diff --git a/client/galaxy/scripts/mvc/app/app-analysis.js b/client/galaxy/scripts/mvc/app/app-analysis.js
index e4a31febba2..2cc08b6b89f 100644
--- a/client/galaxy/scripts/mvc/app/app-analysis.js
+++ b/client/galaxy/scripts/mvc/app/app-analysis.js
@@ -10,7 +10,7 @@ define(['utils/utils', 'mvc/tools', 'mvc/upload/upload-view', 'mvc/ui/ui-misc',
             var params = this.options.params;
             this.$( '#galaxy_main' ).prop( 'src', Galaxy.root + (
                 ( params.tool_id && ( 'tool_runner?' + $.param( params ) ) ) ||
-                ( params.workflow_id && ( 'workflow/run?workflow_id=' + params.workflow_id ) ) ||
+                ( params.workflow_id && ( 'workflow/run?id=' + params.workflow_id ) ) ||
                 ( params.m_c && ( params.m_c + '/' + params.m_a ) ) ||
                 ( Galaxy.config.require_login && !Galaxy.user.id && 'user/login') ||
                 'root/welcome'
@@ -42,7 +42,7 @@ define(['utils/utils', 'mvc/tools', 'mvc/upload/upload-view', 'mvc/ui/ui-misc',
                     layout      : options.toolbox_in_panel
                 });
                 tool_panel_view = new Tools.ToolPanelView({ model: tool_panel });
-            
+
                 // add tool panel to Galaxy object
                 Galaxy.toolPanel = tool_panel;
 
@@ -51,7 +51,18 @@ define(['utils/utils', 'mvc/tools', 'mvc/upload/upload-view', 'mvc/ui/ui-misc',
                     tool_panel_view.render();
                     this.$( '.toolMenu' ).show();
                 }
-                this.$el.append( tool_panel_view.$el );
+                this.$el.prepend( tool_panel_view.$el );
+                this.$( '.toolSectionBody' ).append( this._templateTool({
+                    title   : 'All workflows',
+                    href    : 'workflow/list_for_run'
+                }) )
+                for ( var i in options.stored_workflow_menu_entries ) {
+                    var m = options.stored_workflow_menu_entries[ i ];
+                    this.$( '.toolSectionBody' ).append( this._templateTool({
+                        title : m.stored_workflow.name,
+                        href  : 'workflow/run?id=' + m.encoded_stored_workflow_id
+                    }) );
+                }
 
                 // minsize init hint
                 this.$( 'a[minsizehint]' ).click( function() {
@@ -73,35 +84,28 @@ define(['utils/utils', 'mvc/tools', 'mvc/upload/upload-view', 'mvc/ui/ui-misc',
             }
         },
 
-        _template: function() {
-            var tmpl =  '<div class="toolMenuContainer">' +
-                            '<div class="toolMenu" style="display: none">' +
-                                '<div id="search-no-results" style="display: none; padding-top: 5px">' +
-                                    '<em><strong>Search did not match any tools.</strong></em>' +
-                                '</div>' +
-                            '</div>' +
-                            '<div class="toolSectionPad"/>' +
-                            '<div class="toolSectionPad"/>' +
-                            '<div class="toolSectionTitle" id="title_XXinternalXXworkflow">' +
-                                '<span>Workflows</span>' +
-                            '</div>' +
-                            '<div id="XXinternalXXworkflow" class="toolSectionBody">' +
-                                '<div class="toolSectionBg">';
