, unicode):
+                contents = contents.encode("UTF-8")
             f.write( contents )
         os.chmod( path, mode )
         self._handle_script_integrity( path )
diff --git a/lib/galaxy/jobs/runners/util/job_script/__init__.py b/lib/galaxy/jobs/runners/util/job_script/__init__.py
index 8170443c279..6556290a6ef 100644
--- a/lib/galaxy/jobs/runners/util/job_script/__init__.py
+++ b/lib/galaxy/jobs/runners/util/job_script/__init__.py
@@ -1,5 +1,6 @@
 from string import Template
 from pkg_resources import resource_string
+from galaxy.util import unicodify
 
 DEFAULT_JOB_FILE_TEMPLATE = Template(
     resource_string(__name__, 'DEFAULT_JOB_FILE_TEMPLATE.sh').decode('UTF-8')
@@ -61,6 +62,8 @@ def job_script(template=DEFAULT_JOB_FILE_TEMPLATE, **kwds):
     template_params.update(**kwds)
     env_setup_commands_str = "\n".join(template_params["env_setup_commands"])
     template_params["env_setup_commands"] = env_setup_commands_str
+    for key, value in template_params.items():
+        template_params[key] = unicodify(value)
     if not isinstance(template, Template):
         template = Template(template)
     return template.safe_substitute(template_params)
diff --git a/lib/galaxy/managers/users.py b/lib/galaxy/managers/users.py
index 39d96e3d445..4a130b23fa2 100644
--- a/lib/galaxy/managers/users.py
+++ b/lib/galaxy/managers/users.py
@@ -64,6 +64,11 @@ class UserManager( base.ModelManager, deletable.PurgableManagerMixin ):
             self.app.security_agent.user_set_default_permissions( user, default_access_private=permissions )
         return user
 
+    def delete(self, user):
+        user.deleted = True
+        self.session().add(user)
+        self.session().flush()
+
     def _error_on_duplicate_email( self, email ):
         """
         Check for a duplicate email and raise if found.
@@ -249,13 +254,12 @@ class UserSerializer( base.ModelSerializer, deletable.PurgableSerializerMixin ):
         self.add_view( 'detailed', [
             # 'update_time',
             # 'create_time',
-
+            'is_admin',
             'total_disk_usage',
             'nice_total_disk_usage',
             'quota_percent',
-
-            # 'deleted',
-            # 'purged',
+            'deleted',
+            'purged',
             # 'active',
 
             # 'preferences',
diff --git a/lib/galaxy/model/__init__.py b/lib/galaxy/model/__init__.py
index f18661364a8..26788404629 100644
--- a/lib/galaxy/model/__init__.py
+++ b/lib/galaxy/model/__init__.py
@@ -99,7 +99,7 @@ class HasName:
         return name
 
 
-class HasJobMetrics:
+class JobLike:
 
     def _init_metrics( self ):
         self.text_metrics = []
@@ -130,6 +130,18 @@ class HasJobMetrics:
         # TODO: Make iterable, concatenate with chain
         return self.text_metrics + self.numeric_metrics
 
+    def set_streams( self, stdout, stderr ):
+        stdout = galaxy.util.unicodify( stdout )
+        stderr = galaxy.util.unicodify( stderr )
+        if ( len( stdout ) > galaxy.util.DATABASE_MAX_STRING_SIZE ):
+            stdout = galaxy.util.shrink_string_by_size( stdout, galaxy.util.DATABASE_MAX_STRING_SIZE, join_by="\n..\n", left_larger=True, beginning_on_size_error=True )
+            log.info( "stdout for %s %d is greater than %s, only a portion will be logged to database", type(self), self.id, galaxy.util.DATABASE_MAX_STRING_SIZE_PRETTY )
+        self.stdout = stdout
+        if ( len( stderr ) > galaxy.util.DATABASE_MAX_STRING_SIZE ):
+            stderr = galaxy.util.shrink_string_by_size( stderr, galaxy.util.DATABASE_MAX_STRING_SIZE, join_by="\n..\n", left_larger=True, beginning_on_size_error=True )
+            log.info( "stderr for %s %d is greater than %s, only a portion will be logged to database", type(self), self.id, galaxy.util.DATABASE_MAX_STRING_SIZE_PRETTY )
+        self.stderr = stderr
+
 
 class User( object, Dictifiable ):
     use_pbkdf2 = True
@@ -307,7 +319,7 @@ class TaskMetricNumeric( BaseJobMetric ):
     pass
 
 
-class Job( object, HasJobMetrics, Dictifiable ):
+class Job( object, JobLike, Dictifiable ):
     dict_collection_visible_keys = [ 'id', 'state', 'exit_code', 'update_time', 'create_time' ]
     dict_element_visible_keys = [ 'id', 'state', 'exit_code', 'update_time', 'create_time'  ]
 
@@ -356,6 +368,7 @@ class Job( object, HasJobMetrics, Dictifiable ):
         self.destination_id = None
         self.destination_params = None
         self.post_job_actions = []
+        self.state_history = []
         self.imported = False
         self.handler = None
         self.exit_code = None
@@ -657,7 +670,7 @@ class Job( object, HasJobMetrics, Dictifiable ):
             self.workflow_invocation_step.update()
 
 
-class Task( object, HasJobMetrics ):
+class Task( object, JobLike ):
     """
     A task represents a single component of a job.
     """
diff --git a/lib/galaxy/tools/parameters/basic.py b/lib/galaxy/tools/parameters/basic.py
index 51cda184de6..e42b90146ad 100644
--- a/lib/galaxy/tools/parameters/basic.py
+++ b/lib/galaxy/tools/parameters/basic.py
@@ -273,9 +273,10 @@ class TextToolParameter( ToolParameter ):
     def to_string( self, value, app ):
         """Convert a value to a string representation suitable for persisting"""
         if value is None:
-            return ''
+            rval = ''
         else:
-            return str( value )
+            rval = util.smart_str( value )
+        return rval
 
     def to_html_value( self, value, app ):
         if value is None:
diff --git a/lib/galaxy/web/framework/webapp.py b/lib/galaxy/web/framework/webapp.py
index a8bdc7d751e..f549e0a4e56 100644
--- a/lib/galaxy/web/framework/webapp.py
+++ b/lib/galaxy/web/framework/webapp.py
@@ -390,9 +390,10 @@ class GalaxyWebTransaction( base.DefaultWebTransaction,
                     # No user, associate
                     galaxy_session.user = self.get_or_create_remote_user( remote_user_email )
                     galaxy_session_requires_flush = True
-                elif ((galaxy_session.user.email != remote_user_email) and
+                elif (not remote_user_email.startswith('(null)') and  # Apache does this, see remoteuser.py
+                      (galaxy_session.user.email != remote_user_email) and
                       ((not self.app.config.allow_user_impersonation) or
-                      (remote_user_email not in self.app.config.admin_users_list))):
+                       (remote_user_email not in self.app.config.admin_users_list))):
                     # Session exists but is not associated with the correct
                     # remote user, and the currently set remote_user is not a
                     # potentially impersonating admin.
diff --git a/lib/galaxy/webapps/galaxy/api/history_contents.py b/lib/galaxy/webapps/galaxy/api/history_contents.py
index c06fe218052..138e8c0734c 100644
--- a/lib/galaxy/webapps/galaxy/api/history_contents.py
+++ b/lib/galaxy/webapps/galaxy/api/history_contents.py
@@ -348,7 +348,7 @@ class HistoryContentsController( BaseAPIController, UsesLibraryMixin, UsesLibrar
         :type   history_id: str
         :param  history_id: encoded id string of the HDA's History
         :type   id:         str
-        :param  id:         the encoded id of the history to undelete
+        :param  id:         the encoded id of the history to update
         :type   payload:    dict
         :param  payload:    a dictionary containing any or all the
             fields in :func:`galaxy.model.HistoryDatasetAssociation.to_dict`
diff --git a/lib/galaxy/webapps/galaxy/api/users.py b/lib/galaxy/webapps/galaxy/api/users.py
index 1b65e162e50..6feb1a42994 100644
--- a/lib/galaxy/webapps/galaxy/api/users.py
+++ b/lib/galaxy/webapps/galaxy/api/users.py
@@ -6,9 +6,8 @@ import logging
 
 from sqlalchemy import false, true
 
-from galaxy import exceptions
-from galaxy import util
-from galaxy import web
+from galaxy import exceptions, util, web
+from galaxy.managers import users
 from galaxy.security.validate_user_input import validate_email
 from galaxy.security.validate_user_input import validate_password
 from galaxy.security.validate_user_input import validate_publicname
@@ -24,6 +23,11 @@ log = logging.getLogger( __name__ )
 
 class UserAPIController( BaseAPIController, UsesTagsMixin, CreatesUsersMixin, CreatesApiKeysMixin ):
 
+    def __init__(self, app):
+        super(UserAPIController, self).__init__(app)
+        self.user_manager = users.UserManager(app)
+        self.user_serializer = users.UserSerializer( app )
+
     @expose_api
     def index( self, trans, deleted='False', f_email=None, **kwd ):
         """
@@ -89,16 +93,7 @@ class UserAPIController( BaseAPIController, UsesTagsMixin, CreatesUsersMixin, Cr
                 assert not user.deleted
         except:
             raise exceptions.RequestParameterInvalidException( 'Invalid user id specified', id=id )
-
-        item = user.to_dict( view='element', value_mapper={ 'id': trans.security.encode_id,
-                                                            'total_disk_usage': float } )
-        # add a list of tags used by the user (as strings)
-        item[ 'tags_used' ] = self.get_user_tags_used( trans, user=user )
-        # TODO: move into api_values (needs trans, tho - can we do that with api_keys/@property??)
-        # TODO: works with other users (from admin)??
-        item[ 'quota_percent' ] = trans.app.quota_agent.get_percent( trans=trans )
-        item[ 'is_admin' ] = trans.user_is_admin()
-        return item
+        return self.user_serializer.serialize_to_view(user, view='detailed')
 
     @expose_api
     def create( self, trans, payload, **kwd ):
@@ -143,10 +138,29 @@ class UserAPIController( BaseAPIController, UsesTagsMixin, CreatesUsersMixin, Cr
         raise exceptions.NotImplemented()
 
     @expose_api
-    def delete( self, trans, **kwd ):
-        raise exceptions.NotImplemented()
+    @web.require_admin
+    def delete( self, trans, id, **kwd ):
+        """
+        DELETE /api/users/{id}
+        delete the user with the given ``id``
+
+        :param id: the encoded id of the user to delete
+        :type  id: str
+
+        :param purge: (optional) if True, purge the user
+        :type  purge: bool
+        """
+        if not trans.app.config.allow_user_deletion:
+            raise exceptions.ConfigDoesNotAllowException( 'The configuration of this Galaxy instance does not allow admins to delete users.' )
+        purge = util.string_as_bool(kwd.get('purge', False))
+        if purge:
+            raise exceptions.NotImplemented('Purge option has not been implemented yet')
+        user = self.get_user(trans, id)
+        self.user_manager.delete(user)
+        return self.user_serializer.serialize_to_view(user, view='detailed')
 
     @expose_api
+    @web.require_admin
     def undelete( self, trans, **kwd ):
         raise exceptions.NotImplemented()
 
diff --git a/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py b/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py
index 40c7dbd6942..e4e3e3a65cb 100755
--- a/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py
+++ b/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py
@@ -998,7 +998,7 @@ class SetEnvironment( RecipeStep ):
         cmds = install_environment.environment_commands( 'set_environment' )
         env_var_dicts = action_dict.get( 'environment_variable', [] )
         root_dir_dict = dict( action='set_to',
-                              name='%s_ROOT_DIR' % tool_dependency.name.replace( '-', '_' ).upper(),
+                              name='%s_ROOT_DIR' % re.sub( r"[^A-Z0-9_]", "_", tool_dependency.name.upper() ),
                               value=install_environment.install_dir )
         env_var_dicts.append( root_dir_dict )
         for env_var_dict in env_var_dicts:
diff --git a/run.sh b/run.sh
index 2f201996712..9a655b50968 100755
--- a/run.sh
+++ b/run.sh
@@ -69,6 +69,13 @@ fi
 
