diff --git a/.circleci/config.yml b/.circleci/config.yml
index 7904c41fac3..a87c6269b74 100644
--- a/.circleci/config.yml
+++ b/.circleci/config.yml
@@ -135,6 +135,10 @@ jobs:
     <<: *set_workdir
     steps:
       - *restore_repo_cache
+      - run: sh scripts/common_startup.sh
+      - run: wget -q https://github.com/jmchilton/galaxy-downloads/raw/master/db_gx_rev_0127.sqlite
+      - run: mv db_gx_rev_0127.sqlite database/universe.sqlite
+      - run: sh manage_db.sh -c ./config/galaxy.yml.sample upgrade
       - *install_tox
       - run: tox -e py35-first_startup
   validate_test_tools:
diff --git a/doc/source/admin/python.md b/doc/source/admin/python.md
index 6209bebba8e..a8ef04c7669 100644
--- a/doc/source/admin/python.md
+++ b/doc/source/admin/python.md
@@ -21,8 +21,8 @@ If Galaxy complains about the version of Python you are using:
         1. Make sure a supported version of Python is installed.
         2. Verify that the Python interpreter you want to use is first in the
            output of `which -a python3 python` (or `which -a python` if you are
-           using Galaxy <=20.01). If this is not the case:
-           - If you are using Galaxy >= 20.05, just execute:
+           using Galaxy <=19.09). If this is not the case:
+           - If you are using Galaxy >= 20.01, just execute:
              `export GALAXY_PYTHON=/path/to/python`
            - If instead you are using an older version of Galaxy, you can
             manipulate your shell's `PATH` variable to place the correct version
@@ -36,7 +36,13 @@ If Galaxy complains about the version of Python you are using:
               % export PATH=~/galaxy-python:$PATH
               ```
 
-4. Start Galaxy again.
+4. Remove compiled mako templates when upgrading from Python 2:
+     ```sh
+     % rm -rf /path/to/galaxy/database/compiled_templates/
+     ```
+   These templated will be regenerated automatically when starting Galaxy.
+
+5. Start Galaxy again.
 