+        _templateTool: function( options ) {
+            return  '<div class="toolTitle">' +
+                        '<a href="' + Galaxy.root + options.href + '" target="galaxy_main">' + options.title + '</a>' +
+                    '</div>';
+        },
 
-                        /*%if t.user.stored_workflow_menu_entries:
-                            %for m in t.user.stored_workflow_menu_entries:
-                                <div class="toolTitle">
-                                    <a href="${h.url_for( controller='workflow', action='run', id=trans.security.encode_id(m.stored_workflow_id) )}" target="galaxy_main">${ util.unicodify( m.stored_workflow.name ) | h}</a>
-                                </div>
-                            %endfor
-                        %endif*/
-            tmpl +=                 '<div class="toolTitle">' +
-                                        '<a href="' + Galaxy.root + '/workflow/list_for_run" target="galaxy_main">All workflows</a>' +
-                                    '</div>' +
-                                '</div>' +
+        _template: function() {
+            return  '<div class="toolMenuContainer">' +
+                        '<div class="toolMenu" style="display: none">' +
+                            '<div id="search-no-results" style="display: none; padding-top: 5px">' +
+                                '<em><strong>Search did not match any tools.</strong></em>' +
                             '</div>' +
-                        '</div>';
-            return tmpl;
+                        '</div>' +
+                        '<div class="toolSectionPad"/>' +
+                        '<div class="toolSectionPad"/>' +
+                        '<div class="toolSectionTitle" id="title_XXinternalXXworkflow">' +
+                            '<span>Workflows</span>' +
+                        '</div>' +
+                        '<div id="XXinternalXXworkflow" class="toolSectionBody">' +
+                            '<div class="toolSectionBg"/>' +
+                        '</div>' +
+                    '</div>';
         }
     });
 
diff --git a/static/maps/mvc/app/app-analysis.js.map b/static/maps/mvc/app/app-analysis.js.map
index b02ac9c6c35..e01a908a10a 100644
--- a/static/maps/mvc/app/app-analysis.js.map
+++ b/static/maps/mvc/app/app-analysis.js.map
@@ -1 +1 @@
-{"version":3,"file":"app-analysis.js","sources":["../../../src/mvc/app/app-analysis.js"],"names":["define","Utils","Tools","Upload","Ui","optionsMenu","HistoryPanel","CenterPanel","Backbone","View","extend","initialize","options","this","merge","setElement","_template","params","$","prop","Galaxy","root","tool_id","param","workflow_id","m_c","m_a","config","require_login","user","id","LeftPanel","tool_search","ToolSearch","spinner_url","search_url","hidden","tools","ToolCollection","toolbox","tool_panel","ToolPanel","layout","toolbox_in_panel","tool_panel_view","ToolPanelView","model","toolPanel","get","size","render","show","$el","append","click","parent","handle_minwidth_hint","attr","upload","components","header","title","buttons","tmpl","RightPanel","buttonRefresh","ButtonLink","cls","icon","onclick","top","currHistoryPanel","loadCurrentHistory","buttonOptions","target","href","buttonViewMulti","body","historyOptionsMenu","anonymous","purgeAllowed","allow_user_dataset_purge","CurrentHistoryPanel","el","linkTarget","$scrollContainer","connectToQuotaMeter","quotaMeter","listenToGalaxy","left","center","right"],"mappings":"AAAAA,QAAQ,cAAe,YAAa,yBAA0B,iBACtD,2BAA4B,0CAChC,SAAUC,EAAOC,EAAOC,EAAQC,EAAIC,EAAaC,GAGjD,GAAIC,GAAcC,SAASC,KAAKC,QAC5BC,WAAY,SAAUC,GAClBC,KAAKD,QAAUX,EAAMa,MAAOF,MAC5BC,KAAKE,WAAYF,KAAKG,YACtB,IAAIC,GAASJ,KAAKD,QAAQK,MAC1BJ,MAAKK,EAAG,gBAAiBC,KAAM,MAAOC,OAAOC,MACvCJ,EAAOK,SAAa,eAAiBJ,EAAEK,MAAON,IAC9CA,EAAOO,aAAiB,4BAA8BP,EAAOO,aAC7DP,EAAOQ,KAASR,EAAOQ,IAAM,IAAMR,EAAOS,KAC1CN,OAAOO,OAAOC,gBAAkBR,OAAOS,KAAKC,IAAM,cACpD,kBAGRd,UAAW,WACP,MAAQ,2LAOZe,EAAYvB,SAASC,KAAKC,QAC1BC,WAAY,SAAUC,GAIlB,GAHAC,KAAKD,QAAUX,EAAMa,MAAOF,MAC5BC,KAAKE,WAAYF,KAAKG,aAEjBI,OAAOS,KAAKC,KAAOV,OAAOO,OAAOC,cAAgB,CAClD,GAAII,GAAc,GAAI9B,GAAM+B,YACxBC,YAActB,EAAQsB,YACtBC,WAAcvB,EAAQuB,WACtBC,QAAc,IAEdC,EAAQ,GAAInC,GAAMoC,eAAgB1B,EAAQ2B,SAC1CC,EAAa,GAAItC,GAAMuC,WACvBT,YAAcA,EACdK,MAAcA,EACdK,OAAc9B,EAAQ+B,kBAE1BC,iBAAkB,GAAI1C,GAAM2C,eAAgBC,MAAON,IAGnDpB,OAAO2B,UAAYP,EAGfA,EAAWQ,IAAK,UAAWC,OAAS,IACpCL,gBAAgBM,SAChBrC,KAAKK,EAAG,aAAciC,QAE1BtC,KAAKuC,IAAIC,OAAQT,gBAAgBQ,KAGjCvC,KAAKK,EAAG,kBAAmBoC,MAAO,WACzBC,OAAOC,sBACRD,OAAOC,qBAAsBtC,EAAGL,MAAO4C,KAAM,kBAKrDrC,OAAOsC,OAAS,GAAIvD,GAAQS,GAG5BC,KAAK8C,YACDC,QACIC,MAAU,QACVC,SAAY1C,OAAOsC,YAMnC1C,UAAW,WACP,GAAI+C,GAAQ,4bA2BZ,OANAA,IAAwB,mCACkB3C,OAAOC,KAAO,4FAU5D2C,EAAaxD,SAASC,KAAKC,QAC3BC,WAAY,SAASC,GACjBC,KAAKD,QAAUX,EAAMa,MAAOF,MAC5BC,KAAKE,WAAYF,KAAKG,YAGtB,IAAIiD,GAAgB,GAAI7D,GAAG8D,YACvBpC,GAAU,yBACV+B,MAAU,kBACVM,IAAU,sBACVC,KAAU,gBACVC,QAAU,WACFC,IAAIlD,QAAUkD,IAAIlD,OAAOmD,kBACzBD,IAAIlD,OAAOmD,iBAAiBC,wBAIpCC,EAAgB,GAAIrE,GAAG8D,YACvBpC,GAAU,yBACV+B,MAAU,kBACVM,IAAU,sBACVO,OAAU,cACVN,KAAU,YACVO,KAAUvD,OAAOC,KAAO,yBAExBuD,EAAkB,GAAIxE,GAAG8D,YACzBpC,GAAU,4BACV+B,MAAU,qBACVM,IAAU,sBACVC,KAAU,gBACVO,KAAUvD,OAAOC,KAAO,yBAI5BR,MAAK8C,YACDC,QACIC,MAAU,UACVM,IAAU,uBACVL,SAAYG,EAAeQ,EAAeG,IAE9CC,MACIV,IAAU,kCAKlB/C,OAAO0D,mBAAqBzE,EAAaoE,EAAcrB,KACnD2B,UAAe3D,OAAOS,KAAKC,IAAM,QAAU,QAC3CkD,aAAe5D,OAAOO,OAAOsD,0BAA4B,QAAU,QACnE5D,KAAeD,OAAOC,OAI1BD,OAAOmD,iBAAmB,GAAIjE,GAAa4E,qBACvCC,GAAkBtE,KAAKuC,IACvB4B,aAAkB5D,OAAOO,OAAOsD,yBAChCG,WAAkB,cAClBC,iBAAkB,WAAY,MAAOxE,MAAKuC,IAAIG,YAElDnC,OAAOmD,iBAAiBe,oBAAqBlE,OAAOmE,YACpDnE,OAAOmD,iBAAiBiB,eAAgBpE,QACxCA,OAAOmD,iBAAiBC,sBAI5BxD,UAAW,WACP,MAAO,4DAIf,QACIyE,KAAU1D,EACV2D,OAAUnF,EACVoF,MAAU3B"}
\ No newline at end of file
+{"version":3,"file":"app-analysis.js","sources":["../../../src/mvc/app/app-analysis.js"],"names":["define","Utils","Tools","Upload","Ui","optionsMenu","HistoryPanel","CenterPanel","Backbone","View","extend","initialize","options","this","merge","setElement","_template","params","$","prop","Galaxy","root","tool_id","param","workflow_id","m_c","m_a","config","require_login","user","id","LeftPanel","tool_search","ToolSearch","spinner_url","search_url","hidden","tools","ToolCollection","toolbox","tool_panel","ToolPanel","layout","toolbox_in_panel","tool_panel_view","ToolPanelView","model","toolPanel","get","size","render","show","$el","prepend","append","_templateTool","title","href","i","stored_workflow_menu_entries","m","stored_workflow","name","encoded_stored_workflow_id","click","parent","handle_minwidth_hint","attr","upload","components","header","buttons","RightPanel","buttonRefresh","ButtonLink","cls","icon","onclick","top","currHistoryPanel","loadCurrentHistory","buttonOptions","target","buttonViewMulti","body","historyOptionsMenu","anonymous","purgeAllowed","allow_user_dataset_purge","CurrentHistoryPanel","el