 python ./scripts/check_python.py || exit 1
 
+if [ ! -z "$GALAXY_RUN_WITH_TEST_TOOLS" ];
+then
+    export GALAXY_CONFIG_OVERRIDE_TOOL_CONFIG_FILE="test/functional/tools/samples_tool_conf.xml"
+    export GALAXY_CONFIG_ENABLE_BETA_WORKFLOW_MODULES="true"
+    export GALAXY_CONFIG_OVERRIDE_ENABLE_BETA_TOOL_FORMATS="true"
+fi
+
 if [ -n "$GALAXY_UNIVERSE_CONFIG_DIR" ]; then
     python ./scripts/build_universe_config.py "$GALAXY_UNIVERSE_CONFIG_DIR"
 fi
diff --git a/scripts/check_eggs.py b/scripts/check_eggs.py
new file mode 120000
index 00000000000..9ed1ea67637
--- /dev/null
+++ b/scripts/check_eggs.py
@@ -0,0 +1 @@
+fetch_eggs.py
\ No newline at end of file
diff --git a/scripts/fetch_eggs.py b/scripts/fetch_eggs.py
new file mode 100755
index 00000000000..d3ee94c7a1d
--- /dev/null
+++ b/scripts/fetch_eggs.py
@@ -0,0 +1,32 @@
+#!/usr/bin/env python
+
+from os import pardir
+from os.path import join, abspath, dirname
+from sys import exit
+
+msg = """
+Eggs in this release of Galaxy have been replaced by Python's newer packaging
+format, wheels. Please use scripts/common_startup.sh to set up your
+environment:
+
+cd {dir} && ./scripts/common_startup.sh
+
+This will create a Python virtualenv and install Galaxy's dependencies into it.
+
+If you start Galaxy using means other than run.sh (as you probably do if you
+are seeing this message), be sure to activate the virtualenv before starting,
+using:
+
+. {venv}/bin/activate
+
+If you already run Galaxy in its own virtualenv, you can reuse your existing
+virtualenv with:
+
+cd {dir} && ./scripts/common_startup.sh --skip-venv
+"""
+
+galaxy = abspath(join(dirname(__file__), pardir))
+venv = join(galaxy, '.venv')
+print msg.format(dir=abspath(join(dirname(__file__), pardir)),
+                 venv=venv)
+exit(1)
diff --git a/static/maps/galaxy-app-base.js.map b/static/maps/galaxy-app-base.js.map
index 213ee77f04d..2bc1fcc5ae1 100644
--- a/static/maps/galaxy-app-base.js.map
+++ b/static/maps/galaxy-app-base.js.map
@@ -1 +1 @@
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diff --git a/static/maps/libs/jquery/select2.js.map b/static/maps/libs/jquery/select2.js.map
index 757ca10c689..b2cebe1e557 100644
--- a/static/maps/libs/jquery/select2.js.map
+++ b/static/maps/libs/jquery/select2.js.map
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\ No newline at end of file
diff --git a/static/maps/mvc/collection/list-of-pairs-collection-creator.js.map b/static/maps/mvc/collection/list-of-pairs-collection-creator.js.map
index 76a286d706a..528abfb0b18 100644
--- a/static/maps/mvc/collection/list-of-pairs-collection-creator.js.map
+++ b/static/maps/mvc/collection/list-of-pairs-collection-creator.js.map
@@ -1 +1 @@
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\ No newline at end of file
diff --git a/static/maps/mvc/form/form-parameters.js.map b/static/maps/mvc/form/form-parameters.js.map
index 3f2f81e9e05..bda6b832cc4 100644
--- a/static/maps/mvc/form/form-parameters.js.map
+++ b/static/maps/mvc/form/form-parameters.js.map
@@ -1 +1 @@
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diff --git a/static/maps/mvc/form/form-repeat.js.map b/static/maps/mvc/form/form-repeat.js.map
index e08e1b70ee2..cf08f6c1842 100644
--- a/static/maps/mvc/form/form-repeat.js.map
+++ b/static/maps/mvc/form/form-repeat.js.map
@@ -1 +1 @@
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diff --git a/static/maps/mvc/form/form-select-content.js.map b/static/maps/mvc/form/form-select-content.js.map
index 5f84d12f797..b6eb5bc62db 100644
--- a/static/maps/mvc/form/form-select-content.js.map
+++ b/static/maps/mvc/form/form-select-content.js.map
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diff --git a/static/maps/mvc/form/form-view.js.map b/static/maps/mvc/form/form-view.js.map
index 46cc80d43ba..7f9115196cd 100644
--- a/static/maps/mvc/form/form-view.js.map
+++ b/static/maps/mvc/form/form-view.js.map
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diff --git a/static/maps/mvc/grid/grid-template.js.map b/static/maps/mvc/grid/grid-template.js.map
index 1219e2e7906..642528da5f2 100644
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diff --git a/static/maps/mvc/library/library-folderrow-view.js.map b/static/maps/mvc/library/library-folderrow-view.js.map
index 4a36934baef..ef741012f21 100644
--- a/static/maps/mvc/library/library-folderrow-view.js.map
+++ b/static/maps/mvc/library/library-folderrow-view.js.map
@@ -1 +1 @@
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diff --git a/static/maps/mvc/tools/tools-form-workflow.js.map b/static/maps/mvc/tools/tools-form-workflow.js.map
index 2930cdc1171..6bd62c0b335 100644
--- a/static/maps/mvc/tools/tools-form-workflow.js.map
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diff --git a/static/maps/mvc/tools/tools-jobs.js.map b/static/maps/mvc/tools/tools-jobs.js.map
index 5d269782faa..b88691bf9d6 100644
--- a/static/maps/mvc/tools/tools-jobs.js.map
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diff --git a/static/maps/mvc/ui/ui-select-default.js.map b/static/maps/mvc/ui/ui-select-default.js.map
index 37519334c9f..5bf8e128cc6 100644
--- a/static/maps/mvc/ui/ui-select-default.js.map
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diff --git a/static/maps/mvc/upload/upload-button.js.map b/static/maps/mvc/upload/upload-button.js.map
index 3ac84472347..7b723f389ea 100644
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diff --git a/static/maps/utils/deferred.js.map b/static/maps/utils/deferred.js.map
index 302c894bd77..31ff459570d 100644
--- a/static/maps/utils/deferred.js.map
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diff --git a/static/maps/utils/uploadbox.js.map b/static/maps/utils/uploadbox.js.map
index d3cda5640d0..e2599be15e1 100644
--- a/static/maps/utils/uploadbox.js.map
+++ b/static/maps/utils/uploadbox.js.map
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\ No newline at end of file
diff --git a/static/scripts/galaxy-app-base.js b/static/scripts/galaxy-app-base.js
index 92c3a588465..43516a06093 100644
--- a/static/scripts/galaxy-app-base.js
+++ b/static/scripts/galaxy-app-base.js
@@ -1,2 +1,2 @@
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+define(["libs/underscore","libs/backbone","mvc/base-mvc","mvc/user/user-model","utils/metrics-logger","utils/add-logging","utils/localization"],function(a,b,c,d,e,f,g){function h(a,b){var c=this;return c._init(a||{},b||{})}f(h,"GalaxyApp");var i="galaxy:debug",j=i+":namespaces",k=!1;try{k="true"==localStorage.getItem(i)}catch(l){console.log(g("localStorage not available for debug flag retrieval"))}return h.prototype._init=function(c,d){var e=this;return a.extend(e,b.Events),k&&(e.logger=console,console.debug("debugging galaxy:","options:",c,"bootstrapped:",d)),e._processOptions(c),e.root=c.root||"/",e._initConfig(c.config||d.config||{}),e._patchGalaxy(window.Galaxy),e._initLogger(e.options.loggerOptions||{}),e.debug("GalaxyApp.options: ",e.options),e.debug("GalaxyApp.config: ",e.config),e.debug("GalaxyApp.logger: ",e.logger),e._initLocale(),e.debug("GalaxyApp.localize: ",e.localize),e.config=c.config||{},e.debug("GalaxyApp.config: ",e.config),e._initUser(c.user||{}),e.debug("GalaxyApp.user: ",e.user),e._setUpListeners(),e.trigger("ready",e),e},h.prototype.defaultOptions={patchExisting:!0,root:"/"},h.prototype._processOptions=function(a){var b=this,c=b.defaultOptions;b.options={};for(var d in c)c.hasOwnProperty(d)&&(b.options[d]=a.hasOwnProperty(d)?a[d]:c[d]);return b},h.prototype._initConfig=function(a){var b=this;return b.config=a,b.config.debug=k||b.config.debug,b},h.prototype._patchGalaxy=function(a){var b=this;if(b.options.patchExisting&&a)for(var c in a)a.hasOwnProperty(c)&&(b[c]=a[c])},h.prototype._initLogger=function(a){var b=this;if(b.config.debug){a.consoleLogger=a.consoleLogger||console,a.consoleLevel=a.consoleLevel||e.MetricsLogger.ALL;try{a.consoleNamespaceWhitelist=localStorage.getItem(j).split(",")}catch(d){}}return b.logger=new e.MetricsLogger(a),b.emit={},["log","debug","info","warn","error","metric"].map(function(a){b.emit[a]=function(){b.logger.emit(a,arguments[0],Array.prototype.slice.call(arguments,1))}}),b.config.debug&&(c.LoggableMixin.logger=b.logger),b},h.prototype._initLocale=function(a){var b=this;return b.debug("_initLocale:",a),b.localize=g,window._l=b.localize,b},h.prototype._initUser=function(a){var b=this;return b.debug("_initUser:",a),b.user=new d.User(a),b.user.logger=b.logger,b.currUser=b.user,b},h.prototype._setUpListeners=function(){var a=this;return a.lastAjax={},$(document).bind("ajaxSend",function(b,c,d){var e=d.data;try{e=JSON.parse(e)}catch(f){}a.lastAjax={url:location.href.slice(0,-1)+d.url,data:e}}),a},h.prototype.debugging=function(a){var b=this;try{if(void 0===a)return"true"===localStorage.getItem(i);if(a)return localStorage.setItem(i,!0),!0;localStorage.removeItem(i),b.debuggingNamespaces(null)}catch(c){console.log(g("localStorage not available for debug flag retrieval"))}return!1},h.prototype.debuggingNamespaces=function(a){var b=this;try{if(void 0===a){var c=localStorage.getItem(j);return"string"==typeof c?c.split(","):[]}null===a?localStorage.removeItem(j):localStorage.setItem(j,a);var d=b.debuggingNamespaces();return b.logger&&(b.logger.options.consoleNamespaceWhitelist=d),d}catch(e){console.log(g("localStorage not available for debug namespace retrieval"))}},h.prototype.toString=function(){var a=this.user?this.user.get("email")||"(anonymous)":"uninitialized";return"GalaxyApp("+a+")"},{GalaxyApp:h}});
 //# sourceMappingURL=../maps/galaxy-app-base.js.map
\ No newline at end of file
diff --git a/static/scripts/libs/jquery/select2.js b/static/scripts/libs/jquery/select2.js
index 2d4d533501e..1159cf07cb2 100755
--- a/static/scripts/libs/jquery/select2.js
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a=this.opts.element,c=a.data("select2"),d=this;this.close(),a.length&&a[0].detachEvent&&a.each(function(){this.detachEvent("onpropertychange",d._sync)}),this.propertyObserver&&(this.propertyObserver.disconnect(),this.propertyObserver=null),this._sync=null,c!==b&&(c.container.remove(),c.liveRegion.remove(),c.dropdown.remove(),a.removeClass("select2-offscreen").removeData("select2").off(".select2").prop("autofocus",this.autofocus||!1),this.elementTabIndex?a.attr({tabindex:this.elementTabIndex}):a.removeAttr("tabindex"),a.show()),C.call(this,"container","liveRegion","dropdown","results","search")},optionToData:function(a){return a.is("option")?{id:a.prop("value"),text:a.text(),element:a.get(),css:a.attr("class"),disabled:a.prop("disabled"),locked:g(a.attr("locked"),"locked")||g(a.data("locked"),!0)}:a.is("optgroup")?{text:a.attr("label"),children:[],element:a.get(),css:a.attr("class")}:void 0},prepareOpts:function(c){var d,e,f,i,j=this;if(d=c.element,"select"===d.get(0).tagName.toLowerCase()&&(this.select=e=c.element),e&&a.each(["id","multiple","ajax","query","createSearchChoice","initSelection","data","tags"],function(){if(this in c)throw new Error("Option '"+this+"' is not allowed for Select2 when attached to a <select> element.")}),c=a.extend({},{populateResults:function(d,e,f){var g,h=this.opts.id,i=this.liveRegion;(g=function(d,e,k){var l,m,n,o,p,q,r,s,t,u;d=c.sortResults(d,e,f);var 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b={id:this,text:this},d=c.tags;a.isFunction(d)&&(d=d()),a(d).each(function(){return g(this.id,b.id)?(b=this,!1):void 0}),e.push(b)}),d(e)}))),"function"!=typeof c.query)throw"query function not defined for Select2 "+c.element.attr("id");if("top"===c.createSearchChoicePosition)c.createSearchChoicePosition=function(a,b){a.unshift(b)};else if("bottom"===c.createSearchChoicePosition)c.createSearchChoicePosition=function(a,b){a.push(b)};else if("function"!=typeof c.createSearchChoicePosition)throw"invalid createSearchChoicePosition option must be 'top', 'bottom' or a custom function";return c},monitorSource:function(){var c,d=this.opts.element,e=this;d.on("change.select2",this.bind(function(){this.opts.element.data("select2-change-triggered")!==!0&&this.initSelection()})),this._sync=this.bind(function(){var a=d.prop("disabled");a===b&&(a=!1),this.enable(!a);var 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j.scrollTop(0);b=this.findHighlightableChoices().find(".select2-result-label"),d=a(b[c]),i=(d.offset()||{}).top||0,e=i+d.outerHeight(!0),c===b.length-1&&(h=j.find("li.select2-more-results"),h.length>0&&(e=h.offset().top+h.outerHeight(!0))),f=j.offset().top+j.outerHeight(!0),e>f&&j.scrollTop(j.scrollTop()+(e-f)),g=i-j.offset().top,0>g&&"none"!=d.css("display")&&j.scrollTop(j.scrollTop()+g)}},findHighlightableChoices:function(){return this.results.find(".select2-result-selectable:not(.select2-disabled):not(.select2-selected)")},moveHighlight:function(b){for(var c=this.findHighlightableChoices(),d=this.highlight();d>-1&&d<c.length;){d+=b;var e=a(c[d]);if(e.hasClass("select2-result-selectable")&&!e.hasClass("select2-disabled")&&!e.hasClass("select2-selected")){this.highlight(d);break}}},highlight:function(b){var c,d,f=this.findHighlightableChoices();return 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d(){j.removeClass("select2-active"),m.positionDropdown(),m.liveRegion.text(k.find(".select2-no-results,.select2-selection-limit,.select2-searching").length?k.text():m.opts.formatMatches(k.find(".select2-result-selectable").length))}function e(a){k.html(a),d()}var f,h,i,j=this.search,k=this.results,l=this.opts,m=this,n=j.val(),o=a.data(this.container,"select2-last-term");if((c===!0||!o||!g(n,o))&&(a.data(this.container,"select2-last-term",n),c===!0||this.showSearchInput!==!1&&this.opened())){i=++this.queryCount;var p=this.getMaximumSelectionSize();if(p>=1&&(f=this.data(),a.isArray(f)&&f.length>=p&&y(l.formatSelectionTooBig,"formatSelectionTooBig")))return void e("<li class='select2-selection-limit'>"+z(l.formatSelectionTooBig,l.element,p)+"</li>");if(j.val().length<l.minimumInputLength)return e(y(l.formatInputTooShort,"formatInputTooShort")?"<li 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b=this.highlight(),c=this.results.find(".select2-highlighted"),d=c.closest(".select2-result").data("select2-data");d?(this.highlight(b),this.onSelect(d,a)):a&&a.noFocus&&this.close()},getPlaceholder:function(){var a;return this.opts.element.attr("placeholder")||this.opts.element.attr("data-placeholder")||this.opts.element.data("placeholder")||this.opts.placeholder||((a=this.getPlaceholderOption())!==b?a.text():b)},getPlaceholderOption:function(){if(this.select){var c=this.select.children("option").first();if(this.opts.placeholderOption!==b)return"first"===this.opts.placeholderOption&&c||"function"==typeof this.opts.placeholderOption&&this.opts.placeholderOption(this.select);if(""===a.trim(c.text())&&""===c.val())return c}},initContainerWidth:function(){function c(){var c,d,e,f,g,h;if("off"===this.opts.width)return null;if("element"===this.opts.width)return 0===this.opts.element.outerWidth(!1)?"auto":this.opts.element.outerWidth(!1)+"px";if("copy"===this.opts.width||"resolve"===this.opts.width){if(c=this.opts.element.attr("style"),c!==b)for(d=c.split(";"),f=0,g=d.length;g>f;f+=1)if(h=d[f].replace(/\s/g,""),e=h.match(/^width:(([-+]?([0-9]*\.)?[0-9]+)(px|em|ex|%|in|cm|mm|pt|pc))/i),null!==e&&e.length>=1)return e[1];return"resolve"===this.opts.width?(c=this.opts.element.css("width"),c.indexOf("%")>0?c:0===this.opts.element.outerWidth(!1)?"auto":this.opts.element.outerWidth(!1)+"px"):null}return a.isFunction(this.opts.width)?this.opts.width():this.opts.width}var d=c.call(this);null!==d&&this.container.css("width",d)}}),G=D(F,{createContainer:function(){var b=a(document.createElement("div")).attr({"class":"select2-container"}).html(["<a href='javascript:void(0)' class='select2-choice' tabindex='-1'>","   <span class='select2-chosen'>&#160;</span><abbr class='select2-search-choice-close'></abbr>","   <span class='select2-arrow' role='presentation'><b role='presentation'></b></span>","</a>","<label for='' class='select2-offscreen'></label>","<input class='select2-focusser select2-offscreen' type='text' aria-haspopup='true' role='button' />","<div class='select2-drop select2-display-none'>","   <div class='select2-search'>","       <label for='' class='select2-offscreen'></label>","       <input type='text' autocomplete='off' autocorrect='off' autocapitalize='off' spellcheck='false' class='select2-input' role='combobox' aria-expanded='true'","       aria-autocomplete='list' />","   </div>","   <ul class='select2-results' role='listbox'>","   </ul>","</div>"].join(""));return b},enableInterface:function(){this.parent.enableInterface.apply(this,arguments)&&this.focusser.prop("disabled",!this.isInterfaceEnabled())},opening:function(){var c,d,e;this.opts.minimumResultsForSearch>=0&&this.showSearch(!0),this.parent.opening.apply(this,arguments),this.showSearchInput!==!1&&this.search.val(this.focusser.val()),this.opts.shouldFocusInput(this)&&(this.search.focus(),c=this.search.get(0),c.createTextRange?(d=c.createTextRange(),d.collapse(!1),d.select()):c.setSelectionRange&&(e=this.search.val().length,c.setSelectionRange(e,e))),""===this.search.val()&&this.nextSearchTerm!=b&&(this.search.val(this.nextSearchTerm),this.search.select()),this.focusser.prop("disabled",!0).val(""),this.updateResults(!0),this.opts.element.trigger(a.Event("select2-open"))},close:function(){this.opened()&&(this.parent.close.apply(this,arguments),this.focusser.prop("disabled",!1),this.opts.shouldFocusInput(this)&&this.focusser.focus())},focus:function(){this.opened()?this.close():(this.focusser.prop("disabled",!1),this.opts.shouldFocusInput(this)&&this.focusser.focus())},isFocused:function(){return this.container.hasClass("select2-container-active")},cancel:function(){this.parent.cancel.apply(this,arguments),this.focusser.prop("disabled",!1),this.opts.shouldFocusInput(this)&&this.focusser.focus()},destroy:function(){a("label[for='"+this.focusser.attr("id")+"']").attr("for",this.opts.element.attr("id")),this.parent.destroy.apply(this,arguments),C.call(this,"selection","focusser")},initContainer:function(){var b,d,e=this.container,f=this.dropdown,g=I();this.showSearch(this.opts.minimumResultsForSearch<0?!1:!0),this.selection=b=e.find(".select2-choice"),this.focusser=e.find(".select2-focusser"),b.find(".select2-chosen").attr("id","select2-chosen-"+g),this.focusser.attr("aria-labelledby","select2-chosen-"+g),this.results.attr("id","select2-results-"+g),this.search.attr("aria-owns","select2-results-"+g),this.focusser.attr("id","s2id_autogen"+g),d=a("label[for='"+this.opts.element.attr("id")+"']"),this.focusser.prev().text(d.text()).attr("for",this.focusser.attr("id"));var h=this.opts.element.attr("title");this.opts.element.attr("title",h||d.text()),this.focusser.attr("tabindex",this.elementTabIndex),this.search.attr("id",this.focusser.attr("id")+"_search"),this.search.prev().text(a("label[for='"+this.focusser.attr("id")+"']").text()).attr("for",this.search.attr("id")),this.search.on("keydown",this.bind(function(a){if(this.isInterfaceEnabled()&&229!=a.keyCode){if(a.which===E.PAGE_UP||a.which===E.PAGE_DOWN)return void p(a);switch(a.which){case E.UP:case E.DOWN:return this.moveHighlight(a.which===E.UP?-1:1),void p(a);case E.ENTER:return this.selectHighlighted(),void p(a);case E.TAB:return void this.selectHighlighted({noFocus:!0});case E.ESC:return this.cancel(a),void p(a)}}})),this.search.on("blur",this.bind(function(){document.activeElement===this.body.get(0)&&window.setTimeout(this.bind(function(){this.opened()&&this.search.focus()}),0)})),this.focusser.on("keydown",this.bind(function(a){if(this.isInterfaceEnabled()&&a.which!==E.TAB&&!E.isControl(a)&&!E.isFunctionKey(a)&&a.which!==E.ESC){if(this.opts.openOnEnter===!1&&a.which===E.ENTER)return void p(a);if(a.which==E.DOWN||a.which==E.UP||a.which==E.ENTER&&this.opts.openOnEnter){if(a.altKey||a.ctrlKey||a.shiftKey||a.metaKey)return;return this.open(),void p(a)}return a.which==E.DELETE||a.which==E.BACKSPACE?(this.opts.allowClear&&this.clear(),void p(a)):void 0}})),j(this.focusser),this.focusser.on("keyup-change input",this.bind(function(a){if(this.opts.minimumResultsForSearch>=0){if(a.stopPropagation(),this.opened())return;this.open()}})),b.on("mousedown touchstart","abbr",this.bind(function(a){this.isInterfaceEnabled()&&(this.clear(),q(a),this.close(),this.selection.focus())})),b.on("mousedown touchstart",this.bind(function(d){c(b),this.container.hasClass("select2-container-active")||this.opts.element.trigger(a.Event("select2-focus")),this.opened()?this.close():this.isInterfaceEnabled()&&this.open(),p(d)})),f.on("mousedown touchstart",this.bind(function(){this.opts.shouldFocusInput(this)&&this.search.focus()})),b.on("focus",this.bind(function(a){p(a)})),this.focusser.on("focus",this.bind(function(){this.container.hasClass("select2-container-active")||this.opts.element.trigger(a.Event("select2-focus")),this.container.addClass("select2-container-active")})).on("blur",this.bind(function(){this.opened()||(this.container.removeClass("select2-container-active"),this.opts.element.trigger(a.Event("select2-blur")))})),this.search.on("focus",this.bind(function(){this.container.hasClass("select2-container-active")||this.opts.element.trigger(a.Event("select2-focus")),this.container.addClass("select2-container-active")})),this.initContainerWidth(),this.opts.element.addClass("select2-offscreen"),this.setPlaceholder()},clear:function(b){var c=this.selection.data("select2-data");if(c){var d=a.Event("select2-clearing");if(this.opts.element.trigger(d),d.isDefaultPrevented())return;var e=this.getPlaceholderOption();this.opts.element.val(e?e.val():""),this.selection.find(".select2-chosen").empty(),this.selection.removeData("select2-data"),this.setPlaceholder(),b!==!1&&(this.opts.element.trigger({type:"select2-removed",val:this.id(c),choice:c}),this.triggerChange({removed:c}))}},initSelection:function(){if(this.isPlaceholderOptionSelected())this.updateSelection(null),this.close(),this.setPlaceholder();else{var a=this;this.opts.initSelection.call(null,this.opts.element,function(c){c!==b&&null!==c&&(a.updateSelection(c),a.close(),a.setPlaceholder(),a.nextSearchTerm=a.opts.nextSearchTerm(c,a.search.val()))})}},isPlaceholderOptionSelected:function(){var a;return this.getPlaceholder()===b?!1:(a=this.getPlaceholderOption())!==b&&a.prop("selected")||""===this.opts.element.val()||this.opts.element.val()===b||null===this.opts.element.val()},prepareOpts:function(){var b=this.parent.prepareOpts.apply(this,arguments),c=this;return"select"===b.element.get(0).tagName.toLowerCase()?b.initSelection=function(a,b){var d=a.find("option").filter(function(){return this.selected&&!this.disabled});b(c.optionToData(d))}:"data"in b&&(b.initSelection=b.initSelection||function(c,d){var e=c.val(),f=null;b.query({matcher:function(a,c,d){var h=g(e,b.id(d));return h&&(f=d),h},callback:a.isFunction(d)?function(){d(f)}:a.noop})}),b},getPlaceholder:function(){return this.select&&this.getPlaceholderOption()===b?b:this.parent.getPlaceholder.apply(this,arguments)},setPlaceholder:function(){var a=this.getPlaceholder();if(this.isPlaceholderOptionSelected()&&a!==b){if(this.select&&this.getPlaceholderOption()===b)return;this.selection.find(".select2-chosen").html(this.opts.escapeMarkup(a)),this.selection.addClass("select2-default"),this.container.removeClass("select2-allowclear")}},postprocessResults:function(a,b,c){var d=0,e=this;if(this.findHighlightableChoices().each2(function(a,b){return g(e.id(b.data("select2-data")),e.opts.element.val())?(d=a,!1):void 0}),c!==!1&&this.highlight(b===!0&&d>=0?d:0),b===!0){var f=this.opts.minimumResultsForSearch;f>=0&&this.showSearch(A(a.results)>=f)}},showSearch:function(b){this.showSearchInput!==b&&(this.showSearchInput=b,this.dropdown.find(".select2-search").toggleClass("select2-search-hidden",!b),this.dropdown.find(".select2-search").toggleClass("select2-offscreen",!b),a(this.dropdown,this.container).toggleClass("select2-with-searchbox",b))},onSelect:function(a,b){if(this.triggerSelect(a)){var c=this.opts.element.val(),d=this.data();this.opts.element.val(this.id(a)),this.updateSelection(a),this.opts.element.trigger({type:"select2-selected",val:this.id(a),choice:a}),this.nextSearchTerm=this.opts.nextSearchTerm(a,this.search.val()),this.close(),b&&b.noFocus||!this.opts.shouldFocusInput(this)||this.focusser.focus(),g(c,this.id(a))||this.triggerChange({added:a,removed:d})}},updateSelection:function(a){var c,d,e=this.selection.find(".select2-chosen");this.selection.data("select2-data",a),e.empty(),null!==a&&(c=this.opts.formatSelection(a,e,this.opts.escapeMarkup)),c!==b&&e.append(c),d=this.opts.formatSelectionCssClass(a,e),d!==b&&e.addClass(d),this.selection.removeClass("select2-default"),this.opts.allowClear&&this.getPlaceholder()!==b&&this.container.addClass("select2-allowclear")},val:function(){var a,c=!1,d=null,e=this,f=this.data();if(0===arguments.length)return this.opts.element.val();if(a=arguments[0],arguments.length>1&&(c=arguments[1]),this.select)this.select.val(a).find("option").filter(function(){return this.selected}).each2(function(a,b){return d=e.optionToData(b),!1}),this.updateSelection(d),this.setPlaceholder(),c&&this.triggerChange({added:d,removed:f});else{if(!a&&0!==a)return void this.clear(c);if(this.opts.initSelection===b)throw new Error("cannot call val() if initSelection() is not defined");this.opts.element.val(a),this.opts.initSelection(this.opts.element,function(a){e.opts.element.val(a?e.id(a):""),e.updateSelection(a),e.setPlaceholder(),c&&e.triggerChange({added:a,removed:f})})}},clearSearch:function(){this.search.val(""),this.focusser.val("")},data:function(a){var c,d=!1;return 0===arguments.length?(c=this.selection.data("select2-data"),c==b&&(c=null),c):(arguments.length>1&&(d=arguments[1]),void(a?(c=this.data(),this.opts.element.val(a?this.id(a):""),this.updateSelection(a),d&&this.triggerChange({added:a,removed:c})):this.clear(d)))}}),H=D(F,{createContainer:function(){var b=a(document.createElement("div")).attr({"class":"select2-container select2-container-multi"}).html(["<ul class='select2-choices'>","  <li class='select2-search-field'>","    <label for='' class='select2-offscreen'></label>","    <input type='text' autocomplete='off' autocorrect='off' autocapitalize='off' spellcheck='false' class='select2-input'>","  </li>","</ul>","<div class='select2-drop select2-drop-multi select2-display-none'>","   <ul class='select2-results'>","   </ul>","</div>"].join(""));return b},prepareOpts:function(){var b=this.parent.prepareOpts.apply(this,arguments),c=this;return"select"===b.element.get(0).tagName.toLowerCase()?b.initSelection=function(a,b){var d=[];a.find("option").filter(function(){return this.selected&&!this.disabled}).each2(function(a,b){d.push(c.optionToData(b))}),b(d)}:"data"in b&&(b.initSelection=b.initSelection||function(c,d){var e=h(c.val(),b.separator),f=[];b.query({matcher:function(c,d,h){var i=a.grep(e,function(a){return g(a,b.id(h))}).length;return i&&f.push(h),i},callback:a.isFunction(d)?function(){for(var a=[],c=0;c<e.length;c++)for(var h=e[c],i=0;i<f.length;i++){var j=f[i];if(g(h,b.id(j))){a.push(j),f.splice(i,1);break}}d(a)}:a.noop})}),b},selectChoice:function(a){var b=this.container.find(".select2-search-choice-focus");b.length&&a&&a[0]==b[0]||(b.length&&this.opts.element.trigger("choice-deselected",b),b.removeClass("select2-search-choice-focus"),a&&a.length&&(this.close(),a.addClass("select2-search-choice-focus"),this.opts.element.trigger("choice-selected",a)))},destroy:function(){a("label[for='"+this.search.attr("id")+"']").attr("for",this.opts.element.attr("id")),this.parent.destroy.apply(this,arguments),C.call(this,"searchContainer","selection")},initContainer:function(){var b,c=".select2-choices";this.searchContainer=this.container.find(".select2-search-field"),this.selection=b=this.container.find(c);var d=this;this.selection.on("click",".select2-search-choice:not(.select2-locked)",function(){d.search[0].focus(),d.selectChoice(a(this))}),this.search.attr("id","s2id_autogen"+I()),this.search.prev().text(a("label[for='"+this.opts.element.attr("id")+"']").text()).attr("for",this.search.attr("id")),this.search.on("input paste",this.bind(function(){this.search.attr("placeholder")&&0==this.search.val().length||this.isInterfaceEnabled()&&(this.opened()||this.open())})),this.search.attr("tabindex",this.elementTabIndex),this.keydowns=0,this.search.on("keydown",this.bind(function(a){if(this.isInterfaceEnabled()){++this.keydowns;var c=b.find(".select2-search-choice-focus"),d=c.prev(".select2-search-choice:not(.select2-locked)"),e=c.next(".select2-search-choice:not(.select2-locked)"),f=o(this.search);if(c.length&&(a.which==E.LEFT||a.which==E.RIGHT||a.which==E.BACKSPACE||a.which==E.DELETE||a.which==E.ENTER)){var g=c;return a.which==E.LEFT&&d.length?g=d:a.which==E.RIGHT?g=e.length?e:null:a.which===E.BACKSPACE?this.unselect(c.first())&&(this.search.width(10),g=d.length?d:e):a.which==E.DELETE?this.unselect(c.first())&&(this.search.width(10),g=e.length?e:null):a.which==E.ENTER&&(g=null),this.selectChoice(g),p(a),void(g&&g.length||this.open())}if((a.which===E.BACKSPACE&&1==this.keydowns||a.which==E.LEFT)&&0==f.offset&&!f.length)return this.selectChoice(b.find(".select2-search-choice:not(.select2-locked)").last()),void p(a);if(this.selectChoice(null),this.opened())switch(a.which){case E.UP:case E.DOWN:return this.moveHighlight(a.which===E.UP?-1:1),void p(a);case E.ENTER:return this.selectHighlighted(),void p(a);case E.TAB:return this.selectHighlighted({noFocus:!0}),void this.close();case E.ESC:return this.cancel(a),void p(a)}if(a.which!==E.TAB&&!E.isControl(a)&&!E.isFunctionKey(a)&&a.which!==E.BACKSPACE&&a.which!==E.ESC){if(a.which===E.ENTER){if(this.opts.openOnEnter===!1)return;if(a.altKey||a.ctrlKey||a.shiftKey||a.metaKey)return}this.open(),(a.which===E.PAGE_UP||a.which===E.PAGE_DOWN)&&p(a),a.which===E.ENTER&&p(a)}}})),this.search.on("keyup",this.bind(function(){this.keydowns=0,this.resizeSearch()})),this.search.on("blur",this.bind(function(b){this.container.removeClass("select2-container-active"),this.search.removeClass("select2-focused"),this.selectChoice(null),this.opened()||this.clearSearch(),b.stopImmediatePropagation(),this.opts.element.trigger(a.Event("select2-blur"))})),this.container.on("click",c,this.bind(function(b){this.isInterfaceEnabled()&&(a(b.target).closest(".select2-search-choice").length>0||(this.selectChoice(null),this.clearPlaceholder(),this.container.hasClass("select2-container-active")||this.opts.element.trigger(a.Event("select2-focus")),this.open(),this.focusSearch(),b.preventDefault()))})),this.container.on("focus",c,this.bind(function(){this.isInterfaceEnabled()&&(this.container.hasClass("select2-container-active")||this.opts.element.trigger(a.Event("select2-focus")),this.container.addClass("select2-container-active"),this.dropdown.addClass("select2-drop-active"),this.clearPlaceholder())})),this.initContainerWidth(),this.opts.element.addClass("select2-offscreen"),this.clearSearch()},enableInterface:function(){this.parent.enableInterface.apply(this,arguments)&&this.search.prop("disabled",!this.isInterfaceEnabled())},initSelection:function(){if(""===this.opts.element.val()&&""===this.opts.element.text()&&(this.updateSelection([]),this.close(),this.clearSearch()),this.select||""!==this.opts.element.val()){var a=this;this.opts.initSelection.call(null,this.opts.element,function(c){c!==b&&null!==c&&(a.updateSelection(c),a.close(),a.clearSearch())})}},clearSearch:function(){var a=this.getPlaceholder(),c=this.getMaxSearchWidth();a!==b&&0===this.getVal().length&&this.search.hasClass("select2-focused")===!1?(this.search.val(a).addClass("select2-default"),this.search.width(c>0?c:this.container.css("width"))):this.search.val("").width(10)},clearPlaceholder:function(){this.search.hasClass("select2-default")&&this.search.val("").removeClass("select2-default")},opening:function(){this.clearPlaceholder(),this.resizeSearch(),this.parent.opening.apply(this,arguments),this.focusSearch(),""===this.search.val()&&this.nextSearchTerm!=b&&(this.search.val(this.nextSearchTerm),this.search.select()),this.updateResults(!0),this.opts.shouldFocusInput(this)&&this.search.focus(),this.opts.element.trigger(a.Event("select2-open"))},close:function(){this.opened()&&this.parent.close.apply(this,arguments)},focus:function(){this.close(),this.search.focus()},isFocused:function(){return this.search.hasClass("select2-focused")},updateSelection:function(b){var c=[],d=[],f=this;a(b).each(function(){e(f.id(this),c)<0&&(c.push(f.id(this)),d.push(this))}),b=d,this.selection.find(".select2-search-choice").remove(),a(b).each(function(){f.addSelectedChoice(this)}),f.postprocessResults()},tokenize:function(){var a=this.search.val();a=this.opts.tokenizer.call(this,a,this.data(),this.bind(this.onSelect),this.opts),null!=a&&a!=b&&(this.search.val(a),a.length>0&&this.open())},onSelect:function(a,c){this.triggerSelect(a)&&""!==a.text&&(this.addSelectedChoice(a),this.opts.element.trigger({type:"selected",val:this.id(a),choice:a}),this.nextSearchTerm=this.opts.nextSearchTerm(a,this.search.val()),this.clearSearch(),this.updateResults(),(this.select||!this.opts.closeOnSelect)&&this.postprocessResults(a,!1,this.opts.closeOnSelect===!0),this.opts.closeOnSelect?(this.close(),this.search.width(10)):this.countSelectableResults()>0?(this.search.width(10),this.resizeSearch(),this.getMaximumSelectionSize()>0&&this.val().length>=this.getMaximumSelectionSize()?this.updateResults(!0):this.nextSearchTerm!=b&&(this.search.val(this.nextSearchTerm),this.updateResults(),this.search.select()),this.positionDropdown()):(this.close(),this.search.width(10)),this.triggerChange({added:a}),c&&c.noFocus||this.focusSearch())},cancel:function(){this.close(),this.focusSearch()},addSelectedChoice:function(c){var d,e,f=!c.locked,g=a("<li class='select2-search-choice'>    <div></div>    <a href='#' class='select2-search-choice-close' tabindex='-1'></a></li>"),h=a("<li class='select2-search-choice select2-locked'><div></div></li>"),i=f?g:h,j=this.id(c),k=this.getVal();d=this.opts.formatSelection(c,i.find("div"),this.opts.escapeMarkup),d!=b&&i.find("div").replaceWith("<div>"+d+"</div>"),e=this.opts.formatSelectionCssClass(c,i.find("div")),e!=b&&i.addClass(e),f&&i.find(".select2-search-choice-close").on("mousedown",p).on("click dblclick",this.bind(function(b){this.isInterfaceEnabled()&&(this.unselect(a(b.target)),this.selection.find(".select2-search-choice-focus").removeClass("select2-search-choice-focus"),p(b),this.close(),this.focusSearch())})).on("focus",this.bind(function(){this.isInterfaceEnabled()&&(this.container.addClass("select2-container-active"),this.dropdown.addClass("select2-drop-active"))})),i.data("select2-data",c),i.insertBefore(this.searchContainer),k.push(j),this.setVal(k)},unselect:function(b){var c,d,f=this.getVal();if(b=b.closest(".select2-search-choice"),0===b.length)throw"Invalid argument: "+b+". Must be .select2-search-choice";if(c=b.data("select2-data")){var g=a.Event("select2-removing");if(g.val=this.id(c),g.choice=c,this.opts.element.trigger(g),g.isDefaultPrevented())return!1;for(;(d=e(this.id(c),f))>=0;)f.splice(d,1),this.setVal(f),this.select&&this.postprocessResults();return b.remove(),this.opts.element.trigger({type:"select2-removed",val:this.id(c),choice:c}),this.triggerChange({removed:c}),!0}},postprocessResults:function(a,b,c){var d=this.getVal(),f=this.results.find(".select2-result"),g=this.results.find(".select2-result-with-children"),h=this;f.each2(function(a,b){var c=h.id(b.data("select2-data"));e(c,d)>=0&&(b.addClass("select2-selected"),b.find(".select2-result-selectable").addClass("select2-selected"))}),g.each2(function(a,b){b.is(".select2-result-selectable")||0!==b.find(".select2-result-selectable:not(.select2-selected)").length||b.addClass("select2-selected")}),-1==this.highlight()&&c!==!1&&h.highlight(0),!this.opts.createSearchChoice&&!f.filter(".select2-result:not(.select2-selected)").length>0&&(!a||a&&!a.more&&0===this.results.find(".select2-no-results").length)&&y(h.opts.formatNoMatches,"formatNoMatches")&&this.results.append("<li class='select2-no-results'>"+z(h.opts.formatNoMatches,h.opts.element,h.search.val())+"</li>")},getMaxSearchWidth:function(){return this.selection.width()-i(this.search)},resizeSearch:function(){var a,b,c,d,e,f=i(this.search);a=r(this.search)+10,b=this.search.offset().left,c=this.selection.width(),d=this.selection.offset().left,e=c-(b-d)-f,a>e&&(e=c-f),40>e&&(e=c-f),0>=e&&(e=a),this.search.width(Math.floor(e))},getVal:function(){var a;return this.select?(a=this.select.val(),null===a?[]:a):(a=this.opts.element.val(),h(a,this.opts.separator))},setVal:function(b){var c;this.select?this.select.val(b):(c=[],a(b).each(function(){e(this,c)<0&&c.push(this)}),this.opts.element.val(0===c.length?"":c.join(this.opts.separator)))},buildChangeDetails:function(a,b){for(var b=b.slice(0),a=a.slice(0),c=0;c<b.length;c++)for(var d=0;d<a.length;d++)g(this.opts.id(b[c]),this.opts.id(a[d]))&&(b.splice(c,1),c>0&&c--,a.splice(d,1),d--);return{added:b,removed:a}},val:function(c,d){var e,f=this;if(0===arguments.length)return this.getVal();if(e=this.data(),e.length||(e=[]),!c&&0!==c)return this.opts.element.val(""),this.updateSelection([]),this.clearSearch(),void(d&&this.triggerChange({added:this.data(),removed:e}));if(this.setVal(c),this.select)this.opts.initSelection(this.select,this.bind(this.updateSelection)),d&&this.triggerChange(this.buildChangeDetails(e,this.data()));else{if(this.opts.initSelection===b)throw new Error("val() cannot be called if initSelection() is not defined");this.opts.initSelection(this.opts.element,function(b){var c=a.map(b,f.id);f.setVal(c),f.updateSelection(b),f.clearSearch(),d&&f.triggerChange(f.buildChangeDetails(e,f.data()))})}this.clearSearch()},onSortStart:function(){if(this.select)throw new Error("Sorting of elements is not supported when attached to <select>. Attach to <input type='hidden'/> instead.");this.search.width(0),this.searchContainer.hide()},onSortEnd:function(){var b=[],c=this;this.searchContainer.show(),this.searchContainer.appendTo(this.searchContainer.parent()),this.resizeSearch(),this.selection.find(".select2-search-choice").each(function(){b.push(c.opts.id(a(this).data("select2-data")))}),this.setVal(b),this.triggerChange()},data:function(b,c){var d,e,f=this;return 0===arguments.length?this.selection.children(".select2-search-choice").map(function(){return a(this).data("select2-data")}).get():(e=this.data(),b||(b=[]),d=a.map(b,function(a){return f.opts.id(a)}),this.setVal(d),this.updateSelection(b),this.clearSearch(),c&&this.triggerChange(this.buildChangeDetails(e,this.data())),void 0)}}),a.fn.select2=function(){var c,d,f,g,h,i=Array.prototype.slice.call(arguments,0),j=["val","destroy","opened","open","close","focus","isFocused","container","dropdown","onSortStart","onSortEnd","enable","disable","readonly","positionDropdown","data","search"],k=["opened","isFocused","container","dropdown"],l=["val","data"],m={search:"externalSearch"};return this.each(function(){if(0===i.length||"object"==typeof i[0])c=0===i.length?{}:a.extend({},i[0]),c.element=a(this),"select"===c.element.get(0).tagName.toLowerCase()?h=c.element.prop("multiple"):(h=c.multiple||!1,"tags"in c&&(c.multiple=h=!0)),d=h?new window.Select2.class.multi:new window.Select2.class.single,d.init(c);else{if("string"!=typeof i[0])throw"Invalid arguments to select2 plugin: "+i;if(e(i[0],j)<0)throw"Unknown method: "+i[0];if(g=b,d=a(this).data("select2"),d===b)return;if(f=i[0],"container"===f?g=d.container:"dropdown"===f?g=d.dropdown:(m[f]&&(f=m[f]),g=d[f].apply(d,i.slice(1))),e(i[0],k)>=0||e(i[0],l)>=0&&1==i.length)return!1}}),g===b?this:g},a.fn.select2.defaults={width:"copy",loadMorePadding:0,closeOnSelect:!0,openOnEnter:!0,containerCss:{},dropdownCss:{},containerCssClass:"",dropdownCssClass:"",formatResult:function(a,b,c,d){var e=[];return t(a.text,c.term,e,d),e.join("")},formatSelection:function(a,c,d){return a?d(a.text):b},sortResults:function(a){return a},formatResultCssClass:function(a){return a.css},formatSelectionCssClass:function(){return b},minimumResultsForSearch:0,minimumInputLength:0,maximumInputLength:null,maximumSelectionSize:0,id:function(a){return a==b?null:a.id},matcher:function(a,b){return d(""+b).toUpperCase().indexOf(d(""+a).toUpperCase())>=0},separator:",",tokenSeparators:[],tokenizer:B,escapeMarkup:u,blurOnChange:!1,selectOnBlur:!1,adaptContainerCssClass:function(a){return a},adaptDropdownCssClass:function(){return null},nextSearchTerm:function(){return b},searchInputPlaceholder:"",createSearchChoicePosition:"top",shouldFocusInput:function(a){var b="ontouchstart"in window||navigator.msMaxTouchPoints>0;return b&&a.opts.minimumResultsForSearch<0?!1:!0}},a.fn.select2.locales=[],a.fn.select2.locales.en={formatMatches:function(a){return 1===a?"One result is available, press enter to select it.":a+" results are available, use up and down arrow keys to navigate."},formatNoMatches:function(){return"No matches found"},formatAjaxError:function(){return"Loading failed"},formatInputTooShort:function(a,b){var c=b-a.length;return"Please enter "+c+" or more character"+(1==c?"":"s")},formatInputTooLong:function(a,b){var c=a.length-b;return"Please delete "+c+" character"+(1==c?"":"s")},formatSelectionTooBig:function(a){return"You can only select "+a+" item"+(1==a?"":"s")},formatLoadMore:function(){return"Loading more results…"},formatSearching:function(){return"Searching…"}},a.extend(a.fn.select2.defaults,a.fn.select2.locales.en),a.fn.select2.ajaxDefaults={transport:a.ajax,params:{type:"GET",cache:!1,dataType:"json"}},window.Select2={query:{ajax:v,local:w,tags:x},util:{debounce:l,markMatch:t,escapeMarkup:u,stripDiacritics:d},"class":{"abstract":F,single:G,multi:H}}}}(jQuery);