 N.B. If you have compiled your own Python interpreter from source, please ensure
 that the `ssl`, `sqlite3`, `curses` and `bz2` modules were built and can be
@@ -45,4 +51,3 @@ compilation process and are required by the Galaxy framework. If building on
 Linux, you may need to install the appropriate `-dev` packages for OpenSSL and
 Bzip2. You may also need to build Python with shared libraries
 (`--enable-shared`).
-
diff --git a/doc/source/releases/20.01.rst b/doc/source/releases/20.01.rst
new file mode 100644
index 00000000000..fffe8a32f5e
--- /dev/null
+++ b/doc/source/releases/20.01.rst
@@ -0,0 +1,789 @@
+
+.. to_doc
+
+20.01
+===============================
+
+.. announce_start
+
+Enhancements
+-------------------------------
+
+.. major_feature
+
+
+.. feature
+
+* CLI tools for installing/testing Docker and Singularity containers
+  (thanks to `@simonbray <https://github.com/simonbray>`__).
+  `Pull Request 7936`_
+* Markdown-based Galaxy Pages.
+  `Pull Request 8512`_
+* Make Masthead and workflow page screenreader friendly
+  `Pull Request 8700`_
+* Add data dialog input element to client form parameter list
+  `Pull Request 8774`_
+* Add has_size option
+  (thanks to `@simonbray <https://github.com/simonbray>`__).
+  `Pull Request 8852`_
+* Email notifications on job completion
+  `Pull Request 8948`_
+* Make tours reloadable
+  `Pull Request 9032`_
+* Add a config option to allow customizing the brand title
+  `Pull Request 9062`_
+* IT fixes and 3 new ITs
+  `Pull Request 9141`_
+* Remove GenomeSpace tools, OpenID, UI and requirements
+  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
+  `Pull Request 9363`_
+
+.. enhancement_tag_viz
+
+* Hyphy-vision fixes and updates.
+  `Pull Request 9384`_
+
+.. enhancement_tag_datatypes
+
+* Datatypes for MassSpec DIA dlib,elib
+  (thanks to `@jj-umn <https://github.com/jj-umn>`__).
+  `Pull Request 8657`_
+* Add bus as binary, remove extra datatype
+  (thanks to `@astrovsky01 <https://github.com/astrovsky01>`__).
+  `Pull Request 8705`_
+* remove dada2_derep data type
+  (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__).
+  `Pull Request 8902`_
+* Add new GROMACS datatypes: ndx, xvg, edr
+  (thanks to `@simonbray <https://github.com/simonbray>`__).
+  `Pull Request 8964`_
+* Add gff3.gz and gff3.bz2 datatypes
+  (thanks to `@FredericBGA <https://github.com/FredericBGA>`__).
+  `Pull Request 8967`_
+* Make mol2 visible
+  (thanks to `@galaxyproject <https://github.com/galaxyproject>`__).
+  `Pull Request 8995`_
+* Add a datatype subclass for CAT (Contig Annotation Tool)
+  (thanks to `@jj-umn <https://github.com/jj-umn>`__).
+  `Pull Request 9087`_
+* Add tabular.gz datatype and add embl to uploadable formats
+  `Pull Request 9293`_
+
+.. enhancement_tag_tools
+
+* Upgrade askomics interactive tool
+  (thanks to `@xgaia <https://github.com/xgaia>`__).
+  `Pull Request 8517`_
+* Remove collection ID character restriction from 'Relabel collection from file' tool
+  (thanks to `@brinkmanlab <https://github.com/brinkmanlab>`__).
+  `Pull Request 8571`_
+* Allow space, dot and comma in relabel identifier tool
+  `Pull Request 8757`_
+* Fix script shebangs
+  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
+  `Pull Request 8888`_
+* Allow admins to import tools/workflows from paths.
+  `Pull Request 9003`_
+* Move sam_pileup to GALAXY_LIB_TOOLS_VERSIONED
+  `Pull Request 9320`_
+
+.. enhancement_tag_workflows
+
+* Interactive modification of invocation report.
+  `Pull Request 8691`_
+* User-facing Workflow Invocation Grid
+  `Pull Request 8699`_
+* PDF Export of Galaxy Markdown
+  `Pull Request 8893`_
+* Refactor some workflow editor plumbing to VueJS
+  `Pull Request 8931`_
+* Track non-history content outputs.
+  `Pull Request 9009`_
+* Default format 2 workflows to be downloaded as YAML.
+  `Pull Request 9023`_
+* Even Richer Workflow Inputs
+  `Pull Request 9086`_
+* Separate Markdown Validation into its own module.
+  `Pull Request 9099`_
+* add option select_type_workflow_threshold (rebase)
+  `Pull Request 9105`_
+
+.. enhancement_tag_ui
+
+* Upgrade eslint (major version), fix compliance with new standard rules.
+  `Pull Request 8708`_
+* JobMetrics.vue unit test.
+  `Pull Request 8732`_
+* Fix the flexible Data Dialog to work independent of the page layout initialization hooks.
+  `Pull Request 8744`_
+* axios-mock-adapter for cleaner, more expansive testing
+  `Pull Request 8749`_
+* Added client-side application configs for each target environment
+  `Pull Request 8827`_
+
+.. enhancement_tag_jobs
+
+* Small cleanup for job runners kill
+  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
+  `Pull Request 8523`_
+* Improvements to Galaxy and Pulsar job execution
+  `Pull Request 8625`_
+* Allow assigning UUID job ids with Pulsar in MQ mode.
+  `Pull Request 8718`_
+* Do not re-compute job input_ext/dbkey in job finish.
+  `Pull Request 8910`_
+* Implement extended job metadata collection
+  `Pull Request 8930`_
+* Move Jobs updated time display logic to client.
+  `Pull Request 8943`_
+* Implement extended job metadata collection + fixes
+  `Pull Request 8984`_
+* Place version output file in a writable directory for containerized jobs.
+  `Pull Request 8997`_
+* Fix deletion of outputs and working before job
+  `Pull Request 9245`_
+* Mount tool_data_path (ro) when running containerized tools
+  `Pull Request 9314`_
+* Allow remote jobs to configure Interactive Tool entry points.
+  `Pull Request 9349`_
+
+.. enhancement_tag_admin
+
+* Add Tool Manager Component for Admin Panel
+  `Pull Request 8601`_
+* Add process ID to worker_process table
+  (thanks to `@selten <https://github.com/selten>`__).
+  `Pull Request 8972`_
+
+.. enhancement
+
+* Use official "login with" buttons for OIDC
+  (thanks to `@hexylena <https://github.com/hexylena>`__).
+  `Pull Request 8107`_, `Pull Request 9102`_
+* Add data types to docs.galaxyproject.org
+  (thanks to `@selten <https://github.com/selten>`__).
+  `Pull Request 8531`_
+* python-ldap python3 update and documentation change
+  (thanks to `@selten <https://github.com/selten>`__).
+  `Pull Request 8618`_
+* GitLab error reporting
+  (thanks to `@selten <https://github.com/selten>`__).
+  `Pull Request 8620`_
+* Extend the list of attributes to be reported.
+  `Pull Request 8661`_
+* Have CI ensure client PRs are formatted.
+  `Pull Request 8662`_
+* Add area/configuration label
+  `Pull Request 8665`_
+* Update BootstrapVue to 2.0.1
+  `Pull Request 8666`_
+* add .gitattributes file and normalize line endings to use LF in…
+  `Pull Request 8677`_
+* Improve CI reliability by annotating external resources.
+  `Pull Request 8678`_
+* Restrict `/api/histories/shared_with_me` to logged-in users
+  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
+  `Pull Request 8685`_
+* Automate path resolution for config options
+  `Pull Request 8689`_
+* Remove unused Docker Swarm options
+  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
+  `Pull Request 8690`_
+* LDAP search member of filter
+  (thanks to `@BioinformaticsPlatformWIV-ISP <https://github.com/BioinformaticsPlatformWIV-ISP>`__).
+  `Pull Request 8697`_
+* Rebuild and prettify config sample and doc
+  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
+  `Pull Request 8713`_
+* Update zh/locale.js
+  (thanks to `@shenweiyan <https://github.com/shenweiyan>`__).
+  `Pull Request 8725`_
+* Start using path_resolves_to; add integration tests
+  `Pull Request 8737`_
+* Significant overhaul to container+dependency management
+  `Pull Request 8741`_
+* Multi subdomains cookie support
+  (thanks to `@julozi <https://github.com/julozi>`__).
+  `Pull Request 8746`_
+* One test case to rule them all
+  `Pull Request 8793`_
+* Allow recording more performance statistics to statsd.
+  `Pull Request 8800`_
+* Add installation monitor popup to toolshed client
+  `Pull Request 8810`_
+* General server dependency updates (was/including catalina fix)
+  `Pull Request 8843`_
+* Add badge to indicate availability of a newer toolshed repository version
+  `Pull Request 8860`_
+* Add config options to integration test for abs path
+  `Pull Request 8862`_
+* Make message_box style and visible options reloadable
+  `Pull Request 8863`_
+* Remove 'area/cleanup', edit 'kind/refactoring'
+  `Pull Request 8874`_
+* Unpin bdbag.
+  `Pull Request 8883`_
+* Add separate knob for masthead colors
+  `Pull Request 8904`_
+* Refactor galaxy_install and required dependencies into Galaxy's namespace.
+  `Pull Request 8905`_
+* Enable interactivetools with other beta tools...
+  `Pull Request 8913`_
+* Simplify logo replacement, fix height and alignment
+  `Pull Request 8914`_
+* Simplify Python deps installation in `testing-base` Dockerfile
+  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
+  `Pull Request 8921`_
+* Config: drop redundant `template_cache` attribute
+  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
+  `Pull Request 8924`_
+* Enable secondary authorization
+  `Pull Request 8926`_
+* Set up a cache dir for pip when running tests with Docker
+  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
+  `Pull Request 8929`_
+* Add link for interactive tools
+  (thanks to `@anuprulez <https://github.com/anuprulez>`__).
+  `Pull Request 8936`_
+* Remove deprecated tool dependency scripts.
+  `Pull Request 8955`_
+* Remove tool shed API examples.
+  `Pull Request 8956`_
+* Remove script for migrating tools to the tool shed...
+  `Pull Request 8957`_
+* Move galaxy testing utilities into cleaner package structure.
+  `Pull Request 8960`_
+* Create packages for Galaxy tests and infrastructure.
+  `Pull Request 8962`_
+* Remove workflow support from tool shed.
+  `Pull Request 8978`_
+* Remove capsule feature from tool shed.
+  `Pull Request 8979`_
+* trim long ldda messages; improve fluid media css
+  `Pull Request 9000`_
+* Expose python version in api/config
+  (thanks to `@hexylena <https://github.com/hexylena>`__).
+  `Pull Request 9010`_
+* Hot module reloading using webpack-dev-server for client dev
+  `Pull Request 9029`_
+* when building ts index log parse errors at debug level
+  `Pull Request 9033`_
+* Update quickstart.rst
+  (thanks to `@galaxyproject <https://github.com/galaxyproject>`__).
+  `Pull Request 9044`_
+* Add Sergey Golitsynskiy to committers group
+  `Pull Request 9056`_
+* Update Mercurial to Py3-compatible v5.2, and all other deps
+  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
+  `Pull Request 9065`_
+* Automatically redirect to OIDC provider when only auth option
+  (thanks to `@machristie <https://github.com/machristie>`__).
+  `Pull Request 9115`_
+* Automatically use extended-base-image if necessary
+  `Pull Request 9116`_
+* Add HMR to client readme.
+  `Pull Request 9121`_
+* Add admin functionality to histories API
+  (thanks to `@thomcuddihy <https://github.com/thomcuddihy>`__).
+  `Pull Request 9124`_
+* Don't break generated reStructuredText and YAML on hyphens
+  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
+  `Pull Request 9128`_
+* mulled: use threading.Event in PrintProgress to avoid unnecessary wai…
+  `Pull Request 9163`_
+* Set Conda environment variables  when running biocontainers
+  `Pull Request 9170`_
+* Update my username
+  (thanks to `@hexylena <https://github.com/hexylena>`__).
+  `Pull Request 9195`_
+* Add base_image column to mulled-build-files
+  `Pull Request 9199`_
+* Allow passing conda_context to any_target_requires_extended_base
+  `Pull Request 9202`_
+* Backport 9175: Update galaxy.tool_util.cwl for latest changes in CWL branch.
+  `Pull Request 9210`_
+* Extended base annotation fixes
+  `Pull Request 9224`_
+* External auth login refinement
+  `Pull Request 9233`_
+* Fixes for IGV GEDA handling of genomes
+  `Pull Request 9413`_
+
+.. small_enhancement
+
+* Factor out yaml read/write from config_manage.py
+  `Pull Request 8509`_
+* Implementation of the workflow list as vue component
+  `Pull Request 8551`_
+* Refactor config loading
+  `Pull Request 8573`_
+* Change reloadable config + misc cleanup
+  `Pull Request 8600`_
+* Case-insensitive match user-supplied email when logging in
+  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
+  `Pull Request 8631`_
+* Modify schema defaults and their loading
+  `Pull Request 8639`_
+* Replace resolve_path() with os.path.join()
+  `Pull Request 8646`_
+* Simplify config code (minor edits)
+  `Pull Request 8648`_
+* Refactor/cleanup config loading (misc edits)
+  `Pull Request 8651`_
+* Remove unused Tags file since it was converted to a Vue component
+  `Pull Request 8722`_
+* Update slot syntax to v-slot across the board.
+  `Pull Request 8730`_
+* Remove deprecated Toolshed API endpoints
+  `Pull Request 8734`_
+* Client build process refinement
+  `Pull Request 8742`_
+* Add vue component and endpoint to reset repository metadata
+  `Pull Request 8754`_
+* Cleanup SQL query in ``_calculate_or_set_disk_usage()``
+  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
+  `Pull Request 8776`_
+* Drop DetachedInstanceError workaround
+  `Pull Request 8785`_
+* Simplify code for expand_meta_parameters
+  (thanks to `@qiagu <https://github.com/qiagu>`__).
+  `Pull Request 8794`_
+* Convert User Preferences page to Vue Component
+  `Pull Request 8803`_
+* client-side current user store module
+  `Pull Request 8813`_
+* Refactor database_connection config loading
+  `Pull Request 8855`_
+* Refactor default_locale config option; test
+  `Pull Request 8856`_
+* Refactor infrastructure_url/port values; fix tests
+  `Pull Request 8857`_
+* Refactor pretty-datatime_format config loading
+  `Pull Request 8858`_
+* Fix misc. integration tests for config values
+  `Pull Request 8859`_
+* Do not specify None as default in dict.get()
+  `Pull Request 8865`_
+* Delete 'resolve path' integration tests
+  `Pull Request 8870`_
+* Do not raise Exception to manage control flow
+  `Pull Request 8876`_
+* Eliminate interactive debugging middleware
+  `Pull Request 8877`_
+* Normalize myexperiment_target_url / myexperiment_url
+  `Pull Request 8882`_
+* Do not override schema defaults if they exist
+  `Pull Request 8884`_
+* Use schema defaults in galaxy masthead
+  `Pull Request 8885`_
+* Cleanup config loading (minor fixes)
+  `Pull Request 8890`_
+* Refactor _set_config_base; fix config_dir value
+  `Pull Request 8915`_
+* Library tags tweaks and tests
+  `Pull Request 8947`_
+* Refactor Toolshed webapp into tool_shed package.
+  `Pull Request 8949`_
+* Separate Shed and Galaxy makos, package shed makos.
+  `Pull Request 8958`_
+* Remove admin tool shed controller code (Part 1)
+  `Pull Request 8988`_
+* Remove unused helper code from twilltestcase.
+  `Pull Request 8989`_
+* Fix tool image loading (was broken due to failing repo dir resolution)
+  `Pull Request 9006`_
+* Convert Custom builds vue
+  `Pull Request 9016`_
+* Implement datasets grid as vue component