","linkTarget","$scrollContainer","connectToQuotaMeter","quotaMeter","listenToGalaxy","left","center","right"],"mappings":"AAAAA,QAAQ,cAAe,YAAa,yBAA0B,iBACtD,2BAA4B,0CAChC,SAAUC,EAAOC,EAAOC,EAAQC,EAAIC,EAAaC,GAGjD,GAAIC,GAAcC,SAASC,KAAKC,QAC5BC,WAAY,SAAUC,GAClBC,KAAKD,QAAUX,EAAMa,MAAOF,MAC5BC,KAAKE,WAAYF,KAAKG,YACtB,IAAIC,GAASJ,KAAKD,QAAQK,MAC1BJ,MAAKK,EAAG,gBAAiBC,KAAM,MAAOC,OAAOC,MACvCJ,EAAOK,SAAa,eAAiBJ,EAAEK,MAAON,IAC9CA,EAAOO,aAAiB,mBAAqBP,EAAOO,aACpDP,EAAOQ,KAASR,EAAOQ,IAAM,IAAMR,EAAOS,KAC1CN,OAAOO,OAAOC,gBAAkBR,OAAOS,KAAKC,IAAM,cACpD,kBAGRd,UAAW,WACP,MAAQ,2LAOZe,EAAYvB,SAASC,KAAKC,QAC1BC,WAAY,SAAUC,GAIlB,GAHAC,KAAKD,QAAUX,EAAMa,MAAOF,MAC5BC,KAAKE,WAAYF,KAAKG,aAEjBI,OAAOS,KAAKC,KAAOV,OAAOO,OAAOC,cAAgB,CAClD,GAAII,GAAc,GAAI9B,GAAM+B,YACxBC,YAActB,EAAQsB,YACtBC,WAAcvB,EAAQuB,WACtBC,QAAc,IAEdC,EAAQ,GAAInC,GAAMoC,eAAgB1B,EAAQ2B,SAC1CC,EAAa,GAAItC,GAAMuC,WACvBT,YAAcA,EACdK,MAAcA,EACdK,OAAc9B,EAAQ+B,kBAE1BC,iBAAkB,GAAI1C,GAAM2C,eAAgBC,MAAON,IAGnDpB,OAAO2B,UAAYP,EAGfA,EAAWQ,IAAK,UAAWC,OAAS,IACpCL,gBAAgBM,SAChBrC,KAAKK,EAAG,aAAciC,QAE1BtC,KAAKuC,IAAIC,QAAST,gBAAgBQ,KAClCvC,KAAKK,EAAG,oBAAqBoC,OAAQzC,KAAK0C,eACtCC,MAAU,gBACVC,KAAU,0BAEd,KAAM,GAAIC,KAAK9C,GAAQ+C,6BAA+B,CAClD,GAAIC,GAAIhD,EAAQ+C,6BAA8BD,EAC9C7C,MAAKK,EAAG,oBAAqBoC,OAAQzC,KAAK0C,eACtCC,MAAQI,EAAEC,gBAAgBC,KAC1BL,KAAQ,mBAAqBG,EAAEG,8BAKvClD,KAAKK,EAAG,kBAAmB8C,MAAO,WACzBC,OAAOC,sBACRD,OAAOC,qBAAsBhD,EAAGL,MAAOsD,KAAM,kBAKrD/C,OAAOgD,OAAS,GAAIjE,GAAQS,GAG5BC,KAAKwD,YACDC,QACId,MAAU,QACVe,SAAYnD,OAAOgD,YAMnCb,cAAe,SAAU3C,GACrB,MAAQ,mCACkBQ,OAAOC,KAAOT,EAAQ6C,KAAO,0BAA4B7C,EAAQ4C,MAAQ,cAIvGxC,UAAW,WACP,MAAQ,6cAmBZwD,EAAahE,SAASC,KAAKC,QAC3BC,WAAY,SAASC,GACjBC,KAAKD,QAAUX,EAAMa,MAAOF,MAC5BC,KAAKE,WAAYF,KAAKG,YAGtB,IAAIyD,GAAgB,GAAIrE,GAAGsE,YACvB5C,GAAU,yBACV0B,MAAU,kBACVmB,IAAU,sBACVC,KAAU,gBACVC,QAAU,WACFC,IAAI1D,QAAU0D,IAAI1D,OAAO2D,kBACzBD,IAAI1D,OAAO2D,iBAAiBC,wBAIpCC,EAAgB,GAAI7E,GAAGsE,YACvB5C,GAAU,yBACV0B,MAAU,kBACVmB,IAAU,sBACVO,OAAU,cACVN,KAAU,YACVnB,KAAUrC,OAAOC,KAAO,yBAExB8D,EAAkB,GAAI/E,GAAGsE,YACzB5C,GAAU,4BACV0B,MAAU,qBACVmB,IAAU,sBACVC,KAAU,gBACVnB,KAAUrC,OAAOC,KAAO,yBAI5BR,MAAKwD,YACDC,QACId,MAAU,UACVmB,IAAU,uBACVJ,SAAYE,EAAeQ,EAAeE,IAE9CC,MACIT,IAAU,kCAKlBvD,OAAOiE,mBAAqBhF,EAAa4E,EAAc7B,KACnDkC,UAAelE,OAAOS,KAAKC,IAAM,QAAU,QAC3CyD,aAAenE,OAAOO,OAAO6D,0BAA4B,QAAU,QACnEnE,KAAeD,OAAOC,OAI1BD,OAAO2D,iBAAmB,GAAIzE,GAAamF,qBACvCC,GAAkB7E,KAAKuC,IACvBmC,aAAkBnE,OAAOO,OAAO6D,yBAChCG,WAAkB,cAClBC,iBAAkB,WAAY,MAAO/E,MAAKuC,IAAIa,YAElD7C,OAAO2D,iBAAiBc,oBAAqBzE,OAAO0E,YACpD1E,OAAO2D,iBAAiBgB,eAAgB3E,QACxCA,OAAO2D,iBAAiBC,sBAI5BhE,UAAW,WACP,MAAO,4DAIf,QACIgF,KAAUjE,EACVkE,OAAU1F,EACV2F,MAAU1B"}
\ No newline at end of file
diff --git a/static/scripts/mvc/app/app-analysis.js b/static/scripts/mvc/app/app-analysis.js
index 3904f35c9d3..94746603e44 100644
--- a/static/scripts/mvc/app/app-analysis.js
+++ b/static/scripts/mvc/app/app-analysis.js
@@ -1,2 +1,2 @@
-define(["utils/utils","mvc/tools","mvc/upload/upload-view","mvc/ui/ui-misc","mvc/history/options-menu","mvc/history/history-panel-edit-current"],function(a,b,c,d,e,f){var g=Backbone.View.extend({initialize:function(b){this.options=a.merge(b,{}),this.setElement(this._template());var c=this.options.params;this.$("#galaxy_main").prop("src",Galaxy.root+(c.tool_id&&"tool_runner?"