+k.empty(),m.opts.populateResults.call(this,k,f.results,{term:j.val(),page:this.resultsPage,context:null}),f.more===!0&&y(l.formatLoadMore,"formatLoadMore")&&(k.append("<li class='select2-more-results'>"+l.escapeMarkup(z(l.formatLoadMore,l.element,this.resultsPage))+"</li>"),window.setTimeout(function(){m.loadMoreIfNeeded()},10)),this.postprocessResults(f,c),d(),this.opts.element.trigger({type:"select2-loaded",items:f})}})})}},cancel:function(){this.close()},blur:function(){this.opts.selectOnBlur&&this.selectHighlighted({noFocus:!0}),this.close(),this.container.removeClass("select2-container-active"),this.search[0]===document.activeElement&&this.search.blur(),this.clearSearch(),this.selection.find(".select2-search-choice-focus").removeClass("select2-search-choice-focus")},focusSearch:function(){n(this.search)},selectHighlighted:function(a){if(this._touchMoved)return void this.clearTouchMoved();var b=this.highlight(),c=this.results.find(".select2-highlighted"),d=c.closest(".select2-result").data("select2-data");d?(this.highlight(b),this.onSelect(d,a)):a&&a.noFocus&&this.close()},getPlaceholder:function(){var a;return this.opts.element.attr("placeholder")||this.opts.element.attr("data-placeholder")||this.opts.element.data("placeholder")||this.opts.placeholder||((a=this.getPlaceholderOption())!==b?a.text():b)},getPlaceholderOption:function(){if(this.select){var c=this.select.children("option").first();if(this.opts.placeholderOption!==b)return"first"===this.opts.placeholderOption&&c||"function"==typeof this.opts.placeholderOption&&this.opts.placeholderOption(this.select);if(""===a.trim(c.text())&&""===c.val())return c}},initContainerWidth:function(){function c(){var c,d,e,f,g,h;if("off"===this.opts.width)return null;if("element"===this.opts.width)return 0===this.opts.element.outerWidth(!1)?"auto":this.opts.element.outerWidth(!1)+"px";if("copy"===this.opts.width||"resolve"===this.opts.width){if(c=this.opts.element.attr("style"),c!==b)for(d=c.split(";"),f=0,g=d.length;g>f;f+=1)if(h=d[f].replace(/\s/g,""),e=h.match(/^width:(([-+]?([0-9]*\.)?[0-9]+)(px|em|ex|%|in|cm|mm|pt|pc))/i),null!==e&&e.length>=1)return e[1];return"resolve"===this.opts.width?(c=this.opts.element.css("width"),c.indexOf("%")>0?c:0===this.opts.element.outerWidth(!1)?"auto":this.opts.element.outerWidth(!1)+"px"):null}return a.isFunction(this.opts.width)?this.opts.width():this.opts.width}var d=c.call(this);null!==d&&this.container.css("width",d)}}),G=D(F,{createContainer:function(){var b=a(document.createElement("div")).attr({"class":"select2-container"}).html(["<a href='javascript:void(0)' class='select2-choice' tabindex='-1'>","   <span class='select2-chosen'>&#160;</span><abbr class='select2-search-choice-close'></abbr>","   <span class='select2-arrow' role='presentation'><b role='presentation'></b></span>","</a>","<label for='' class='select2-offscreen'></label>","<input class='select2-focusser select2-offscreen' type='text' aria-haspopup='true' role='button' />","<div class='select2-drop select2-display-none'>","   <div class='select2-search'>","       <label for='' class='select2-offscreen'></label>","       <input type='text' autocomplete='off' autocorrect='off' autocapitalize='off' spellcheck='false' class='select2-input' role='combobox' aria-expanded='true'","       aria-autocomplete='list' />","   </div>","   <ul class='select2-results' role='listbox'>","   </ul>","</div>"].join(""));return b},enableInterface:function(){this.parent.enableInterface.apply(this,arguments)&&this.focusser.prop("disabled",!this.isInterfaceEnabled())},opening:function(){var c,d,e;this.opts.minimumResultsForSearch>=0&&this.showSearch(!0),this.parent.opening.apply(this,arguments),this.showSearchInput!==!1&&this.search.val(this.focusser.val()),this.opts.shouldFocusInput(this)&&(this.search.focus(),c=this.search.get(0),c.createTextRange?(d=c.createTextRange(),d.collapse(!1),d.select()):c.setSelectionRange&&(e=this.search.val().length,c.setSelectionRange(e,e))),""===this.search.val()&&this.nextSearchTerm!=b&&(this.search.val(this.nextSearchTerm),this.search.select()),this.focusser.prop("disabled",!0).val(""),this.updateResults(!0),this.opts.element.trigger(a.Event("select2-open"))},close:function(){this.opened()&&(this.parent.close.apply(this,arguments),this.focusser.prop("disabled",!1),this.opts.shouldFocusInput(this)&&this.focusser.focus())},focus:function(){this.opened()?this.close():(this.focusser.prop("disabled",!1),this.opts.shouldFocusInput(this)&&this.focusser.focus())},isFocused:function(){return this.container.hasClass("select2-container-active")},cancel:function(){this.parent.cancel.apply(this,arguments),this.focusser.prop("disabled",!1),this.opts.shouldFocusInput(this)&&this.focusser.focus()},destroy:function(){a("label[for='"+this.focusser.attr("id")+"']").attr("for",this.opts.element.attr("id")),this.parent.destroy.apply(this,arguments),C.call(this,"selection","focusser")},initContainer:function(){var b,d,e=this.container,f=this.dropdown,g=I();this.showSearch(this.opts.minimumResultsForSearch<0?!1:!0),this.selection=b=e.find(".select2-choice"),this.focusser=e.find(".select2-focusser"),b.find(".select2-chosen").attr("id","select2-chosen-"+g),this.focusser.attr("aria-labelledby","select2-chosen-"+g),this.results.attr("id","select2-results-"+g),this.search.attr("aria-owns","select2-results-"+g),this.focusser.attr("id","s2id_autogen"+g),d=a("label[for='"+this.opts.element.attr("id")+"']"),this.focusser.prev().text(d.text()).attr("for",this.focusser.attr("id"));var h=this.opts.element.attr("title");this.opts.element.attr("title",h||d.text()),this.focusser.attr("tabindex",this.elementTabIndex),this.search.attr("id",this.focusser.attr("id")+"_search"),this.search.prev().text(a("label[for='"+this.focusser.attr("id")+"']").text()).attr("for",this.search.attr("id")),this.search.on("keydown",this.bind(function(a){if(this.isInterfaceEnabled()&&229!=a.keyCode){if(a.which===E.PAGE_UP||a.which===E.PAGE_DOWN)return void p(a);switch(a.which){case E.UP:case E.DOWN:return this.moveHighlight(a.which===E.UP?-1:1),void p(a);case E.ENTER:return this.selectHighlighted(),void p(a);case E.TAB:return void this.selectHighlighted({noFocus:!0});case E.ESC:return this.cancel(a),void p(a)}}})),this.search.on("blur",this.bind(function(){document.activeElement===this.body.get(0)&&window.setTimeout(this.bind(function(){this.opened()&&this.search.focus()}),0)})),this.focusser.on("keydown",this.bind(function(a){if(this.isInterfaceEnabled()&&a.which!==E.TAB&&!E.isControl(a)&&!E.isFunctionKey(a)&&a.which!==E.ESC){if(this.opts.openOnEnter===!1&&a.which===E.ENTER)return void p(a);if(a.which==E.DOWN||a.which==E.UP||a.which==E.ENTER&&this.opts.openOnEnter){if(a.altKey||a.ctrlKey||a.shiftKey||a.metaKey)return;return this.open(),void p(a)}return a.which==E.DELETE||a.which==E.BACKSPACE?(this.opts.allowClear&&this.clear(),void p(a)):void 0}})),j(this.focusser),this.focusser.on("keyup-change input",this.bind(function(a){if(this.opts.minimumResultsForSearch>=0){if(a.stopPropagation(),this.opened())return;this.open()}})),b.on("mousedown touchstart","abbr",this.bind(function(a){this.isInterfaceEnabled()&&(this.clear(),q(a),this.close(),this.selection.focus())})),b.on("mousedown touchstart",this.bind(function(d){c(b),this.container.hasClass("select2-container-active")||this.opts.element.trigger(a.Event("select2-focus")),this.opened()?this.close():this.isInterfaceEnabled()&&this.open(),p(d)})),f.on("mousedown touchstart",this.bind(function(){this.opts.shouldFocusInput(this)&&this.search.focus()})),b.on("focus",this.bind(function(a){p(a)})),this.focusser.on("focus",this.bind(function(){this.container.hasClass("select2-container-active")||this.opts.element.trigger(a.Event("select2-focus")),this.container.addClass("select2-container-active")})).on("blur",this.bind(function(){this.opened()||(this.container.removeClass("select2-container-active"),this.opts.element.trigger(a.Event("select2-blur")))})),this.search.on("focus",this.bind(function(){this.container.hasClass("select2-container-active")||this.opts.element.trigger(a.Event("select2-focus")),this.container.addClass("select2-container-active")})),this.initContainerWidth(),this.opts.element.addClass("select2-offscreen"),this.setPlaceholder()},clear:function(b){var c=this.selection.data("select2-data");if(c){var d=a.Event("select2-clearing");if(this.opts.element.trigger(d),d.isDefaultPrevented())return;var e=this.getPlaceholderOption();this.opts.element.val(e?e.val():""),this.selection.find(".select2-chosen").empty(),this.selection.removeData("select2-data"),this.setPlaceholder(),b!==!1&&(this.opts.element.trigger({type:"select2-removed",val:this.id(c),choice:c}),this.triggerChange({removed:c}))}},initSelection:function(){if(this.isPlaceholderOptionSelected())this.updateSelection(null),this.close(),this.setPlaceholder();else{var a=this;this.opts.initSelection.call(null,this.opts.element,function(c){c!==b&&null!==c&&(a.updateSelection(c),a.close(),a.setPlaceholder(),a.nextSearchTerm=a.opts.nextSearchTerm(c,a.search.val()))})}},isPlaceholderOptionSelected:function(){var a;return this.getPlaceholder()===b?!1:(a=this.getPlaceholderOption())!==b&&a.prop("selected")||""===this.opts.element.val()||this.opts.element.val()===b||null===this.opts.element.val()},prepareOpts:function(){var b=this.parent.prepareOpts.apply(this,arguments),c=this;return"select"===b.element.get(0).tagName.toLowerCase()?b.initSelection=function(a,b){var d=a.find("option").filter(function(){return this.selected&&!this.disabled});b(c.optionToData(d))}:"data"in b&&(b.initSelection=b.initSelection||function(c,d){var e=c.val(),f=null;b.query({matcher:function(a,c,d){var h=g(e,b.id(d));return h&&(f=d),h},callback:a.isFunction(d)?function(){d(f)}:a.noop})}),b},getPlaceholder:function(){return this.select&&this.getPlaceholderOption()===b?b:this.parent.getPlaceholder.apply(this,arguments)},setPlaceholder:function(){var a=this.getPlaceholder();if(this.isPlaceholderOptionSelected()&&a!==b){if(this.select&&this.getPlaceholderOption()===b)return;this.selection.find(".select2-chosen").html(this.opts.escapeMarkup(a)),this.selection.addClass("select2-default"),this.container.removeClass("select2-allowclear")}},postprocessResults:function(a,b,c){var d=0,e=this;if(this.findHighlightableChoices().each2(function(a,b){return g(e.id(b.data("select2-data")),e.opts.element.val())?(d=a,!1):void 0}),c!==!1&&this.highlight(b===!0&&d>=0?d:0),b===!0){var f=this.opts.minimumResultsForSearch;f>=0&&this.showSearch(A(a.results)>=f)}},showSearch:function(b){this.showSearchInput!==b&&(this.showSearchInput=b,this.dropdown.find(".select2-search").toggleClass("select2-search-hidden",!b),this.dropdown.find(".select2-search").toggleClass("select2-offscreen",!b),a(this.dropdown,this.container).toggleClass("select2-with-searchbox",b))},onSelect:function(a,b){if(this.triggerSelect(a)){var c=this.opts.element.val(),d=this.data();this.opts.element.val(this.id(a)),this.updateSelection(a),this.opts.element.trigger({type:"select2-selected",val:this.id(a),choice:a}),this.nextSearchTerm=this.opts.nextSearchTerm(a,this.search.val()),this.close(),b&&b.noFocus||!this.opts.shouldFocusInput(this)||this.focusser.focus(),g(c,this.id(a))||this.triggerChange({added:a,removed:d})}},updateSelection:function(a){var c,d,e=this.selection.find(".select2-chosen");this.selection.data("select2-data",a),e.empty(),null!==a&&(c=this.opts.formatSelection(a,e,this.opts.escapeMarkup)),c!==b&&e.append(c),d=this.opts.formatSelectionCssClass(a,e),d!==b&&e.addClass(d),this.selection.removeClass("select2-default"),this.opts.allowClear&&this.getPlaceholder()!==b&&this.container.addClass("select2-allowclear")},val:function(){var a,c=!1,d=null,e=this,f=this.data();if(0===arguments.length)return this.opts.element.val();if(a=arguments[0],arguments.length>1&&(c=arguments[1]),this.select)this.select.val(a).find("option").filter(function(){return this.selected}).each2(function(a,b){return d=e.optionToData(b),!1}),this.updateSelection(d),this.setPlaceholder(),c&&this.triggerChange({added:d,removed:f});else{if(!a&&0!==a)return void this.clear(c);if(this.opts.initSelection===b)throw new Error("cannot call val() if initSelection() is not defined");this.opts.element.val(a),this.opts.initSelection(this.opts.element,function(a){e.opts.element.val(a?e.id(a):""),e.updateSelection(a),e.setPlaceholder(),c&&e.triggerChange({added:a,removed:f})})}},clearSearch:function(){this.search.val(""),this.focusser.val("")},data:function(a){var c,d=!1;return 0===arguments.length?(c=this.selection.data("select2-data"),c==b&&(c=null),c):(arguments.length>1&&(d=arguments[1]),void(a?(c=this.data(),this.opts.element.val(a?this.id(a):""),this.updateSelection(a),d&&this.triggerChange({added:a,removed:c})):this.clear(d)))}}),H=D(F,{createContainer:function(){var b=a(document.createElement("div")).attr({"class":"select2-container select2-container-multi"}).html(["<ul class='select2-choices'>","  <li class='select2-search-field'>","    <label for='' class='select2-offscreen'></label>","    <input type='text' autocomplete='off' autocorrect='off' autocapitalize='off' spellcheck='false' class='select2-input'>","  </li>","</ul>","<div class='select2-drop select2-drop-multi select2-display-none'>","   <ul class='select2-results'>","   </ul>","</div>"].join(""));return b},prepareOpts:function(){var b=this.parent.prepareOpts.apply(this,arguments),c=this;return"select"===b.element.get(0).tagName.toLowerCase()?b.initSelection=function(a,b){var d=[];a.find("option").filter(function(){return this.selected&&!this.disabled}).each2(function(a,b){d.push(c.optionToData(b))}),b(d)}:"data"in b&&(b.initSelection=b.initSelection||function(c,d){var e=h(c.val(),b.separator),f=[];b.query({matcher:function(c,d,h){var i=a.grep(e,function(a){return g(a,b.id(h))}).length;return i&&f.push(h),i},callback:a.isFunction(d)?function(){for(var a=[],c=0;c<e.length;c++)for(var h=e[c],i=0;i<f.length;i++){var j=f[i];if(g(h,b.id(j))){a.push(j),f.splice(i,1);break}}d(a)}:a.noop})}),b},selectChoice:function(a){var b=this.container.find(".select2-search-choice-focus");b.length&&a&&a[0]==b[0]||(b.length&&this.opts.element.trigger("choice-deselected",b),b.removeClass("select2-search-choice-focus"),a&&a.length&&(this.close(),a.addClass("select2-search-choice-focus"),this.opts.element.trigger("choice-selected",a)))},destroy:function(){a("label[for='"+this.search.attr("id")+"']").attr("for",this.opts.element.attr("id")),this.parent.destroy.apply(this,arguments),C.call(this,"searchContainer","selection")},initContainer:function(){var b,c=".select2-choices";this.searchContainer=this.container.find(".select2-search-field"),this.selection=b=this.container.find(c);var d=this;this.selection.on("click",".select2-search-choice:not(.select2-locked)",function(){d.search[0].focus(),d.selectChoice(a(this))}),this.search.attr("id","s2id_autogen"+I()),this.search.prev().text(a("label[for='"+this.opts.element.attr("id")+"']").text()).attr("for",this.search.attr("id")),this.search.on("input paste",this.bind(function(){this.search.attr("placeholder")&&0==this.search.val().length||this.isInterfaceEnabled()&&(this.opened()||this.open())})),this.search.attr("tabindex",this.elementTabIndex),this.keydowns=0,this.search.on("keydown",this.bind(function(a){if(this.isInterfaceEnabled()){++this.keydowns;var c=b.find(".select2-search-choice-focus"),d=c.prev(".select2-search-choice:not(.select2-locked)"),e=c.next(".select2-search-choice:not(.select2-locked)"),f=o(this.search);if(c.length&&(a.which==E.LEFT||a.which==E.RIGHT||a.which==E.BACKSPACE||a.which==E.DELETE||a.which==E.ENTER)){var g=c;return a.which==E.LEFT&&d.length?g=d:a.which==E.RIGHT?g=e.length?e:null:a.which===E.BACKSPACE?this.unselect(c.first())&&(this.search.width(10),g=d.length?d:e):a.which==E.DELETE?this.unselect(c.first())&&(this.search.width(10),g=e.length?e:null):a.which==E.ENTER&&(g=null),this.selectChoice(g),p(a),void(g&&g.length||this.open())}if((a.which===E.BACKSPACE&&1==this.keydowns||a.which==E.LEFT)&&0==f.offset&&!f.length)return this.selectChoice(b.find(".select2-search-choice:not(.select2-locked)").last()),void p(a);if(this.selectChoice(null),this.opened())switch(a.which){case E.UP:case E.DOWN:return this.moveHighlight(a.which===E.UP?-1:1),void p(a);case E.ENTER:return this.selectHighlighted(),void p(a);case E.TAB:return this.selectHighlighted({noFocus:!0}),void this.close();case E.ESC:return this.cancel(a),void p(a)}if(a.which!==E.TAB&&!E.isControl(a)&&!E.isFunctionKey(a)&&a.which!==E.BACKSPACE&&a.which!==E.ESC){if(a.which===E.ENTER){if(this.opts.openOnEnter===!1)return;if(a.altKey||a.ctrlKey||a.shiftKey||a.metaKey)return}this.open(),(a.which===E.PAGE_UP||a.which===E.PAGE_DOWN)&&p(a),a.which===E.ENTER&&p(a)}}})),this.search.on("keyup",this.bind(function(){this.keydowns=0,this.resizeSearch()})),this.search.on("blur",this.bind(function(b){this.container.removeClass("select2-container-active"),this.search.removeClass("select2-focused"),this.selectChoice(null),this.opened()||this.clearSearch(),b.stopImmediatePropagation(),this.opts.element.trigger(a.Event("select2-blur"))})),this.container.on("click",c,this.bind(function(b){this.isInterfaceEnabled()&&(a(b.target).closest(".select2-search-choice").length>0||(this.selectChoice(null),this.clearPlaceholder(),this.container.hasClass("select2-container-active")||this.opts.element.trigger(a.Event("select2-focus")),this.open(),this.focusSearch(),b.preventDefault()))})),this.container.on("focus",c,this.bind(function(){this.isInterfaceEnabled()&&(this.container.hasClass("select2-container-active")||this.opts.element.trigger(a.Event("select2-focus")),this.container.addClass("select2-container-active"),this.dropdown.addClass("select2-drop-active"),this.clearPlaceholder())})),this.initContainerWidth(),this.opts.element.addClass("select2-offscreen"),this.clearSearch()},enableInterface:function(){this.parent.enableInterface.apply(this,arguments)&&this.search.prop("disabled",!this.isInterfaceEnabled())},initSelection:function(){if(""===this.opts.element.val()&&""===this.opts.element.text()&&(this.updateSelection([]),this.close(),this.clearSearch()),this.select||""!==this.opts.element.val()){var a=this;this.opts.initSelection.call(null,this.opts.element,function(c){c!==b&&null!==c&&(a.updateSelection(c),a.close(),a.clearSearch())})}},clearSearch:function(){var a=this.getPlaceholder(),c=this.getMaxSearchWidth();a!==b&&0===this.getVal().length&&this.search.hasClass("select2-focused")===!1?(this.search.val(a).addClass("select2-default"),this.search.width(c>0?c:this.container.css("width"))):this.search.val("").width(10)},clearPlaceholder:function(){this.search.hasClass("select2-default")&&this.search.val("").removeClass("select2-default")},opening:function(){this.clearPlaceholder(),this.resizeSearch(),this.parent.opening.apply(this,arguments),this.focusSearch(),""===this.search.val()&&this.nextSearchTerm!=b&&(this.search.val(this.nextSearchTerm),this.search.select()),this.updateResults(!0),this.opts.shouldFocusInput(this)&&this.search.focus(),this.opts.element.trigger(a.Event("select2-open"))},close:function(){this.opened()&&this.parent.close.apply(this,arguments)},focus:function(){this.close(),this.search.focus()},isFocused:function(){return this.search.hasClass("select2-focused")},updateSelection:function(b){var c=[],d=[],f=this;a(b).each(function(){e(f.id(this),c)<0&&(c.push(f.id(this)),d.push(this))}),b=d,this.selection.find(".select2-search-choice").remove(),a(b).each(function(){f.addSelectedChoice(this)}),f.postprocessResults()},tokenize:function(){var a=this.search.val();a=this.opts.tokenizer.call(this,a,this.data(),this.bind(this.onSelect),this.opts),null!=a&&a!=b&&(this.search.val(a),a.length>0&&this.open())},onSelect:function(a,c){this.triggerSelect(a)&&""!==a.text&&(this.addSelectedChoice(a),this.opts.element.trigger({type:"selected",val:this.id(a),choice:a}),this.nextSearchTerm=this.opts.nextSearchTerm(a,this.search.val()),this.moveHighlight(1),(this.select||!this.opts.closeOnSelect)&&this.postprocessResults(a,!1,this.opts.closeOnSelect===!0),this.opts.closeOnSelect?(this.clearSearch(),this.updateResults(),this.close(),this.search.width(10)):this.countSelectableResults()>0?(this.search.width(10),this.resizeSearch(),this.getMaximumSelectionSize()>0&&this.val().length>=this.getMaximumSelectionSize()?this.updateResults(!0):this.nextSearchTerm!=b&&(this.search.val(this.nextSearchTerm),this.updateResults(),this.search.select()),this.positionDropdown()):(this.close(),this.search.width(10)),this.triggerChange({added:a}),c&&c.noFocus||this.focusSearch())},cancel:function(){this.close(),this.focusSearch()},addSelectedChoice:function(c){var d,e,f=!c.locked,g=a("<li class='select2-search-choice'>    <div></div>    <a href='#' class='select2-search-choice-close' tabindex='-1'></a></li>"),h=a("<li class='select2-search-choice select2-locked'><div></div></li>"),i=f?g:h,j=this.id(c),k=this.getVal();d=this.opts.formatSelection(c,i.find("div"),this.opts.escapeMarkup),d!=b&&i.find("div").replaceWith("<div>"+d+"</div>"),e=this.opts.formatSelectionCssClass(c,i.find("div")),e!=b&&i.addClass(e),f&&i.find(".select2-search-choice-close").on("mousedown",p).on("click dblclick",this.bind(function(b){this.isInterfaceEnabled()&&(this.unselect(a(b.target)),this.selection.find(".select2-search-choice-focus").removeClass("select2-search-choice-focus"),p(b),this.close(),this.focusSearch())})).on("focus",this.bind(function(){this.isInterfaceEnabled()&&(this.container.addClass("select2-container-active"),this.dropdown.addClass("select2-drop-active"))})),i.data("select2-data",c),i.insertBefore(this.searchContainer),k.push(j),this.setVal(k)},unselect:function(b){var c,d,f=this.getVal();if(b=b.closest(".select2-search-choice"),0===b.length)throw"Invalid argument: "+b+". Must be .select2-search-choice";if(c=b.data("select2-data")){var g=a.Event("select2-removing");if(g.val=this.id(c),g.choice=c,this.opts.element.trigger(g),g.isDefaultPrevented())return!1;for(;(d=e(this.id(c),f))>=0;)f.splice(d,1),this.setVal(f),this.select&&this.postprocessResults();return b.remove(),this.opts.element.trigger({type:"select2-removed",val:this.id(c),choice:c}),this.triggerChange({removed:c}),!0}},postprocessResults:function(a,b,c){var d=this.getVal(),f=this.results.find(".select2-result"),g=this.results.find(".select2-result-with-children"),h=this;f.each2(function(a,b){var c=h.id(b.data("select2-data"));e(c,d)>=0&&(b.addClass("select2-selected"),b.find(".select2-result-selectable").addClass("select2-selected"))}),g.each2(function(a,b){b.is(".select2-result-selectable")||0!==b.find(".select2-result-selectable:not(.select2-selected)").length||b.addClass("select2-selected")}),-1==this.highlight()&&c!==!1&&h.highlight(0),!this.opts.createSearchChoice&&!f.filter(".select2-result:not(.select2-selected)").length>0&&(!a||a&&!a.more&&0===this.results.find(".select2-no-results").length)&&y(h.opts.formatNoMatches,"formatNoMatches")&&this.results.append("<li class='select2-no-results'>"+z(h.opts.formatNoMatches,h.opts.element,h.search.val())+"</li>")},getMaxSearchWidth:function(){return this.selection.width()-i(this.search)},resizeSearch:function(){var a,b,c,d,e,f=i(this.search);a=r(this.search)+10,b=this.search.offset().left,c=this.selection.width(),d=this.selection.offset().left,e=c-(b-d)-f,a>e&&(e=c-f),40>e&&(e=c-f),0>=e&&(e=a),this.search.width(Math.floor(e))},getVal:function(){var a;return this.select?(a=this.select.val(),null===a?[]:a):(a=this.opts.element.val(),h(a,this.opts.separator))},setVal:function(b){var c;this.select?this.select.val(b):(c=[],a(b).each(function(){e(this,c)<0&&c.push(this)}),this.opts.element.val(0===c.length?"":c.join(this.opts.separator)))},buildChangeDetails:function(a,b){for(var b=b.slice(0),a=a.slice(0),c=0;c<b.length;c++)for(var d=0;d<a.length;d++)g(this.opts.id(b[c]),this.opts.id(a[d]))&&(b.splice(c,1),c>0&&c--,a.splice(d,1),d--);return{added:b,removed:a}},val:function(c,d){var e,f=this;if(0===arguments.length)return this.getVal();if(e=this.data(),e.length||(e=[]),!c&&0!==c)return this.opts.element.val(""),this.updateSelection([]),this.clearSearch(),void(d&&this.triggerChange({added:this.data(),removed:e}));if(this.setVal(c),this.select)this.opts.initSelection(this.select,this.bind(this.updateSelection)),d&&this.triggerChange(this.buildChangeDetails(e,this.data()));else{if(this.opts.initSelection===b)throw new Error("val() cannot be called if initSelection() is not defined");this.opts.initSelection(this.opts.element,function(b){var c=a.map(b,f.id);f.setVal(c),f.updateSelection(b),f.clearSearch(),d&&f.triggerChange(f.buildChangeDetails(e,f.data()))})}this.clearSearch()},onSortStart:function(){if(this.select)throw new Error("Sorting of elements is not supported when attached to <select>. Attach to <input type='hidden'/> instead.");this.search.width(0),this.searchContainer.hide()},onSortEnd:function(){var b=[],c=this;this.searchContainer.show(),this.searchContainer.appendTo(this.searchContainer.parent()),this.resizeSearch(),this.selection.find(".select2-search-choice").each(function(){b.push(c.opts.id(a(this).data("select2-data")))}),this.setVal(b),this.triggerChange()},data:function(b,c){var d,e,f=this;return 0===arguments.length?this.selection.children(".select2-search-choice").map(function(){return a(this).data("select2-data")}).get():(e=this.data(),b||(b=[]),d=a.map(b,function(a){return f.opts.id(a)}),this.setVal(d),this.updateSelection(b),this.clearSearch(),c&&this.triggerChange(this.buildChangeDetails(e,this.data())),void 0)}}),a.fn.select2=function(){var c,d,f,g,h,i=Array.prototype.slice.call(arguments,0),j=["val","destroy","opened","open","close","focus","isFocused","container","dropdown","onSortStart","onSortEnd","enable","disable","readonly","positionDropdown","data","search"],k=["opened","isFocused","container","dropdown"],l=["val","data"],m={search:"externalSearch"};return this.each(function(){if(0===i.length||"object"==typeof i[0])c=0===i.length?{}:a.extend({},i[0]),c.element=a(this),"select"===c.element.get(0).tagName.toLowerCase()?h=c.element.prop("multiple"):(h=c.multiple||!1,"tags"in c&&(c.multiple=h=!0)),d=h?new window.Select2.class.multi:new window.Select2.class.single,d.init(c);else{if("string"!=typeof i[0])throw"Invalid arguments to select2 plugin: "+i;if(e(i[0],j)<0)throw"Unknown method: "+i[0];if(g=b,d=a(this).data("select2"),d===b)return;if(f=i[0],"container"===f?g=d.container:"dropdown"===f?g=d.dropdown:(m[f]&&(f=m[f]),g=d[f].apply(d,i.slice(1))),e(i[0],k)>=0||e(i[0],l)>=0&&1==i.length)return!1}}),g===b?this:g},a.fn.select2.defaults={width:"copy",loadMorePadding:0,closeOnSelect:!0,openOnEnter:!0,containerCss:{},dropdownCss:{},containerCssClass:"",dropdownCssClass:"",formatResult:function(a,b,c,d){var e=[];return t(a.text,c.term,e,d),e.join("")},formatSelection:function(a,c,d){return a?d(a.text):b},sortResults:function(a){return a},formatResultCssClass:function(a){return a.css},formatSelectionCssClass:function(){return b},minimumResultsForSearch:0,minimumInputLength:0,maximumInputLength:null,maximumSelectionSize:0,id:function(a){return a==b?null:a.id},matcher:function(a,b){return d(""+b).toUpperCase().indexOf(d(""+a).toUpperCase())>=0},separator:",",tokenSeparators:[],tokenizer:B,escapeMarkup:u,blurOnChange:!1,selectOnBlur:!1,adaptContainerCssClass:function(a){return a},adaptDropdownCssClass:function(){return null},nextSearchTerm:function(){return b},searchInputPlaceholder:"",createSearchChoicePosition:"top",shouldFocusInput:function(a){var b="ontouchstart"in window||navigator.msMaxTouchPoints>0;return b&&a.opts.minimumResultsForSearch<0?!1:!0}},a.fn.select2.locales=[],a.fn.select2.locales.en={formatMatches:function(a){return 1===a?"One result is available, press enter to select it.":a+" results are available, use up and down arrow keys to navigate."},formatNoMatches:function(){return"No matches found"},formatAjaxError:function(){return"Loading failed"},formatInputTooShort:function(a,b){var c=b-a.length;return"Please enter "+c+" or more character"+(1==c?"":"s")},formatInputTooLong:function(a,b){var c=a.length-b;return"Please delete "+c+" character"+(1==c?"":"s")},formatSelectionTooBig:function(a){return"You can only select "+a+" item"+(1==a?"":"s")},formatLoadMore:function(){return"Loading more results…"},formatSearching:function(){return"Searching…"}},a.extend(a.fn.select2.defaults,a.fn.select2.locales.en),a.fn.select2.ajaxDefaults={transport:a.ajax,params:{type:"GET",cache:!1,dataType:"json"}},window.Select2={query:{ajax:v,local:w,tags:x},util:{debounce:l,markMatch:t,escapeMarkup:u,stripDiacritics:d},"class":{"abstract":F,single:G,multi:H}}}}(jQuery);
 //# sourceMappingURL=../../../maps/libs/jquery/select2.js.map
\ No newline at end of file
diff --git a/static/scripts/mvc/collection/list-of-pairs-collection-creator.js b/static/scripts/mvc/collection/list-of-pairs-collection-creator.js
index 655c4fce9c2..37aa368b324 100644
--- a/static/scripts/mvc/collection/list-of-pairs-collection-creator.js
+++ b/static/scripts/mvc/collection/list-of-pairs-collection-creator.js
@@ -1,2 +1,2 @@
-define(["utils/levenshtein","utils/natural-sort","mvc/collection/list-collection-creator","mvc/base-mvc","utils/localization","ui/hoverhighlight"],function(a,b,c,d,e){function f(a){function b(){return c.length||(c=[new RegExp(this.filters[0]),new RegExp(this.filters[1])]),c}a=a||{},a.createPair=a.createPair||function(a){return this.debug("creating pair:",a.listA[a.indexA].name,a.listB[a.indexB].name),a=a||{},this._pair(a.listA.splice(a.indexA,1)[0],a.listB.splice(a.indexB,1)[0],{silent:!0})};var c=[];return a.preprocessMatch=a.preprocessMatch||function(a){var c=b.call(this);return _.extend(a,{matchTo:a.matchTo.name.replace(c[0],""),possible:a.possible.name.replace(c[1],"")})},function(b){this.debug("autopair _strategy ---------------------------"),b=b||{};var c,d=b.listA,e=b.listB,f=0,g={score:0,index:null},h=[];for(this.debug("starting list lens:",d.length,e.length),this.debug("bestMatch (starting):",JSON.stringify(g,null,"  "));f<d.length;){var i=d[f];for(g.score=0,c=0;c<e.length;c++){var j=e[c];if(this.debug(f+":"+i.name),this.debug(c+":"+j.name),d[f]!==e[c]&&(g=a.match.call(this,a.preprocessMatch.call(this,{matchTo:i,possible:j,index:c,bestMatch:g})),this.debug("bestMatch:",JSON.stringify(g,null,"  ")),1===g.score)){this.debug("breaking early due to perfect match");break}}var k=a.scoreThreshold.call(this);if(this.debug("scoreThreshold:",k),this.debug("bestMatch.score:",g.score),g.score>=k?(this.debug("creating pair"),h.push(a.createPair.call(this,{listA:d,indexA:f,listB:e,indexB:g.index})),this.debug("list lens now:",d.length,e.length)):f+=1,!d.length||!e.length)return h}return this.debug("paired:",JSON.stringify(h,null,"  ")),this.debug("autopair _strategy ---------------------------"),h}}function g(a){var b=a.toJSON();return k(b,{historyId:a.historyId})}var h="collections",i=Backbone.View.extend(d.LoggableMixin).extend({_logNamespace:h,tagName:"li",className:"dataset paired",initialize:function(a){this.pair=a.pair||{}},template:_.template(['<span class="forward-dataset-name flex-column"><%= pair.forward.name %></span>','<span class="pair-name-column flex-column">','<span class="pair-name"><%= pair.name %></span>',"</span>",'<span class="reverse-dataset-name flex-column"><%= pair.reverse.name %></span>'].join("")),render:function(){return this.$el.attr("draggable",!0).data("pair",this.pair).html(this.template({pair:this.pair})).addClass("flex-column-container"),this},events:{dragstart:"_dragstart",dragend:"_dragend",dragover:"_sendToParent",drop:"_sendToParent"},_dragstart:function(a){a.currentTarget.style.opacity="0.4",a.originalEvent&&(a=a.originalEvent),a.dataTransfer.effectAllowed="move",a.dataTransfer.setData("text/plain",JSON.stringify(this.pair)),this.$el.parent().trigger("pair.dragstart",[this])},_dragend:function(a){a.currentTarget.style.opacity="1.0",this.$el.parent().trigger("pair.dragend",[this])},_sendToParent:function(a){this.$el.parent().trigger(a)},toString:function(){return"PairView("+this.pair.name+")"}}),j=Backbone.View.extend(d.LoggableMixin).extend({_logNamespace:h,className:"list-of-pairs-collection-creator collection-creator flex-row-container",initialize:function(a){this.metric("PairedCollectionCreator.initialize",a),a=_.defaults(a,{datasets:[],filters:this.DEFAULT_FILTERS,automaticallyPair:!0,strategy:"lcs",matchPercentage:.9,twoPassAutopairing:!0}),this.initialList=a.datasets,this.historyId=a.historyId,this.filters=this.commonFilters[a.filters]||this.commonFilters[this.DEFAULT_FILTERS],_.isArray(a.filters)&&(this.filters=a.filters),this.automaticallyPair=a.automaticallyPair,this.strategy=this.strategies[a.strategy]||this.strategies[this.DEFAULT_STRATEGY],_.isFunction(a.strategy)&&(this.strategy=a.strategy),this.matchPercentage=a.matchPercentage,this.twoPassAutopairing=a.twoPassAutopairing,this.removeExtensions=!0,this.oncancel=a.oncancel,this.oncreate=a.oncreate,this.autoscrollDist=a.autoscrollDist||24,this.unpairedPanelHidden=!1,this.pairedPanelHidden=!1,this.$dragging=null,this.blocking=!1,this._setUpBehaviors(),this._dataSetUp()},commonFilters:{illumina:["_1","_2"],Rs:["_R1","_R2"]},DEFAULT_FILTERS:"illumina",strategies:{simple:"autopairSimple",lcs:"autopairLCS",levenshtein:"autopairLevenshtein"},DEFAULT_STRATEGY:"lcs",_dataSetUp:function(){this.paired=[],this.unpaired=[],this.selectedIds=[],this._sortInitialList(),this._ensureIds(),this.unpaired=this.initialList.slice(0),this.automaticallyPair&&(this.autoPair(),this.once("rendered:initial",function(){this.trigger("autopair")}))},_sortInitialList:function(){this._sortDatasetList(this.initialList)},_sortDatasetList:function(a){return a.sort(function(a,c){return b(a.name,c.name)}),a},_ensureIds:function(){return this.initialList.forEach(function(a){a.hasOwnProperty("id")||(a.id=_.uniqueId())}),this.initialList},_splitByFilters:function(){function a(a,b){return b.test(a.name)}var b=this.filters.map(function(a){return new RegExp(a)}),c=[[],[]];return this.unpaired.forEach(function(d){b.forEach(function(b,e){a(d,b)&&c[e].push(d)})}),c},_addToUnpaired:function(a){var c=function(d,e){if(d===e)return d;var f=Math.floor((e-d)/2)+d,g=b(a.name,this.unpaired[f].name);if(0>g)return c(d,f);if(g>0)return c(f+1,e);for(;this.unpaired[f]&&this.unpaired[f].name===a.name;)f++;return f}.bind(this);this.unpaired.splice(c(0,this.unpaired.length),0,a)},autoPair:function(a){var b=this._splitByFilters(),c=[];return 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c="",d="",e=0,f=0;e<a.length&&e<b.length&&a[e]===b[e];)c+=a[e],e+=1;if(e===a.length)return a;if(e===b.length)return b;for(e=a.length-1,f=b.length-1;e>=0&&f>=0&&a[e]===b[f];)d=[a[e],d].join(""),e-=1,f-=1;return c+d},_pair:function(a,b,c){c=c||{};var d=this._createPair(a,b,c.name);return this.paired.push(d),this.unpaired=_.without(this.unpaired,a,b),c.silent||this.trigger("pair:new",d),d},_createPair:function(a,b,c){if(!a||!b||a===b)throw new Error("Bad pairing: "+[JSON.stringify(a),JSON.stringify(b)]);return c=c||this._guessNameForPair(a,b),{forward:a,name:c,reverse:b}},_guessNameForPair:function(a,b,c){c=void 0!==c?c:this.removeExtensions;var d=a.name,e=b.name,f=this._naiveStartingAndEndingLCS(d.replace(this.filters[0],""),e.replace(this.filters[1],""));if(c){var g=f.lastIndexOf(".");if(g>0){var h=f.slice(g,f.length);f=f.replace(h,""),d=d.replace(h,""),e=e.replace(h,"")}}return f||d+" & "+e},_unpair:function(a,b){if(b=b||{},!a)throw new Error("Bad pair: "+JSON.stringify(a));return 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pull-right" ','placeholder="',e("Enter a name for your new list"),'" />','<div class="collection-name-prompt pull-right">',e("Name"),":</div>","</div>","</div>",'<div class="actions clear vertically-spaced">','<div class="other-options pull-left">','<button class="cancel-create btn" tabindex="-1">',e("Cancel"),"</button>",'<div class="create-other btn-group dropup">','<button class="btn btn-default dropdown-toggle" data-toggle="dropdown">',e("Create a different kind of collection"),' <span class="caret"></span>',"</button>",'<ul class="dropdown-menu" role="menu">','<li><a href="#">',e("Create a <i>single</i> pair"),"</a></li>",'<li><a href="#">',e("Create a list of <i>unpaired</i> datasets"),"</a></li>","</ul>","</div>","</div>",'<div class="main-options pull-right">','<button class="create-collection btn btn-primary">',e("Create list"),"</button>","</div>","</div>"].join("")),helpContent:_.template(["<p>",e(["Collections of paired datasets are ordered lists of dataset pairs (often forward and reverse reads). ","These collections can be passed to tools and workflows in order to have analyses done on each member of ","the entire group. This interface allows you to create a collection, choose which datasets are paired, ","and re-order the final collection."].join("")),"</p>","<p>",e(['Unpaired datasets are shown in the <i data-target=".unpaired-columns">unpaired section</i> ',"(hover over the underlined words to highlight below). ",'Paired datasets are shown in the <i data-target=".paired-columns">paired section</i>.',"<ul>To pair datasets, you can:","<li>Click a dataset in the ",'<i data-target=".unpaired-columns .forward-column .column-datasets,','.unpaired-columns .forward-column">forward column</i> ',"to select it then click a dataset in the ",'<i data-target=".unpaired-columns .reverse-column .column-datasets,','.unpaired-columns .reverse-column">reverse column</i>.',"</li>",'<li>Click one of the "Pair these datasets" buttons in the ','<i data-target=".unpaired-columns .paired-column .column-datasets,','.unpaired-columns .paired-column">middle column</i> ',"to pair the datasets in a particular row.","</li>",'<li>Click <i data-target=".autopair-link">"Auto-pair"</i> ',"to have your datasets automatically paired based on name.","</li>","</ul>"].join("")),"</p>","<p>",e(["<ul>You can filter what is shown in the unpaired sections by:","<li>Entering partial dataset names in either the ",'<i data-target=".forward-unpaired-filter input">forward filter</i> or ','<i data-target=".reverse-unpaired-filter input">reverse filter</i>.',"</li>","<li>Choosing from a list of preset filters by clicking the ",'<i data-target=".choose-filters-link">"Choose filters" link</i>.',"</li>","<li>Entering regular expressions to match dataset names. See: ",'<a href="https://developer.mozilla.org/en-US/docs/Web/JavaScript/Guide/Regular_Expressions"',' target="_blank">MDN\'s JavaScript Regular Expression Tutorial</a>. ',"Note: forward slashes (\\) are not needed.","</li>","<li>Clearing the filters by clicking the ",'<i data-target=".clear-filters-link">"Clear filters" link</i>.',"</li>","</ul>"].join("")),"</p>","<p>",e(["To unpair individual dataset pairs, click the ",'<i data-target=".unpair-btn">unpair buttons ( <span class="fa fa-unlink"></span> )</i>. ','Click the <i data-target=".unpair-all-link">"Unpair all" link</i> to unpair all pairs.'].join("")),"</p>","<p>",e(['You can include or remove the file extensions (e.g. ".fastq") from your pair names by toggling the ','<i data-target=".remove-extensions-prompt">"Remove file extensions from pair names?"</i> control.'].join("")),"</p>","<p>",e(['Once your collection is complete, enter a <i data-target=".collection-name">name</i> and ','click <i data-target=".create-collection">"Create list"</i>. ',"(Note: you do not have to pair all unpaired datasets to finish.)"].join("")),"</p>"].join(""))};var k=function(a,b){var c,d=jQuery.Deferred();if(b=_.defaults(b||{},{datasets:a,oncancel:function(){Galaxy.modal.hide(),d.reject("cancelled")},oncreate:function(a,b){Galaxy.modal.hide(),d.resolve(b)}}),!window.Galaxy||!Galaxy.modal)throw new Error("Galaxy or Galaxy.modal not found");return c=new j(b),Galaxy.modal.show({title:"Create a collection of paired datasets",body:c.$el,width:"80%",height:"800px",closing_events:!0}),c.render(),window.creator=c,d};return{PairedCollectionCreator:j,pairedCollectionCreatorModal:k,createListOfPairsCollection:g}});