+  `Pull Request 9018`_
+* remove unused toolshed template code
+  `Pull Request 9084`_
+* Default the authnz_manager to None
+  `Pull Request 9117`_
+* Update github username @erasche to @hexylena and correct inconsistencies
+  (thanks to `@hexylena <https://github.com/hexylena>`__).
+  `Pull Request 9194`_
+* Add requirements, fix legacy tools and move them out of GALAXY_LIB_TOOLS_UNVERSIONED
+  `Pull Request 9336`_
+* Add requirements to (almost) all converters, profile and minor fixes
+  `Pull Request 9345`_
+
+
+Fixes
+-------------------------------
+
+.. major_bug
+
+
+.. bug_tag_viz
+
+* Wrap SQL statement in a text() function as required by sqlalchemy
+  (thanks to `@kaukrise <https://github.com/kaukrise>`__).
+  `Pull Request 9216`_
+* Ensure visible overflow on navbar container
+  (thanks to `@kaukrise <https://github.com/kaukrise>`__).
+  `Pull Request 9217`_
+* Various python 3 fixes from sentry
+  `Pull Request 9337`_
+
+.. bug_tag_datatypes
+
+* Fix cool sniffing on python3
+  `Pull Request 9153`_
+* Fix `SearchGuiArchive.set_meta()`
+  (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__).
+  `Pull Request 9437`_
+
+.. bug_tag_tools
+
+* grouping: strip newlines
+  (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__).
+  `Pull Request 8953`_
+* Add requirements to interval_to_bed_converter.xml
+  `Pull Request 9041`_
+* Fix version in which ``sam_pileup`` was fixed
+  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
+  `Pull Request 9350`_
+* Expunge tool shed repository objects, prevents ParentInstanceDetachedError
+  `Pull Request 9354`_
+* Fix maf tools
+  `Pull Request 9393`_
+
+.. bug_tag_workflows
+
+* Exports reports with workflows (if configured).
+  `Pull Request 9055`_
+* Rev gxformat2 dependency to fix various export issues.
+  `Pull Request 9075`_
+* Fix workflow editor save as functionality
+  `Pull Request 9315`_
+* Various fixes and enhancements to reports
+  `Pull Request 9316`_
+
+.. bug_tag_jobs
+
+* Small fixes for k8s.
+  `Pull Request 8759`_
+* Fix output.file_path writing to read-only path on Docker
+  `Pull Request 9048`_
+* Add job home to writable paths
+  `Pull Request 9051`_
+* Fix LocalShell returncode
+  `Pull Request 9171`_
+* Fix: Added support for specifying k8s job pod priority class
+  (thanks to `@nuwang <https://github.com/nuwang>`__).
+  `Pull Request 9219`_
+* Fix: Added support for specifying k8s job affinity and tolerations
+  (thanks to `@nuwang <https://github.com/nuwang>`__).
+  `Pull Request 9225`_
+* Mount job_working_directory/configs rw
+  `Pull Request 9234`_
+* Limit async hack to async tools
+  `Pull Request 9242`_
+* Fix moving of data manager output for entries
+  `Pull Request 9243`_
+* python3 fixes for setups using drmaa and realuser setups
+  (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__).
+  `Pull Request 9246`_, `Pull Request 9253`_
+* Email notifications aren't used from just workflow steps anymore.
+  `Pull Request 9276`_
+* Use requests for slots instead of limit
+  (thanks to `@nuwang <https://github.com/nuwang>`__).
+  `Pull Request 9322`_
+* Make set metadata exec after process more robust
+  `Pull Request 9395`_
+* Make dataset discovery respect final_job_state
+  `Pull Request 9406`_
+* Strip unicode null characters from traceback and job_messages
+  `Pull Request 9430`_
+
+.. bug_tag_admin
+
+* Encode lines in filter_file_fields
+  (thanks to `@selten <https://github.com/selten>`__).
+  `Pull Request 8652`_
+* Git error reporting - bug fixes and better error handling
+  (thanks to `@selten <https://github.com/selten>`__).
+  `Pull Request 8900`_
+* Assorted admin panel fixes
+  `Pull Request 9097`_
+* Run integration tests on github, fix various bugs (interactive tools, kubernetes, test framework)
+  `Pull Request 9193`_
+* Always add shed_tool_config file to tool_configs
+  `Pull Request 9364`_
+
+.. bug
+
+* Documentation update
+  (thanks to `@selten <https://github.com/selten>`__).
+  `Pull Request 8508`_
+* Asynchronous data source: unable to create the file
+  (thanks to `@FredericBGA <https://github.com/FredericBGA>`__).
+  `Pull Request 8515`_
+* OIDC config patch
+  (thanks to `@almahmoud <https://github.com/almahmoud>`__).
+  `Pull Request 8572`_
+* set uwsgi umask default
+  (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__).
+  `Pull Request 8581`_
+* Fix `test_validate_simple_config` unit test
+  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
+  `Pull Request 8632`_
+* Fix a bug that occurs while installing a data manager.
+  (thanks to `@selten <https://github.com/selten>`__).
+  `Pull Request 8634`_
+* Fix bug in build_dependency_manager()
+  `Pull Request 8660`_
+* Get rid of fix timeout in admin app Selenium test.
+  `Pull Request 8667`_
+* More robust login/logout with Selenium.
+  `Pull Request 8676`_
+* Fixes for BootstrapVue Tables
+  `Pull Request 8684`_
+* More bootstrap vue upgrade fixes.
+  `Pull Request 8692`_
+* GRT: Ensure correct encoding, no partial lines
+  (thanks to `@hexylena <https://github.com/hexylena>`__).
+  `Pull Request 8712`_
+* Revise toolshed config dependency check error message in repository install manager
+  `Pull Request 8720`_
+* Fix data dialog height, modal test case and table slots
+  `Pull Request 8724`_
+* Do not overwrite existing attributes
+  `Pull Request 8728`_
+* Replace hardcoded configuration
+  `Pull Request 8731`_
+* Fix `new_secure_hash()` when passed an empty string
+  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
+  `Pull Request 8739`_
+* data_manager_conf.xml.sample is missing
+  (thanks to `@lecorguille <https://github.com/lecorguille>`__).
+  `Pull Request 8784`_
+* Revert "[19.09] Fix detached parent instance error in 8769"
+  (thanks to `@galaxyproject <https://github.com/galaxyproject>`__).
+  `Pull Request 8791`_
+* Handles k8s job recently created with no status set yet
+  (thanks to `@pcm32 <https://github.com/pcm32>`__).
+  `Pull Request 8799`_
+* Add postcss-loader and autoprefixer dependencies
+  `Pull Request 8821`_
+* LDAP fixes
+  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
+  `Pull Request 8823`_
+* Ensure app.config.config_file is an absolute path
+  `Pull Request 8836`_
+* Fix rare bug in config loading + add unit test
+  `Pull Request 8837`_
+* fix plugin name
+  (thanks to `@gmauro <https://github.com/gmauro>`__).
+  `Pull Request 8840`_
+* Restore portlet section style for repeat blocks
+  `Pull Request 8864`_
+* Prevent potential bug in config loading; test
+  `Pull Request 8866`_
+* Fix authnz manager's oidc config parsing for python3
+  `Pull Request 8871`_
+* Update check_py3_compatibility script for new ack versions.
+  `Pull Request 8872`_
+* If config_file is None, use cwd, not its parent
+  `Pull Request 8894`_
+* Log LDAP authenticate exceptions at the right level
+  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
+  `Pull Request 8907`_
+* make pgcleanup also delete HDAs
+  (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__).
+  `Pull Request 8908`_
+* Fix unbounded variable error in `GET /api/datasets/{encoded_dataset_id}` exception handling
+  `Pull Request 8935`_
+* Set `deleted` attribute of history datasets when purging histories from grid
+  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
+  `Pull Request 8940`_
+* Fix default logo path in configuration manager
+  `Pull Request 8941`_
+* Fix API decorator order
+  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
+  `Pull Request 9015`_
+* do not use var from inner scope
+  `Pull Request 9026`_
+* escape double hyphen in IT sample config, making it valid XML
+  `Pull Request 9034`_
+* Fix input parameter comparisons
+  `Pull Request 9047`_
+* Restore casting a boolean param to str when comparing with one
+  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
+  `Pull Request 9052`_
+* Fix comparison if parameter is optional and value is not provided
+  `Pull Request 9054`_
+* Small refactor of ``InputValueWrapper`` comparison methods
+  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
+  `Pull Request 9059`_
+* Add create_time to the signature of Repository constructor.
+  `Pull Request 9063`_
+* Listify value for multiple SelectToolParameterWrapper
+  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
+  `Pull Request 9067`_
+* Use newer psycopg2 conditional requirement for wheels on 3.7
+  `Pull Request 9068`_
+* Fix mulled version comparison
+  `Pull Request 9078`_
+* linter: accept outputs with auto_format only
+  (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__).
+  `Pull Request 9081`_
+* Create temporary files for cgi.FieldsStorage with delete=False
+  `Pull Request 9082`_
+* Fix importing a directory from user_library_import_dir
+  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
+  `Pull Request 9090`_
+* Make callbacks for tour and config watchers a control task
+  `Pull Request 9092`_
+* Don't watch tool files through watchdog
+  `Pull Request 9094`_
+* Allow html in registration warning message.
+  `Pull Request 9098`_
+* Admin job info display fix
+  `Pull Request 9120`_
+* Client build readme followup
+  `Pull Request 9122`_
+* Fix mulled cache/data locations, rebuild schema
+  `Pull Request 9125`_
+* More fixes for publishing decomposed packages.
+  `Pull Request 9126`_
+* fix url for workflow sharing
+  `Pull Request 9132`_
+* Add click prevent to workflow list dropdowns
+  `Pull Request 9133`_
+* Remove legacy admin panel entry for installation monitor, fix typo
+  `Pull Request 9134`_
+* Parse brand label option in legacy mako
+  `Pull Request 9136`_
+* Restore returning "None" when casting unselected multiselect param to str
+  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
+  `Pull Request 9144`_
+* Misc fixes
+  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
+  `Pull Request 9145`_
+* Add implementation of `parse_interactivetool` to `CwlToolSource` class
+  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
+  `Pull Request 9146`_
+* Fix optional unset integer and float params
+  `Pull Request 9149`_
+* Assorted OIDC fixes
+  `Pull Request 9150`_
+* Cast to None for optional params if not comparing strings
+  `Pull Request 9156`_
+* Ensure that users have a private role before login
+  `Pull Request 9168`_
+* Add static-safe mapping to config management
+  `Pull Request 9179`_
+* Fix tool shed tests for `#9168 <https://github.com/galaxyproject/galaxy/issues/9168>`__.
+  `Pull Request 9182`_
+* Add require_login bypass for entire authnz controller.
+  `Pull Request 9192`_
+* Fix runtime error in ToolConfWatcher
+  `Pull Request 9212`_
+* Fix extended base for singularity and add base_image_for_targets
+  `Pull Request 9215`_
+* More mulled-build-files fixes
+  `Pull Request 9228`_
+* Fix mailto hrefs in menus
+  `Pull Request 9232`_
+* Move meme_fimo out of unversioned lib tools
+  `Pull Request 9237`_
+* Fallback to binary download if header lies about content encoding
+  `Pull Request 9239`_
+* Fix lint warning string formatting
+  `Pull Request 9240`_
+* Fix unselected select parameter comparison to empty string
+  `Pull Request 9260`_
+* Fix iteritems use in build_from_current_history.mako
+  `Pull Request 9266`_
+* Fix suffix for single target mulled builds
+  `Pull Request 9267`_
+* backport 9268: Fix target_str_to_targets
+  `Pull Request 9269`_
+* Backwards compatible build number parsing
+  `Pull Request 9278`_
+* Tag display fixes for ui-select.
+  `Pull Request 9281`_
+* Python3: don't check for has_key attribute
+  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
+  `Pull Request 9290`_
+* Prevent caching of bootstrapped client data
+  `Pull Request 9294`_
+* Add build_sites_config_file option to config_schema
+  `Pull Request 9297`_
+* Backport reports config/py3 fix
+  `Pull Request 9309`_
+* Python3: unicodify the output of ``subprocess.check_output()``
+  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
+  `Pull Request 9319`_
+* Fix reports disk usage query for python 3
+  `Pull Request 9321`_
+* Fix string module use
+  `Pull Request 9327`_
+* Fix Python 3 error in containers lib
+  `Pull Request 9329`_
+* Fix use of next() as a meethod instead of a function
+  `Pull Request 9330`_
+* Automatically resolve and add static-safe mappings for client-based images
+  `Pull Request 9331`_
+* Various doc fixes
+  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
+  `Pull Request 9334`_
+* Fix app reference in guess_shed_config
+  `Pull Request 9339`_
+* Make linters more robust on python 3
+  `Pull Request 9348`_
+* Use RenamedTemporaryFile for safer integrated_tool_panel_file writing
+  `Pull Request 9359`_
+* Only get non-deleted datasets when listing custom dbkeys
+  `Pull Request 9360`_
+* Prevent duplicate listing of doi link and link (text, with href doi link)
+  `Pull Request 9366`_
+* Styleguide fixes
+  `Pull Request 9367`_
+* Prevent tool execution getting stuck in history when a chromInfo data…
+  `Pull Request 9385`_
+* Move migrated_tools_conf > mutable_config_dir (`#9376 <https://github.com/galaxyproject/galaxy/issues/9376>`__)
+  `Pull Request 9388`_
+* Fix dependency for CONVERTER_tar_to_directory
+  `Pull Request 9389`_
+* Fix for qp method used in GEDAs.
+  `Pull Request 9391`_
+* Fix hid comparison failing with hdas without hid
+  `Pull Request 9398`_
+* Don't raise exception if anon goes to <galaxy_url>/user/resend_verification
+  `Pull Request 9404`_
+* Update bleach to 3.1.1
+  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
+  `Pull Request 9408`_
+* Fix shed image resolution
+  `Pull Request 9411`_
+* Fixes for get_estimated_display_viewport
+  `Pull Request 9415`_
+* Fix wrong map use in many places
+  `Pull Request 9416`_
+* Conda startup fixes
+  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
+  `Pull Request 9421`_
+* fix two cases of opening a file binary
+  (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__).
+  `Pull Request 9424`_
+* Remove '.sample' from default value; rebuild schema
+  `Pull Request 9427`_
+* Fix login to accounts using different email capitalization
+  `Pull Request 9432`_
+* Fix TwoBitFile handle not opened in binary mode
+  `Pull Request 9433`_
+* Fix uploading workflow archives
+  `Pull Request 9434`_
+* Fix to_dict for upload1 tool
+  `Pull Request 9441`_
+* Fix data tables vue display
+  `Pull Request 9442`_
+* Fix `UserManager.get_reset_token()` after `#9432 <https://github.com/galaxyproject/galaxy/issues/9432>`__
+  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
+  `Pull Request 9446`_
+
+.. include:: 20.01_prs.rst
+
diff --git a/doc/source/releases/20.01_announce.rst b/doc/source/releases/20.01_announce.rst
index 2c7a6a98ff5..cc8ff3f0c7a 100644
--- a/doc/source/releases/20.01_announce.rst
+++ b/doc/source/releases/20.01_announce.rst
@@ -3,8 +3,77 @@
 January 2020 Galaxy Release (v 20.01)
 ===========================================================
 