+$.param(c)||c.workflow_id&&"workflow/run?workflow_id="+c.workflow_id||c.m_c&&c.m_c+"/"+c.m_a||Galaxy.config.require_login&&!Galaxy.user.id&&"user/login"||"root/welcome"))},_template:function(){return'<div style="position: absolute; width: 100%; height: 100%"><iframe name="galaxy_main" id="galaxy_main" frameborder="0" style="position: absolute; width: 100%; height: 100%;"/></div>'}}),h=Backbone.View.extend({initialize:function(d){if(this.options=a.merge(d,{}),this.setElement(this._template()),Galaxy.user.id||!Galaxy.config.require_login){var e=new b.ToolSearch({spinner_url:d.spinner_url,search_url:d.search_url,hidden:!1}),f=new b.ToolCollection(d.toolbox),g=new b.ToolPanel({tool_search:e,tools:f,layout:d.toolbox_in_panel});tool_panel_view=new b.ToolPanelView({model:g}),Galaxy.toolPanel=g,g.get("layout").size()>0&&(tool_panel_view.render(),this.$(".toolMenu").show()),this.$el.append(tool_panel_view.$el),this.$("a[minsizehint]").click(function(){parent.handle_minwidth_hint&&parent.handle_minwidth_hint($(this).attr("minsizehint"))}),Galaxy.upload=new c(d),this.components={header:{title:"Tools",buttons:[Galaxy.upload]}}}},_template:function(){var a='<div class="toolMenuContainer"><div class="toolMenu" style="display: none"><div id="search-no-results" style="display: none; padding-top: 5px"><em><strong>Search did not match any tools.</strong></em></div></div><div class="toolSectionPad"/><div class="toolSectionPad"/><div class="toolSectionTitle" id="title_XXinternalXXworkflow"><span>Workflows</span></div><div id="XXinternalXXworkflow" class="toolSectionBody"><div class="toolSectionBg">';return a+='<div class="toolTitle"><a href="'+Galaxy.root+'/workflow/list_for_run" target="galaxy_main">All workflows</a></div></div></div></div>'}}),i=Backbone.View.extend({initialize:function(b){this.options=a.merge(b,{}),this.setElement(this._template());var c=new d.ButtonLink({id:"history-refresh-button",title:"Refresh history",cls:"panel-header-button",icon:"fa fa-refresh",onclick:function(){top.Galaxy&&top.Galaxy.currHistoryPanel&&top.Galaxy.currHistoryPanel.loadCurrentHistory()}}),g=new d.ButtonLink({id:"history-options-button",title:"History options",cls:"panel-header-button",target:"galaxy_main",icon:"fa fa-cog",href:Galaxy.root+"root/history_options"}),h=new d.ButtonLink({id:"history-view-multi-button",title:"View all histories",cls:"panel-header-button",icon:"fa fa-columns",href:Galaxy.root+"history/view_multiple"});this.components={header:{title:"History",cls:"history-panel-header",buttons:[c,g,h]},body:{cls:"unified-panel-body-background"}},Galaxy.historyOptionsMenu=e(g.$el,{anonymous:Galaxy.user.id&&"true"||"false",purgeAllowed:Galaxy.config.allow_user_dataset_purge&&"true"||"false",root:Galaxy.root}),Galaxy.currHistoryPanel=new f.CurrentHistoryPanel({el:this.$el,purgeAllowed:Galaxy.config.allow_user_dataset_purge,linkTarget:"galaxy_main",$scrollContainer:function(){return this.$el.parent()}}),Galaxy.currHistoryPanel.connectToQuotaMeter(Galaxy.quotaMeter),Galaxy.currHistoryPanel.listenToGalaxy(Galaxy),Galaxy.currHistoryPanel.loadCurrentHistory()},_template:function(){return'<div id="current-history-panel" class="history-panel"/>'}});return{left:h,center:g,right:i}});