+define(["utils/levenshtein","utils/natural-sort","mvc/collection/list-collection-creator","mvc/base-mvc","utils/localization","ui/hoverhighlight"],function(a,b,c,d,e){function f(a){function b(){return c.length||(c=[new RegExp(this.filters[0]),new RegExp(this.filters[1])]),c}a=a||{},a.createPair=a.createPair||function(a){return this.debug("creating pair:",a.listA[a.indexA].name,a.listB[a.indexB].name),a=a||{},this._pair(a.listA.splice(a.indexA,1)[0],a.listB.splice(a.indexB,1)[0],{silent:!0})};var c=[];return a.preprocessMatch=a.preprocessMatch||function(a){var c=b.call(this);return _.extend(a,{matchTo:a.matchTo.name.replace(c[0],""),possible:a.possible.name.replace(c[1],"")})},function(b){this.debug("autopair _strategy ---------------------------"),b=b||{};var c,d=b.listA,e=b.listB,f=0,g={score:0,index:null},h=[];for(this.debug("starting list lens:",d.length,e.length),this.debug("bestMatch (starting):",JSON.stringify(g,null,"  "));f<d.length;){var i=d[f];for(g.score=0,c=0;c<e.length;c++){var j=e[c];if(this.debug(f+":"+i.name),this.debug(c+":"+j.name),d[f]!==e[c]&&(g=a.match.call(this,a.preprocessMatch.call(this,{matchTo:i,possible:j,index:c,bestMatch:g})),this.debug("bestMatch:",JSON.stringify(g,null,"  ")),1===g.score)){this.debug("breaking early due to perfect match");break}}var k=a.scoreThreshold.call(this);if(this.debug("scoreThreshold:",k),this.debug("bestMatch.score:",g.score),g.score>=k?(this.debug("creating pair"),h.push(a.createPair.call(this,{listA:d,indexA:f,listB:e,indexB:g.index})),this.debug("list lens now:",d.length,e.length)):f+=1,!d.length||!e.length)return h}return this.debug("paired:",JSON.stringify(h,null,"  ")),this.debug("autopair _strategy ---------------------------"),h}}function g(a){var b=a.toJSON();return k(b,{historyId:a.historyId})}var h="collections",i=Backbone.View.extend(d.LoggableMixin).extend({_logNamespace:h,tagName:"li",className:"dataset paired",initialize:function(a){this.pair=a.pair||{}},template:_.template(['<span class="forward-dataset-name flex-column"><%= pair.forward.name %></span>','<span class="pair-name-column flex-column">','<span class="pair-name"><%= pair.name %></span>',"</span>",'<span class="reverse-dataset-name flex-column"><%= pair.reverse.name %></span>'].join("")),render:function(){return this.$el.attr("draggable",!0).data("pair",this.pair).html(this.template({pair:this.pair})).addClass("flex-column-container"),this},events:{dragstart:"_dragstart",dragend:"_dragend",dragover:"_sendToParent",drop:"_sendToParent"},_dragstart:function(a){a.currentTarget.style.opacity="0.4",a.originalEvent&&(a=a.originalEvent),a.dataTransfer.effectAllowed="move",a.dataTransfer.setData("text/plain",JSON.stringify(this.pair)),this.$el.parent().trigger("pair.dragstart",[this])},_dragend:function(a){a.currentTarget.style.opacity="1.0",this.$el.parent().trigger("pair.dragend",[this])},_sendToParent:function(a){this.$el.parent().trigger(a)},toString:function(){return"PairView("+this.pair.name+")"}}),j=Backbone.View.extend(d.LoggableMixin).extend({_logNamespace:h,className:"list-of-pairs-collection-creator collection-creator flex-row-container",initialize:function(a){this.metric("PairedCollectionCreator.initialize",a),a=_.defaults(a,{datasets:[],filters:this.DEFAULT_FILTERS,automaticallyPair:!0,strategy:"lcs",matchPercentage:.9,twoPassAutopairing:!0}),this.initialList=a.datasets,this.historyId=a.historyId,this.filters=this.commonFilters[a.filters]||this.commonFilters[this.DEFAULT_FILTERS],_.isArray(a.filters)&&(this.filters=a.filters),this.automaticallyPair=a.automaticallyPair,this.strategy=this.strategies[a.strategy]||this.strategies[this.DEFAULT_STRATEGY],_.isFunction(a.strategy)&&(this.strategy=a.strategy),this.matchPercentage=a.matchPercentage,this.twoPassAutopairing=a.twoPassAutopairing,this.removeExtensions=!0,this.oncancel=a.oncancel,this.oncreate=a.oncreate,this.autoscrollDist=a.autoscrollDist||24,this.unpairedPanelHidden=!1,this.pairedPanelHidden=!1,this.$dragging=null,this.blocking=!1,this._setUpBehaviors(),this._dataSetUp()},commonFilters:{illumina:["_1","_2"],Rs:["_R1","_R2"]},DEFAULT_FILTERS:"illumina",strategies:{simple:"autopairSimple",lcs:"autopairLCS",levenshtein:"autopairLevenshtein"},DEFAULT_STRATEGY:"lcs",_dataSetUp:function(){this.paired=[],this.unpaired=[],this.selectedIds=[],this._sortInitialList(),this._ensureIds(),this.unpaired=this.initialList.slice(0),this.automaticallyPair&&(this.autoPair(),this.once("rendered:initial",function(){this.trigger("autopair")}))},_sortInitialList:function(){this._sortDatasetList(this.initialList)},_sortDatasetList:function(a){return a.sort(function(a,c){return b(a.name,c.name)}),a},_ensureIds:function(){return this.initialList.forEach(function(a){a.hasOwnProperty("id")||(a.id=_.uniqueId())}),this.initialList},_splitByFilters:function(){function a(a,b){return b.test(a.name)}var b=this.filters.map(function(a){return new RegExp(a)}),c=[[],[]];return this.unpaired.forEach(function(d){b.forEach(function(b,e){a(d,b)&&c[e].push(d)})}),c},_addToUnpaired:function(a){var c=function(d,e){if(d===e)return d;var f=Math.floor((e-d)/2)+d,g=b(a.name,this.unpaired[f].name);if(0>g)return c(d,f);if(g>0)return c(f+1,e);for(;this.unpaired[f]&&this.unpaired[f].name===a.name;)f++;return f}.bind(this);this.unpaired.splice(c(0,this.unpaired.length),0,a)},autoPair:function(a){var b=this._splitByFilters(),c=[];return this.twoPassAutopairing&&(c=this.autopairSimple({listA:b[0],listB:b[1]}),b=this._splitByFilters()),a=a||this.strategy,b=this._splitByFilters(),c=c.concat(this[a].call(this,{listA:b[0],listB:b[1]}))},autopairSimple:f({scoreThreshold:function(){return 1},match:function(a){return a=a||{},a.matchTo===a.possible?{index:a.index,score:1}:a.bestMatch}}),autopairLevenshtein:f({scoreThreshold:function(){return this.matchPercentage},match:function(b){b=b||{};var c=a(b.matchTo,b.possible),d=1-c/Math.max(b.matchTo.length,b.possible.length);return d>b.bestMatch.score?{index:b.index,score:d}:b.bestMatch}}),autopairLCS:f({scoreThreshold:function(){return this.matchPercentage},match:function(a){a=a||{};var b=this._naiveStartingAndEndingLCS(a.matchTo,a.possible).length,c=b/Math.max(a.matchTo.length,a.possible.length);return c>a.bestMatch.score?{index:a.index,score:c}:a.bestMatch}}),_naiveStartingAndEndingLCS:function(a,b){for(var c="",d="",e=0,f=0;e<a.length&&e<b.length&&a[e]===b[e];)c+=a[e],e+=1;if(e===a.length)return a;if(e===b.length)return b;for(e=a.length-1,f=b.length-1;e>=0&&f>=0&&a[e]===b[f];)d=[a[e],d].join(""),e-=1,f-=1;return c+d},_pair:function(a,b,c){c=c||{};var d=this._createPair(a,b,c.name);return this.paired.push(d),this.unpaired=_.without(this.unpaired,a,b),c.silent||this.trigger("pair:new",d),d},_createPair:function(a,b,c){if(!a||!b||a===b)throw new Error("Bad pairing: "+[JSON.stringify(a),JSON.stringify(b)]);return c=c||this._guessNameForPair(a,b),{forward:a,name:c,reverse:b}},_guessNameForPair:function(a,b,c){c=void 0!==c?c:this.removeExtensions;var d=a.name,e=b.name,f=this._naiveStartingAndEndingLCS(d.replace(new RegExp(this.filters[0]),""),e.replace(new RegExp(this.filters[1]),""));if(c){var g=f.lastIndexOf(".");if(g>0){var h=f.slice(g,f.length);f=f.replace(h,""),d=d.replace(h,""),e=e.replace(h,"")}}return f||d+" & "+e},_unpair:function(a,b){if(b=b||{},!a)throw new Error("Bad pair: "+JSON.stringify(a));return this.paired=_.without(this.paired,a),this._addToUnpaired(a.forward),this._addToUnpaired(a.reverse),b.silent||this.trigger("pair:unpair",[a]),a},unpairAll:function(){for(var a=[];this.paired.length;)a.push(this._unpair(this.paired[0],{silent:!0}));this.trigger("pair:unpair",a)},_pairToJSON:function(a,b){return b=b||"hda",{collection_type:"paired",src:"new_collection",name:a.name,element_identifiers:[{name:"forward",id:a.forward.id,src:b},{name:"reverse",id:a.reverse.id,src:b}]}},createList:function(a){var b=this,c=window.Galaxy&&Galaxy.options.root?Galaxy.options.root:"/",d=c+"api/histories/"+this.historyId+"/contents/dataset_collections",e={type:"dataset_collection",collection_type:"list:paired",name:_.escape(a||b.$(".collection-name").val()),element_identifiers:b.paired.map(function(a){return b._pairToJSON(a)})};return b.blocking=!0,jQuery.ajax(d,{type:"POST",contentType:"application/json",dataType:"json",data:JSON.stringify(e)}).always(function(){b.blocking=!1}).fail(function(a,c,d){b._ajaxErrHandler(a,c,d)}).done(function(a,c,d){b.trigger("collection:created",a,c,d),b.metric("collection:created",a),"function"==typeof b.oncreate&&b.oncreate.call(this,a,c,d)})},_ajaxErrHandler:function(a,b,c){this.error(a,b,c);var d=e("An error occurred while creating this collection");a&&(d+=0===a.readyState&&0===a.status?": "+e("Galaxy could not be reached and may be updating.")+e(" Try again in a few minutes."):a.responseJSON?"<br /><pre>"+JSON.stringify(a.responseJSON)+"</pre>":": "+c),creator._showAlert(d,"alert-danger")},render:function(a){return this.$el.empty().html(j.templates.main()),this._renderHeader(a),this._renderMiddle(a),this._renderFooter(a),this._addPluginComponents(),this.trigger("rendered",this),this},_renderHeader:function(){var a=this.$(".header").empty().html(j.templates.header()).find(".help-content").prepend($(j.templates.helpContent()));return this._renderFilters(),a},_renderFilters:function(){return this.$(".forward-column .column-header input").val(this.filters[0]).add(this.$(".reverse-column .column-header input").val(this.filters[1]))},_renderMiddle:function(){var a=this.$(".middle").empty().html(j.templates.middle());return this.unpairedPanelHidden?this.$(".unpaired-columns").hide():this.pairedPanelHidden&&this.$(".paired-columns").hide(),this._renderUnpaired(),this._renderPaired(),a},_renderUnpaired:function(){var a,b,c=this,d=[],f=this._splitByFilters();return this.$(".forward-column .title").text([f[0].length,e("unpaired forward")].join(" ")),this.$(".forward-column .unpaired-info").text(this._renderUnpairedDisplayStr(this.unpaired.length-f[0].length)),this.$(".reverse-column .title").text([f[1].length,e("unpaired reverse")].join(" ")),this.$(".reverse-column .unpaired-info").text(this._renderUnpairedDisplayStr(this.unpaired.length-f[1].length)),this.$(".unpaired-columns .column-datasets").empty(),this.$(".autopair-link").toggle(0!==this.unpaired.length),0===this.unpaired.length?void this._renderUnpairedEmpty():(b=f[1].map(function(a,b){return void 0!==f[0][b]&&f[0][b]!==a&&d.push(c._renderPairButton()),c._renderUnpairedDataset(a)}),a=f[0].map(function(a){return c._renderUnpairedDataset(a)}),a.length||b.length?(this.$(".unpaired-columns .forward-column .column-datasets").append(a).add(this.$(".unpaired-columns .paired-column .column-datasets").append(d)).add(this.$(".unpaired-columns .reverse-column .column-datasets").append(b)),void this._adjUnpairedOnScrollbar()):void this._renderUnpairedNotShown())},_renderUnpairedDisplayStr:function(a){return["(",a," ",e("filtered out"),")"].join("")},_renderUnpairedDataset:function(a){return $("<li/>").attr("id","dataset-"+a.id).addClass("dataset unpaired").attr("draggable",!0).addClass(a.selected?"selected":"").append($("<span/>").addClass("dataset-name").text(a.name)).data("dataset",a)},_renderPairButton:function(){return $("<li/>").addClass("dataset unpaired").append($("<span/>").addClass("dataset-name").text(e("Pair these datasets")))},_renderUnpairedEmpty:function(){var a=$('<div class="empty-message"></div>').text("("+e("no remaining unpaired datasets")+")");return this.$(".unpaired-columns .paired-column .column-datasets").empty().prepend(a),a},_renderUnpairedNotShown:function(){var a=$('<div class="empty-message"></div>').text("("+e("no datasets were found matching the current filters")+")");return this.$(".unpaired-columns .paired-column .column-datasets").empty().prepend(a),a},_adjUnpairedOnScrollbar:function(){var a=this.$(".unpaired-columns").last(),b=this.$(".unpaired-columns .reverse-column .dataset").first();if(b.size()){var c=a.offset().left+a.outerWidth(),d=b.offset().left+b.outerWidth(),e=Math.floor(c)-Math.floor(d);this.$(".unpaired-columns .forward-column").css("margin-left",e>0?e:0)}},_renderPaired:function(){if(this.$(".paired-column-title .title").text([this.paired.length,e("paired")].join(" ")),this.$(".unpair-all-link").toggle(0!==this.paired.length),0===this.paired.length)return void this._renderPairedEmpty();this.$(".remove-extensions-link").show(),this.$(".paired-columns .column-datasets").empty();var a=this;this.paired.forEach(function(b){var c=new i({pair:b});a.$(".paired-columns .column-datasets").append(c.render().$el).append(['<button class="unpair-btn">','<span class="fa fa-unlink" title="',e("Unpair"),'"></span>',"</button>"].join(""))})},_renderPairedEmpty:function(){var a=$('<div class="empty-message"></div>').text("("+e("no paired datasets yet")+")");return this.$(".paired-columns .column-datasets").empty().prepend(a),a},_renderFooter:function(){var a=this.$(".footer").empty().html(j.templates.footer());return this.$(".remove-extensions").prop("checked",this.removeExtensions),"function"==typeof this.oncancel&&this.$(".cancel-create.btn").show(),a},_addPluginComponents:function(){this._chooseFiltersPopover(".choose-filters-link"),this.$(".help-content i").hoverhighlight(".collection-creator","rgba( 64, 255, 255, 1.0 )")},_chooseFiltersPopover:function(a){function b(a,b){return['<button class="filter-choice btn" ','data-forward="',a,'" data-reverse="',b,'">',e("Forward"),": ",a,", ",e("Reverse"),": ",b,"</button>"].join("")}var c=$(_.template(['<div class="choose-filters">','<div class="help">',e("Choose from the following filters to change which unpaired reads are shown in the display"),":</div>",_.values(this.commonFilters).map(function(a){return b(a[0],a[1])}).join(""),"</div>"].join(""))({}));return this.$(a).popover({container:".collection-creator",placement:"bottom",html:!0,content:c})},_validationWarning:function(a,b){var c="validation-warning";"name"===a&&(a=this.$(".collection-name").add(this.$(".collection-name-prompt")),this.$(".collection-name").focus().select()),b?(a=a||this.$("."+c),a.removeClass(c)):a.addClass(c)},_setUpBehaviors:function(){return this.once("rendered",function(){this.trigger("rendered:initial",this)}),this.on("pair:new",function(){this._renderUnpaired(),this._renderPaired(),this.$(".paired-columns").scrollTop(8e6)}),this.on("pair:unpair",function(){this._renderUnpaired(),this._renderPaired(),this.splitView()}),this.on("filter-change",function(){this.filters=[this.$(".forward-unpaired-filter input").val(),this.$(".reverse-unpaired-filter input").val()],this.metric("filter-change",this.filters),this._renderFilters(),this._renderUnpaired()}),this.on("autopair",function(){this._renderUnpaired(),this._renderPaired();var a,b=null;this.paired.length?(b="alert-success",a=this.paired.length+" "+e("pairs created"),this.unpaired.length||(a+=": "+e("all datasets have been successfully 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.dataset.unpaired":"_clickUnpairedDataset","click .reverse-column .dataset.unpaired":"_clickUnpairedDataset","click .paired-column .dataset.unpaired":"_clickPairRow","click .unpaired-columns":"clearSelectedUnpaired","mousedown .unpaired-columns .dataset":"_mousedownUnpaired","click .paired-column-title":"_clickShowOnlyPaired","mousedown .flexible-partition-drag":"_startPartitionDrag","click .paired-columns .dataset.paired":"selectPair","click .paired-columns":"clearSelectedPaired","click .paired-columns .pair-name":"_clickPairName","click .unpair-btn":"_clickUnpair","dragover .paired-columns .column-datasets":"_dragoverPairedColumns","drop .paired-columns .column-datasets":"_dropPairedColumns","pair.dragstart .paired-columns .column-datasets":"_pairDragstart","pair.dragend   .paired-columns .column-datasets":"_pairDragend","change .remove-extensions":function(){this.toggleExtensions()},"change .collection-name":"_changeName","keydown .collection-name":"_nameCheckForEnter","click .cancel-create":function(){"function"==typeof this.oncancel&&this.oncancel.call(this)},"click .create-collection":"_clickCreate"},_clickMoreHelp:function(){this.$(".main-help").addClass("expanded"),this.$(".more-help").hide()},_clickLessHelp:function(){this.$(".main-help").removeClass("expanded"),this.$(".more-help").show()},_showAlert:function(a,b){b=b||"alert-danger",this.$(".main-help").hide(),this.$(".header .alert").attr("class","alert alert-dismissable").addClass(b).show().find(".alert-message").html(a)},_hideAlert:function(){this.$(".main-help").show(),this.$(".header .alert").hide()},_clickShowOnlyUnpaired:function(){this.$(".paired-columns").is(":visible")?this.hidePaired():this.splitView()},_clickShowOnlyPaired:function(){this.$(".unpaired-columns").is(":visible")?this.hideUnpaired():this.splitView()},hideUnpaired:function(a,b){this.unpairedPanelHidden=!0,this.pairedPanelHidden=!1,this._renderMiddle(a,b)},hidePaired:function(a,b){this.unpairedPanelHidden=!1,this.pairedPanelHidden=!0,this._renderMiddle(a,b)},splitView:function(a,b){return this.unpairedPanelHidden=this.pairedPanelHidden=!1,this._renderMiddle(a,b),this},_clickUnpairAll:function(){this.metric("unpairAll"),this.unpairAll()},_clickAutopair:function(){var a=this.autoPair();this.metric("autopair",a.length,this.unpaired.length),this.trigger("autopair")},_clickFilterChoice:function(a){var b=$(a.currentTarget);this.$(".forward-unpaired-filter input").val(b.data("forward")),this.$(".reverse-unpaired-filter input").val(b.data("reverse")),this._hideChooseFilters(),this.trigger("filter-change")},_hideChooseFilters:function(){this.$(".choose-filters-link").popover("hide"),this.$(".popover").css("display","none")},_clearFilters:function(){this.$(".forward-unpaired-filter input").val(""),this.$(".reverse-unpaired-filter input").val(""),this.trigger("filter-change")},_clickUnpairedDataset:function(a){return a.stopPropagation(),this.toggleSelectUnpaired($(a.currentTarget))},toggleSelectUnpaired:function(a,b){b=b||{};var c=a.data("dataset"),d=void 0!==b.force?b.force:!a.hasClass("selected");return a.size()&&void 0!==c?(d?(a.addClass("selected"),b.waitToPair||this.pairAllSelected()):a.removeClass("selected"),a):a},pairAllSelected:function(a){a=a||{};var b=this,c=[],d=[],e=[];return b.$(".unpaired-columns .forward-column .dataset.selected").each(function(){c.push($(this).data("dataset"))}),b.$(".unpaired-columns .reverse-column .dataset.selected").each(function(){d.push($(this).data("dataset"))}),c.length=d.length=Math.min(c.length,d.length),c.forEach(function(a,c){try{e.push(b._pair(a,d[c],{silent:!0}))}catch(f){b.error(f)}}),e.length&&!a.silent&&this.trigger("pair:new",e),e},clearSelectedUnpaired:function(){this.$(".unpaired-columns .dataset.selected").removeClass("selected")},_mousedownUnpaired:function(a){if(a.shiftKey){var b=this,c=$(a.target).addClass("selected"),d=function(a){b.$(a.target).filter(".dataset").addClass("selected")};c.parent().on("mousemove",d),$(document).one("mouseup",function(){c.parent().off("mousemove",d),b.pairAllSelected()})}},_clickPairRow:function(a){var b=$(a.currentTarget).index(),c=$(".unpaired-columns .forward-column .dataset").eq(b).data("dataset"),d=$(".unpaired-columns .reverse-column .dataset").eq(b).data("dataset");this._pair(c,d)},_startPartitionDrag:function(a){function b(){d.$(".flexible-partition-drag").css("color",""),$("body").css("cursor","").unbind("mousemove",c)}function c(a){var b=a.pageY-e;d.adjPartition(b)||$("body").trigger("mouseup"),d._adjUnpairedOnScrollbar(),e+=b}var d=this,e=a.pageY;$("body").css("cursor","ns-resize"),d.$(".flexible-partition-drag").css("color","black"),$("body").mousemove(c),$("body").one("mouseup",b)},adjPartition:function(a){var b=this.$(".unpaired-columns"),c=this.$(".paired-columns"),d=parseInt(b.css("height"),10),e=parseInt(c.css("height"),10);d=Math.max(10,d+a),e-=a;var f=0>a;if(f){if(this.unpairedPanelHidden)return!1;if(10>=d)return this.hideUnpaired(),!1}else this.unpairedPanelHidden&&(b.show(),this.unpairedPanelHidden=!1);if(f)this.pairedPanelHidden&&(c.show(),this.pairedPanelHidden=!1);else{if(this.pairedPanelHidden)return!1;if(15>=e)return this.hidePaired(),!1}return b.css({height:d+"px",flex:"0 0 auto"}),!0},selectPair:function(a){a.stopPropagation(),$(a.currentTarget).toggleClass("selected")},clearSelectedPaired:function(){this.$(".paired-columns .dataset.selected").removeClass("selected")},_clickPairName:function(a){a.stopPropagation();var b=$(a.currentTarget),c=b.parent().parent(),d=c.index(".dataset.paired"),e=this.paired[d],f=prompt("Enter a new name for the pair:",e.name);f&&(e.name=f,e.customizedName=!0,b.text(e.name))},_clickUnpair:function(a){var b=Math.floor($(a.currentTarget).index(".unpair-btn"));this._unpair(this.paired[b])},_dragoverPairedColumns:function(a){a.preventDefault();var b=this.$(".paired-columns .column-datasets");this._checkForAutoscroll(b,a.originalEvent.clientY);var c=this._getNearestPairedDatasetLi(a.originalEvent.clientY);$(".element-drop-placeholder").remove();var d=$('<div class="element-drop-placeholder"></div>');c.size()?c.before(d):b.append(d)},_checkForAutoscroll:function(a,b){var c=2,d=a.offset(),e=a.scrollTop(),f=b-d.top,g=d.top+a.outerHeight()-b;f>=0&&f<this.autoscrollDist?a.scrollTop(e-c):g>=0&&g<this.autoscrollDist&&a.scrollTop(e+c)},_getNearestPairedDatasetLi:function(a){for(var b=4,c=this.$(".paired-columns .column-datasets li").toArray(),d=0;d<c.length;d++){var e=$(c[d]),f=e.offset().top,g=Math.floor(e.outerHeight()/2)+b;if(f+g>a&&a>f-g)return e}return $()},_dropPairedColumns:function(a){a.preventDefault(),a.dataTransfer.dropEffect="move";var b=this._getNearestPairedDatasetLi(a.originalEvent.clientY);return b.size()?this.$dragging.insertBefore(b):this.$dragging.insertAfter(this.$(".paired-columns .unpair-btn").last()),this._syncPairsToDom(),!1},_syncPairsToDom:function(){var a=[];this.$(".paired-columns .dataset.paired").each(function(){a.push($(this).data("pair"))}),this.paired=a,this._renderPaired()},_pairDragstart:function(a,b){b.$el.addClass("selected");var c=this.$(".paired-columns .dataset.selected");this.$dragging=c},_pairDragend:function(){$(".element-drop-placeholder").remove(),this.$dragging=null},toggleExtensions:function(a){var b=this;b.removeExtensions=void 0!==a?a:!b.removeExtensions,_.each(b.paired,function(a){a.customizedName||(a.name=b._guessNameForPair(a.forward,a.reverse))}),b._renderPaired(),b._renderFooter()},_changeName:function(){this._validationWarning("name",!!this._getName())},_nameCheckForEnter:function(a){13!==a.keyCode||this.blocking||this._clickCreate()},_getName:function(){return _.escape(this.$(".collection-name").val())},_clickCreate:function(){var a=this._getName();a?this.blocking||this.createList():this._validationWarning("name")},_printList:function(a){var b=this;_.each(a,function(c){a===b.paired&&b._printPair(c)})},_printPair:function(a){this.debug(a.forward.name,a.reverse.name,": ->",a.name)},toString:function(){return"PairedCollectionCreator"}});j.templates=j.templates||{main:_.template(['<div class="header flex-row no-flex"></div>','<div class="middle flex-row flex-row-container"></div>','<div class="footer flex-row no-flex">'].join("")),header:_.template(['<div class="main-help well clear">','<a class="more-help" href="javascript:void(0);">',e("More help"),"</a>",'<div class="help-content">','<a class="less-help" href="javascript:void(0);">',e("Less"),"</a>","</div>","</div>",'<div class="alert alert-dismissable">','<button type="button" class="close" data-dismiss="alert" aria-hidden="true">&times;</button>','<span class="alert-message"></span>',"</div>",'<div class="column-headers vertically-spaced flex-column-container">','<div class="forward-column flex-column column">','<div class="column-header">','<div class="column-title">','<span class="title">',e("Unpaired forward"),"</span>",'<span class="title-info unpaired-info"></span>',"</div>",'<div class="unpaired-filter forward-unpaired-filter pull-left">','<input class="search-query" placeholder="',e("Filter this list"),'" />',"</div>","</div>","</div>",'<div class="paired-column flex-column no-flex column">','<div class="column-header">','<a class="choose-filters-link" href="javascript:void(0)">',e("Choose filters"),"</a>",'<a class="clear-filters-link" href="javascript:void(0);">',e("Clear filters"),"</a><br />",'<a class="autopair-link" href="javascript:void(0);">',e("Auto-pair"),"</a>","</div>","</div>",'<div class="reverse-column flex-column column">','<div class="column-header">','<div class="column-title">','<span class="title">',e("Unpaired reverse"),"</span>",'<span class="title-info unpaired-info"></span>',"</div>",'<div class="unpaired-filter reverse-unpaired-filter pull-left">','<input class="search-query" placeholder="',e("Filter this list"),'" />',"</div>","</div>","</div>","</div>"].join("")),middle:_.template(['<div class="unpaired-columns flex-column-container scroll-container flex-row">','<div class="forward-column flex-column column">','<ol class="column-datasets"></ol>',"</div>",'<div class="paired-column flex-column no-flex column">','<ol class="column-datasets"></ol>',"</div>",'<div class="reverse-column flex-column column">','<ol class="column-datasets"></ol>',"</div>","</div>",'<div class="flexible-partition">','<div class="flexible-partition-drag" title="',e("Drag to change"),'"></div>','<div class="column-header">','<div class="column-title paired-column-title">','<span class="title"></span>',"</div>",'<a class="unpair-all-link" href="javascript:void(0);">',e("Unpair all"),"</a>","</div>","</div>",'<div class="paired-columns flex-column-container scroll-container flex-row">','<ol class="column-datasets"></ol>',"</div>"].join("")),footer:_.template(['<div class="attributes clear">','<div class="clear">','<label class="remove-extensions-prompt pull-right">',e("Remove file extensions from pair names"),"?",'<input class="remove-extensions pull-right" type="checkbox" />',"</label>","</div>",'<div class="clear">','<input class="collection-name form-control pull-right" ','placeholder="',e("Enter a name for your new list"),'" />','<div class="collection-name-prompt pull-right">',e("Name"),":</div>","</div>","</div>",'<div class="actions clear vertically-spaced">','<div class="other-options pull-left">','<button class="cancel-create btn" tabindex="-1">',e("Cancel"),"</button>",'<div class="create-other btn-group dropup">','<button class="btn btn-default dropdown-toggle" data-toggle="dropdown">',e("Create a different kind of collection"),' <span class="caret"></span>',"</button>",'<ul class="dropdown-menu" role="menu">','<li><a href="#">',e("Create a <i>single</i> pair"),"</a></li>",'<li><a href="#">',e("Create a list of <i>unpaired</i> datasets"),"</a></li>","</ul>","</div>","</div>",'<div class="main-options pull-right">','<button class="create-collection btn btn-primary">',e("Create list"),"</button>","</div>","</div>"].join("")),helpContent:_.template(["<p>",e(["Collections of paired datasets are ordered lists of dataset pairs (often forward and reverse reads). ","These collections can be passed to tools and workflows in order to have analyses done on each member of ","the entire group. This interface allows you to create a collection, choose which datasets are paired, ","and re-order the final collection."].join("")),"</p>","<p>",e(['Unpaired datasets are shown in the <i data-target=".unpaired-columns">unpaired section</i> ',"(hover over the underlined words to highlight below). ",'Paired datasets are shown in the <i data-target=".paired-columns">paired section</i>.',"<ul>To pair datasets, you can:","<li>Click a dataset in the ",'<i data-target=".unpaired-columns .forward-column .column-datasets,','.unpaired-columns .forward-column">forward column</i> ',"to select it then click a dataset in the ",'<i data-target=".unpaired-columns .reverse-column .column-datasets,','.unpaired-columns .reverse-column">reverse column</i>.',"</li>",'<li>Click one of the "Pair these datasets" buttons in the ','<i data-target=".unpaired-columns .paired-column .column-datasets,','.unpaired-columns .paired-column">middle column</i> ',"to pair the datasets in a particular row.","</li>",'<li>Click <i data-target=".autopair-link">"Auto-pair"</i> ',"to have your datasets automatically paired based on name.","</li>","</ul>"].join("")),"</p>","<p>",e(["<ul>You can filter what is shown in the unpaired sections by:","<li>Entering partial dataset names in either the ",'<i data-target=".forward-unpaired-filter input">forward filter</i> or ','<i data-target=".reverse-unpaired-filter input">reverse filter</i>.',"</li>","<li>Choosing from a list of preset filters by clicking the ",'<i data-target=".choose-filters-link">"Choose filters" link</i>.',"</li>","<li>Entering regular expressions to match dataset names. See: ",'<a href="https://developer.mozilla.org/en-US/docs/Web/JavaScript/Guide/Regular_Expressions"',' target="_blank">MDN\'s JavaScript Regular Expression Tutorial</a>. ',"Note: forward slashes (\\) are not needed.","</li>","<li>Clearing the filters by clicking the ",'<i data-target=".clear-filters-link">"Clear filters" link</i>.',"</li>","</ul>"].join("")),"</p>","<p>",e(["To unpair individual dataset pairs, click the ",'<i data-target=".unpair-btn">unpair buttons ( <span class="fa fa-unlink"></span> )</i>. ','Click the <i data-target=".unpair-all-link">"Unpair all" link</i> to unpair all pairs.'].join("")),"</p>","<p>",e(['You can include or remove the file extensions (e.g. ".fastq") from your pair names by toggling the ','<i data-target=".remove-extensions-prompt">"Remove file extensions from pair names?"</i> control.'].join("")),"</p>","<p>",e(['Once your collection is complete, enter a <i data-target=".collection-name">name</i> and ','click <i data-target=".create-collection">"Create list"</i>. ',"(Note: you do not have to pair all unpaired datasets to finish.)"].join("")),"</p>"].join(""))};var k=function(a,b){var c,d=jQuery.Deferred();if(b=_.defaults(b||{},{datasets:a,oncancel:function(){Galaxy.modal.hide(),d.reject("cancelled")},oncreate:function(a,b){Galaxy.modal.hide(),d.resolve(b)}}),!window.Galaxy||!Galaxy.modal)throw new Error("Galaxy or Galaxy.modal not found");return c=new j(b),Galaxy.modal.show({title:"Create a collection of paired datasets",body:c.$el,width:"80%",height:"800px",closing_events:!0}),c.render(),window.creator=c,d};return{PairedCollectionCreator:j,pairedCollectionCreatorModal:k,createListOfPairsCollection:g}});
 //# sourceMappingURL=../../../maps/mvc/collection/list-of-pairs-collection-creator.js.map
\ No newline at end of file
diff --git a/static/scripts/mvc/form/form-parameters.js b/static/scripts/mvc/form/form-parameters.js
index dedf7bdee81..bdb4068e63a 100644
--- a/static/scripts/mvc/form/form-parameters.js
+++ b/static/scripts/mvc/form/form-parameters.js
@@ -1,2 +1,2 @@
-define(["utils/utils","mvc/ui/ui-misc","mvc/form/form-select-content","mvc/ui/ui-select-library","mvc/ui/ui-select-ftp","mvc/ui/ui-color-picker"],function(a,b,c,d,e,f){return Backbone.Model.extend({types:{text:"_fieldText",select:"_fieldSelect",data_column:"_fieldSelect",genomebuild:"_fieldSelect",data:"_fieldData",data_collection:"_fieldData",integer:"_fieldSlider","float":"_fieldSlider","boolean":"_fieldBoolean",drill_down:"_fieldDrilldown",color:"_fieldColor",hidden:"_fieldHidden",hidden_data:"_fieldHidden",baseurl:"_fieldHidden",library_data:"_fieldLibrary",ftpfile:"_fieldFtp"},initialize:function(a){this.app=a},create:function(a){void 0===a.value&&(a.value=null),void 0===a.default_value&&(a.default_value=a.value);var b=null,c=this.types[a.type];return c&&"function"==typeof this[c]&&(b=this[c].call(this,a)),b||(this.app.incompatible=!0,b=a.options?this._fieldSelect(a):this._fieldText(a),console.debug("tools-form::_addRow() : Auto matched field type ("+a.type+").")),void 0!==a.value&&b.value(a.value),b},_fieldData:function(b){if(this.app.options.is_workflow)return b.info="Data input '"+b.name+"' ("+a.textify(b.extensions.toString())+")",b.value=null,this._fieldHidden(b);var d=this;return new c.View(this.app,{id:"field-"+b.id,extensions:b.extensions,optional:b.optional,multiple:b.multiple,type:b.type,data:b.options,onchange:function(){d.app.trigger("change")}})},_fieldSelect:function(a){if(0==a.options.length&&this.app.options.is_workflow)return this._fieldText(a);"data_column"==a.type&&(a.error_text="Missing columns in referenced dataset.");var c=[];for(var d in a.options){var e=a.options[d];c.push({label:e[0],value:e[1]})}var f=b.Select;switch(a.display){case"checkboxes":f=b.Checkbox;break;case"radio":f=b.Radio}var g=this;return new f.View({id:"field-"+a.id,data:c,error_text:a.error_text||"No options available",optional:a.optional&&null===a.default_value,multiple:a.multiple,optional:a.optional,searchable:a.searchable,onchange:function(){g.app.trigger("change")}})},_fieldDrilldown:function(a){if(0==a.options.length&&this.app.options.is_workflow)return this._fieldText(a);var c=this;return new b.Drilldown.View({id:"field-"+a.id,data:a.options,display:a.display,onchange:function(){c.app.trigger("change")}})},_fieldText:function(c){if(c.options)if(c.area=c.multiple,a.validate(c.value)){if($.isArray(c.value)){var d="";for(var e in c.value){if(d+=String(c.value[e]),!c.multiple)break;d+="\n"}c.value=d}}else c.value="";var f=this;return new b.Input({id:"field-"+c.id,area:c.area,onchange:function(){f.app.trigger("change")}})},_fieldSlider:function(a){var c=this;return new b.Slider.View({id:"field-"+a.id,precise:"float"==a.type,min:a.min,max:a.max,onchange:function(){c.app.trigger("change")}})},_fieldHidden:function(a){return new b.Hidden({id:"field-"+a.id,info:a.info})},_fieldBoolean:function(a){var c=this;return new b.RadioButton.View({id:"field-"+a.id,data:[{label:"Yes",value:"true"},{label:"No",value:"false"}],onchange:function(){c.app.trigger("change")}})},_fieldColor:function(a){var b=this;return new f({id:"field-"+a.id,onchange:function(){b.app.trigger("change")}})},_fieldLibrary:function(a){var b=this;return new d.View({id:"field-"+a.id,optional:a.optional,multiple:a.multiple,onchange:function(){b.app.trigger("change")}})},_fieldFtp:function(a){var b=this;return new e.View({id:"field-"+a.id,optional:a.optional,multiple:a.multiple,onchange:function(){b.app.trigger("change")}})}})});
+define(["utils/utils","mvc/ui/ui-misc","mvc/form/form-select-content","mvc/ui/ui-select-library","mvc/ui/ui-select-ftp","mvc/ui/ui-color-picker"],function(a,b,c,d,e,f){return Backbone.Model.extend({types:{text:"_fieldText",select:"_fieldSelect",data_column:"_fieldSelect",genomebuild:"_fieldSelect",data:"_fieldData",data_collection:"_fieldData",integer:"_fieldSlider","float":"_fieldSlider","boolean":"_fieldBoolean",drill_down:"_fieldDrilldown",color:"_fieldColor",hidden:"_fieldHidden",hidden_data:"_fieldHidden",baseurl:"_fieldHidden",library_data:"_fieldLibrary",ftpfile:"_fieldFtp"},initialize:function(a){this.app=a},create:function(a){void 0===a.value&&(a.value=null),void 0===a.default_value&&(a.default_value=a.value);var b=null,c=this.types[a.type];return c&&"function"==typeof this[c]&&(b=this[c].call(this,a)),b||(this.app.incompatible=!0,b=a.options?this._fieldSelect(a):this._fieldText(a),Galaxy.emit.debug("form-parameters::_addRow()","Auto matched field type ("+a.type+").")),void 0!==a.value&&b.value(a.value),b},_fieldData:function(b){if(this.app.options.is_workflow)return b.info="Data input '"+b.name+"' ("+a.textify(b.extensions.toString())+")",b.value=null,this._fieldHidden(b);var d=this;return new c.View(this.app,{id:"field-"+b.id,extensions:b.extensions,optional:b.optional,multiple:b.multiple,type:b.type,data:b.options,onchange:function(){d.app.trigger("change")}})},_fieldSelect:function(a){if(0==a.options.length&&this.app.options.is_workflow)return this._fieldText(a);"data_column"==a.type&&(a.error_text="Missing columns in referenced dataset.");var c=[];for(var d in a.options){var e=a.options[d];c.push({label:e[0],value:e[1]})}var f=b.Select;switch(a.display){case"checkboxes":f=b.Checkbox;break;case"radio":f=b.Radio}var g=this;return new f.View({id:"field-"+a.id,data:c,error_text:a.error_text||"No options available",optional:a.optional&&null===a.default_value,multiple:a.multiple,optional:a.optional,searchable:a.searchable,onchange:function(){g.app.trigger("change")}})},_fieldDrilldown:function(a){if(0==a.options.length&&this.app.options.is_workflow)return this._fieldText(a);var c=this;return new b.Drilldown.View({id:"field-"+a.id,data:a.options,display:a.display,onchange:function(){c.app.trigger("change")}})},_fieldText:function(c){if(c.options)if(c.area=c.multiple,a.validate(c.value)){if($.isArray(c.value)){var d="";for(var e in c.value){if(d+=String(c.value[e]),!c.multiple)break;d+="\n"}c.value=d}}else c.value="";var f=this;return new b.Input({id:"field-"+c.id,area:c.area,onchange:function(){f.app.trigger("change")}})},_fieldSlider:function(a){var c=this;return new b.Slider.View({id:"field-"+a.id,precise:"float"==a.type,min:a.min,max:a.max,onchange:function(){c.app.trigger("change")}})},_fieldHidden:function(a){return new b.Hidden({id:"field-"+a.id,info:a.info})},_fieldBoolean:function(a){var c=this;return new b.RadioButton.View({id:"field-"+a.id,data:[{label:"Yes",value:"true"},{label:"No",value:"false"}],onchange:function(){c.app.trigger("change")}})},_fieldColor:function(a){var b=this;return new f({id:"field-"+a.id,onchange:function(){b.app.trigger("change")}})},_fieldLibrary:function(a){var b=this;return new d.View({id:"field-"+a.id,optional:a.optional,multiple:a.multiple,onchange:function(){b.app.trigger("change")}})},_fieldFtp:function(a){var b=this;return new e.View({id:"field-"+a.id,optional:a.optional,multiple:a.multiple,onchange:function(){b.app.trigger("change")}})}})});
 //# sourceMappingURL=../../../maps/mvc/form/form-parameters.js.map
\ No newline at end of file
diff --git a/static/scripts/mvc/form/form-repeat.js b/static/scripts/mvc/form/form-repeat.js
index cda21f7fb8d..31a60693960 100644
--- a/static/scripts/mvc/form/form-repeat.js
+++ b/static/scripts/mvc/form/form-repeat.js
@@ -1,2 +1,2 @@
-define(["utils/utils","mvc/ui/ui-table","mvc/ui/ui-portlet","mvc/ui/ui-misc"],function(a,b,c,d){var e=Backbone.View.extend({optionsDefault:{title:"Section",max:null,min:null},initialize:function(c){this.options=a.merge(c,this.optionsDefault),this.setElement("<div/>");this.button_new=new d.ButtonIcon({icon:"fa-plus",title:"Insert "+c.title_new,tooltip:"Add new "+c.title_new+" block",floating:"clear",onclick:function(){c.onnew&&c.onnew()}}),this.table=new b.View({cls:"ui-table-plain",content:""}),this.$el.append(this.table.$el),this.$el.append($("<div/>").append(this.button_new.$el)),this.list={},this.n=0},size:function(){return this.n},add:function(a){if(!a.id||this.list[a.id])return void console.debug("form-repeat::add - Duplicate repeat block id.");this.n++;var b=new d.ButtonIcon({icon:"fa-trash-o",tooltip:"Delete this repeat block",cls:"ui-button-icon-plain",onclick:function(){a.ondel&&a.ondel()}}),e=new c.View({id:a.id,title:"placeholder",cls:"ui-portlet-repeat",operations:{button_delete:b}});e.append(a.$el),e.$el.addClass("section-row"),this.list[a.id]=e,this.table.add(e.$el),this.table.append("row_"+a.id,!0),this.options.max>0&&this.n>=this.options.max&&this.button_new.disable(),this._refresh()},del:function(a){if(!this.list[a])return void console.debug("form-repeat::del - Invalid repeat block id.");this.n--;var b=this.table.get("row_"+a);b.remove(),delete this.list[a],this.button_new.enable(),this._refresh()},_refresh:function(){var a=0;for(var b in this.list){var c=this.list[b];c.title(++a+": "+this.options.title),this.n>this.options.min?c.showOperation("button_delete"):c.hideOperation("button_delete")}}});return{View:e}});
+define(["utils/utils","mvc/ui/ui-table","mvc/ui/ui-portlet","mvc/ui/ui-misc"],function(a,b,c,d){var e=Backbone.View.extend({optionsDefault:{title:"Section",max:null,min:null},initialize:function(c){this.options=a.merge(c,this.optionsDefault),this.setElement("<div/>");this.button_new=new d.ButtonIcon({icon:"fa-plus",title:"Insert "+c.title_new,tooltip:"Add new "+c.title_new+" block",floating:"clear",onclick:function(){c.onnew&&c.onnew()}}),this.table=new b.View({cls:"ui-table-plain",content:""}),this.$el.append(this.table.$el),this.$el.append($("<div/>").append(this.button_new.$el)),this.list={},this.n=0},size:function(){return this.n},add:function(a){if(!a.id||this.list[a.id])return void Galaxy.emit.debug("form-repeat::add()","Duplicate repeat block id.");this.n++;var b=new d.ButtonIcon({icon:"fa-trash-o",tooltip:"Delete this repeat block",cls:"ui-button-icon-plain",onclick:function(){a.ondel&&a.ondel()}}),e=new c.View({id:a.id,title:"placeholder",cls:"ui-portlet-repeat",operations:{button_delete:b}});e.append(a.$el),e.$el.addClass("section-row"),this.list[a.id]=e,this.table.add(e.$el),this.table.append("row_"+a.id,!0),this.options.max>0&&this.n>=this.options.max&&this.button_new.disable(),this._refresh()},del:function(a){if(!this.list[a])return void Galaxy.emit.debug("form-repeat::del()","Invalid repeat block id.");this.n--;var b=this.table.get("row_"+a);b.remove(),delete this.list[a],this.button_new.enable(),this._refresh()},_refresh:function(){var a=0;for(var b in this.list){var c=this.list[b];c.title(++a+": "+this.options.title),this.n>this.options.min?c.showOperation("button_delete"):c.hideOperation("button_delete")}}});return{View:e}});
 //# sourceMappingURL=../../../maps/mvc/form/form-repeat.js.map
\ No newline at end of file
diff --git a/static/scripts/mvc/form/form-select-content.js b/static/scripts/mvc/form/form-select-content.js
index b071f73ba0a..986e90d627b 100644
--- a/static/scripts/mvc/form/form-select-content.js
+++ b/static/scripts/mvc/form/form-select-content.js
@@ -1,2 +1,2 @@
-define(["utils/utils","mvc/ui/ui-misc","mvc/ui/ui-tabs","mvc/tools/tools-template"],function(a,b){var c=Backbone.View.extend({initialize:function(c,d){this.app=c,this.options=d,this.history={};var e=this;this.setElement('<div class="ui-select-content"/>'),this.list={};var f=[];this.mode="data_collection"==d.type?"collection":d.multiple?"multiple":"single",this.current=this.mode,this.list={};var g=a.textify(d.extensions),h="No dataset available.";g&&(h="No "+g+" dataset available.");var i="No dataset list available.";g&&(i="No "+g+" dataset collection available."),"single"==this.mode&&(f.push({icon:"fa-file-o",value:"single",tooltip:"Single dataset"}),this.select_single=new b.Select.View({optional:d.optional,error_text:h,onchange:function(){e.trigger("change")}}),this.list.single={field:this.select_single,type:"hda"}),("single"==this.mode||"multiple"==this.mode)&&(f.push({icon:"fa-files-o",value:"multiple",tooltip:"Multiple datasets"}),this.select_multiple=new b.Select.View({multiple:!0,searchable:!1,optional:d.optional,error_text:h,onchange:function(){e.trigger("change")}}),this.list.multiple={field:this.select_multiple,type:"hda"}),("single"==this.mode||"multiple"==this.mode||"collection"==this.mode)&&(f.push({icon:"fa-folder-o",value:"collection",tooltip:"Dataset collection"}),this.select_collection=new b.Select.View({error_text:i,optional:d.optional,onchange:function(){e.trigger("change")}}),this.list.collection={field:this.select_collection,type:"hdca"}),this.button_type=new b.RadioButton.View({value:this.current,data:f,onchange:function(a){e.current=a,e.refresh(),e.trigger("change")}}),this.$batch=$(this.template_batch());var j=_.size(this.list),k=0;j>1&&(this.$el.append(this.button_type.$el),k=Math.max(0,35*_.size(this.list))+"px");for(var l in this.list)this.$el.append(this.list[l].field.$el.css({"margin-left":k}));this.$el.append(this.$batch.css({"margin-left":k})),this.update(d.data),void 0!==this.options.value&&this.value(this.options.value),this.refresh(),this.on("change",function(){d.onchange&&d.onchange(e.value())})},wait:function(){for(var a in this.list)this.list[a].field.wait()},unwait:function(){for(var a in this.list)this.list[a].field.unwait()},update:function(a){function b(a,b){if(a){var d=[];for(var e in b){var f=b[e];d.push({label:f.hid+": "+f.name,value:f.id}),c.history[f.id+"_"+f.src]=f}a.update(d)}}var c=this;b(this.select_single,a.hda),b(this.select_multiple,a.hda),b(this.select_collection,a.hdca)},value:function(a){if(void 0!==a)if(a&&a.values)try{var b=[];for(var c in a.values)b.push(a.values[c].id);a&&a.values.length>0&&"hdca"==a.values[0].src?(this.current="collection",this.select_collection.value(b[0])):"multiple"==this.mode?(this.current="multiple",this.select_multiple.value(b)):(this.current="single",this.select_single.value(b[0]))}catch(d){console.debug("tools-select-content::value() - Skipped.")}else for(var c in this.list)this.list[c].field.value(null);this.refresh();var e=this._select().value();if(null===e)return null;if(e instanceof Array||(e=[e]),0===e.length)return null;var f={batch:this._batch(),values:[]};for(var c in e){var g=this.history[e[c]+"_"+this.list[this.current].type];if(!g)return null;f.values.push(g)}return f.values.sort(function(a,b){return a.hid-b.hid}),f},refresh:function(){this.button_type.value(this.current);for(var a in this.list){var b=this.list[a].field.$el;this.current==a?b.show():b.hide()}this._batch()?this.$batch.show():this.$batch.hide()},_select:function(){return this.list[this.current].field},_batch:function(){if("collection"==this.current){var a=this.history[this._select().value()+"_hdca"];if(a&&a.map_over_type)return!0}return"single"!=this.current&&"single"==this.mode?!0:!1},template_batch:function(){return'<div class="ui-table-form-info"><i class="fa fa-sitemap" style="font-size: 1.2em; padding: 2px 5px;"/>This is a batch mode input field. A separate job will be triggered for each dataset.</div>'}});return{View:c}});
+define(["utils/utils","mvc/ui/ui-misc","mvc/ui/ui-tabs","mvc/tools/tools-template"],function(a,b){var c=Backbone.View.extend({initialize:function(c,d){this.app=c,this.options=d,this.history={};var e=this;this.setElement('<div class="ui-select-content"/>'),this.list={};var f=[];this.mode="data_collection"==d.type?"collection":d.multiple?"multiple":"single",this.current=this.mode,this.list={};var g=a.textify(d.extensions),h="No dataset available.";g&&(h="No "+g+" dataset available.");var i="No dataset list available.";g&&(i="No "+g+" dataset collection available."),"single"==this.mode&&(f.push({icon:"fa-file-o",value:"single",tooltip:"Single dataset"}),this.select_single=new b.Select.View({optional:d.optional,error_text:h,onchange:function(){e.trigger("change")}}),this.list.single={field:this.select_single,type:"hda"}),("single"==this.mode||"multiple"==this.mode)&&(f.push({icon:"fa-files-o",value:"multiple",tooltip:"Multiple datasets"}),this.select_multiple=new b.Select.View({multiple:!0,searchable:!1,optional:d.optional,error_text:h,onchange:function(){e.trigger("change")}}),this.list.multiple={field:this.select_multiple,type:"hda"}),("single"==this.mode||"multiple"==this.mode||"collection"==this.mode)&&(f.push({icon:"fa-folder-o",value:"collection",tooltip:"Dataset collection"}),this.select_collection=new b.Select.View({error_text:i,optional:d.optional,onchange:function(){e.trigger("change")}}),this.list.collection={field:this.select_collection,type:"hdca"}),this.button_type=new b.RadioButton.View({value:this.current,data:f,onchange:function(a){e.current=a,e.refresh(),e.trigger("change")}}),this.$batch=$(this.template_batch());var j=_.size(this.list),k=0;j>1&&(this.$el.append(this.button_type.$el),k=Math.max(0,35*_.size(this.list))+"px");for(var l in this.list)this.$el.append(this.list[l].field.$el.css({"margin-left":k}));this.$el.append(this.$batch.css({"margin-left":k})),this.update(d.data),void 0!==this.options.value&&this.value(this.options.value),this.refresh(),this.on("change",function(){d.onchange&&d.onchange(e.value())})},wait:function(){for(var a in this.list)this.list[a].field.wait()},unwait:function(){for(var a in this.list)this.list[a].field.unwait()},update:function(a){function b(a,b){if(a){var d=[];for(var e in b){var f=b[e];d.push({label:f.hid+": "+f.name,value:f.id}),c.history[f.id+"_"+f.src]=f}a.update(d)}}var c=this;b(this.select_single,a.hda),b(this.select_multiple,a.hda),b(this.select_collection,a.hdca)},value:function(a){if(void 0!==a)if(a&&a.values)try{var b=[];for(var c in a.values)b.push(a.values[c].id);a&&a.values.length>0&&"hdca"==a.values[0].src?(this.current="collection",this.select_collection.value(b[0])):"multiple"==this.mode?(this.current="multiple",this.select_multiple.value(b)):(this.current="single",this.select_single.value(b[0]))}catch(d){Galaxy.emit.debug("tools-select-content::value()","Skipped.")}else for(var c in this.list)this.list[c].field.value(null);this.refresh();var e=this._select().value();if(null===e)return null;if(e instanceof Array||(e=[e]),0===e.length)return null;var f={batch:this._batch(),values:[]};for(var c in e){var g=this.history[e[c]+"_"+this.list[this.current].type];if(!g)return null;f.values.push(g)}return f.values.sort(function(a,b){return a.hid-b.hid}),f},refresh:function(){this.button_type.value(this.current);for(var a in this.list){var b=this.list[a].field.$el;this.current==a?b.show():b.hide()}this._batch()?this.$batch.show():this.$batch.hide()},_select:function(){return this.list[this.current].field},_batch:function(){if("collection"==this.current){var a=this.history[this._select().value()+"_hdca"];if(a&&a.map_over_type)return!0}return"single"!=this.current&&"single"==this.mode?!0:!1},template_batch:function(){return'<div class="ui-table-form-info"><i class="fa fa-sitemap" style="font-size: 1.2em; padding: 2px 5px;"/>This is a batch mode input field. A separate job will be triggered for each dataset.</div>'}});return{View:c}});