+.. include:: _header.rst
 
-Schedule
+Highlights
 ===========================================================
- * Planned Freeze Date: 2020-01-06
- * Planned Release Date: 2020-01-27
+
+**Enhanced workflow functionality**
+  Workflows can now make use of optional datasets and optional parameters,
+  optional parameter default values and dataset inputs can now be restricted to
+  user-defined datatypes. The workflow editor and execution engine have been
+  enhanced to allow defining options to choose from, and these options can be
+  connected to compatible text, integer, float, color and select tool parameters
+  for more flexible and universally re-usable workflows (`Pull Request 9086`_).
+
+**Major update to container and dependency management interface**
+  The manage dependencies interface has been ported to vue.js and displays
+  additional information about installed, missing and available dependencies
+  and conveniently summarizes dependency status for all installed tools.
+  Additionally the user interface now displays whether a `Biocontainers <https://biocontainers.pro/#/registry>`__ image
+  is available at `quay.io <https://quay.io>`__ (`Pull Request 8741`_).
+
+**Extended job metadata collection**
+  Creating Job metadata has been reworked so that the dataset transfer that
+  occurs after a Galaxy job can be initiated by the compute node that runs a
+  Galaxy job. Previously the transfer was often done by Galaxy. Offloading this
+  task to the compute node should allow handling many more jobs in parallel. This
+  work will also make jobs running on remote compute resources much more
+  efficient if the remote resources can write to Galaxy's object store. To
+  benefit from this new metadata setting Galaxy needs to use object stores that
+  use uuids for storing datasets and set the ``metadata_strategy`` configuration
+  value to ``extended``. This feature is in beta testing, but work is ongoing to
+  mix existing object store configuration and choose the most efficient way of
+  transfering datasets automatically (`Pull Request 8930`_ ).
+
+
+Also check out the `20.01 user release notes <https://docs.galaxyproject.org/en/release_20.01/releases/20.01_announce_user.html>`__
+
+Get Galaxy
+==========
+
+The code lives at `GitHub <https://github.com/galaxyproject/galaxy>`__ and you should have `Git <https://git-scm.com/>`__ to obtain it.
+
+To get a new Galaxy repository run:
+  .. code-block:: shell
+
+      $ git clone -b release_20.01 https://github.com/galaxyproject/galaxy.git
+
+To update an existing Galaxy repository run:
+  .. code-block:: shell
+
+      $ git fetch origin && git checkout release_20.01 && git pull --ff-only origin release_20.01
+
+See the `community hub <https://galaxyproject.org/develop/source-code/>`__ for additional details regarding the source code locations.
+
+Updates to Tools and Converters in the Galaxy distribution
+==========================================================
+
+Many tools and Converters have been updated in the 20.01 release.
+As a consequence deployers need to install dependencies for these in the
+Admin Menu -> Manage Dependencies.
+
+Deprecation Notice
+==================
+
+With the release of Galaxy 20.01 we strongly encourage all deployers to run Galaxy under Python 3.
+For instructions on how to transition to Python 3 please see `here <https://docs.galaxyproject.org/en/release_20.01/admin/python.html>`__.
+
+
+Release Notes
+===========================================================
+
+.. include:: 20.01.rst
+   :start-after: announce_start
+
+.. include:: _thanks.rst
diff --git a/doc/source/releases/20.01_announce_user.rst b/doc/source/releases/20.01_announce_user.rst
new file mode 100644
index 00000000000..62da797d5e9
--- /dev/null
+++ b/doc/source/releases/20.01_announce_user.rst
@@ -0,0 +1,138 @@
+
+===========================================================
+January 2020 Galaxy Release (v 20.01)
+===========================================================
+
+.. include:: _header.rst
+
+Highlights
+===========================================================
+
+**Workflow Executions Menu**
+  This menu can be reached from the User menu -> Workflow Invocations
+  and lists your recent Workflow executions, their status and links
+  to the Workflow Editor and the History with the results of the
+  Workflow run.
+
+.. figure:: https://user-images.githubusercontent.com/216771/65520097-0a041f80-deb5-11e9-80ac-2557b36c252f.png
+   :alt: Workflow invocation menu
+   :width: 400px
+
+.. figure:: https://user-images.githubusercontent.com/6804901/73737075-345ac900-4742-11ea-9f50-0f0e4c3d9271.png
+   :alt: Workflow invocatios
+
+**Galay Markdown Pages and Workflow Reports as PDF**
+  An additional link has been added to Galaxy Markdown Pages and Workflow reports
+  that exports your document as a standalone PDF.
+
+.. figure:: https://user-images.githubusercontent.com/6804901/73776256-b7524280-4787-11ea-821f-d9a8c6339ee9.png
+   :alt: Example PDF export
+
+**Screenreader-friendly Navigation**
+  The top menu and the Workflow Editor have been improved for easier navigation
+  using Screenreaders and the Keyboard.
+  Thanks goes to `@WilliamHolden  <https://github.com/WilliamHolden>`__
+
+**Email-notification for completed jobs**
+  You can now select to be notified by email when a tool run has finished.
+  Thanks goes to `@astrovsky01 <https://github.com/astrovsky01>`__
+
+.. figure:: https://user-images.githubusercontent.com/6804901/73779180-a2c47900-478c-11ea-98ab-7355276b6f6d.png
+   :alt: Example of email button
+   :width: 300px
+
+New Visualizations
+===========================================================
+
+.. visualizations
+
+* Add data dialog input element to client form parameter list
+  `Pull Request 8774`_
+* Wrap SQL statement in a text() function as required by sqlalchemy
+  (thanks to `@kaukrise <https://github.com/kaukrise>`__).
+  `Pull Request 9216`_
+* Ensure visible overflow on navbar container
+  (thanks to `@kaukrise <https://github.com/kaukrise>`__).
+  `Pull Request 9217`_
+
+New Datatypes
+===========================================================
+
+.. datatypes
+
+* Datatypes for MassSpec DIA dlib,elib
+  (thanks to `@jj-umn <https://github.com/jj-umn>`__).
+  `Pull Request 8657`_
+* Add bus as binary, remove extra datatype
+  (thanks to `@astrovsky01 <https://github.com/astrovsky01>`__).
+  `Pull Request 8705`_
+* remove dada2_derep data type
+  (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__).
+  `Pull Request 8902`_
+* Add new GROMACS datatypes: ndx, xvg, edr
+  (thanks to `@simonbray <https://github.com/simonbray>`__).
+  `Pull Request 8964`_
+* add gff3.gz and gff3.bz2 datatypes
+  (thanks to `@FredericBGA <https://github.com/FredericBGA>`__).
+  `Pull Request 8967`_
+* Make mol2 visible
+  (thanks to `@galaxyproject <https://github.com/galaxyproject>`__).
+  `Pull Request 8995`_
+* Add a datatype subclass for CAT (Contig Annotation Tool)
+  (thanks to `@jj-umn <https://github.com/jj-umn>`__).
+  `Pull Request 9087`_
+* Fix cool sniffing on python3
+  `Pull Request 9153`_
+* Allow tabular.gz / add embl to uploadable formats
+  `Pull Request 9293`_
+
+Builtin Tool Updates
+===========================================================
+
+.. tools
+
+* Upgrade askomics interactive tool
+  (thanks to `@xgaia <https://github.com/xgaia>`__).
+  `Pull Request 8517`_
+* Remove collection ID character restriction from 'Relabel collection from file' tool
+  (thanks to `@brinkmanlab <https://github.com/brinkmanlab>`__).
+  `Pull Request 8571`_
+* Allow space, dot and comma in relabel identifier tool
+  `Pull Request 8757`_
+* Fix script shebangs
+  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
+  `Pull Request 8888`_
+* grouping: strip newlines
+  (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__).
+  `Pull Request 8953`_
+* Allow admins to import tools/workflows from paths.
+  `Pull Request 9003`_
+* Add requirements to interval_to_bed_converter.xml
+  `Pull Request 9041`_
+* Move sam_pileup to GALAXY_LIB_TOOLS_VERSIONED
+  `Pull Request 9320`_
+* Add requirements, fix legacy tools and move them out of GALAXY_LIB_TOOLS_UNVERSIONED
+  `Pull Request 9336`_
+* Add requirements to (almost) all converters, profile and minor fixes
+  `Pull Request 9345`_
+* Fix version in which ``sam_pileup`` was fixed
+  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
+  `Pull Request 9350`_
+* Expunge tool shed repository objects, prevents ParentInstanceDetachedError
+  `Pull Request 9354`_
+* Remove GenomeSpace tools, OpenID, UI and requirements
+  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
+  `Pull Request 9363`_
+* Fix maf tools
+  `Pull Request 9393`_
+* XML fix for joiner.xml.
+  `Pull Request 9399`_
+
+Release Notes
+===========================================================
+
+Please see the `full release notes <20.01_announce.html>`_ for more details.
+
+.. include:: 20.01_prs.rst
+
+.. include:: _thanks.rst
diff --git a/doc/source/releases/20.01_prs.rst b/doc/source/releases/20.01_prs.rst
new file mode 100644
index 00000000000..0a6d9e4ee35
--- /dev/null
+++ b/doc/source/releases/20.01_prs.rst
@@ -0,0 +1,343 @@
+
+.. github_links
+.. _Pull Request 7936: https://github.com/galaxyproject/galaxy/pull/7936
+.. _Pull Request 8107: https://github.com/galaxyproject/galaxy/pull/8107
+.. _Pull Request 8508: https://github.com/galaxyproject/galaxy/pull/8508
+.. _Pull Request 8509: https://github.com/galaxyproject/galaxy/pull/8509
+.. _Pull Request 8512: https://github.com/galaxyproject/galaxy/pull/8512
+.. _Pull Request 8515: https://github.com/galaxyproject/galaxy/pull/8515
+.. _Pull Request 8517: https://github.com/galaxyproject/galaxy/pull/8517
+.. _Pull Request 8523: https://github.com/galaxyproject/galaxy/pull/8523
+.. _Pull Request 8531: https://github.com/galaxyproject/galaxy/pull/8531
+.. _Pull Request 8551: https://github.com/galaxyproject/galaxy/pull/8551
+.. _Pull Request 8571: https://github.com/galaxyproject/galaxy/pull/8571
+.. _Pull Request 8572: https://github.com/galaxyproject/galaxy/pull/8572
+.. _Pull Request 8573: https://github.com/galaxyproject/galaxy/pull/8573
+.. _Pull Request 8581: https://github.com/galaxyproject/galaxy/pull/8581
+.. _Pull Request 8600: https://github.com/galaxyproject/galaxy/pull/8600
+.. _Pull Request 8601: https://github.com/galaxyproject/galaxy/pull/8601
+.. _Pull Request 8618: https://github.com/galaxyproject/galaxy/pull/8618
+.. _Pull Request 8620: https://github.com/galaxyproject/galaxy/pull/8620
+.. _Pull Request 8625: https://github.com/galaxyproject/galaxy/pull/8625
+.. _Pull Request 8631: https://github.com/galaxyproject/galaxy/pull/8631
+.. _Pull Request 8632: https://github.com/galaxyproject/galaxy/pull/8632
+.. _Pull Request 8634: https://github.com/galaxyproject/galaxy/pull/8634
+.. _Pull Request 8639: https://github.com/galaxyproject/galaxy/pull/8639
+.. _Pull Request 8646: https://github.com/galaxyproject/galaxy/pull/8646
+.. _Pull Request 8648: https://github.com/galaxyproject/galaxy/pull/8648
+.. _Pull Request 8651: https://github.com/galaxyproject/galaxy/pull/8651
+.. _Pull Request 8652: https://github.com/galaxyproject/galaxy/pull/8652
+.. _Pull Request 8657: https://github.com/galaxyproject/galaxy/pull/8657
+.. _Pull Request 8660: https://github.com/galaxyproject/galaxy/pull/8660
+.. _Pull Request 8661: https://github.com/galaxyproject/galaxy/pull/8661
+.. _Pull Request 8662: https://github.com/galaxyproject/galaxy/pull/8662
+.. _Pull Request 8665: https://github.com/galaxyproject/galaxy/pull/8665