+define(["utils/utils","mvc/tools","mvc/upload/upload-view","mvc/ui/ui-misc","mvc/history/options-menu","mvc/history/history-panel-edit-current"],function(a,b,c,d,e,f){var g=Backbone.View.extend({initialize:function(b){this.options=a.merge(b,{}),this.setElement(this._template());var c=this.options.params;this.$("#galaxy_main").prop("src",Galaxy.root+(c.tool_id&&"tool_runner?"+$.param(c)||c.workflow_id&&"workflow/run?id="+c.workflow_id||c.m_c&&c.m_c+"/"+c.m_a||Galaxy.config.require_login&&!Galaxy.user.id&&"user/login"||"root/welcome"))},_template:function(){return'<div style="position: absolute; width: 100%; height: 100%"><iframe name="galaxy_main" id="galaxy_main" frameborder="0" style="position: absolute; width: 100%; height: 100%;"/></div>'}}),h=Backbone.View.extend({initialize:function(d){if(this.options=a.merge(d,{}),this.setElement(this._template()),Galaxy.user.id||!Galaxy.config.require_login){var e=new b.ToolSearch({spinner_url:d.spinner_url,search_url:d.search_url,hidden:!1}),f=new b.ToolCollection(d.toolbox),g=new b.ToolPanel({tool_search:e,tools:f,layout:d.toolbox_in_panel});tool_panel_view=new b.ToolPanelView({model:g}),Galaxy.toolPanel=g,g.get("layout").size()>0&&(tool_panel_view.render(),this.$(".toolMenu").show()),this.$el.prepend(tool_panel_view.$el),this.$(".toolSectionBody").append(this._templateTool({title:"All workflows",href:"workflow/list_for_run"}));for(var h in d.stored_workflow_menu_entries){var i=d.stored_workflow_menu_entries[h];this.$(".toolSectionBody").append(this._templateTool({title:i.stored_workflow.name,href:"workflow/run?id="+i.encoded_stored_workflow_id}))}this.$("a[minsizehint]").click(function(){parent.handle_minwidth_hint&&parent.handle_minwidth_hint($(this).attr("minsizehint"))}),Galaxy.upload=new c(d),this.components={header:{title:"Tools",buttons:[Galaxy.upload]}}}},_templateTool:function(a){return'<div class="toolTitle"><a href="'+Galaxy.root+a.href+'" target="galaxy_main">'+a.title+"</a></div>"},_template:function(){return'<div class="toolMenuContainer"><div class="toolMenu" style="display: none"><div id="search-no-results" style="display: none; padding-top: 5px"><em><strong>Search did not match any tools.</strong></em></div></div><div class="toolSectionPad"/><div class="toolSectionPad"/><div class="toolSectionTitle" id="title_XXinternalXXworkflow"><span>Workflows</span></div><div id="XXinternalXXworkflow" class="toolSectionBody"><div class="toolSectionBg"/></div></div>'}}),i=Backbone.View.extend({initialize:function(b){this.options=a.merge(b,{}),this.setElement(this._template());var c=new d.ButtonLink({id:"history-refresh-button",title:"Refresh history",cls:"panel-header-button",icon:"fa fa-refresh",onclick:function(){top.Galaxy&&top.Galaxy.currHistoryPanel&&top.Galaxy.currHistoryPanel.loadCurrentHistory()}}),g=new d.ButtonLink({id:"history-options-button",title:"History options",cls:"panel-header-button",target:"galaxy_main",icon:"fa fa-cog",href:Galaxy.root+"root/history_options"}),h=new d.ButtonLink({id:"history-view-multi-button",title:"View all histories",cls:"panel-header-button",icon:"fa fa-columns",href:Galaxy.root+"history/view_multiple"});this.components={header:{title:"History",cls:"history-panel-header",buttons:[c,g,h]},body:{cls:"unified-panel-body-background"}},Galaxy.historyOptionsMenu=e(g.$el,{anonymous:Galaxy.user.id&&"true"||"false",purgeAllowed:Galaxy.config.allow_user_dataset_purge&&"true"||"false",root:Galaxy.root}),Galaxy.currHistoryPanel=new f.CurrentHistoryPanel({el:this.$el,purgeAllowed:Galaxy.config.allow_user_dataset_purge,linkTarget:"galaxy_main",$scrollContainer:function(){return this.$el.parent()}}),Galaxy.currHistoryPanel.connectToQuotaMeter(Galaxy.quotaMeter),Galaxy.currHistoryPanel.listenToGalaxy(Galaxy),Galaxy.currHistoryPanel.loadCurrentHistory()},_template:function(){return'<div id="current-history-panel" class="history-panel"/>'}});return{left:h,center:g,right:i}});