 //# sourceMappingURL=../../../maps/mvc/form/form-select-content.js.map
\ No newline at end of file
diff --git a/static/scripts/mvc/form/form-view.js b/static/scripts/mvc/form/form-view.js
index e05d4ca565d..2581097b955 100644
--- a/static/scripts/mvc/form/form-view.js
+++ b/static/scripts/mvc/form/form-view.js
@@ -1,2 +1,2 @@
-define(["utils/utils","mvc/ui/ui-portlet","mvc/ui/ui-misc","mvc/form/form-section","mvc/form/form-data"],function(a,b,c,d,e){return Backbone.View.extend({initialize:function(b){this.optionsDefault={is_workflow:!1,initial_errors:!1,cls:"ui-portlet-limited"},this.options=a.merge(b,this.optionsDefault),console.debug(this.options);var d=parent.Galaxy;this.modal=d&&d.modal?d.modal:new c.Modal.View,this.setElement("<div/>"),this._build()},update:function(a){var b=this;this.data.matchModel(a,function(a,c){var d=b.input_list[a];if(d&&d.options&&!_.isEqual(d.options,c.options)){d.options=c.options;var e=b.field_list[a];if(e.update){var f=[];if(-1!=["data","data_collection","drill_down"].indexOf(d.type))f=d.options;else for(var g in c.options){var h=c.options[g];h.length>2&&f.push({label:h[0],value:h[1]})}e.update(f),e.trigger("change"),console.debug("Updating options for "+a)}}})},wait:function(a){for(var b in this.input_list){var c=this.field_list[b],d=this.input_list[b];d.is_dynamic&&c.wait&&c.unwait&&(a?c.wait():c.unwait())}},highlight:function(a,b,c){var d=this.element_list[a];if(d&&(d.error(b||"Please verify this parameter."),this.trigger("expand",a),!c))if(self==top){var e=this.$el.parents().filter(function(){return"auto"==$(this).css("overflow")}).first();e.animate({scrollTop:e.scrollTop()+d.$el.offset().top-50},500)}else $("html, body").animate({scrollTop:d.$el.offset().top-20},500)},errors:function(a){if(this.trigger("reset"),a&&a.errors){var b=this.data.matchResponse(a.errors);for(var c in this.element_list){{this.element_list[c]}b[c]&&this.highlight(c,b[c],!0)}}},_build:function(){var a=this;this.off("change"),this.off("reset"),this.field_list={},this.input_list={},this.element_list={},this.data=new e(this),this._renderForm(),this.data.create(),this.options.initial_errors&&this.errors(this.options);var b=this.data.checksum();this.on("change",function(){var c=a.data.checksum();c!=b&&(b=c,a.options.onchange&&a.options.onchange())}),this.on("reset",function(){for(var a in this.element_list)this.element_list[a].reset()})},_renderForm:function(){this.message=new c.Message,this.section=new d.View(this,{inputs:this.options.inputs}),$(".tooltip").remove(),this.portlet=new b.View({icon:"fa-wrench",title:this.options.title,cls:this.options.cls,operations:this.options.operations,buttons:this.options.buttons}),this.portlet.append(this.message.$el.addClass("ui-margin-top")),this.portlet.append(this.section.$el),this.$el.empty(),this.$el.append(this.portlet.$el),this.options.message&&this.message.update({persistent:!0,status:"warning",message:this.options.message}),console.debug("tools-form-base::initialize() - Completed.")}})});
+define(["utils/utils","mvc/ui/ui-portlet","mvc/ui/ui-misc","mvc/form/form-section","mvc/form/form-data"],function(a,b,c,d,e){return Backbone.View.extend({initialize:function(b){this.optionsDefault={is_workflow:!1,initial_errors:!1,cls:"ui-portlet-limited"},this.options=a.merge(b,this.optionsDefault),Galaxy.emit.debug("form-view::initialize()","Ready to build form.",this.options);var d=parent.Galaxy;this.modal=d&&d.modal?d.modal:new c.Modal.View,this.setElement("<div/>"),this._build()},update:function(a){var b=this;this.data.matchModel(a,function(a,c){var d=b.input_list[a];if(d&&d.options&&!_.isEqual(d.options,c.options)){d.options=c.options;var e=b.field_list[a];if(e.update){var f=[];if(-1!=["data","data_collection","drill_down"].indexOf(d.type))f=d.options;else for(var g in c.options){var h=c.options[g];h.length>2&&f.push({label:h[0],value:h[1]})}e.update(f),e.trigger("change"),Galaxy.emit.debug("form-view::update()","Updating options for "+a)}}})},wait:function(a){for(var b in this.input_list){var c=this.field_list[b],d=this.input_list[b];d.is_dynamic&&c.wait&&c.unwait&&(a?c.wait():c.unwait())}},highlight:function(a,b,c){var d=this.element_list[a];if(d&&(d.error(b||"Please verify this parameter."),this.trigger("expand",a),!c))if(self==top){var e=this.$el.parents().filter(function(){return"auto"==$(this).css("overflow")}).first();e.animate({scrollTop:e.scrollTop()+d.$el.offset().top-50},500)}else $("html, body").animate({scrollTop:d.$el.offset().top-20},500)},errors:function(a){if(this.trigger("reset"),a&&a.errors){var b=this.data.matchResponse(a.errors);for(var c in this.element_list){{this.element_list[c]}b[c]&&this.highlight(c,b[c],!0)}}},_build:function(){var a=this;this.off("change"),this.off("reset"),this.field_list={},this.input_list={},this.element_list={},this.data=new e(this),this._renderForm(),this.data.create(),this.options.initial_errors&&this.errors(this.options);var b=this.data.checksum();this.on("change",function(){var c=a.data.checksum();c!=b&&(b=c,a.options.onchange&&a.options.onchange())}),this.on("reset",function(){for(var a in this.element_list)this.element_list[a].reset()})},_renderForm:function(){this.message=new c.Message,this.section=new d.View(this,{inputs:this.options.inputs}),$(".tooltip").remove(),this.portlet=new b.View({icon:"fa-wrench",title:this.options.title,cls:this.options.cls,operations:this.options.operations,buttons:this.options.buttons}),this.portlet.append(this.message.$el.addClass("ui-margin-top")),this.portlet.append(this.section.$el),this.$el.empty(),this.$el.append(this.portlet.$el),this.options.message&&this.message.update({persistent:!0,status:"warning",message:this.options.message}),Galaxy.emit.debug("form-view::initialize()","Completed")}})});
 //# sourceMappingURL=../../../maps/mvc/form/form-view.js.map
\ No newline at end of file
diff --git a/static/scripts/mvc/grid/grid-template.js b/static/scripts/mvc/grid/grid-template.js
index 59cfa3ab154..ec652ecc2eb 100644
--- a/static/scripts/mvc/grid/grid-template.js
+++ b/static/scripts/mvc/grid/grid-template.js
@@ -1,2 +1,2 @@
-define(["utils/utils"],function(a){return{grid:function(a){var b="";return b=a.embedded?this.grid_header(a)+this.grid_table(a):'<div class="loading-elt-overlay"></div><table><tr><td width="75%">'+this.grid_header(a)+'</td><td></td><td></td></tr><tr><td width="100%" id="grid-message" valign="top"></td><td></td><td></td></tr></table>'+this.grid_table(a),a.info_text&&(b+='<br><div class="toolParamHelp" style="clear: both;">'+a.info_text+"</div>"),b},grid_table:function(){return'<form method="post" onsubmit="return false;"><table id="grid-table" class="grid"><thead id="grid-table-header"></thead><tbody id="grid-table-body"></tbody><tfoot id="grid-table-footer"></tfoot></table></form>'},grid_header:function(a){var b='<div class="grid-header">';if(a.embedded||(b+="<h2>"+a.title+"</h2>"),a.global_actions){b+='<ul class="manage-table-actions">';var c=a.global_actions.length>=3;c&&(b+='<li><a class="action-button" id="popup-global-actions" class="menubutton">Actions</a></li><div popupmenu="popup-global-actions">');for(i in a.global_actions){var d=a.global_actions[i],e="";e=d.inbound?"use-inbound":"use-outbound",b+='<li><a class="action-button '+e+'" href="'+d.url_args+'" onclick="return false;">'+d.label+"</a></li>"}c&&(b+="</div>"),b+="</ul>"}return a.insert&&(b+=a.insert),b+=this.grid_filters(a),b+="</div>"},header:function(a){var b="<tr>";a.show_item_checkboxes&&(b+="<th>",a.items.length>0&&(b+='<input type="checkbox" id="check_all" name=select_all_checkbox value="true"><input type="hidden" name=select_all_checkbox value="true">'),b+="</th>");for(var c in a.columns){var d=a.columns[c];d.visible&&(b+='<th id="'+d.key+'-header">',b+=d.href?'<a href="'+d.href+'" class="sort-link" sort_key="'+d.key+'">'+d.label+"</a>":d.label,b+='<span class="sort-arrow">'+d.extra+"</span></th>")}return b+="</tr>"},body:function(a){var b="",c=0,d=a.items.length;0==d&&(b+='<tr><td colspan="100"><em>No Items</em></td></tr>',c=1);for(var e in a.items){var f=a.items[e],g=f.encode_id;b+="<tr ",a.current_item_id==f.id&&(b+='class="current"'),b+=">",a.show_item_checkboxes&&(b+='<td style="width: 1.5em;"><input type="checkbox" name="id" value="'+g+'" id="'+g+'" class="grid-row-select-checkbox" /></td>');for(j in a.columns){var h=a.columns[j];if(h.visible){var i="";h.nowrap&&(i='style="white-space:nowrap;"');var k=f.column_config[h.label],l=k.link,m=k.value,n=k.inbound;"string"===jQuery.type(m)&&(m=m.replace(/\/\//g,"/"));var o="",p="";if(h.attach_popup&&(o="grid-"+e+"-popup",p="menubutton",""!=l&&(p+=" split"),p+=" popup"),b+="<td "+i+">",l){0!=a.operations.length&&(b+='<div id="'+o+'" class="'+p+'" style="float: left;">');var q="";q=n?"use-inbound":"use-outbound",b+='<a class="label '+q+'" href="'+l+'" onclick="return false;">'+m+"</a>",0!=a.operations.length&&(b+="</div>")}else b+='<div id="'+o+'" class="'+p+'"><label id="'+h.label_id_prefix+g+'" for="'+g+'">'+(m||"")+"</label></div>";b+="</td>"}}b+="</tr>",c++}return b},footer:function(a){var b="";if(a.use_paging&&a.num_pages>1){var c=a.num_page_links,d=a.cur_page_num,e=a.num_pages,f=c/2,g=d-f,h=0;0>=g&&(g=1,h=f-(d-g));var j=f+h,k=d+j;e>=k?max_offset=0:(k=e,max_offset=j-(k+1-d)),0!=max_offset&&(g-=max_offset,1>g&&(g=1)),b+='<tr id="page-links-row">',a.show_item_checkboxes&&(b+="<td></td>"),b+='<td colspan="100"><span id="page-link-container">Page:',g>1&&(b+='<span class="page-link" id="page-link-1"><a href="javascript:void(0);" page_num="1" onclick="return false;">1</a></span> ...');for(var l=g;k+1>l;l++)b+=l==a.cur_page_num?'<span class="page-link inactive-link" id="page-link-'+l+'">'+l+"</span>":'<span class="page-link" id="page-link-'+l+'"><a href="javascript:void(0);" onclick="return false;" page_num="'+l+'">'+l+"</a></span>";e>k&&(b+='...<span class="page-link" id="page-link-'+e+'"><a href="javascript:void(0);" onclick="return false;" page_num="'+e+'">'+e+"</a></span>"),b+="</span>",b+='<span class="page-link" id="show-all-link-span"> | <a href="javascript:void(0);" onclick="return false;" page_num="all">Show All</a></span></td></tr>'}if(a.show_item_checkboxes){b+='<tr><input type="hidden" id="operation" name="operation" value=""><td></td><td colspan="100">For <span class="grid-selected-count"></span> selected '+a.get_class_plural+": ";for(i in a.operations){var m=a.operations[i];m.allow_multiple&&(b+='<input type="button" value="'+m.label+'" class="operation-button action-button">&nbsp;')}b+="</td></tr>"}var n=!1;for(i in a.operations)if(a.operations[i].global_operation){n=!0;break}if(n){b+='<tr><td colspan="100">';for(i in a.operations){var m=a.operations[i];m.global_operation&&(b+='<a class="action-button" href="'+m.global_operation+'">'+m.label+"</a>")}b+="</td></tr>"}return a.legend&&(b+='<tr><td colspan="100">'+a.legend+"</td></tr>"),b},message:function(a){return'<p><div class="'+a.status+'message transient-message">'+a.message+'</div><div style="clear: both"></div></p>'},grid_filters:function(a){var b=a.default_filter_dict,c=a.filters,d="none";a.advanced_search&&(d="block");var e=!1;for(var f in a.columns){var g=a.columns[f];if("advanced"==g.filterable){var h=g.key,i=c[h],j=b[h];i&&j&&i!=j&&(d="block"),e=!0}}var k="block";"block"==d&&(k="none");var l='<div id="standard-search" style="display: '+k+';"><table><tr><td style="padding: 0;"><table>';for(var f in a.columns){var g=a.columns[f];"standard"==g.filterable&&(l+=this.grid_column_filter(a,g))}l+="</table></td></tr><tr><td>",e&&(l+='<a href="" class="advanced-search-toggle">Advanced Search</a>'),l+="</td></tr></table></div>",l+='<div id="advanced-search" style="display: '+d+'; margin-top: 5px; border: 1px solid #ccc;"><table><tr><td style="text-align: left" colspan="100"><a href="" class="advanced-search-toggle">Close Advanced Search</a></td></tr>';for(var f in a.columns){var g=a.columns[f];"advanced"==g.filterable&&(l+=this.grid_column_filter(a,g))}return l+="</table></div>"},grid_column_filter:function(a,b){var c=(a.default_filter_dict,a.filters),d=b.label,e=b.key;"advanced"==b.filterable&&(d=d.toLowerCase());var f="<tr>";if("advanced"==b.filterable&&(f+='<td align="left" style="padding-left: 10px">'+d+":</td>"),f+='<td style="padding-bottom: 1px;">',b.is_text){f+='<form class="text-filter-form" column_key="'+e+'" action="'+a.url+'" method="get" >';for(k in a.columns){var g=a.columns[k],h=c[g.key];h&&"All"!=h&&(g.is_text&&(h=JSON.stringify(h)),f+='<input type="hidden" id="'+g.key+'" name="f-'+g.key+'" value="'+h+'"/>')}f+='<span id="'+e+'-filtering-criteria">';var i=c[e];if(i){var j=jQuery.type(i);if("string"==j&&"All"!=i&&(f+=this.filter_element(e,i)),"array"==j)for(var k in i){var l=i[k],m=i;m=m.slice(k),f+=this.filter_element(e,l)}}f+="</span>";var n="";if("standard"==b.filterable){n=b.label.toLowerCase();var o=n.length;20>o&&(o=20),o+=4}f+='<span class="search-box"><input class="search-box-input" id="input-'+e+'-filter" name="f-'+e+'" type="text" placeholder="'+n+'" size="'+o+'"/><button type="submit" style="background: transparent; border: none; padding: 4px; margin: 0px;"><i class="fa fa-search"></i></button></span></form>'}else{f+='<span id="'+e+'-filtering-criteria">';var p=!1;for(cf_label in a.categorical_filters[e]){var q=a.categorical_filters[e][cf_label],r="",s="";for(key in q)r=key,s=q[key];p&&(f+=" | "),p=!0;var l=c[e];f+=l&&q[e]&&l==s?'<span class="categorical-filter '+e+'-filter current-filter">'+cf_label+"</span>":'<span class="categorical-filter '+e+'-filter"><a href="javascript:void(0);" filter_key="'+r+'" filter_val="'+s+'">'+cf_label+"</a></span>"}f+="</span>"}return f+="</td></tr>"},filter_element:function(b,c){return c=a.sanitize(c),'<span class="text-filter-val">'+c+'<a href="javascript:void(0);" filter_key="'+b+'" filter_val="'+c+'"><i class="fa fa-times" style="padding-left: 5px; padding-bottom: 6px;"/></a></span>'}}});
+define(["utils/utils"],function(a){return{grid:function(a){var b="";return b=a.embedded?this.grid_header(a)+this.grid_table(a):'<div class="loading-elt-overlay"></div><table><tr><td width="75%">'+this.grid_header(a)+'</td><td></td><td></td></tr><tr><td width="100%" id="grid-message" valign="top"></td><td></td><td></td></tr></table>'+this.grid_table(a),a.info_text&&(b+='<br><div class="toolParamHelp" style="clear: both;">'+a.info_text+"</div>"),b},grid_table:function(){return'<form method="post" onsubmit="return false;"><table id="grid-table" class="grid"><thead id="grid-table-header"></thead><tbody id="grid-table-body"></tbody><tfoot id="grid-table-footer"></tfoot></table></form>'},grid_header:function(a){var b='<div class="grid-header">';if(a.embedded||(b+="<h2>"+a.title+"</h2>"),a.global_actions){b+='<ul class="manage-table-actions">';var c=a.global_actions.length>=3;c&&(b+='<li><a class="action-button" id="popup-global-actions" class="menubutton">Actions</a></li><div popupmenu="popup-global-actions">');for(i in a.global_actions){var d=a.global_actions[i],e="";e=d.inbound?"use-inbound":"use-outbound",b+='<li><a class="action-button '+e+'" href="'+d.url_args+'" onclick="return false;">'+d.label+"</a></li>"}c&&(b+="</div>"),b+="</ul>"}return a.insert&&(b+=a.insert),b+=this.grid_filters(a),b+="</div>"},header:function(a){var b="<tr>";a.show_item_checkboxes&&(b+="<th>",a.items.length>0&&(b+='<input type="checkbox" id="check_all" name=select_all_checkbox value="true"><input type="hidden" name=select_all_checkbox value="true">'),b+="</th>");for(var c in a.columns){var d=a.columns[c];d.visible&&(b+='<th id="'+d.key+'-header">',b+=d.href?'<a href="'+d.href+'" class="sort-link" sort_key="'+d.key+'">'+d.label+"</a>":d.label,b+='<span class="sort-arrow">'+d.extra+"</span></th>")}return b+="</tr>"},body:function(a){var b="",c=0,d=a.items.length;0==d&&(b+='<tr><td colspan="100"><em>No Items</em></td></tr>',c=1);for(var e in a.items){var f=a.items[e],g=f.encode_id;b+="<tr ",a.current_item_id==f.id&&(b+='class="current"'),b+=">",a.show_item_checkboxes&&(b+='<td style="width: 1.5em;"><input type="checkbox" name="id" value="'+g+'" id="'+g+'" class="grid-row-select-checkbox" /></td>');for(j in a.columns){var h=a.columns[j];if(h.visible){var i="";h.nowrap&&(i='style="white-space:nowrap;"');var k=f.column_config[h.label],l=k.link,m=k.value,n=k.inbound;"string"===jQuery.type(m)&&(m=m.replace(/\/\//g,"/"));var o="",p="";if(h.attach_popup&&(o="grid-"+e+"-popup",p="menubutton",""!=l&&(p+=" split"),p+=" popup"),b+="<td "+i+">",l){0!=a.operations.length&&(b+='<div id="'+o+'" class="'+p+'" style="float: left;">');var q="";q=n?"use-inbound":"use-outbound",b+='<a class="menubutton-label '+q+'" href="'+l+'" onclick="return false;">'+m+"</a>",0!=a.operations.length&&(b+="</div>")}else b+='<div id="'+o+'" class="'+p+'"><label id="'+h.label_id_prefix+g+'" for="'+g+'">'+(m||"")+"</label></div>";b+="</td>"}}b+="</tr>",c++}return b},footer:function(a){var b="";if(a.use_paging&&a.num_pages>1){var c=a.num_page_links,d=a.cur_page_num,e=a.num_pages,f=c/2,g=d-f,h=0;0>=g&&(g=1,h=f-(d-g));var j=f+h,k=d+j;e>=k?max_offset=0:(k=e,max_offset=j-(k+1-d)),0!=max_offset&&(g-=max_offset,1>g&&(g=1)),b+='<tr id="page-links-row">',a.show_item_checkboxes&&(b+="<td></td>"),b+='<td colspan="100"><span id="page-link-container">Page:',g>1&&(b+='<span class="page-link" id="page-link-1"><a href="javascript:void(0);" page_num="1" onclick="return false;">1</a></span> ...');for(var l=g;k+1>l;l++)b+=l==a.cur_page_num?'<span class="page-link inactive-link" id="page-link-'+l+'">'+l+"</span>":'<span class="page-link" id="page-link-'+l+'"><a href="javascript:void(0);" onclick="return false;" page_num="'+l+'">'+l+"</a></span>";e>k&&(b+='...<span class="page-link" id="page-link-'+e+'"><a href="javascript:void(0);" onclick="return false;" page_num="'+e+'">'+e+"</a></span>"),b+="</span>",b+='<span class="page-link" id="show-all-link-span"> | <a href="javascript:void(0);" onclick="return false;" page_num="all">Show All</a></span></td></tr>'}if(a.show_item_checkboxes){b+='<tr><input type="hidden" id="operation" name="operation" value=""><td></td><td colspan="100">For <span class="grid-selected-count"></span> selected '+a.get_class_plural+": ";for(i in a.operations){var m=a.operations[i];m.allow_multiple&&(b+='<input type="button" value="'+m.label+'" class="operation-button action-button">&nbsp;')}b+="</td></tr>"}var n=!1;for(i in a.operations)if(a.operations[i].global_operation){n=!0;break}if(n){b+='<tr><td colspan="100">';for(i in a.operations){var m=a.operations[i];m.global_operation&&(b+='<a class="action-button" href="'+m.global_operation+'">'+m.label+"</a>")}b+="</td></tr>"}return a.legend&&(b+='<tr><td colspan="100">'+a.legend+"</td></tr>"),b},message:function(a){return'<p><div class="'+a.status+'message transient-message">'+a.message+'</div><div style="clear: both"></div></p>'},grid_filters:function(a){var b=a.default_filter_dict,c=a.filters,d="none";a.advanced_search&&(d="block");var e=!1;for(var f in a.columns){var g=a.columns[f];if("advanced"==g.filterable){var h=g.key,i=c[h],j=b[h];i&&j&&i!=j&&(d="block"),e=!0}}var k="block";"block"==d&&(k="none");var l='<div id="standard-search" style="display: '+k+';"><table><tr><td style="padding: 0;"><table>';for(var f in a.columns){var g=a.columns[f];"standard"==g.filterable&&(l+=this.grid_column_filter(a,g))}l+="</table></td></tr><tr><td>",e&&(l+='<a href="" class="advanced-search-toggle">Advanced Search</a>'),l+="</td></tr></table></div>",l+='<div id="advanced-search" style="display: '+d+'; margin-top: 5px; border: 1px solid #ccc;"><table><tr><td style="text-align: left" colspan="100"><a href="" class="advanced-search-toggle">Close Advanced Search</a></td></tr>';for(var f in a.columns){var g=a.columns[f];"advanced"==g.filterable&&(l+=this.grid_column_filter(a,g))}return l+="</table></div>"},grid_column_filter:function(a,b){var c=(a.default_filter_dict,a.filters),d=b.label,e=b.key;"advanced"==b.filterable&&(d=d.toLowerCase());var f="<tr>";if("advanced"==b.filterable&&(f+='<td align="left" style="padding-left: 10px">'+d+":</td>"),f+='<td style="padding-bottom: 1px;">',b.is_text){f+='<form class="text-filter-form" column_key="'+e+'" action="'+a.url+'" method="get" >';for(k in a.columns){var g=a.columns[k],h=c[g.key];h&&"All"!=h&&(g.is_text&&(h=JSON.stringify(h)),f+='<input type="hidden" id="'+g.key+'" name="f-'+g.key+'" value="'+h+'"/>')}f+='<span id="'+e+'-filtering-criteria">';var i=c[e];if(i){var j=jQuery.type(i);if("string"==j&&"All"!=i&&(f+=this.filter_element(e,i)),"array"==j)for(var k in i){var l=i[k],m=i;m=m.slice(k),f+=this.filter_element(e,l)}}f+="</span>";var n="";if("standard"==b.filterable){n=b.label.toLowerCase();var o=n.length;20>o&&(o=20),o+=4}f+='<span class="search-box"><input class="search-box-input" id="input-'+e+'-filter" name="f-'+e+'" type="text" placeholder="'+n+'" size="'+o+'"/><button type="submit" style="background: transparent; border: none; padding: 4px; margin: 0px;"><i class="fa fa-search"></i></button></span></form>'}else{f+='<span id="'+e+'-filtering-criteria">';var p=!1;for(cf_label in a.categorical_filters[e]){var q=a.categorical_filters[e][cf_label],r="",s="";for(key in q)r=key,s=q[key];p&&(f+=" | "),p=!0;var l=c[e];f+=l&&q[e]&&l==s?'<span class="categorical-filter '+e+'-filter current-filter">'+cf_label+"</span>":'<span class="categorical-filter '+e+'-filter"><a href="javascript:void(0);" filter_key="'+r+'" filter_val="'+s+'">'+cf_label+"</a></span>"}f+="</span>"}return f+="</td></tr>"},filter_element:function(b,c){return c=a.sanitize(c),'<span class="text-filter-val">'+c+'<a href="javascript:void(0);" filter_key="'+b+'" filter_val="'+c+'"><i class="fa fa-times" style="padding-left: 5px; padding-bottom: 6px;"/></a></span>'}}});
 //# sourceMappingURL=../../../maps/mvc/grid/grid-template.js.map
\ No newline at end of file
diff --git a/static/scripts/mvc/library/library-folderrow-view.js b/static/scripts/mvc/library/library-folderrow-view.js
index 39bae1fde46..050270dd80c 100644
--- a/static/scripts/mvc/library/library-folderrow-view.js
+++ b/static/scripts/mvc/library/library-folderrow-view.js
@@ -1,2 +1,2 @@
-define(["layout/masthead","utils/utils","libs/toastr","mvc/library/library-model","mvc/library/library-dataset-view"],function(a,b,c,d,e){var f=Backbone.View.extend({lastSelectedHistory:"",events:{"click .undelete_dataset_btn":"undeleteDataset","click .undelete_folder_btn":"undeleteFolder"},options:{type:null},initialize:function(a){this.model=a,this.render(a)},render:function(a){var b=null;return"folder"===a.get("type")||"LibraryFolder"===a.get("model_class")?(this.options.type="folder",b=a.get("deleted")?this.templateRowDeletedFolder():this.templateRowFolder()):"file"===a.get("type")||"LibraryDataset"===a.get("model_class")?(this.options.type="file",b=a.get("deleted")?this.templateRowDeletedFile():this.templateRowFile()):(console.error("Unknown library item type found."),console.error(a.get("type")||a.get("model_class"))),this.setElement(b({content_item:a})),this.$el.show(),this},showDatasetDetails:function(){Galaxy.libraries.datasetView=new e.LibraryDatasetView({id:this.id})},undeleteDataset:function(a){$(".tooltip").hide();var b=this,e=$(a.target).closest("tr")[0].id,f=Galaxy.libraries.folderListView.collection.get(e);f.url=f.urlRoot+f.id+"?undelete=true",f.destroy({success:function(a,f){Galaxy.libraries.folderListView.collection.remove(e);var g=new d.Item(f);Galaxy.libraries.folderListView.collection.add(g),Galaxy.libraries.folderListView.collection.sortByNameAsc(),c.success("Dataset undeleted. Click this to see it.","",{onclick:function(){var a=b.model.get("folder_id");window.location="#folders/"+a+"/datasets/"+b.id}})},error:function(a,b){c.error("undefined"!=typeof b.responseJSON?"Dataset was not undeleted. "+b.responseJSON.err_msg:"An error occured! Dataset was not undeleted. Please try again.")}})},undeleteFolder:function(a){$(".tooltip").hide();var b=$(a.target).closest("tr")[0].id,e=Galaxy.libraries.folderListView.collection.get(b);e.url=e.urlRoot+e.id+"?undelete=true",e.destroy({success:function(a,e){Galaxy.libraries.folderListView.collection.remove(b);var f=new d.FolderAsModel(e);Galaxy.libraries.folderListView.collection.add(f),Galaxy.libraries.folderListView.collection.sortByNameAsc(),c.success("Folder undeleted.")},error:function(a,b){c.error("undefined"!=typeof b.responseJSON?"Folder was not undeleted. "+b.responseJSON.err_msg:"An error occured! Folder was not undeleted. Please try again.")}})},templateRowFolder:function(){return tmpl_array=[],tmpl_array.push('<tr class="folder_row light library-row" id="<%- content_item.id %>">'),tmpl_array.push("  <td>"),tmpl_array.push('    <span title="Folder" class="fa fa-folder-o"></span>'),tmpl_array.push("  </td>"),tmpl_array.push('  <td style="text-align: center; "><input style="margin: 0;" type="checkbox"></td>'),tmpl_array.push("  <td>"),tmpl_array.push('    <a href="#folders/<%- content_item.id %>"><%- content_item.get("name") %></a>'),tmpl_array.push("  </td>"),tmpl_array.push("  <td>folder</td>"),tmpl_array.push("  <td></td>"),tmpl_array.push('  <td><%= _.escape(content_item.get("update_time")) %></td>'),tmpl_array.push("  <td>"),tmpl_array.push('    <% if (content_item.get("can_manage")) { %><a href="#/folders/<%- content_item.id %>/permissions"><button data-toggle="tooltip" data-placement="top" class="primary-button btn-xs permissions-folder-btn show_on_hover" title="Manage permissions" style="display:none;"><span class="fa fa-group"></span></button></a><% } %>'),tmpl_array.push("  </td>"),tmpl_array.push("</tr>"),_.template(tmpl_array.join(""))},templateRowFile:function(){return tmpl_array=[],tmpl_array.push('<tr class="dataset_row light library-row" id="<%- content_item.id %>">'),tmpl_array.push("  <td>"),tmpl_array.push('    <span title="Dataset" class="fa fa-file-o"></span>'),tmpl_array.push("  </td>"),tmpl_array.push('  <td style="text-align: center; "><input style="margin: 0;" type="checkbox"></td>'),tmpl_array.push('  <td><a href="#folders/<%- content_item.get("folder_id") %>/datasets/<%- content_item.id %>" class="library-dataset"><%- content_item.get("name") %><a></td>'),tmpl_array.push('  <td><%= _.escape(content_item.get("file_ext")) %></td>'),tmpl_array.push('  <td><%= _.escape(content_item.get("file_size")) %></td>'),tmpl_array.push('  <td><%= _.escape(content_item.get("update_time")) %></td>'),tmpl_array.push("  <td>"),tmpl_array.push('    <% if (content_item.get("is_unrestricted")) { %><span data-toggle="tooltip" data-placement="top" title="Unrestricted dataset" style="color:grey;" class="fa fa-globe fa-lg"></span><% } %>'),tmpl_array.push('    <% if (content_item.get("is_private")) { %><span data-toggle="tooltip" data-placement="top" title="Private dataset" style="color:grey;" class="fa fa-key fa-lg"></span><% } %>'),tmpl_array.push('    <% if ((content_item.get("is_unrestricted") === false) && (content_item.get("is_private") === false)) { %><span data-toggle="tooltip" data-placement="top" title="Restricted dataset" style="color:grey;" class="fa fa-shield fa-lg"></span><% } %>'),tmpl_array.push('    <% if (content_item.get("can_manage")) { %><a href="#folders/<%- content_item.get("folder_id") %>/datasets/<%- content_item.id %>/permissions"><button data-toggle="tooltip" data-placement="top" class="primary-button btn-xs permissions-dataset-btn show_on_hover" title="Manage permissions" style="display:none;"><span class="fa fa-group"></span></button></a><% } %>'),tmpl_array.push("  </td>"),tmpl_array.push("</tr>"),_.template(tmpl_array.join(""))},templateRowDeletedFile:function(){return tmpl_array=[],tmpl_array.push('<tr class="active deleted_dataset library-row" id="<%- content_item.id %>">'),tmpl_array.push("  <td>"),tmpl_array.push('    <span title="Dataset" class="fa fa-file-o"></span>'),tmpl_array.push("  </td>"),tmpl_array.push("  <td></td>"),tmpl_array.push('  <td style="color:grey;"><%- content_item.get("name") %></td>'),tmpl_array.push('  <td><%= _.escape(content_item.get("file_ext")) %></td>'),tmpl_array.push('  <td><%= _.escape(content_item.get("file_size")) %></td>'),tmpl_array.push('  <td><%= _.escape(content_item.get("update_time")) %></td>'),tmpl_array.push('  <td><span data-toggle="tooltip" data-placement="top" title="Marked deleted" style="color:grey;" class="fa fa-ban fa-lg"> </span><button data-toggle="tooltip" data-placement="top" title="Undelete <%- content_item.get("name") %>" class="primary-button btn-xs undelete_dataset_btn show_on_hover" type="button" style="display:none; margin-left:1em;"><span class="fa fa-unlock"> Undelete</span></button></td>'),tmpl_array.push("</tr>"),_.template(tmpl_array.join(""))},templateRowDeletedFolder:function(){return tmpl_array=[],tmpl_array.push('<tr class="active folder_row light library-row" id="<%- content_item.id %>">'),tmpl_array.push("  <td>"),tmpl_array.push('    <span title="Folder" class="fa fa-folder-o"></span>'),tmpl_array.push("  </td>"),tmpl_array.push("  <td></td>"),tmpl_array.push('  <td style="color:grey;">'),tmpl_array.push('    <%- content_item.get("name") %>'),tmpl_array.push("  </td>"),tmpl_array.push("  <td>folder</td>"),tmpl_array.push("  <td></td>"),tmpl_array.push('  <td><%= _.escape(content_item.get("update_time")) %></td>'),tmpl_array.push('  <td><span data-toggle="tooltip" data-placement="top" title="Marked deleted" style="color:grey;" class="fa fa-ban fa-lg"> </span><button data-toggle="tooltip" data-placement="top" title="Undelete <%- content_item.get("name") %>" class="primary-button btn-xs undelete_folder_btn show_on_hover" type="button" style="display:none; margin-left:1em;"><span class="fa fa-unlock"> Undelete</span></button></td>'),tmpl_array.push("</tr>"),_.template(tmpl_array.join(""))}});return{FolderRowView:f}});
+define(["layout/masthead","utils/utils","libs/toastr","mvc/library/library-model","mvc/library/library-dataset-view"],function(a,b,c,d,e){var f=Backbone.View.extend({lastSelectedHistory:"",events:{"click .undelete_dataset_btn":"undeleteDataset","click .undelete_folder_btn":"undeleteFolder"},options:{type:null},initialize:function(a){this.model=a,this.render(a)},render:function(a){var b=null;return"folder"===a.get("type")||"LibraryFolder"===a.get("model_class")?(this.options.type="folder",b=a.get("deleted")?this.templateRowDeletedFolder():this.templateRowFolder()):"file"===a.get("type")||"LibraryDatasetDatasetAssociation"===a.get("model_class")?(this.options.type="file",b=a.get("deleted")?this.templateRowDeletedFile():this.templateRowFile()):(console.error("Unknown library item type found."),console.error(a.get("type")||a.get("model_class"))),this.setElement(b({content_item:a})),this.$el.show(),this},showDatasetDetails:function(){Galaxy.libraries.datasetView=new e.LibraryDatasetView({id:this.id})},undeleteDataset:function(a){$(".tooltip").hide();var b=this,e=$(a.target).closest("tr")[0].id,f=Galaxy.libraries.folderListView.collection.get(e);f.url=f.urlRoot+f.id+"?undelete=true",f.destroy({success:function(a,f){Galaxy.libraries.folderListView.collection.remove(e);var g=new d.Item(f);Galaxy.libraries.folderListView.collection.add(g),Galaxy.libraries.folderListView.collection.sortByNameAsc(),c.success("Dataset undeleted. Click this to see it.","",{onclick:function(){var a=b.model.get("folder_id");window.location="#folders/"+a+"/datasets/"+b.id}})},error:function(a,b){c.error("undefined"!=typeof b.responseJSON?"Dataset was not undeleted. "+b.responseJSON.err_msg:"An error occured! Dataset was not undeleted. Please try again.")}})},undeleteFolder:function(a){$(".tooltip").hide();var b=$(a.target).closest("tr")[0].id,e=Galaxy.libraries.folderListView.collection.get(b);e.url=e.urlRoot+e.id+"?undelete=true",e.destroy({success:function(a,e){Galaxy.libraries.folderListView.collection.remove(b);var f=new d.FolderAsModel(e);Galaxy.libraries.folderListView.collection.add(f),Galaxy.libraries.folderListView.collection.sortByNameAsc(),c.success("Folder undeleted.")},error:function(a,b){c.error("undefined"!=typeof b.responseJSON?"Folder was not undeleted. "+b.responseJSON.err_msg:"An error occured! Folder was not undeleted. Please try again.")}})},templateRowFolder:function(){return tmpl_array=[],tmpl_array.push('<tr class="folder_row light library-row" id="<%- content_item.id %>">'),tmpl_array.push("  <td>"),tmpl_array.push('    <span title="Folder" class="fa fa-folder-o"></span>'),tmpl_array.push("  </td>"),tmpl_array.push('  <td style="text-align: center; "><input style="margin: 0;" type="checkbox"></td>'),tmpl_array.push("  <td>"),tmpl_array.push('    <a href="#folders/<%- content_item.id %>"><%- content_item.get("name") %></a>'),tmpl_array.push("  </td>"),tmpl_array.push("  <td>folder</td>"),tmpl_array.push("  <td></td>"),tmpl_array.push('  <td><%= _.escape(content_item.get("update_time")) %></td>'),tmpl_array.push("  <td>"),tmpl_array.push('    <% if (content_item.get("can_manage")) { %><a href="#/folders/<%- content_item.id %>/permissions"><button data-toggle="tooltip" data-placement="top" class="primary-button btn-xs permissions-folder-btn show_on_hover" title="Manage permissions" style="display:none;"><span class="fa fa-group"></span></button></a><% } %>'),tmpl_array.push("  </td>"),tmpl_array.push("</tr>"),_.template(tmpl_array.join(""))},templateRowFile:function(){return tmpl_array=[],tmpl_array.push('<tr class="dataset_row light library-row" id="<%- content_item.id %>">'),tmpl_array.push("  <td>"),tmpl_array.push('    <span title="Dataset" class="fa fa-file-o"></span>'),tmpl_array.push("  </td>"),tmpl_array.push('  <td style="text-align: center; "><input style="margin: 0;" type="checkbox"></td>'),tmpl_array.push('  <td><a href="#folders/<%- content_item.get("folder_id") %>/datasets/<%- content_item.id %>" class="library-dataset"><%- content_item.get("name") %><a></td>'),tmpl_array.push('  <td><%= _.escape(content_item.get("file_ext")) %></td>'),tmpl_array.push('  <td><%= _.escape(content_item.get("file_size")) %></td>'),tmpl_array.push('  <td><%= _.escape(content_item.get("update_time")) %></td>'),tmpl_array.push("  <td>"),tmpl_array.push('    <% if (content_item.get("is_unrestricted")) { %><span data-toggle="tooltip" data-placement="top" title="Unrestricted dataset" style="color:grey;" class="fa fa-globe fa-lg"></span><% } %>'),tmpl_array.push('    <% if (content_item.get("is_private")) { %><span data-toggle="tooltip" data-placement="top" title="Private dataset" style="color:grey;" class="fa fa-key fa-lg"></span><% } %>'),tmpl_array.push('    <% if ((content_item.get("is_unrestricted") === false) && (content_item.get("is_private") === false)) { %><span data-toggle="tooltip" data-placement="top" title="Restricted dataset" style="color:grey;" class="fa fa-shield fa-lg"></span><% } %>'),tmpl_array.push('    <% if (content_item.get("can_manage")) { %><a href="#folders/<%- content_item.get("folder_id") %>/datasets/<%- content_item.id %>/permissions"><button data-toggle="tooltip" data-placement="top" class="primary-button btn-xs permissions-dataset-btn show_on_hover" title="Manage permissions" style="display:none;"><span class="fa fa-group"></span></button></a><% } %>'),tmpl_array.push("  </td>"),tmpl_array.push("</tr>"),_.template(tmpl_array.join(""))},templateRowDeletedFile:function(){return tmpl_array=[],tmpl_array.push('<tr class="active deleted_dataset library-row" id="<%- content_item.id %>">'),tmpl_array.push("  <td>"),tmpl_array.push('    <span title="Dataset" class="fa fa-file-o"></span>'),tmpl_array.push("  </td>"),tmpl_array.push("  <td></td>"),tmpl_array.push('  <td style="color:grey;"><%- content_item.get("name") %></td>'),tmpl_array.push('  <td><%= _.escape(content_item.get("file_ext")) %></td>'),tmpl_array.push('  <td><%= _.escape(content_item.get("file_size")) %></td>'),tmpl_array.push('  <td><%= _.escape(content_item.get("update_time")) %></td>'),tmpl_array.push('  <td><span data-toggle="tooltip" data-placement="top" title="Marked deleted" style="color:grey;" class="fa fa-ban fa-lg"> </span><button data-toggle="tooltip" data-placement="top" title="Undelete <%- content_item.get("name") %>" class="primary-button btn-xs undelete_dataset_btn show_on_hover" type="button" style="display:none; margin-left:1em;"><span class="fa fa-unlock"> Undelete</span></button></td>'),tmpl_array.push("</tr>"),_.template(tmpl_array.join(""))},templateRowDeletedFolder:function(){return tmpl_array=[],tmpl_array.push('<tr class="active folder_row light library-row" id="<%- content_item.id %>">'),tmpl_array.push("  <td>"),tmpl_array.push('    <span title="Folder" class="fa fa-folder-o"></span>'),tmpl_array.push("  </td>"),tmpl_array.push("  <td></td>"),tmpl_array.push('  <td style="color:grey;">'),tmpl_array.push('    <%- content_item.get("name") %>'),tmpl_array.push("  </td>"),tmpl_array.push("  <td>folder</td>"),tmpl_array.push("  <td></td>"),tmpl_array.push('  <td><%= _.escape(content_item.get("update_time")) %></td>'),tmpl_array.push('  <td><span data-toggle="tooltip" data-placement="top" title="Marked deleted" style="color:grey;" class="fa fa-ban fa-lg"> </span><button data-toggle="tooltip" data-placement="top" title="Undelete <%- content_item.get("name") %>" class="primary-button btn-xs undelete_folder_btn show_on_hover" type="button" style="display:none; margin-left:1em;"><span class="fa fa-unlock"> Undelete</span></button></td>'),tmpl_array.push("</tr>"),_.template(tmpl_array.join(""))}});return{FolderRowView:f}});
 //# sourceMappingURL=../../../maps/mvc/library/library-folderrow-view.js.map
\ No newline at end of file
diff --git a/static/scripts/mvc/tools/tools-form-base.js b/static/scripts/mvc/tools/tools-form-base.js
index 4e1cc88e77c..baec1482895 100644
--- a/static/scripts/mvc/tools/tools-form-base.js
+++ b/static/scripts/mvc/tools/tools-form-base.js
@@ -1,2 +1,2 @@
-define(["utils/utils","utils/deferred","mvc/ui/ui-misc","mvc/form/form-view","mvc/tools/tools-template","mvc/citation/citation-model","mvc/citation/citation-view"],function(a,b,c,d,e,f,g){return Backbone.View.extend({initialize:function(c){if(this.options=a.merge(c,{}),this.setElement("<div/>"),this.deferred=new b,c.inputs)this._buildForm(c);else{var d=this;this.deferred.execute(function(a){d._buildModel(a,c,!0)})}},remove:function(){var a=this;this.$el.hide(),this.deferred.execute(function(){Backbone.View.prototype.remove.call(a),console.debug("tools-form-base::remove() - Destroy view.")})},_buildForm:function(b){var c=this;this.options=a.merge(b,this.options),this.options=a.merge({icon:"fa-wrench",title:"<b>"+b.name+"</b> "+b.description+" (Galaxy Tool Version "+b.version+")",operations:this._operations(),onchange:function(){c.deferred.reset(),c.deferred.execute(function(a){c._updateModel(a)})}},this.options),this.options.customize&&this.options.customize(this.options),this.form=new d(this.options),this._footer(),this.$el.empty(),this.$el.append(this.form.$el)},_buildModel:function(b,d,e){var f=this;this.options.id=d.id,this.options.version=d.version;var g="",h={};d.job_id?g=Galaxy.root+"api/jobs/"+d.job_id+"/build_for_rerun":(g=Galaxy.root+"api/tools/"+d.id+"/build",Galaxy.params&&Galaxy.params.tool_id==d.id&&(h=$.extend({},Galaxy.params),d.version&&(h.tool_version=d.version))),a.request({type:"GET",url:g,data:h,success:function(a){f._buildForm(a.tool_model||a),!e&&f.form.message.update({status:"success",message:"Now you are using '"+f.options.name+"' version "+f.options.version+".",persistent:!1}),console.debug("tools-form::initialize() - Initial tool model ready."),console.debug(a),b.resolve()},error:function(a){var d=a&&a.err_msg||"Uncaught error.";f.$el.is(":empty")?f.$el.prepend(new c.Message({message:d,status:"danger",persistent:!0,large:!0}).$el):Galaxy.modal.show({title:"Tool request failed",body:d,buttons:{Close:function(){Galaxy.modal.hide()}}}),console.debug("tools-form::initialize() - Initial tool model request failed."),console.debug(a),b.reject()}})},_updateModel:function(b){var c=this.options.update_url||Galaxy.root+"api/tools/"+this.options.id+"/build",d=this,e=this.form,f={tool_id:this.options.id,tool_version:this.options.version,inputs:$.extend(!0,{},d.form.data.create())};e.wait(!0),console.debug("tools-form-base::_updateModel() - Sending current state (see below)."),console.debug(f),a.request({type:"POST",url:c,data:f,success:function(a){d.form.update(a.tool_model||a),d.options.update&&d.options.update(a),e.wait(!1),console.debug("tools-form-base::_updateModel() - Received new model (see below)."),console.debug(a),b.resolve()},error:function(a){console.debug("tools-form-base::_updateModel() - Refresh request failed."),console.debug(a),b.reject()}})},_operations:function(){var a=this,b=this.options,d=new c.ButtonMenu({icon:"fa-cubes",title:!b.narrow&&"Versions"||null,tooltip:"Select another tool version"});if(!b.is_workflow&&b.versions&&b.versions.length>1)for(var f in b.versions){var g=b.versions[f];g!=b.version&&d.addMenu({title:"Switch to "+g,version:g,icon:"fa-cube",onclick:function(){var c=b.id.replace(b.version,this.version),d=this.version;a.deferred.reset(),a.deferred.execute(function(b){a._buildModel(b,{id:c,version:d})})}})}else d.$el.hide();var h=new c.ButtonMenu({icon:"fa-caret-down",title:!b.narrow&&"Options"||null,tooltip:"View available options"});return b.biostar_url&&(h.addMenu({icon:"fa-question-circle",title:"Question?",tooltip:"Ask a question about this tool (Biostar)",onclick:function(){window.open(b.biostar_url+"/p/new/post/")}}),h.addMenu({icon:"fa-search",title:"Search",tooltip:"Search help for this tool (Biostar)",onclick:function(){window.open(b.biostar_url+"/local/search/page/?q="+b.name)}})),h.addMenu({icon:"fa-share",title:"Share",tooltip:"Share this tool",onclick:function(){prompt("Copy to clipboard: Ctrl+C, Enter",window.location.origin+Galaxy.root+"root?tool_id="+b.id)}}),Galaxy.user&&Galaxy.user.get("is_admin")&&h.addMenu({icon:"fa-download",title:"Download",tooltip:"Download this tool",onclick:function(){window.location.href=Galaxy.root+"api/tools/"+b.id+"/download"}}),b.requirements&&b.requirements.length>0&&h.addMenu({icon:"fa-info-circle",title:"Requirements",tooltip:"Display tool requirements",onclick:function(){this.visible?(this.visible=!1,a.form.message.update({message:""})):(this.visible=!0,a.form.message.update({persistent:!0,message:e.requirements(b),status:"info"}))}}),b.sharable_url&&h.addMenu({icon:"fa-external-link",title:"See in Tool Shed",tooltip:"Access the repository",onclick:function(){window.open(b.sharable_url)}}),{menu:h,versions:d}},_footer:function(){var a=this.options;if(""!=a.help&&this.form.$el.append(e.help(a)),a.citations){var b=$("<div/>"),c=new f.ToolCitationCollection;c.tool_id=a.id;var d=new g.CitationListView({el:b,collection:c});d.render(),c.fetch(),this.form.$el.append(b)}}})});