+.. _Pull Request 8666: https://github.com/galaxyproject/galaxy/pull/8666
+.. _Pull Request 8667: https://github.com/galaxyproject/galaxy/pull/8667
+.. _Pull Request 8676: https://github.com/galaxyproject/galaxy/pull/8676
+.. _Pull Request 8677: https://github.com/galaxyproject/galaxy/pull/8677
+.. _Pull Request 8678: https://github.com/galaxyproject/galaxy/pull/8678
+.. _Pull Request 8684: https://github.com/galaxyproject/galaxy/pull/8684
+.. _Pull Request 8685: https://github.com/galaxyproject/galaxy/pull/8685
+.. _Pull Request 8689: https://github.com/galaxyproject/galaxy/pull/8689
+.. _Pull Request 8690: https://github.com/galaxyproject/galaxy/pull/8690
+.. _Pull Request 8691: https://github.com/galaxyproject/galaxy/pull/8691
+.. _Pull Request 8692: https://github.com/galaxyproject/galaxy/pull/8692
+.. _Pull Request 8694: https://github.com/galaxyproject/galaxy/pull/8694
+.. _Pull Request 8697: https://github.com/galaxyproject/galaxy/pull/8697
+.. _Pull Request 8699: https://github.com/galaxyproject/galaxy/pull/8699
+.. _Pull Request 8700: https://github.com/galaxyproject/galaxy/pull/8700
+.. _Pull Request 8705: https://github.com/galaxyproject/galaxy/pull/8705
+.. _Pull Request 8708: https://github.com/galaxyproject/galaxy/pull/8708
+.. _Pull Request 8709: https://github.com/galaxyproject/galaxy/pull/8709
+.. _Pull Request 8712: https://github.com/galaxyproject/galaxy/pull/8712
+.. _Pull Request 8713: https://github.com/galaxyproject/galaxy/pull/8713
+.. _Pull Request 8718: https://github.com/galaxyproject/galaxy/pull/8718
+.. _Pull Request 8720: https://github.com/galaxyproject/galaxy/pull/8720
+.. _Pull Request 8722: https://github.com/galaxyproject/galaxy/pull/8722
+.. _Pull Request 8724: https://github.com/galaxyproject/galaxy/pull/8724
+.. _Pull Request 8725: https://github.com/galaxyproject/galaxy/pull/8725
+.. _Pull Request 8726: https://github.com/galaxyproject/galaxy/pull/8726
+.. _Pull Request 8728: https://github.com/galaxyproject/galaxy/pull/8728
+.. _Pull Request 8730: https://github.com/galaxyproject/galaxy/pull/8730
+.. _Pull Request 8731: https://github.com/galaxyproject/galaxy/pull/8731
+.. _Pull Request 8732: https://github.com/galaxyproject/galaxy/pull/8732
+.. _Pull Request 8734: https://github.com/galaxyproject/galaxy/pull/8734
+.. _Pull Request 8735: https://github.com/galaxyproject/galaxy/pull/8735
+.. _Pull Request 8737: https://github.com/galaxyproject/galaxy/pull/8737
+.. _Pull Request 8739: https://github.com/galaxyproject/galaxy/pull/8739
+.. _Pull Request 8741: https://github.com/galaxyproject/galaxy/pull/8741
+.. _Pull Request 8742: https://github.com/galaxyproject/galaxy/pull/8742
+.. _Pull Request 8744: https://github.com/galaxyproject/galaxy/pull/8744
+.. _Pull Request 8746: https://github.com/galaxyproject/galaxy/pull/8746
+.. _Pull Request 8749: https://github.com/galaxyproject/galaxy/pull/8749
+.. _Pull Request 8754: https://github.com/galaxyproject/galaxy/pull/8754
+.. _Pull Request 8757: https://github.com/galaxyproject/galaxy/pull/8757
+.. _Pull Request 8759: https://github.com/galaxyproject/galaxy/pull/8759
+.. _Pull Request 8762: https://github.com/galaxyproject/galaxy/pull/8762
+.. _Pull Request 8774: https://github.com/galaxyproject/galaxy/pull/8774
+.. _Pull Request 8776: https://github.com/galaxyproject/galaxy/pull/8776
+.. _Pull Request 8784: https://github.com/galaxyproject/galaxy/pull/8784
+.. _Pull Request 8785: https://github.com/galaxyproject/galaxy/pull/8785
+.. _Pull Request 8791: https://github.com/galaxyproject/galaxy/pull/8791
+.. _Pull Request 8793: https://github.com/galaxyproject/galaxy/pull/8793
+.. _Pull Request 8794: https://github.com/galaxyproject/galaxy/pull/8794
+.. _Pull Request 8799: https://github.com/galaxyproject/galaxy/pull/8799
+.. _Pull Request 8800: https://github.com/galaxyproject/galaxy/pull/8800
+.. _Pull Request 8803: https://github.com/galaxyproject/galaxy/pull/8803
+.. _Pull Request 8810: https://github.com/galaxyproject/galaxy/pull/8810
+.. _Pull Request 8813: https://github.com/galaxyproject/galaxy/pull/8813
+.. _Pull Request 8821: https://github.com/galaxyproject/galaxy/pull/8821
+.. _Pull Request 8823: https://github.com/galaxyproject/galaxy/pull/8823
+.. _Pull Request 8827: https://github.com/galaxyproject/galaxy/pull/8827
+.. _Pull Request 8836: https://github.com/galaxyproject/galaxy/pull/8836
+.. _Pull Request 8837: https://github.com/galaxyproject/galaxy/pull/8837
+.. _Pull Request 8839: https://github.com/galaxyproject/galaxy/pull/8839
+.. _Pull Request 8840: https://github.com/galaxyproject/galaxy/pull/8840
+.. _Pull Request 8843: https://github.com/galaxyproject/galaxy/pull/8843
+.. _Pull Request 8852: https://github.com/galaxyproject/galaxy/pull/8852
+.. _Pull Request 8855: https://github.com/galaxyproject/galaxy/pull/8855
+.. _Pull Request 8856: https://github.com/galaxyproject/galaxy/pull/8856
+.. _Pull Request 8857: https://github.com/galaxyproject/galaxy/pull/8857
+.. _Pull Request 8858: https://github.com/galaxyproject/galaxy/pull/8858
+.. _Pull Request 8859: https://github.com/galaxyproject/galaxy/pull/8859
+.. _Pull Request 8860: https://github.com/galaxyproject/galaxy/pull/8860
+.. _Pull Request 8862: https://github.com/galaxyproject/galaxy/pull/8862
+.. _Pull Request 8863: https://github.com/galaxyproject/galaxy/pull/8863
+.. _Pull Request 8864: https://github.com/galaxyproject/galaxy/pull/8864
+.. _Pull Request 8865: https://github.com/galaxyproject/galaxy/pull/8865
+.. _Pull Request 8866: https://github.com/galaxyproject/galaxy/pull/8866
+.. _Pull Request 8870: https://github.com/galaxyproject/galaxy/pull/8870
+.. _Pull Request 8871: https://github.com/galaxyproject/galaxy/pull/8871
+.. _Pull Request 8872: https://github.com/galaxyproject/galaxy/pull/8872
+.. _Pull Request 8873: https://github.com/galaxyproject/galaxy/pull/8873
+.. _Pull Request 8874: https://github.com/galaxyproject/galaxy/pull/8874
+.. _Pull Request 8876: https://github.com/galaxyproject/galaxy/pull/8876
+.. _Pull Request 8877: https://github.com/galaxyproject/galaxy/pull/8877
+.. _Pull Request 8882: https://github.com/galaxyproject/galaxy/pull/8882
+.. _Pull Request 8883: https://github.com/galaxyproject/galaxy/pull/8883
+.. _Pull Request 8884: https://github.com/galaxyproject/galaxy/pull/8884
+.. _Pull Request 8885: https://github.com/galaxyproject/galaxy/pull/8885
+.. _Pull Request 8888: https://github.com/galaxyproject/galaxy/pull/8888
+.. _Pull Request 8890: https://github.com/galaxyproject/galaxy/pull/8890
+.. _Pull Request 8893: https://github.com/galaxyproject/galaxy/pull/8893
+.. _Pull Request 8894: https://github.com/galaxyproject/galaxy/pull/8894
+.. _Pull Request 8900: https://github.com/galaxyproject/galaxy/pull/8900
+.. _Pull Request 8902: https://github.com/galaxyproject/galaxy/pull/8902
+.. _Pull Request 8904: https://github.com/galaxyproject/galaxy/pull/8904
+.. _Pull Request 8905: https://github.com/galaxyproject/galaxy/pull/8905
+.. _Pull Request 8907: https://github.com/galaxyproject/galaxy/pull/8907
+.. _Pull Request 8908: https://github.com/galaxyproject/galaxy/pull/8908
+.. _Pull Request 8910: https://github.com/galaxyproject/galaxy/pull/8910
+.. _Pull Request 8913: https://github.com/galaxyproject/galaxy/pull/8913
+.. _Pull Request 8914: https://github.com/galaxyproject/galaxy/pull/8914
+.. _Pull Request 8915: https://github.com/galaxyproject/galaxy/pull/8915
+.. _Pull Request 8921: https://github.com/galaxyproject/galaxy/pull/8921
+.. _Pull Request 8922: https://github.com/galaxyproject/galaxy/pull/8922
+.. _Pull Request 8924: https://github.com/galaxyproject/galaxy/pull/8924
+.. _Pull Request 8926: https://github.com/galaxyproject/galaxy/pull/8926
+.. _Pull Request 8929: https://github.com/galaxyproject/galaxy/pull/8929
+.. _Pull Request 8930: https://github.com/galaxyproject/galaxy/pull/8930
+.. _Pull Request 8931: https://github.com/galaxyproject/galaxy/pull/8931
+.. _Pull Request 8935: https://github.com/galaxyproject/galaxy/pull/8935
+.. _Pull Request 8936: https://github.com/galaxyproject/galaxy/pull/8936
+.. _Pull Request 8940: https://github.com/galaxyproject/galaxy/pull/8940
+.. _Pull Request 8941: https://github.com/galaxyproject/galaxy/pull/8941
+.. _Pull Request 8943: https://github.com/galaxyproject/galaxy/pull/8943
+.. _Pull Request 8947: https://github.com/galaxyproject/galaxy/pull/8947
+.. _Pull Request 8948: https://github.com/galaxyproject/galaxy/pull/8948
+.. _Pull Request 8949: https://github.com/galaxyproject/galaxy/pull/8949
+.. _Pull Request 8953: https://github.com/galaxyproject/galaxy/pull/8953
+.. _Pull Request 8955: https://github.com/galaxyproject/galaxy/pull/8955
+.. _Pull Request 8956: https://github.com/galaxyproject/galaxy/pull/8956
+.. _Pull Request 8957: https://github.com/galaxyproject/galaxy/pull/8957
+.. _Pull Request 8958: https://github.com/galaxyproject/galaxy/pull/8958
+.. _Pull Request 8960: https://github.com/galaxyproject/galaxy/pull/8960
+.. _Pull Request 8962: https://github.com/galaxyproject/galaxy/pull/8962
+.. _Pull Request 8964: https://github.com/galaxyproject/galaxy/pull/8964
+.. _Pull Request 8967: https://github.com/galaxyproject/galaxy/pull/8967
+.. _Pull Request 8972: https://github.com/galaxyproject/galaxy/pull/8972
+.. _Pull Request 8978: https://github.com/galaxyproject/galaxy/pull/8978
+.. _Pull Request 8979: https://github.com/galaxyproject/galaxy/pull/8979
+.. _Pull Request 8984: https://github.com/galaxyproject/galaxy/pull/8984
+.. _Pull Request 8988: https://github.com/galaxyproject/galaxy/pull/8988
+.. _Pull Request 8989: https://github.com/galaxyproject/galaxy/pull/8989
+.. _Pull Request 8990: https://github.com/galaxyproject/galaxy/pull/8990
+.. _Pull Request 8991: https://github.com/galaxyproject/galaxy/pull/8991
+.. _Pull Request 8994: https://github.com/galaxyproject/galaxy/pull/8994
+.. _Pull Request 8995: https://github.com/galaxyproject/galaxy/pull/8995
+.. _Pull Request 8997: https://github.com/galaxyproject/galaxy/pull/8997
+.. _Pull Request 9000: https://github.com/galaxyproject/galaxy/pull/9000
+.. _Pull Request 9003: https://github.com/galaxyproject/galaxy/pull/9003
+.. _Pull Request 9006: https://github.com/galaxyproject/galaxy/pull/9006
+.. _Pull Request 9009: https://github.com/galaxyproject/galaxy/pull/9009
+.. _Pull Request 9010: https://github.com/galaxyproject/galaxy/pull/9010
+.. _Pull Request 9013: https://github.com/galaxyproject/galaxy/pull/9013
+.. _Pull Request 9015: https://github.com/galaxyproject/galaxy/pull/9015
+.. _Pull Request 9016: https://github.com/galaxyproject/galaxy/pull/9016
+.. _Pull Request 9018: https://github.com/galaxyproject/galaxy/pull/9018
+.. _Pull Request 9019: https://github.com/galaxyproject/galaxy/pull/9019
+.. _Pull Request 9023: https://github.com/galaxyproject/galaxy/pull/9023
+.. _Pull Request 9026: https://github.com/galaxyproject/galaxy/pull/9026
+.. _Pull Request 9029: https://github.com/galaxyproject/galaxy/pull/9029
+.. _Pull Request 9032: https://github.com/galaxyproject/galaxy/pull/9032
+.. _Pull Request 9033: https://github.com/galaxyproject/galaxy/pull/9033
+.. _Pull Request 9034: https://github.com/galaxyproject/galaxy/pull/9034
+.. _Pull Request 9041: https://github.com/galaxyproject/galaxy/pull/9041
+.. _Pull Request 9044: https://github.com/galaxyproject/galaxy/pull/9044
+.. _Pull Request 9047: https://github.com/galaxyproject/galaxy/pull/9047
+.. _Pull Request 9048: https://github.com/galaxyproject/galaxy/pull/9048
+.. _Pull Request 9051: https://github.com/galaxyproject/galaxy/pull/9051