 //# sourceMappingURL=../../../maps/mvc/app/app-analysis.js.map
\ No newline at end of file
diff --git a/templates/webapps/galaxy/root/index.mako b/templates/webapps/galaxy/root/index.mako
index 250f45edf16..2c3a4edabe2 100644
--- a/templates/webapps/galaxy/root/index.mako
+++ b/templates/webapps/galaxy/root/index.mako
@@ -10,37 +10,45 @@
     from markupsafe import escape
     app = trans.app
     app_config = {
-        'active_view'               : 'analysis',
-        'params'                    : dict( trans.request.params ),
-        'brand'                     : app.config.get("brand", ""),
-        'nginx_upload_path'         : app.config.get("nginx_upload_path", h.url_for(controller='api', action='tools')),
-        'use_remote_user'           : app.config.use_remote_user,
-        'remote_user_logout_href'   : app.config.remote_user_logout_href,
-        'enable_cloud_launch'       : app.config.get_bool('enable_cloud_launch', False),
-        'lims_doc_url'              : app.config.get("lims_doc_url", "https://usegalaxy.org/u/rkchak/p/sts"),
-        'biostar_url'               : app.config.biostar_url,
-        'biostar_url_redirect'      : h.url_for( controller='biostar', action='biostar_redirect', qualified=True ),
-        'support_url'               : app.config.get("support_url", "https://wiki.galaxyproject.org/Support"),
-        'search_url'                : app.config.get("search_url", "http://galaxyproject.org/search/usegalaxy/"),
-        'mailing_lists'             : app.config.get("mailing_lists", "https://wiki.galaxyproject.org/MailingLists"),
-        'screencasts_url'           : app.config.get("screencasts_url", "https://vimeo.com/galaxyproject"),
-        'wiki_url'                  : app.config.get("wiki_url", "https://wiki.galaxyproject.org/"),
-        'citation_url'              : app.config.get("citation_url", "https://wiki.galaxyproject.org/CitingGalaxy"),
-        'terms_url'                 : app.config.get("terms_url", ""),
-        'allow_user_creation'       : app.config.allow_user_creation,
-        'logo_url'                  : h.url_for(app.config.get( 'logo_url', '/')),
-        'spinner_url'               : h.url_for('/static/images/loading_small_white_bg.gif'),
-        'search_url'                : h.url_for(controller='root', action='tool_search'),
-        'is_admin_user'             : trans.user_is_admin(),
-        'ftp_upload_dir'            : app.config.get("ftp_upload_dir",  None),
-        'ftp_upload_site'           : app.config.get("ftp_upload_site",  None),
-        'datatypes_disable_auto'    : app.config.get_bool("datatypes_disable_auto",  False),
-        'toolbox'                   : app.toolbox.to_dict( trans, in_panel=False ),
-        'toolbox_in_panel'          : app.toolbox.to_dict( trans ),
-        'message_box_visible'       : app.config.message_box_visible,
-        'show_inactivity_warning'   : trans.user and ( ( trans.user.active is False ) and ( app.config.user_activation_on ) and ( app.config.inactivity_box_content is not None ) ),
-        'user_requests'             : bool( trans.user and ( trans.user.requests or app.security_agent.get_accessible_request_types( trans, trans.user ) ) )
+        'active_view'                   : 'analysis',
+        'params'                        : dict( trans.request.params ),