+define(["utils/utils","utils/deferred","mvc/ui/ui-misc","mvc/form/form-view","mvc/tools/tools-template","mvc/citation/citation-model","mvc/citation/citation-view"],function(a,b,c,d,e,f,g){return Backbone.View.extend({initialize:function(c){if(this.options=a.merge(c,{}),this.setElement("<div/>"),this.deferred=new b,c.inputs)this._buildForm(c);else{var d=this;this.deferred.execute(function(a){d._buildModel(a,c,!0)})}},remove:function(){var a=this;this.$el.hide(),this.deferred.execute(function(){Backbone.View.prototype.remove.call(a),Galaxy.emit.debug("tools-form-base::remove()","Destroy view.")})},_buildForm:function(b){var c=this;this.options=a.merge(b,this.options),this.options=a.merge({icon:"fa-wrench",title:"<b>"+b.name+"</b> "+b.description+" (Galaxy Tool Version "+b.version+")",operations:this._operations(),onchange:function(){c.deferred.reset(),c.deferred.execute(function(a){c._updateModel(a)})}},this.options),this.options.customize&&this.options.customize(this.options),this.form=new d(this.options),this._footer(),this.$el.empty(),this.$el.append(this.form.$el)},_buildModel:function(b,d,e){var f=this;this.options.id=d.id,this.options.version=d.version;var g="",h={};d.job_id?g=Galaxy.root+"api/jobs/"+d.job_id+"/build_for_rerun":(g=Galaxy.root+"api/tools/"+d.id+"/build",Galaxy.params&&Galaxy.params.tool_id==d.id&&(h=$.extend({},Galaxy.params),d.version&&(h.tool_version=d.version))),a.request({type:"GET",url:g,data:h,success:function(a){f._buildForm(a.tool_model||a),!e&&f.form.message.update({status:"success",message:"Now you are using '"+f.options.name+"' version "+f.options.version+".",persistent:!1}),Galaxy.emit.debug("tools-form-base::initialize()","Initial tool model ready.",a),b.resolve()},error:function(a){var d=a&&a.err_msg||"Uncaught error.";f.$el.is(":empty")?f.$el.prepend(new c.Message({message:d,status:"danger",persistent:!0,large:!0}).$el):Galaxy.modal.show({title:"Tool request failed",body:d,buttons:{Close:function(){Galaxy.modal.hide()}}}),Galaxy.emit.debug("tools-form::initialize()","Initial tool model request failed.",a),b.reject()}})},_updateModel:function(b){var c=this.options.update_url||Galaxy.root+"api/tools/"+this.options.id+"/build",d=this,e=this.form,f={tool_id:this.options.id,tool_version:this.options.version,inputs:$.extend(!0,{},d.form.data.create())};e.wait(!0),Galaxy.emit.debug("tools-form-base::_updateModel()","Sending current state.",f),a.request({type:"POST",url:c,data:f,success:function(a){d.form.update(a.tool_model||a),d.options.update&&d.options.update(a),e.wait(!1),Galaxy.emit.debug("tools-form-base::_updateModel()","Received new model.",a),b.resolve()},error:function(a){Galaxy.emit.debug("tools-form-base::_updateModel()","Refresh request failed.",a),b.reject()}})},_operations:function(){var a=this,b=this.options,d=new c.ButtonMenu({icon:"fa-cubes",title:!b.narrow&&"Versions"||null,tooltip:"Select another tool version"});if(!b.is_workflow&&b.versions&&b.versions.length>1)for(var f in b.versions){var g=b.versions[f];g!=b.version&&d.addMenu({title:"Switch to "+g,version:g,icon:"fa-cube",onclick:function(){var c=b.id.replace(b.version,this.version),d=this.version;a.deferred.reset(),a.deferred.execute(function(b){a._buildModel(b,{id:c,version:d})})}})}else d.$el.hide();var h=new c.ButtonMenu({icon:"fa-caret-down",title:!b.narrow&&"Options"||null,tooltip:"View available options"});return b.biostar_url&&(h.addMenu({icon:"fa-question-circle",title:"Question?",tooltip:"Ask a question about this tool (Biostar)",onclick:function(){window.open(b.biostar_url+"/p/new/post/")}}),h.addMenu({icon:"fa-search",title:"Search",tooltip:"Search help for this tool (Biostar)",onclick:function(){window.open(b.biostar_url+"/local/search/page/?q="+b.name)}})),h.addMenu({icon:"fa-share",title:"Share",tooltip:"Share this tool",onclick:function(){prompt("Copy to clipboard: Ctrl+C, Enter",window.location.origin+Galaxy.root+"root?tool_id="+b.id)}}),Galaxy.user&&Galaxy.user.get("is_admin")&&h.addMenu({icon:"fa-download",title:"Download",tooltip:"Download this tool",onclick:function(){window.location.href=Galaxy.root+"api/tools/"+b.id+"/download"}}),b.requirements&&b.requirements.length>0&&h.addMenu({icon:"fa-info-circle",title:"Requirements",tooltip:"Display tool requirements",onclick:function(){this.visible?(this.visible=!1,a.form.message.update({message:""})):(this.visible=!0,a.form.message.update({persistent:!0,message:e.requirements(b),status:"info"}))}}),b.sharable_url&&h.addMenu({icon:"fa-external-link",title:"See in Tool Shed",tooltip:"Access the repository",onclick:function(){window.open(b.sharable_url)}}),{menu:h,versions:d}},_footer:function(){var a=this.options;if(""!=a.help&&this.form.$el.append(e.help(a)),a.citations){var b=$("<div/>"),c=new f.ToolCitationCollection;c.tool_id=a.id;var d=new g.CitationListView({el:b,collection:c});d.render(),c.fetch(),this.form.$el.append(b)}}})});
 //# sourceMappingURL=../../../maps/mvc/tools/tools-form-base.js.map
\ No newline at end of file
diff --git a/static/scripts/mvc/tools/tools-form-workflow.js b/static/scripts/mvc/tools/tools-form-workflow.js
index e19f607f183..199330a8041 100644
--- a/static/scripts/mvc/tools/tools-form-workflow.js
+++ b/static/scripts/mvc/tools/tools-form-workflow.js
@@ -1,2 +1,2 @@
-define(["utils/utils","mvc/tools/tools-form-base"],function(a,b){var c=b.extend({initialize:function(c){var d=this;return this.node=c.node,this.node?(this.post_job_actions=this.node.post_job_actions||{},c=a.merge(c,{text_enable:"Set in Advance",text_disable:"Set at Runtime",is_workflow:!0,narrow:!0,initial_errors:!0,cls:"ui-portlet-narrow",update_url:galaxy_config.root+"api/workflows/build_module",update:function(a){d.node.update_field_data(a),d.form.errors(a&&a.tool_model)}}),a.deepeach(c.inputs,function(a){a.type&&-1==["data","data_collection"].indexOf(a.type)&&(a.collapsible=!0,a.collapsible_value={__class__:"RuntimeValue"})}),a.deepeach(c.inputs,function(a){a.type&&"conditional"==a.type&&(a.test_param.collapsible=!1)}),this._makeSections(c),void b.prototype.initialize.call(this,c)):void console.debug("FAILED - tools-form-workflow:initialize() - Node not found in workflow.")},_makeSections:function(b){var c=b.inputs,d=b.datatypes;c[a.uid()]={label:"Annotation / Notes",name:"annotation",type:"text",area:!0,help:"Add an annotation or note for this step. It will be shown with the workflow.",value:this.node.annotation};var e=this.node.output_terminals&&Object.keys(this.node.output_terminals)[0];if(e){c[a.uid()]={name:"pja__"+e+"__EmailAction",label:"Email notification",type:"boolean",value:String(Boolean(this.post_job_actions["EmailAction"+e])),ignore:"false",help:"An email notification will be send when the job has completed.",payload:{host:window.location.host}},c[a.uid()]={name:"pja__"+e+"__DeleteIntermediatesAction",label:"Output cleanup",type:"boolean",value:String(Boolean(this.post_job_actions["DeleteIntermediatesAction"+e])),ignore:"false",help:"Delete intermediate outputs if they are not used as input for another job."};for(var f in this.node.output_terminals)c[a.uid()]=this._makeSection(f,d)}},_makeSection:function(a,b){function c(b,d){d=d||[],d.push(b);for(var e in b.inputs){var f=b.inputs[e];if(f.action){if(f.name="pja__"+a+"__"+f.action,f.pja_arg&&(f.name+="__"+f.pja_arg),f.payload)for(var h in f.payload){var i=f.payload[h];f.payload[f.name+"__"+h]=i,delete i}var j=g.post_job_actions[f.action+a];if(j){for(var k in d)d[k].expanded=!0;f.value=f.pja_arg?j.action_arguments&&j.action_arguments[f.pja_arg]||f.value:"true"}}f.inputs&&c(f,d.slice(0))}}var d=[],e=[];for(key in b)d.push({0:b[key],1:b[key]});for(key in this.node.input_terminals)e.push(this.node.input_terminals[key].name);d.sort(function(a,b){return a.label>b.label?1:a.label<b.label?-1:0}),d.unshift({0:"Sequences",1:"Sequences"}),d.unshift({0:"Roadmaps",1:"Roadmaps"}),d.unshift({0:"Leave unchanged",1:"__empty__"});var f={title:"Add Actions: '"+a+"'",type:"section",flat:!0,inputs:[{action:"RenameDatasetAction",pja_arg:"newname",label:"Rename dataset",type:"text",value:"",ignore:"",help:'This action will rename the output dataset. Click <a href="https://wiki.galaxyproject.org/Learn/AdvancedWorkflow/Variables">here</a> for more information. Valid inputs are: <strong>'+e.join(", ")+"</strong>."},{action:"ChangeDatatypeAction",pja_arg:"newtype",label:"Change datatype",type:"select",ignore:"__empty__",value:"__empty__",options:d,help:"This action will change the datatype of the output to the indicated value."},{action:"TagDatasetAction",pja_arg:"tags",label:"Tags",type:"text",value:"",ignore:"",help:"This action will set tags for the dataset."},{title:"Assign columns",type:"section",flat:!0,inputs:[{action:"ColumnSetAction",pja_arg:"chromCol",label:"Chrom column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"startCol",label:"Start column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"endCol",label:"End column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"strandCol",label:"Strand column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"nameCol",label:"Name column",type:"integer",value:"",ignore:""}],help:"This action will set column assignments in the output dataset. Blank fields are ignored."}]},g=this;return c(f),f}});return{View:c}});
+define(["utils/utils","mvc/tools/tools-form-base"],function(a,b){var c=b.extend({initialize:function(c){var d=this;return this.node=c.node,this.node?(this.post_job_actions=this.node.post_job_actions||{},c=a.merge(c,{text_enable:"Set in Advance",text_disable:"Set at Runtime",is_workflow:!0,narrow:!0,initial_errors:!0,cls:"ui-portlet-narrow",update_url:galaxy_config.root+"api/workflows/build_module",update:function(a){d.node.update_field_data(a),d.form.errors(a&&a.tool_model)}}),a.deepeach(c.inputs,function(a){a.type&&-1==["data","data_collection"].indexOf(a.type)&&(a.collapsible=!0,a.collapsible_value={__class__:"RuntimeValue"})}),a.deepeach(c.inputs,function(a){a.type&&"conditional"==a.type&&(a.test_param.collapsible=!1)}),this._makeSections(c),void b.prototype.initialize.call(this,c)):void Galaxy.emit.debug("tools-form-workflow::initialize()","Node not found in workflow.")},_makeSections:function(b){var c=b.inputs,d=b.datatypes;c[a.uid()]={label:"Annotation / Notes",name:"annotation",type:"text",area:!0,help:"Add an annotation or note for this step. It will be shown with the workflow.",value:this.node.annotation};var e=this.node.output_terminals&&Object.keys(this.node.output_terminals)[0];if(e){c[a.uid()]={name:"pja__"+e+"__EmailAction",label:"Email notification",type:"boolean",value:String(Boolean(this.post_job_actions["EmailAction"+e])),ignore:"false",help:"An email notification will be send when the job has completed.",payload:{host:window.location.host}},c[a.uid()]={name:"pja__"+e+"__DeleteIntermediatesAction",label:"Output cleanup",type:"boolean",value:String(Boolean(this.post_job_actions["DeleteIntermediatesAction"+e])),ignore:"false",help:"Delete intermediate outputs if they are not used as input for another job."};for(var f in this.node.output_terminals)c[a.uid()]=this._makeSection(f,d)}},_makeSection:function(a,b){function c(b,d){d=d||[],d.push(b);for(var e in b.inputs){var f=b.inputs[e];if(f.action){if(f.name="pja__"+a+"__"+f.action,f.pja_arg&&(f.name+="__"+f.pja_arg),f.payload)for(var h in f.payload){var i=f.payload[h];f.payload[f.name+"__"+h]=i,delete i}var j=g.post_job_actions[f.action+a];if(j){for(var k in d)d[k].expanded=!0;f.value=f.pja_arg?j.action_arguments&&j.action_arguments[f.pja_arg]||f.value:"true"}}f.inputs&&c(f,d.slice(0))}}var d=[],e=[];for(key in b)d.push({0:b[key],1:b[key]});for(key in this.node.input_terminals)e.push(this.node.input_terminals[key].name);d.sort(function(a,b){return a.label>b.label?1:a.label<b.label?-1:0}),d.unshift({0:"Sequences",1:"Sequences"}),d.unshift({0:"Roadmaps",1:"Roadmaps"}),d.unshift({0:"Leave unchanged",1:"__empty__"});var f={title:"Add Actions: '"+a+"'",type:"section",flat:!0,inputs:[{action:"RenameDatasetAction",pja_arg:"newname",label:"Rename dataset",type:"text",value:"",ignore:"",help:'This action will rename the output dataset. Click <a href="https://wiki.galaxyproject.org/Learn/AdvancedWorkflow/Variables">here</a> for more information. Valid inputs are: <strong>'+e.join(", ")+"</strong>."},{action:"ChangeDatatypeAction",pja_arg:"newtype",label:"Change datatype",type:"select",ignore:"__empty__",value:"__empty__",options:d,help:"This action will change the datatype of the output to the indicated value."},{action:"TagDatasetAction",pja_arg:"tags",label:"Tags",type:"text",value:"",ignore:"",help:"This action will set tags for the dataset."},{title:"Assign columns",type:"section",flat:!0,inputs:[{action:"ColumnSetAction",pja_arg:"chromCol",label:"Chrom column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"startCol",label:"Start column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"endCol",label:"End column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"strandCol",label:"Strand column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"nameCol",label:"Name column",type:"integer",value:"",ignore:""}],help:"This action will set column assignments in the output dataset. Blank fields are ignored."}]},g=this;return c(f),f}});return{View:c}});
 //# sourceMappingURL=../../../maps/mvc/tools/tools-form-workflow.js.map
\ No newline at end of file
diff --git a/static/scripts/mvc/tools/tools-jobs.js b/static/scripts/mvc/tools/tools-jobs.js
index a368e89d36d..7df60cb66b0 100644
--- a/static/scripts/mvc/tools/tools-jobs.js
+++ b/static/scripts/mvc/tools/tools-jobs.js
@@ -1,2 +1,2 @@
-define(["utils/utils","mvc/tools/tools-template"],function(a,b){return{submit:function(c,d,e){var f=this,g={tool_id:d.id,tool_version:d.version,inputs:c.data.create()};return c.trigger("reset"),this._validation(c,g)?(console.debug(g),void a.request({type:"POST",url:galaxy_config.root+"api/tools",data:g,success:function(a){e&&e(),c.$el.replaceWith(b.success(a)),f._refreshHdas()},error:function(a){if(e&&e(),console.debug(a),a&&a.err_data){var d=c.data.matchResponse(a.err_data);for(var f in d){c.highlight(f,d[f]);break}}else c.modal.show({title:"Job submission failed",body:a&&a.err_msg||b.error(g),buttons:{Close:function(){c.modal.hide()}}})}})):(console.debug("tools-jobs::submit - Submission canceled. Validation failed."),void(e&&e()))},_validation:function(a,b){var c=b.inputs,d=-1,e=null;for(var f in c){var g=c[f],h=a.data.match(f),i=a.field_list[h],j=a.input_list[h];if(h&&j&&i){if(!j.optional&&null==g)return a.highlight(h),!1;if(g&&g.batch){var k=g.values.length,l=null;if(k>0&&(l=g.values[0]&&g.values[0].src),l)if(null===e)e=l;else if(e!==l)return a.highlight(h,"Please select either dataset or dataset list fields for all batch mode fields."),!1;if(-1===d)d=k;else if(d!==k)return a.highlight(h,"Please make sure that you select the same number of inputs for all batch mode fields. This field contains <b>"+k+"</b> selection(s) while a previous field contains <b>"+d+"</b>."),!1}}else console.debug("tools-jobs::_validation - Retrieving input objects failed.")}return!0},_refreshHdas:function(a,b){parent.Galaxy&&parent.Galaxy.currHistoryPanel&&parent.Galaxy.currHistoryPanel.refreshContents(a,b)}}});
+define(["utils/utils","mvc/tools/tools-template"],function(a,b){return{submit:function(c,d,e){var f=this,g={tool_id:d.id,tool_version:d.version,inputs:c.data.create()};return c.trigger("reset"),this._validation(c,g)?(Galaxy.emit.debug("tools-jobs::submit()","Validation complete.",g),void a.request({type:"POST",url:galaxy_config.root+"api/tools",data:g,success:function(a){e&&e(),c.$el.replaceWith(b.success(a)),f._refreshHdas()},error:function(a){if(e&&e(),Galaxy.emit.debug("tools-jobs::submit","Submission failed.",a),a&&a.err_data){var d=c.data.matchResponse(a.err_data);for(var f in d){c.highlight(f,d[f]);break}}else c.modal.show({title:"Job submission failed",body:a&&a.err_msg||b.error(g),buttons:{Close:function(){c.modal.hide()}}})}})):(Galaxy.emit.debug("tools-jobs::submit()","Submission canceled. Validation failed."),void(e&&e()))},_validation:function(a,b){var c=b.inputs,d=-1,e=null;for(var f in c){var g=c[f],h=a.data.match(f),i=a.field_list[h],j=a.input_list[h];if(h&&j&&i){if(!j.optional&&null==g)return a.highlight(h),!1;if(g&&g.batch){var k=g.values.length,l=null;if(k>0&&(l=g.values[0]&&g.values[0].src),l)if(null===e)e=l;else if(e!==l)return a.highlight(h,"Please select either dataset or dataset list fields for all batch mode fields."),!1;if(-1===d)d=k;else if(d!==k)return a.highlight(h,"Please make sure that you select the same number of inputs for all batch mode fields. This field contains <b>"+k+"</b> selection(s) while a previous field contains <b>"+d+"</b>."),!1}}else Galaxy.emit.debug("tools-jobs::_validation()","Retrieving input objects failed.")}return!0},_refreshHdas:function(a,b){parent.Galaxy&&parent.Galaxy.currHistoryPanel&&parent.Galaxy.currHistoryPanel.refreshContents(a,b)}}});
 //# sourceMappingURL=../../../maps/mvc/tools/tools-jobs.js.map
\ No newline at end of file
diff --git a/static/scripts/mvc/ui/ui-select-default.js b/static/scripts/mvc/ui/ui-select-default.js
index 540908329d3..67a6722fa99 100644
--- a/static/scripts/mvc/ui/ui-select-default.js
+++ b/static/scripts/mvc/ui/ui-select-default.js
@@ -1,2 +1,2 @@
-define(["utils/utils","mvc/ui/ui-buttons"],function(a,b){var c=Backbone.View.extend({optionsDefault:{id:a.uid(),cls:"ui-select",error_text:"No options available",empty_text:"Nothing selected",visible:!0,wait:!1,multiple:!1,searchable:!0,optional:!1},initialize:function(c){var d=this;this.options=a.merge(c,this.optionsDefault),this.setElement(this._template(this.options)),this.$select=this.$el.find(".select"),this.$icon=this.$el.find(".icon"),this.$button=this.$el.find(".button"),this.options.multiple&&(this.options.searchable&&(this.all_button=new b.ButtonCheck({onclick:function(){var a=[];0!==d.all_button.value()&&(a=d._availableOptions()),d.value(a),d.trigger("change")}}),this.$el.prepend(this.all_button.$el)),this.$el.addClass("ui-select-multiple"),this.$select.prop("multiple",!0),this.$button.remove()),this.update(this.options.data),void 0!==this.options.value&&this.value(this.options.value),this.options.visible||this.hide(),this.options.wait?this.wait():this.show(),this.$select.on("change",function(){d.trigger("change")}),this.on("change",function(){d.options.onchange&&d.options.onchange(this.value())})},value:function(a){void 0!==a&&(null===a&&(a="__null__"),(this.exists(a)||this.options.multiple)&&(this.$select.val(a),this.$select.select2&&this.$select.select2("val",a)));var b=this._getValue();return this.all_button&&this.all_button.value($.isArray(b)&&b.length||0,this._size()),b},first:function(){var a=this.$select.find("option").first();return a.length>0?a.val():null},text:function(){return this.$select.find("option:selected").text()},show:function(){this.unwait(),this.$select.show(),this.$el.show()},hide:function(){this.$el.hide()},wait:function(){this.$icon.removeClass(),this.$icon.addClass("fa fa-spinner fa-spin")},unwait:function(){this.$icon.removeClass(),this.$icon.addClass("fa fa-caret-down")},disabled:function(){return this.$select.is(":disabled")},enable:function(){this.$select.prop("disabled",!1)},disable:function(){this.$select.prop("disabled",!0)},update:function(a){var b=this._getValue();this.$select.find("option").remove(),!this.options.multiple&&this.options.optional&&this.$select.append(this._templateOption({value:"__null__",label:this.options.empty_text}));for(var c in a)this.$select.append(this._templateOption(a[c]));0==this._size()?(this.disable(),this.$select.append(this._templateOption({value:"__null__",label:this.options.error_text}))):this.enable(),this.options.searchable&&(this.$select.select2("destroy"),this.$select.select2(),this.$(".select2-container .select2-search input").off("blur")),this.value(b),null!==this._getValue()||this.options.multiple&&this.options.optional||this.value(this.first())},setOnChange:function(a){this.options.onchange=a},exists:function(a){return this.$select.find('option[value="'+a+'"]').length>0},_getValue:function(){var b=this.$select.val();return a.validate(b)?b:null},_availableOptions:function(){var a=[];return this.$select.find("option").each(function(b,c){a.push($(c).attr("value"))}),a},_size:function(){return this.$select.find("option").length},_templateOption:function(a){return'<option value="'+a.value+'">'+a.label+"</option>"},_template:function(a){return'<div id="'+a.id+'" class="'+a.cls+'"><select id="'+a.id+'_select" class="select"/><div class="button"><i class="icon"/></div></div>'}});return{View:c}});
+define(["utils/utils","mvc/ui/ui-buttons"],function(a,b){var c=Backbone.View.extend({optionsDefault:{id:a.uid(),cls:"ui-select",error_text:"No options available",empty_text:"Nothing selected",visible:!0,wait:!1,multiple:!1,searchable:!0,optional:!1},initialize:function(c){var d=this;this.options=a.merge(c,this.optionsDefault),this.setElement(this._template(this.options)),this.$select=this.$el.find(".select"),this.$icon_dropdown=this.$el.find(".icon-dropdown");var e=null;this.$(".icon-resize").on("mousedown",function(a){var b=a.pageY,c=d.$select.height();e=e||c,$("#dd-helper").show().on("mousemove",function(a){d.$select.height(Math.max(c+(a.pageY-b),e))}).on("mouseup mouseleave",function(){$("#dd-helper").hide().off()})}),this.options.multiple&&(this.options.searchable?(this.all_button=new b.ButtonCheck({onclick:function(){var a=[];0!==d.all_button.value()&&(a=d._availableOptions()),d.value(a),d.trigger("change")}}),this.$el.prepend(this.all_button.$el)):this.$el.addClass("ui-select-multiple"),this.$select.prop("multiple",!0),this.$icon_dropdown.remove()),this.update(this.options.data),void 0!==this.options.value&&this.value(this.options.value),this.options.visible||this.hide(),this.options.wait?this.wait():this.show(),this.$select.on("change",function(){d.trigger("change")}),this.on("change",function(){d.options.onchange&&d.options.onchange(this.value())})},value:function(a){void 0!==a&&(null===a&&(a="__null__"),(this.exists(a)||this.options.multiple)&&(this.$select.val(a),this.$select.select2&&this.$select.select2("val",a)));var b=this._getValue();return this.all_button&&this.all_button.value($.isArray(b)&&b.length||0,this._size()),b},first:function(){var a=this.$select.find("option").first();return a.length>0?a.val():null},text:function(){return this.$select.find("option:selected").text()},show:function(){this.unwait(),this.$select.show(),this.$el.show()},hide:function(){this.$el.hide()},wait:function(){this.$icon_dropdown.removeClass(),this.$icon_dropdown.addClass("icon-dropdown fa fa-spinner fa-spin")},unwait:function(){this.$icon_dropdown.removeClass(),this.$icon_dropdown.addClass("icon-dropdown fa fa-caret-down")},disabled:function(){return this.$select.is(":disabled")},enable:function(){this.$select.prop("disabled",!1)},disable:function(){this.$select.prop("disabled",!0)},update:function(a){var b=this._getValue();this.$select.find("option").remove(),!this.options.multiple&&this.options.optional&&this.$select.append(this._templateOption({value:"__null__",label:this.options.empty_text}));for(var c in a)this.$select.append(this._templateOption(a[c]));0==this._size()?(this.disable(),this.$select.append(this._templateOption({value:"__null__",label:this.options.error_text}))):this.enable(),this.options.searchable&&(this.$select.select2("destroy"),this.$select.select2({closeOnSelect:!this.options.multiple}),this.$(".select2-container .select2-search input").off("blur")),this.value(b),null!==this._getValue()||this.options.multiple&&this.options.optional||this.value(this.first())},setOnChange:function(a){this.options.onchange=a},exists:function(a){return this.$select.find('option[value="'+a+'"]').length>0},_getValue:function(){var b=this.$select.val();return a.validate(b)?b:null},_availableOptions:function(){var a=[];return this.$select.find("option").each(function(b,c){a.push($(c).attr("value"))}),a},_size:function(){return this.$select.find("option").length},_templateOption:function(a){return'<option value="'+a.value+'">'+a.label+"</option>"},_template:function(a){return'<div id="'+a.id+'" class="'+a.cls+'"><select id="'+a.id+'_select" class="select"/><div class="icon-dropdown"/><div class="icon-resize"><i class="fa fa-angle-double-right fa-rotate-45"/></div></div>'}});return{View:c}});
 //# sourceMappingURL=../../../maps/mvc/ui/ui-select-default.js.map
\ No newline at end of file
diff --git a/static/scripts/mvc/upload/upload-button.js b/static/scripts/mvc/upload/upload-button.js
index 7b73a5ec2a9..fcd425168d7 100644
--- a/static/scripts/mvc/upload/upload-button.js
+++ b/static/scripts/mvc/upload/upload-button.js
@@ -1,2 +1,2 @@
-define([],function(){var a=Backbone.Model.extend({defaults:{icon:"fa-upload",tooltip:"Download from URL or upload files from disk",label:"Load Data",percentage:0,status:""}}),b=Backbone.View.extend({model:null,initialize:function(a){var b=this,c=a.model;this.setElement(this._template()),this.$el.on("click",function(b){a.onclick(b)}),this.$el.tooltip({title:c.get("tooltip"),placement:"bottom"}),c.on("change:percentage",function(){b._percentage(c.get("percentage"))}),c.on("change:status",function(){b._status(c.get("status"))});var b=this;$(window).on("beforeunload",function(){var b="";return a.onunload&&(b=a.onunload()),""!=b?b:void 0})},_status:function(a){var b=this.$el.find(".progress-bar");b.removeClass(),b.addClass("progress-bar"),b.addClass("progress-bar-notransition"),""!=a&&b.addClass("progress-bar-"+a)},_percentage:function(a){var b=this.$el.find(".progress-bar");b.css({width:a+"%"})},_template:function(){return'<div class="upload-button"><div class="progress"><div class="progress-bar"></div></div><div id="label" class="label"><a class="panel-header-button" href="javascript:void(0)"><span class="fa fa-upload"></span></a></div></div>'}});return{Model:a,View:b}});
+define([],function(){var a=Backbone.Model.extend({defaults:{icon:"fa-upload",tooltip:"Download from URL or upload files from disk",label:"Load Data",percentage:0,status:""}}),b=Backbone.View.extend({model:null,initialize:function(a){var b=this,c=a.model;this.setElement(this._template()),this.$el.on("click",function(b){a.onclick(b)}),this.$el.tooltip({title:c.get("tooltip"),placement:"bottom"}),c.on("change:percentage",function(){b._percentage(c.get("percentage"))}),c.on("change:status",function(){b._status(c.get("status"))});var b=this;$(window).on("beforeunload",function(){var b="";return a.onunload&&(b=a.onunload()),""!=b?b:void 0})},_status:function(a){var b=this.$el.find(".progress-bar");b.removeClass(),b.addClass("progress-bar"),b.addClass("progress-bar-notransition"),""!=a&&b.addClass("progress-bar-"+a)},_percentage:function(a){var b=this.$el.find(".progress-bar");b.css({width:a+"%"})},_template:function(){return'<div class="upload-button"><div class="progress"><div class="progress-bar"/><a class="panel-header-button" href="javascript:void(0)"><span class="fa fa-upload"/></a></div></div>'}});return{Model:a,View:b}});
 //# sourceMappingURL=../../../maps/mvc/upload/upload-button.js.map
\ No newline at end of file
diff --git a/static/scripts/utils/deferred.js b/static/scripts/utils/deferred.js
index 0e938c116b2..86e26951564 100644
--- a/static/scripts/utils/deferred.js
+++ b/static/scripts/utils/deferred.js
@@ -1,2 +1,2 @@
-define(["utils/utils"],function(a){return Backbone.Model.extend({initialize:function(){this.active={},this.last=null},execute:function(b){var c=this,d=a.uid(),e=b.length>0;this.active[d]=!0;var f=$.Deferred();f.promise().always(function(){delete c.active[d],e&&console.debug("Deferred::execute() - "+this.state()+" "+d)}),$.when(this.last).always(function(){c.active[d]?(e&&console.debug("Deferred::execute() - running "+d),b(f),!e&&f.resolve()):f.reject()}),this.last=f.promise()},reset:function(){console.debug("Deferred::execute() - reset");for(var a in this.active)this.active[a]=!1},ready:function(){return $.isEmptyObject(this.active)}})});
+define(["utils/utils"],function(a){return Backbone.Model.extend({initialize:function(){this.active={},this.last=null},execute:function(b){var c=this,d=a.uid(),e=b.length>0;this.active[d]=!0;var f=$.Deferred();f.promise().always(function(){delete c.active[d],e&&Galaxy.emit.debug("deferred::execute()",this.state().charAt(0).toUpperCase()+this.state().slice(1)+" "+d)}),$.when(this.last).always(function(){c.active[d]?(e&&Galaxy.emit.debug("deferred::execute()","Running "+d),b(f),!e&&f.resolve()):f.reject()}),this.last=f.promise()},reset:function(){Galaxy.emit.debug("deferred::execute()","Reset");for(var a in this.active)this.active[a]=!1},ready:function(){return $.isEmptyObject(this.active)}})});
 //# sourceMappingURL=../../maps/utils/deferred.js.map
\ No newline at end of file
diff --git a/static/scripts/utils/uploadbox.js b/static/scripts/utils/uploadbox.js
index 4efe383038e..2e0d7a163e9 100755
--- a/static/scripts/utils/uploadbox.js
+++ b/static/scripts/utils/uploadbox.js
@@ -1,2 +1,2 @@
-!function(a){jQuery.event.props.push("dataTransfer"),a.uploadpost=function(b){var c=a.extend({},{data:{},success:function(){},error:function(){},progress:function(){},url:null,maxfilesize:2048,error_filesize:"File exceeds 2GB. Please use an FTP client.",error_default:"Please make sure the file is available.",error_server:"Upload request failed.",error_login:"Uploads require you to log in."},b),d=c.data;if(d.error_message)return void c.error(d.error_message);var e=new FormData;for(var f in d.payload)e.append(f,d.payload[f]);var g=0;for(var f in d.files){var h=d.files[f];e.append(h.name,h.file,h.file.name),g+=h.file.size}return g>1048576*c.maxfilesize?void c.error(c.error_filesize):(xhr=new XMLHttpRequest,xhr.open("POST",c.url,!0),xhr.setRequestHeader("Accept","application/json"),xhr.setRequestHeader("Cache-Control","no-cache"),xhr.setRequestHeader("X-Requested-With","XMLHttpRequest"),xhr.onreadystatechange=function(){if(xhr.readyState==xhr.DONE){var a=null;if(xhr.responseText)try{a=jQuery.parseJSON(xhr.responseText)}catch(b){a=xhr.responseText}if(xhr.status<200||xhr.status>299){var d=xhr.statusText;403==xhr.status?d=c.error_login:0==xhr.status?d=c.error_server:d||(d=c.error_default),c.error(d+" ("+xhr.status+")")}else c.success(a)}},xhr.upload.addEventListener("progress",function(a){a.lengthComputable&&c.progress(Math.round(100*a.loaded/a.total))},!1),console.debug("uploadbox::uploadpost() - Posting following data:"),console.debug(c),void xhr.send(e))},a.fn.uploadinput=function(b){var c=this,d=a.extend({},{ondragover:function(){},ondragleave:function(){},onchange:function(){},multiple:!1},b),e=a('<input type="file" style="display: none" '+(d.multiple&&"multiple"||"")+"/>");return c.append(e).change(function(b){d.onchange(b.target.files),a(this).val("")}),c.on("drop",function(a){d.ondragleave(a),a.dataTransfer&&(d.onchange(a.dataTransfer.files),a.preventDefault())}),c.on("dragover",function(a){a.preventDefault(),d.ondragover(a)}),c.on("dragleave",function(a){a.stopPropagation(),d.ondragleave(a)}),{dialog:function(){e.trigger("click")}}},a.fn.uploadbox=function(b){function c(a){if(a&&a.length&&!p){for(var b=n,c=0;c<a.length;c++){var d=String(n++);m[d]=a[c],l.announce(d,m[d]),o++}return b}}function d(a){m[a]&&(delete m[a],o--)}function e(){if(0==o||q)return q=!1,p=!1,void l.complete();p=!0;var b=-1;for(var c in m){b=c;break}m[b];d(b),a.uploadpost({url:l.url,data:l.initialize(b),success:function(a){l.success(b,a),e()},error:function(a){l.error(b,a),e()},progress:function(a){l.progress(b,a)}})}function f(){r.dialog()}function g(a){for(a in m)d(a)}function h(){p||(p=!0,e())}function i(){q=!0}function j(b){return l=a.extend({},l,b)}function k(){return window.File&&window.FormData&&window.XMLHttpRequest&&window.FileList}var l=a.extend({},{dragover:function(){},dragleave:function(){},announce:function(){},initialize:function(){},progress:function(){},success:function(){},error:function(a,b){alert(b)},complete:function(){}},b),m={},n=0,o=0,p=!1,q=!1,r=a(this).uploadinput({multiple:!0,onchange:function(a){c(a)},ondragover:b.ondragover,ondragleave:b.ondragleave});return{select:f,add:c,remove:d,start:h,stop:i,reset:g,configure:j,compatible:k}}}(jQuery);
+!function(a){jQuery.event.props.push("dataTransfer"),a.uploadpost=function(b){var c=a.extend({},{data:{},success:function(){},error:function(){},progress:function(){},url:null,maxfilesize:2048,error_filesize:"File exceeds 2GB. Please use an FTP client.",error_default:"Please make sure the file is available.",error_server:"Upload request failed.",error_login:"Uploads require you to log in."},b),d=c.data;if(d.error_message)return void c.error(d.error_message);var e=new FormData;for(var f in d.payload)e.append(f,d.payload[f]);var g=0;for(var f in d.files){var h=d.files[f];e.append(h.name,h.file,h.file.name),g+=h.file.size}return g>1048576*c.maxfilesize?void c.error(c.error_filesize):(xhr=new XMLHttpRequest,xhr.open("POST",c.url,!0),xhr.setRequestHeader("Accept","application/json"),xhr.setRequestHeader("Cache-Control","no-cache"),xhr.setRequestHeader("X-Requested-With","XMLHttpRequest"),xhr.onreadystatechange=function(){if(xhr.readyState==xhr.DONE){var a=null;if(xhr.responseText)try{a=jQuery.parseJSON(xhr.responseText)}catch(b){a=xhr.responseText}if(xhr.status<200||xhr.status>299){var d=xhr.statusText;403==xhr.status?d=c.error_login:0==xhr.status?d=c.error_server:d||(d=c.error_default),c.error(d+" ("+xhr.status+")")}else c.success(a)}},xhr.upload.addEventListener("progress",function(a){a.lengthComputable&&c.progress(Math.round(100*a.loaded/a.total))},!1),Galaxy.emit.debug("uploadbox::uploadpost()","Posting following data.",c),void xhr.send(e))},a.fn.uploadinput=function(b){var c=this,d=a.extend({},{ondragover:function(){},ondragleave:function(){},onchange:function(){},multiple:!1},b),e=a('<input type="file" style="display: none" '+(d.multiple&&"multiple"||"")+"/>");return c.append(e).change(function(b){d.onchange(b.target.files),a(this).val("")}),c.on("drop",function(a){d.ondragleave(a),a.dataTransfer&&(d.onchange(a.dataTransfer.files),a.preventDefault())}),c.on("dragover",function(a){a.preventDefault(),d.ondragover(a)}),c.on("dragleave",function(a){a.stopPropagation(),d.ondragleave(a)}),{dialog:function(){e.trigger("click")}}},a.fn.uploadbox=function(b){function c(a){if(a&&a.length&&!p){for(var b=n,c=0;c<a.length;c++){var d=String(n++);m[d]=a[c],l.announce(d,m[d]),o++}return b}}function d(a){m[a]&&(delete m[a],o--)}function e(){if(0==o||q)return q=!1,p=!1,void l.complete();p=!0;var b=-1;for(var c in m){b=c;break}m[b];d(b),a.uploadpost({url:l.url,data:l.initialize(b),success:function(a){l.success(b,a),e()},error:function(a){l.error(b,a),e()},progress:function(a){l.progress(b,a)}})}function f(){r.dialog()}function g(a){for(a in m)d(a)}function h(){p||(p=!0,e())}function i(){q=!0}function j(b){return l=a.extend({},l,b)}function k(){return window.File&&window.FormData&&window.XMLHttpRequest&&window.FileList}var l=a.extend({},{dragover:function(){},dragleave:function(){},announce:function(){},initialize:function(){},progress:function(){},success:function(){},error:function(a,b){alert(b)},complete:function(){}},b),m={},n=0,o=0,p=!1,q=!1,r=a(this).uploadinput({multiple:!0,onchange:function(a){c(a)},ondragover:b.ondragover,ondragleave:b.ondragleave});return{select:f,add:c,remove:d,start:h,stop:i,reset:g,configure:j,compatible:k}}}(jQuery);
 //# sourceMappingURL=../../maps/utils/uploadbox.js.map
\ No newline at end of file
diff --git a/static/style/blue/base.css b/static/style/blue/base.css
index 71ea032eb66..209195ccd1e 100644
--- a/static/style/blue/base.css
+++ b/static/style/blue/base.css
@@ -1,4 +1,4 @@
 /*! normalize.css v2.1.0 | MIT License | git.io/normalize */article,aside,details,figcaption,figure,footer,header,hgroup,main,nav,section,summary{display:block}audio,canvas,video{display:inline-block}audio:not([controls]){display:none;height:0}[hidden]{display:none}html{font-family:sans-serif;-webkit-text-size-adjust:100%;-ms-text-size-adjust:100%}body{margin:0}a:focus{outline:thin dotted}a:active,a:hover{outline:0}h1{font-size:2em;margin:.67em 0}abbr[title]{border-bottom:1px dotted}b,strong{font-weight:bold}dfn{font-style:italic}hr{-moz-box-sizing:content-box;box-sizing:content-box;height:0}mark{background:#ff0;color:#000}code,kbd,pre,samp{font-family:monospace,serif;font-size:1em}pre{white-space:pre-wrap}q{quotes:"\201C" "\201D" "\2018" "\2019"}small{font-size:80%}sub,sup{font-size:75%;line-height:0;position:relative;vertical-align:baseline}sup{top:-0.5em}sub{bottom:-0.25em}img{border:0}svg:not(:root){overflow:hidden}figure{margin:0}fieldset{border:1px solid #c0c0c0;margin:0 2px;padding:.35em .625em .75em}legend{border:0;padding:0}button,input,select,textarea{font-family:inherit;font-size:100%;margin:0}button,input{line-height:normal}button,select{text-transform:none}button,html input[type="button"],input[type="reset"],input[type="submit"]{-webkit-appearance:button;cursor:pointer}button[disabled],html input[disabled]{cursor:default}input[type="checkbox"],input[type="radio"]{box-sizing:border-box;padding:0}input[type="search"]{-webkit-appearance:textfield;-moz-box-sizing:content-box;-webkit-box-sizing:content-box;box-sizing:content-box}input[type="search"]::-webkit-search-cancel-button,input[type="search"]::-webkit-search-decoration{-webkit-appearance:none}button::-moz-focus-inner,input::-moz-focus-inner{border:0;padding:0}textarea{overflow:auto;vertical-align:top}table{border-collapse:collapse;border-spacing:0}@media print{*{text-shadow:none !important;color:#000 !important;background:transparent !important;box-shadow:none 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.button,.peek-column-selector .control td.disabled:hover .button{background-color:transparent;border:1px solid #ccc;cursor:not-allowed;color:#ccc}.peek-column-selector .control td.selected .button{background-color:black;border:1px solid black;color:white}.pagination{margin:0}.pagination-scroll-container{display:inline-block;background-color:#f8f8f8;border-radius:3px;border:1px solid #bfbfbf;overflow:auto}.pagination-scroll-container .pagination-page-list{margin:3px 0 3px 0}.pagination-scroll-container .pagination-page-list>li:first-child>a,.pagination-scroll-container .pagination-page-list>li:first-child>span{border-radius:0;border-left:0}.pagination-scroll-container .pagination-page-list>li:last-child>a,.pagination-scroll-container .pagination-page-list>li:last-child>span{border-radius:0}.pagination-scroll-container .pagination-page-list>li>a{float:none;position:static;border:1px solid #bfbfbf;border-width:0 0 0 1px}.toolMenuContainer{color:#000;background:#dfe5f9;min-height:100%;padding:5px 10px}div.toolSectionPad{margin:0;padding:0;height:5px;font-size:0}div.toolSectionWrapper{margin-bottom:5px}div.toolSectionDetailsInner{margin-left:5px;margin-right:5px}div.toolSectionTitle{font-weight:bold}div.toolPanelLabel{padding-top:10px;padding-bottom:5px;font-weight:bold;color:gray;text-transform:uppercase}div.toolTitle{padding-top:5px;padding-bottom:5px;margin-left:16px;margin-right:10px;display:list-item;list-style:square outside}div.toolTitle .labels{float:right;margin-left:2px}div.toolSectionBody div.toolPanelLabel{padding-top:5px;padding-bottom:5px;margin-left:16px;margin-right:10px;display:list-item;list-style:none outside}div.toolTitleNoSection{padding-bottom:5px;font-weight:bold}#tool-search{padding-top:5px;padding-bottom:10px;position:relative}#loading_indicator{position:fixed;right:10px;top:10px;height:32px;width:32px;display:none;background:url(largespinner.gif)}#content_table td{text-align:right;white-space:nowrap;padding:2px 10px}#content_table th{white-space:nowrap;padding:2px 10px}#content_table td.stringalign{text-align:left}#content_table .dark_row{background-color:#ddd}#content_table th{background-color:#aaa}.toolMenuAndView .toolForm{float:left;background-color:white;margin:10px}.text-and-autocomplete-select{background:none;position:relative;padding-right:18px}.text-and-autocomplete-select:after{margin-top:6px;position:absolute;top:2px;right:6px;width:10px;height:10px;display:inline-block;width:0;height:0;margin-left:2px;vertical-align:middle;border-top:4px solid #000;border-right:4px solid transparent;border-left:4px solid transparent;border-bottom:0 dotted;content:"";opacity:80;-ms-filter:progid:DXImageTransform.Microsoft.Alpha(Opacity=8000);filter:alpha(opacity=8000)}.btn-default .text-and-autocomplete-select:after{border-top-color:#333}.btn-primary .text-and-autocomplete-select:after,.btn-success .text-and-autocomplete-select:after,.btn-warning .text-and-autocomplete-select:after,.btn-danger .text-and-autocomplete-select:after,.btn-info .text-and-autocomplete-select:after{border-top-color:#fff}.icon-button.general-question{background:url(question-octagon-frame.png) no-repeat;float:right;margin-top:3px;margin-right:4px}.icon-button.tag-question{background:url(question-balloon.png) no-repeat;float:right;margin-top:3px;margin-right:4px}.icon-button.tag{background-image:url(sprite-fugue.png);background-position:-16px -112px;width:16px;height:16px}.icon-button.tags{background-image:url(sprite-fugue.png);background-position:-32px -112px;width:16px;height:16px}.icon-button.tag--plus{background-image:url(sprite-fugue.png);background-position:0 -112px;width:16px;height:16px}.icon-button.toggle-expand{background-image:url(sprite-fugue.png);background-position:-80px -112px;width:16px;height:16px}.icon-button.toggle{background-image:url(sprite-fugue.png);background-position:-48px -112px;width:16px;height:16px}.icon-button.toggle:hover{background-image:url(sprite-fugue.png);background-position:-96px -112px;width:16px;height:16px}.icon-button.arrow-circle{background-image:url(sprite-fugue.png);background-position:-32px 0;width:16px;height:16px}.icon-button.chevron{background-image:url(sprite-fugue.png);background-position:-32px -64px;width:16px;height:16px}.icon-button.bug{background-image:url(sprite-fugue.png);background-position:-64px -32px;width:16px;height:16px}.icon-button.disk{background-image:url(sprite-fugue.png);background-position:-16px -80px;width:16px;height:16px}.icon-button.information{background-image:url(sprite-fugue.png);background-position:-96px -80px;width:16px;height:16px}.icon-button.annotate{background-image:url(sprite-fugue.png);background-position:-112px -96px;width:16px;height:16px}.icon-button.go-to-full-screen{background-image:url(sprite-fugue.png);background-position:0 0;width:16px;height:16px}.icon-button.import{background-image:url(sprite-fugue.png);background-position:-112px -80px;width:16px;height:16px}.icon-button.plus-button{background-image:url(sprite-fugue.png);background-position:-112px -48px;width:16px;height:16px}.icon-button.plus-button:hover{background-image:url(sprite-fugue.png);background-position:-112px -64px;width:16px;height:16px}.icon-button.gear{background-image:url(sprite-fugue.png);background-position:-96px 0;width:16px;height:16px}.icon-button.chart_curve{background-image:url(sprite-fugue.png);background-position:-64px -48px;width:16px;height:16px}.icon-button.disk--arrow{background-image:url(sprite-fugue.png);background-position:-80px -64px;width:16px;height:16px}.icon-button.disk--arrow:hover{background-image:url(sprite-fugue.png);background-position:0 -80px;width:16px;height:16px}.icon-button.cross-circle{background-image:url(sprite-fugue.png);background-position:-80px 0;width:16px;height:16px}.icon-button.cross-circle:hover{background-image:url(sprite-fugue.png);background-position:-80px -16px;width:16px;height:16px}.icon-button.arrow-split{background-image:url(sprite-fugue.png);background-position:-16px -32px;width:16px;height:16px}.icon-button.arrow-split:hover{background-image:url(sprite-fugue.png);background-position:-32px -32px;width:16px;height:16px}.icon-button.chevron-expand:hover{background-image:url(sprite-fugue.png);background-position:-16px -64px;width:16px;height:16px}.icon-button.chevron-expand{background-image:url(sprite-fugue.png);background-position:0 -64px;width:16px;height:16px}.noscript-overlay{position:absolute;width:100%;height:100%;background:white;z-index:10000}.noscript-overlay>div{margin:64px 0 0 64px}#for_bears{display:none}
\ No newline at end of file
diff --git a/test/api/helpers.py b/test/api/helpers.py
index 4dce1e61ca5..49fcf6e5bd9 100644
--- a/test/api/helpers.py
+++ b/test/api/helpers.py
@@ -83,7 +83,10 @@ class BaseDatasetPopulator( object ):
             raise
 