+.. _Pull Request 9052: https://github.com/galaxyproject/galaxy/pull/9052
+.. _Pull Request 9054: https://github.com/galaxyproject/galaxy/pull/9054
+.. _Pull Request 9055: https://github.com/galaxyproject/galaxy/pull/9055
+.. _Pull Request 9056: https://github.com/galaxyproject/galaxy/pull/9056
+.. _Pull Request 9059: https://github.com/galaxyproject/galaxy/pull/9059
+.. _Pull Request 9062: https://github.com/galaxyproject/galaxy/pull/9062
+.. _Pull Request 9063: https://github.com/galaxyproject/galaxy/pull/9063
+.. _Pull Request 9064: https://github.com/galaxyproject/galaxy/pull/9064
+.. _Pull Request 9065: https://github.com/galaxyproject/galaxy/pull/9065
+.. _Pull Request 9067: https://github.com/galaxyproject/galaxy/pull/9067
+.. _Pull Request 9068: https://github.com/galaxyproject/galaxy/pull/9068
+.. _Pull Request 9075: https://github.com/galaxyproject/galaxy/pull/9075
+.. _Pull Request 9078: https://github.com/galaxyproject/galaxy/pull/9078
+.. _Pull Request 9081: https://github.com/galaxyproject/galaxy/pull/9081
+.. _Pull Request 9082: https://github.com/galaxyproject/galaxy/pull/9082
+.. _Pull Request 9084: https://github.com/galaxyproject/galaxy/pull/9084
+.. _Pull Request 9086: https://github.com/galaxyproject/galaxy/pull/9086
+.. _Pull Request 9087: https://github.com/galaxyproject/galaxy/pull/9087
+.. _Pull Request 9089: https://github.com/galaxyproject/galaxy/pull/9089
+.. _Pull Request 9090: https://github.com/galaxyproject/galaxy/pull/9090
+.. _Pull Request 9092: https://github.com/galaxyproject/galaxy/pull/9092
+.. _Pull Request 9094: https://github.com/galaxyproject/galaxy/pull/9094
+.. _Pull Request 9097: https://github.com/galaxyproject/galaxy/pull/9097
+.. _Pull Request 9098: https://github.com/galaxyproject/galaxy/pull/9098
+.. _Pull Request 9099: https://github.com/galaxyproject/galaxy/pull/9099
+.. _Pull Request 9102: https://github.com/galaxyproject/galaxy/pull/9102
+.. _Pull Request 9104: https://github.com/galaxyproject/galaxy/pull/9104
+.. _Pull Request 9105: https://github.com/galaxyproject/galaxy/pull/9105
+.. _Pull Request 9115: https://github.com/galaxyproject/galaxy/pull/9115
+.. _Pull Request 9116: https://github.com/galaxyproject/galaxy/pull/9116
+.. _Pull Request 9117: https://github.com/galaxyproject/galaxy/pull/9117
+.. _Pull Request 9120: https://github.com/galaxyproject/galaxy/pull/9120
+.. _Pull Request 9121: https://github.com/galaxyproject/galaxy/pull/9121
+.. _Pull Request 9122: https://github.com/galaxyproject/galaxy/pull/9122
+.. _Pull Request 9124: https://github.com/galaxyproject/galaxy/pull/9124
+.. _Pull Request 9125: https://github.com/galaxyproject/galaxy/pull/9125
+.. _Pull Request 9126: https://github.com/galaxyproject/galaxy/pull/9126
+.. _Pull Request 9128: https://github.com/galaxyproject/galaxy/pull/9128
+.. _Pull Request 9132: https://github.com/galaxyproject/galaxy/pull/9132
+.. _Pull Request 9133: https://github.com/galaxyproject/galaxy/pull/9133
+.. _Pull Request 9134: https://github.com/galaxyproject/galaxy/pull/9134
+.. _Pull Request 9136: https://github.com/galaxyproject/galaxy/pull/9136
+.. _Pull Request 9137: https://github.com/galaxyproject/galaxy/pull/9137
+.. _Pull Request 9141: https://github.com/galaxyproject/galaxy/pull/9141
+.. _Pull Request 9144: https://github.com/galaxyproject/galaxy/pull/9144
+.. _Pull Request 9145: https://github.com/galaxyproject/galaxy/pull/9145
+.. _Pull Request 9146: https://github.com/galaxyproject/galaxy/pull/9146
+.. _Pull Request 9149: https://github.com/galaxyproject/galaxy/pull/9149
+.. _Pull Request 9150: https://github.com/galaxyproject/galaxy/pull/9150
+.. _Pull Request 9153: https://github.com/galaxyproject/galaxy/pull/9153
+.. _Pull Request 9155: https://github.com/galaxyproject/galaxy/pull/9155
+.. _Pull Request 9156: https://github.com/galaxyproject/galaxy/pull/9156
+.. _Pull Request 9163: https://github.com/galaxyproject/galaxy/pull/9163
+.. _Pull Request 9168: https://github.com/galaxyproject/galaxy/pull/9168
+.. _Pull Request 9170: https://github.com/galaxyproject/galaxy/pull/9170
+.. _Pull Request 9171: https://github.com/galaxyproject/galaxy/pull/9171
+.. _Pull Request 9179: https://github.com/galaxyproject/galaxy/pull/9179
+.. _Pull Request 9182: https://github.com/galaxyproject/galaxy/pull/9182
+.. _Pull Request 9192: https://github.com/galaxyproject/galaxy/pull/9192
+.. _Pull Request 9193: https://github.com/galaxyproject/galaxy/pull/9193
+.. _Pull Request 9194: https://github.com/galaxyproject/galaxy/pull/9194
+.. _Pull Request 9195: https://github.com/galaxyproject/galaxy/pull/9195
+.. _Pull Request 9199: https://github.com/galaxyproject/galaxy/pull/9199
+.. _Pull Request 9202: https://github.com/galaxyproject/galaxy/pull/9202
+.. _Pull Request 9210: https://github.com/galaxyproject/galaxy/pull/9210
+.. _Pull Request 9212: https://github.com/galaxyproject/galaxy/pull/9212
+.. _Pull Request 9215: https://github.com/galaxyproject/galaxy/pull/9215
+.. _Pull Request 9216: https://github.com/galaxyproject/galaxy/pull/9216
+.. _Pull Request 9217: https://github.com/galaxyproject/galaxy/pull/9217
+.. _Pull Request 9219: https://github.com/galaxyproject/galaxy/pull/9219
+.. _Pull Request 9224: https://github.com/galaxyproject/galaxy/pull/9224
+.. _Pull Request 9225: https://github.com/galaxyproject/galaxy/pull/9225
+.. _Pull Request 9228: https://github.com/galaxyproject/galaxy/pull/9228
+.. _Pull Request 9232: https://github.com/galaxyproject/galaxy/pull/9232
+.. _Pull Request 9233: https://github.com/galaxyproject/galaxy/pull/9233
+.. _Pull Request 9234: https://github.com/galaxyproject/galaxy/pull/9234
+.. _Pull Request 9237: https://github.com/galaxyproject/galaxy/pull/9237
+.. _Pull Request 9239: https://github.com/galaxyproject/galaxy/pull/9239
+.. _Pull Request 9240: https://github.com/galaxyproject/galaxy/pull/9240
+.. _Pull Request 9242: https://github.com/galaxyproject/galaxy/pull/9242
+.. _Pull Request 9243: https://github.com/galaxyproject/galaxy/pull/9243
+.. _Pull Request 9245: https://github.com/galaxyproject/galaxy/pull/9245
+.. _Pull Request 9246: https://github.com/galaxyproject/galaxy/pull/9246
+.. _Pull Request 9253: https://github.com/galaxyproject/galaxy/pull/9253
+.. _Pull Request 9260: https://github.com/galaxyproject/galaxy/pull/9260
+.. _Pull Request 9263: https://github.com/galaxyproject/galaxy/pull/9263
+.. _Pull Request 9266: https://github.com/galaxyproject/galaxy/pull/9266
+.. _Pull Request 9267: https://github.com/galaxyproject/galaxy/pull/9267
+.. _Pull Request 9269: https://github.com/galaxyproject/galaxy/pull/9269
+.. _Pull Request 9276: https://github.com/galaxyproject/galaxy/pull/9276
+.. _Pull Request 9278: https://github.com/galaxyproject/galaxy/pull/9278
+.. _Pull Request 9281: https://github.com/galaxyproject/galaxy/pull/9281
+.. _Pull Request 9290: https://github.com/galaxyproject/galaxy/pull/9290
+.. _Pull Request 9293: https://github.com/galaxyproject/galaxy/pull/9293
+.. _Pull Request 9294: https://github.com/galaxyproject/galaxy/pull/9294
+.. _Pull Request 9297: https://github.com/galaxyproject/galaxy/pull/9297
+.. _Pull Request 9309: https://github.com/galaxyproject/galaxy/pull/9309
+.. _Pull Request 9314: https://github.com/galaxyproject/galaxy/pull/9314
+.. _Pull Request 9315: https://github.com/galaxyproject/galaxy/pull/9315
+.. _Pull Request 9316: https://github.com/galaxyproject/galaxy/pull/9316
+.. _Pull Request 9319: https://github.com/galaxyproject/galaxy/pull/9319
+.. _Pull Request 9320: https://github.com/galaxyproject/galaxy/pull/9320
+.. _Pull Request 9321: https://github.com/galaxyproject/galaxy/pull/9321
+.. _Pull Request 9322: https://github.com/galaxyproject/galaxy/pull/9322
+.. _Pull Request 9327: https://github.com/galaxyproject/galaxy/pull/9327
+.. _Pull Request 9329: https://github.com/galaxyproject/galaxy/pull/9329
+.. _Pull Request 9330: https://github.com/galaxyproject/galaxy/pull/9330
+.. _Pull Request 9331: https://github.com/galaxyproject/galaxy/pull/9331
+.. _Pull Request 9334: https://github.com/galaxyproject/galaxy/pull/9334
+.. _Pull Request 9336: https://github.com/galaxyproject/galaxy/pull/9336
+.. _Pull Request 9337: https://github.com/galaxyproject/galaxy/pull/9337
+.. _Pull Request 9339: https://github.com/galaxyproject/galaxy/pull/9339
+.. _Pull Request 9345: https://github.com/galaxyproject/galaxy/pull/9345
+.. _Pull Request 9348: https://github.com/galaxyproject/galaxy/pull/9348
+.. _Pull Request 9349: https://github.com/galaxyproject/galaxy/pull/9349
+.. _Pull Request 9350: https://github.com/galaxyproject/galaxy/pull/9350
+.. _Pull Request 9354: https://github.com/galaxyproject/galaxy/pull/9354
+.. _Pull Request 9359: https://github.com/galaxyproject/galaxy/pull/9359
+.. _Pull Request 9360: https://github.com/galaxyproject/galaxy/pull/9360
+.. _Pull Request 9363: https://github.com/galaxyproject/galaxy/pull/9363
+.. _Pull Request 9364: https://github.com/galaxyproject/galaxy/pull/9364
+.. _Pull Request 9366: https://github.com/galaxyproject/galaxy/pull/9366
+.. _Pull Request 9367: https://github.com/galaxyproject/galaxy/pull/9367
+.. _Pull Request 9375: https://github.com/galaxyproject/galaxy/pull/9375
+.. _Pull Request 9384: https://github.com/galaxyproject/galaxy/pull/9384
+.. _Pull Request 9385: https://github.com/galaxyproject/galaxy/pull/9385
+.. _Pull Request 9388: https://github.com/galaxyproject/galaxy/pull/9388
+.. _Pull Request 9389: https://github.com/galaxyproject/galaxy/pull/9389
+.. _Pull Request 9391: https://github.com/galaxyproject/galaxy/pull/9391
+.. _Pull Request 9393: https://github.com/galaxyproject/galaxy/pull/9393
+.. _Pull Request 9395: https://github.com/galaxyproject/galaxy/pull/9395
+.. _Pull Request 9397: https://github.com/galaxyproject/galaxy/pull/9397
+.. _Pull Request 9398: https://github.com/galaxyproject/galaxy/pull/9398
+.. _Pull Request 9399: https://github.com/galaxyproject/galaxy/pull/9399
+.. _Pull Request 9400: https://github.com/galaxyproject/galaxy/pull/9400
+.. _Pull Request 9404: https://github.com/galaxyproject/galaxy/pull/9404
+.. _Pull Request 9406: https://github.com/galaxyproject/galaxy/pull/9406
+.. _Pull Request 9408: https://github.com/galaxyproject/galaxy/pull/9408
+.. _Pull Request 9411: https://github.com/galaxyproject/galaxy/pull/9411
+.. _Pull Request 9413: https://github.com/galaxyproject/galaxy/pull/9413
+.. _Pull Request 9415: https://github.com/galaxyproject/galaxy/pull/9415
+.. _Pull Request 9416: https://github.com/galaxyproject/galaxy/pull/9416
+.. _Pull Request 9421: https://github.com/galaxyproject/galaxy/pull/9421
+.. _Pull Request 9424: https://github.com/galaxyproject/galaxy/pull/9424
+.. _Pull Request 9427: https://github.com/galaxyproject/galaxy/pull/9427
+.. _Pull Request 9430: https://github.com/galaxyproject/galaxy/pull/9430
+.. _Pull Request 9432: https://github.com/galaxyproject/galaxy/pull/9432
+.. _Pull Request 9433: https://github.com/galaxyproject/galaxy/pull/9433
+.. _Pull Request 9434: https://github.com/galaxyproject/galaxy/pull/9434
+.. _Pull Request 9437: https://github.com/galaxyproject/galaxy/pull/9437
+.. _Pull Request 9441: https://github.com/galaxyproject/galaxy/pull/9441
+.. _Pull Request 9442: https://github.com/galaxyproject/galaxy/pull/9442
+.. _Pull Request 9446: https://github.com/galaxyproject/galaxy/pull/9446
diff --git a/doc/source/releases/index.rst b/doc/source/releases/index.rst
index 98c88cbf52a..044163d7f08 100644
--- a/doc/source/releases/index.rst
+++ b/doc/source/releases/index.rst
@@ -4,6 +4,7 @@ Releases
 .. toctree::
    :maxdepth: 1
 