+        'brand'                         : app.config.get("brand", ""),
+        'nginx_upload_path'             : app.config.get("nginx_upload_path", h.url_for(controller='api', action='tools')),
+        'use_remote_user'               : app.config.use_remote_user,
+        'remote_user_logout_href'       : app.config.remote_user_logout_href,
+        'enable_cloud_launch'           : app.config.get_bool('enable_cloud_launch', False),
+        'lims_doc_url'                  : app.config.get("lims_doc_url", "https://usegalaxy.org/u/rkchak/p/sts"),
+        'biostar_url'                   : app.config.biostar_url,
+        'biostar_url_redirect'          : h.url_for( controller='biostar', action='biostar_redirect', qualified=True ),
+        'support_url'                   : app.config.get("support_url", "https://wiki.galaxyproject.org/Support"),
+        'search_url'                    : app.config.get("search_url", "http://galaxyproject.org/search/usegalaxy/"),
+        'mailing_lists'                 : app.config.get("mailing_lists", "https://wiki.galaxyproject.org/MailingLists"),
+        'screencasts_url'               : app.config.get("screencasts_url", "https://vimeo.com/galaxyproject"),
+        'wiki_url'                      : app.config.get("wiki_url", "https://wiki.galaxyproject.org/"),
+        'citation_url'                  : app.config.get("citation_url", "https://wiki.galaxyproject.org/CitingGalaxy"),
+        'terms_url'                     : app.config.get("terms_url", ""),
+        'allow_user_creation'           : app.config.allow_user_creation,
+        'logo_url'                      : h.url_for(app.config.get( 'logo_url', '/')),
+        'spinner_url'                   : h.url_for('/static/images/loading_small_white_bg.gif'),
+        'search_url'                    : h.url_for(controller='root', action='tool_search'),
+        'is_admin_user'                 : trans.user_is_admin(),
+        'ftp_upload_dir'                : app.config.get("ftp_upload_dir",  None),
+        'ftp_upload_site'               : app.config.get("ftp_upload_site",  None),
+        'datatypes_disable_auto'        : app.config.get_bool("datatypes_disable_auto",  False),
+        'toolbox'                       : app.toolbox.to_dict( trans, in_panel=False ),
+        'toolbox_in_panel'              : app.toolbox.to_dict( trans ),
+        'message_box_visible'           : app.config.message_box_visible,
+        'show_inactivity_warning'       : trans.user and ( ( trans.user.active is False ) and ( app.config.user_activation_on ) and ( app.config.inactivity_box_content is not None ) ),
+        'user_requests'                 : bool( trans.user and ( trans.user.requests or app.security_agent.get_accessible_request_types( trans, trans.user ) ) ),
+        'stored_workflow_menu_entries'  : []
     }
+    for m in trans.user.stored_workflow_menu_entries:
+        app_config[ 'stored_workflow_menu_entries' ].append({
+            'encoded_stored_workflow_id' : trans.security.encode_id( m.stored_workflow_id ),
+            'stored_workflow' : {
+                'name' : util.unicodify( m.stored_workflow.name )
+            }
+        })
 %>
 <script>
     require(['mvc/app/app-view'], function( App ){
@@ -48,4 +56,4 @@
             var app = new App( ${ h.dumps( app_config ) } );
         } );
     });
-</script>
+</script>
\ No newline at end of file