     def wait_for_job( self, job_id, assert_ok=False, timeout=DEFAULT_TIMEOUT ):
-        return wait_on_state( lambda: self._get( "jobs/%s" % job_id ), assert_ok=assert_ok, timeout=timeout )
+        return wait_on_state( lambda: self.get_job_details( job_id ), assert_ok=assert_ok, timeout=timeout )
+
+    def get_job_details( self, job_id, full=False ):
+        return self._get( "jobs/%s?full=%s" % (job_id, full) )
 
     def _summarize_history_errors( self, history_id ):
         pass
diff --git a/test/functional/tools/samples_tool_conf.xml b/test/functional/tools/samples_tool_conf.xml
index 2ad67eff206..890b006bb5b 100644
--- a/test/functional/tools/samples_tool_conf.xml
+++ b/test/functional/tools/samples_tool_conf.xml
@@ -18,6 +18,7 @@
   <tool file="dbkey_filter_input.xml" />
   <tool file="dbkey_filter_multi_input.xml" />
   <tool file="composite_output.xml" />
+  <tool file="unicode_stream.xml" />
   <tool file="metadata.xml" />
   <tool file="metadata_bam.xml" />
   <tool file="metadata_bcf.xml" />
diff --git a/test/functional/tools/unicode_stream.xml b/test/functional/tools/unicode_stream.xml
new file mode 100644
index 00000000000..941f3f9fa66
--- /dev/null
+++ b/test/functional/tools/unicode_stream.xml
@@ -0,0 +1,41 @@
+<tool id="unicode_stream" name="unicode_stream" version="0.1.0">
+    <description>
+    </description>
+    <configfiles>
+        <configfile name="cf">ვეპხის ტყაოსანი შოთა რუსთაველი
+</configfile>
+    </configfiles>
+    <command detect_errors="exit_code">
+        echo '$input1' > $out_file1;
+        cat $cf;
+        >&amp;2 cat $cf;
+        sh -c "exit $exit"
+    </command>
+    <inputs>
+        <param name="input1" type="text" label="Input">
+            <sanitizer sanitize="False">
+            </sanitizer>
+        </param>
+        <param name="exit" type="integer" value="0" label="Exit Code" />
+    </inputs>
+    <outputs>
+        <data name="out_file1" format="txt" />
+    </outputs>
+    <tests>
+        <test expect_exit_code="0" expect_failure="false">
+            <param name="input1" value="This is a line of text."/>
+            <param name="exit" value="0" />
+            <output name="out_file1" file="simple_line.txt" />
+        </test>
+        <test expect_exit_code="1" expect_failure="true">
+            <param name="input1" value="This is a line of text."/>
+            <param name="exit" value="1" />
+        </test>
+        <test expect_exit_code="0" expect_failure="false">
+            <param name="input1" value="ვვვვვ"/>
+            <param name="exit" value="0" />
+        </test>
+    </tests>
+    <help>
+    </help>
+</tool>
diff --git a/test/unit/jobs/test_job_output_checker.py b/test/unit/jobs/test_job_output_checker.py
index 62a5ae894ce..cfea0a41456 100644
--- a/test/unit/jobs/test_job_output_checker.py
+++ b/test/unit/jobs/test_job_output_checker.py
@@ -3,6 +3,7 @@ from galaxy.util.bunch import Bunch
 from galaxy.jobs.output_checker import check_output
 from galaxy.jobs.error_level import StdioErrorLevel
 from galaxy.tools.parser.interface import ToolStdioRegex
+from galaxy.model import Job
 