+   20.01_announce
    19.09_announce
    19.05_announce
    19.01_announce
diff --git a/lib/galaxy/dependencies/pipfiles/default/Pipfile b/lib/galaxy/dependencies/pipfiles/default/Pipfile
index 3c3ce61385a..67964f85612 100644
--- a/lib/galaxy/dependencies/pipfiles/default/Pipfile
+++ b/lib/galaxy/dependencies/pipfiles/default/Pipfile
@@ -13,7 +13,6 @@ gunicorn = "*"
 lxml = "!=4.2.2"
 mock = "*"
 NoseHTML = "*"
-pygithub3 = {version = "*", markers = "python_version < '3'"}
 pytest = "*"
 pytest-cov = "*"
 pytest-html = "*"
diff --git a/lib/galaxy/dependencies/pipfiles/default/pinned-dev-requirements.txt b/lib/galaxy/dependencies/pipfiles/default/pinned-dev-requirements.txt
index 5f918acdae7..1cba38deffc 100644
--- a/lib/galaxy/dependencies/pipfiles/default/pinned-dev-requirements.txt
+++ b/lib/galaxy/dependencies/pipfiles/default/pinned-dev-requirements.txt
@@ -33,7 +33,6 @@ pluggy==0.13.1
 port-for==0.4
 psutil==5.7.0
 py==1.8.1
-pygithub3==0.5.1 ; python_version < '3'
 pygments==2.5.2
 pyparsing==2.4.6
 pytest-cov==2.8.1
diff --git a/scripts/bootstrap_history.py b/scripts/bootstrap_history.py
index 41a170212bb..f20cacb6f60 100644
--- a/scripts/bootstrap_history.py
+++ b/scripts/bootstrap_history.py
@@ -6,6 +6,7 @@ from __future__ import print_function
 import calendar
 import datetime
 import json
+import logging
 import os
 import re
 import string
@@ -18,12 +19,14 @@ try:
 except ImportError:
     requests = None
 try:
-    from pygithub3 import Github
+    from github import Github
 except ImportError:
     Github = None
 from six import string_types
 from six.moves.urllib.parse import urljoin
 
+log = logging.getLogger(__name__)
+
 PROJECT_DIRECTORY = os.path.join(os.path.dirname(__file__), os.pardir)
 GALAXY_VERSION_FILE = os.path.join(PROJECT_DIRECTORY, "lib", "galaxy", "version.py")
 PROJECT_OWNER = "galaxyproject"
@@ -40,7 +43,7 @@ DEVTEAM = [
     "tnabtaf", "natefoo", "jgoecks",
     "guerler", "jennaj", "nekrut", "jxtx",
     "VJalili", "WilliamHolden", "Nerdinacan",
-    "ic4f",
+    "ic4f", "mvdbeek"
 ]
 
 TEMPLATE = """
@@ -350,7 +353,7 @@ def do_release(argv):
     template = template.replace(".. enhancement", "%s\n\n.. enhancement" % enhancement_targets)
     template = template.replace(".. bug", "%s\n\n.. bug" % bug_targets)
     release_info = string.Template(template).safe_substitute(release=release_name)
-    open(release_file, "w").write(release_info.encode("utf-8"))
+    open(release_file, "w").write(release_info)
     month = int(release_name.split(".")[1])
     month_name = calendar.month_name[month]
     year = release_name.split(".")[0]
@@ -379,7 +382,7 @@ def do_release(argv):
     next_release_file = _release_file(next_version + "_announce.rst")
 
     next_announce = NEXT_TEMPLATE.substitute(**next_version_params)
-    open(next_release_file, "w").write(next_announce.encode("utf-8"))
+    open(next_release_file, "w").write(next_announce)
     releases_index = _release_file("index.rst")
     releases_index_contents = _read_file(releases_index)
     releases_index_contents = releases_index_contents.replace(".. announcements\n", ".. announcements\n   " + next_version + "_announce\n")
@@ -471,29 +474,30 @@ def _release_dates(version):
     return freeze_date, release_date
 
 
-def _get_prs(release_name, state="closed"):
+def _get_prs(release_name, state="closed", pr_cache=[]):
     github = _github_client()
-    pull_requests = github.pull_requests.list(
+    repo = github.get_repo("%s/%s" % (PROJECT_OWNER, PROJECT_NAME))
+    add_to_cache = not pr_cache
+    pull_requests = pr_cache or repo.get_pulls(
         state=state,
-        user=PROJECT_OWNER,
-        repo=PROJECT_NAME,
     )
     reached_old_prs = False
 
-    for page in pull_requests:
+    for pr in pull_requests:
         if reached_old_prs:
             break
 
-        for pr in page:
-            if pr.created_at < datetime.datetime(2016, 11, 1, 0, 0):
-                reached_old_prs = True
-                pass
-            merged_at = pr.merged_at
-            milestone = pr.milestone
-            proper_state = state != "closed" or merged_at
-            if not proper_state or not milestone or milestone['title'] != release_name:
-                continue
-            yield pr
+        if pr.created_at < datetime.datetime(2018, 11, 1, 0, 0):
+            reached_old_prs = True
+            pass
+        merged_at = pr.merged_at
+        milestone = pr.milestone
+        proper_state = state != "closed" or merged_at
+        if not proper_state or not milestone or milestone.title != release_name:
+            continue
+        if add_to_cache:
+            pr_cache.append(pr)
+        yield pr
 
 
 def main(argv):
@@ -585,8 +589,8 @@ def main(argv):
     owner = None
     if ident.startswith("pr"):
         pull_request = ident[len("pr"):]
-        user = req["head"]["user"]
-        owner = user["login"]
+        user = req["head"].user
+        owner = user.login
         if owner in DEVTEAM:
             owner = None
         text = ".. _Pull Request {0}: {1}/pull/{0}".format(pull_request, PROJECT_URL)
@@ -615,7 +619,7 @@ def main(argv):
     to_doc = wrap(to_doc)
     if text_target is not None:
         history = extend_target(text_target, to_doc, history)
-    if req and 'labels' in req:
+    if req and req['labels']:
         labels = req['labels']
         if 'area/datatypes' in labels:
             user_announce = extend_target("datatypes", to_doc, user_announce)
@@ -630,12 +634,12 @@ def main(argv):
 
 def _read_file(path):
     with open(path, "r") as f:
-        return f.read().decode("utf-8")
+        return f.read()
 
 
 def _write_file(path, contents):
     with open(path, "w") as f:
-        f.write(contents.encode("utf-8"))
+        f.write(contents)
 
 
 def _text_target(github, pull_request, labels=None):
@@ -709,11 +713,13 @@ def _text_target(github, pull_request, labels=None):
     else:
         print("Logic problem, cannot determine section for %s" % _pr_to_str(pull_request))
         text_target = None
+    if text_target:
+        text_target += "\n"
     return text_target
 
 
 def _pr_to_labels(pr):
-    labels = [l["name"].lower() for l in pr.labels]
+    labels = [l.name.lower() for l in pr.labels]
     return labels
 
 
@@ -737,9 +743,12 @@ def _releases():
 
 def _github_client():
     try:
-        github_json = os.path.expanduser("~/.github.json")
-        github = Github(**json.load(open(github_json, "r")))
+        github_json_path = os.path.expanduser("~/.github.json")
+        with open(github_json_path, "r") as fh:
+            github_json_dict = json.load(fh)
+        github = Github(**github_json_dict)
     except Exception:
+        log.exception()
         github = None
     return github
 
@@ -770,7 +779,7 @@ def wrap(message):
     message = process_sentence(message)
     wrapper = textwrap.TextWrapper(initial_indent="* ")
     wrapper.subsequent_indent = '  '
-    wrapper.width = 78
+    wrapper.width = 160
     message_lines = message.splitlines()
     first_lines = "\n".join(wrapper.wrap(message_lines[0]))
     wrapper.initial_indent = "  "