 
 class OutputCheckerTestCase( TestCase ):
@@ -12,11 +13,8 @@ class OutputCheckerTestCase( TestCase ):
             stdio_regexes=[],
             stdio_exit_codes=[],
         )
-        self.job = Bunch(
-            stdout=None,
-            stderr=None,
-            get_id_tag=lambda: "test_id",
-        )
+        self.job = Job()
+        self.job.id = "test_id"
         self.stdout = ''
         self.stderr = ''
         self.tool_exit_code = None
diff --git a/tools/filters/wig_to_bigwig.xml b/tools/filters/wig_to_bigwig.xml
index e9409f8a25a..261229dbdbb 100644
--- a/tools/filters/wig_to_bigwig.xml
+++ b/tools/filters/wig_to_bigwig.xml
@@ -1,15 +1,25 @@
 <tool id="wig_to_bigWig" name="Wig/BedGraph-to-bigWig" version="1.1.0">
   <description>converter</description>
-  <command>grep -v "^track" $input1 | wigToBigWig stdin $chromInfo $out_file1 
+  <requirements>
+    <requirement type="package">ucsc_tools</requirement>
+  </requirements>
+  <stdio>
+      <!-- Anything other than zero is an error -->
+      <regex match="needLargeMem: trying to allocate 0 bytes"
+          description="Your input file might be empty or wrongly formatted"/>
+      <regex match="^Error"/>
+  </stdio>
+  <command>
+      <![CDATA[
+      grep -v "^track" $input1 | wigToBigWig stdin $chromInfo $out_file1
     #if $settings.settingsType == "full":
       -blockSize=${settings.blockSize} -itemsPerSlot=${settings.itemsPerSlot} ${settings.clip} ${settings.unc}
     #else:
       -clip
     #end if
-    2&gt;&amp;1 || echo "Error running wigToBigWig." >&amp;2</command>
-  <requirements>
-    <requirement type="package">ucsc_tools</requirement>
-  </requirements>
+    2>&1 || echo "Error running wigToBigWig." >&2
+    ]]>
+  </command>
   <inputs>
     <param format="wig,bedgraph" name="input1" type="data" label="Convert">
       <validator type="unspecified_build" />
diff --git a/tools/stats/gsummary.py b/tools/stats/gsummary.py
index 3249d671550..8905eaf9c80 100755
--- a/tools/stats/gsummary.py
+++ b/tools/stats/gsummary.py
@@ -107,7 +107,12 @@ def main():
             stop_err( "Computation resulted in the following error: %s" % str( s ) )
         summary = summary.as_py( BASIC_CONVERSION )
         outfile.write( "#%s\n" % headings_str )
-        outfile.write( "%s\n" % "\t".join( [ "%g" % k for k in summary ] ) )
+        if type(summary) is dict:
+            # using rpy
+            outfile.write( "%s\n" % "\t".join( [ "%g" % summary[k] for k in headings ] ) )
+        else:
+            # using rpy2
+            outfile.write( "%s\n" % "\t".join( [ "%g" % k for k in summary ] ) )
         outfile.close()
 
         if skipped_lines: