diff --git a/static/operation_icons/gops_baseCoverage.gif b/static/operation_icons/gops_baseCoverage.gif new file mode 100644 index 00000000000..d038ef57fdf Binary files /dev/null and b/static/operation_icons/gops_baseCoverage.gif differ diff --git a/static/operation_icons/gops_clusterFind.gif b/static/operation_icons/gops_clusterFind.gif new file mode 100644 index 00000000000..05b5746e414 Binary files /dev/null and b/static/operation_icons/gops_clusterFind.gif differ diff --git a/static/operation_icons/gops_clusterMerge.gif b/static/operation_icons/gops_clusterMerge.gif new file mode 100644 index 00000000000..218bc18fc9a Binary files /dev/null and b/static/operation_icons/gops_clusterMerge.gif differ diff --git a/static/operation_icons/gops_complement.gif b/static/operation_icons/gops_complement.gif index 4b5e31d7d6d..7c09f9a8c6a 100644 Binary files a/static/operation_icons/gops_complement.gif and b/static/operation_icons/gops_complement.gif differ diff --git a/static/operation_icons/gops_concatenate.gif b/static/operation_icons/gops_concatenate.gif index 0600927cef9..e5db89010ff 100644 Binary files a/static/operation_icons/gops_concatenate.gif and b/static/operation_icons/gops_concatenate.gif differ diff --git a/static/operation_icons/gops_intersectOverlappingIntervals.gif b/static/operation_icons/gops_intersectOverlappingIntervals.gif new file mode 100644 index 00000000000..38d13ce6589 Binary files /dev/null and b/static/operation_icons/gops_intersectOverlappingIntervals.gif differ diff --git a/static/operation_icons/gops_intersectOverlappingPieces.gif b/static/operation_icons/gops_intersectOverlappingPieces.gif new file mode 100644 index 00000000000..703fed2c526 Binary files /dev/null and b/static/operation_icons/gops_intersectOverlappingPieces.gif differ diff --git a/static/operation_icons/gops_joinFullOuter.gif b/static/operation_icons/gops_joinFullOuter.gif new file mode 100644 index 00000000000..592b40b348d Binary files /dev/null and b/static/operation_icons/gops_joinFullOuter.gif differ diff --git a/static/operation_icons/gops_joinInner.gif b/static/operation_icons/gops_joinInner.gif new file mode 100644 index 00000000000..3eb1c5703ad Binary files /dev/null and b/static/operation_icons/gops_joinInner.gif differ diff --git a/static/operation_icons/gops_joinLeftOuter.gif b/static/operation_icons/gops_joinLeftOuter.gif new file mode 100644 index 00000000000..15be59c5f65 Binary files /dev/null and b/static/operation_icons/gops_joinLeftOuter.gif differ diff --git a/static/operation_icons/gops_joinRecordsList.gif b/static/operation_icons/gops_joinRecordsList.gif new file mode 100644 index 00000000000..4bbe33dffb4 Binary files /dev/null and b/static/operation_icons/gops_joinRecordsList.gif differ diff --git a/static/operation_icons/gops_joinRightOuter.gif b/static/operation_icons/gops_joinRightOuter.gif new file mode 100644 index 00000000000..81dc201c9fc Binary files /dev/null and b/static/operation_icons/gops_joinRightOuter.gif differ diff --git a/static/operation_icons/gops_merge.gif b/static/operation_icons/gops_merge.gif index 3e8a57e8709..1ce9810ef47 100644 Binary files a/static/operation_icons/gops_merge.gif and b/static/operation_icons/gops_merge.gif differ diff --git a/static/operation_icons/gops_subtractOverlappingIntervals.gif b/static/operation_icons/gops_subtractOverlappingIntervals.gif new file mode 100644 index 00000000000..43d6613367f Binary files /dev/null and b/static/operation_icons/gops_subtractOverlappingIntervals.gif differ diff --git a/static/operation_icons/gops_subtractOverlappingPieces.gif b/static/operation_icons/gops_subtractOverlappingPieces.gif new file mode 100644 index 00000000000..e7a1b3ed520 Binary files /dev/null and b/static/operation_icons/gops_subtractOverlappingPieces.gif differ diff --git a/tools/new_operations/basecoverage.xml b/tools/new_operations/basecoverage.xml index 5daf4aff402..9bbdd50d3b7 100644 --- a/tools/new_operations/basecoverage.xml +++ b/tools/new_operations/basecoverage.xml @@ -36,6 +36,10 @@ See Galaxy Interval Operation Screencasts_ (right click to open this link in ano .. _Screencasts: http://wiki.g2.bx.psu.edu/Learn/Interval%20Operations +**Example** + +.. image:: ./static/operation_icons/gops_baseCoverage.gif + - \ No newline at end of file + diff --git a/tools/new_operations/cluster.xml b/tools/new_operations/cluster.xml index 14029e8e814..06a88987d36 100644 --- a/tools/new_operations/cluster.xml +++ b/tools/new_operations/cluster.xml @@ -82,9 +82,15 @@ See Galaxy Interval Operation Screencasts_ (right click to open this link in ano ----- -**Example** +**Examples** -.. image:: ./static/operation_icons/gops_cluster.gif +Find Clusters: + +.. image:: ./static/operation_icons/gops_clusterFind.gif + +Merge Clusters: + +.. image:: ./static/operation_icons/gops_clusterMerge.gif - \ No newline at end of file + diff --git a/tools/new_operations/intersect.xml b/tools/new_operations/intersect.xml index c5ed66d00ad..75e3750f9f9 100644 --- a/tools/new_operations/intersect.xml +++ b/tools/new_operations/intersect.xml @@ -129,9 +129,15 @@ See Galaxy Interval Operation Screencasts_ (right click to open this link in ano ----- -**Example** +**Examples** -.. image:: ./static/operation_icons/gops_intersect.gif +Overlapping Intervals: + +.. image:: ./static/operation_icons/gops_intersectOverlappingIntervals.gif + +Overlapping Pieces of Intervals: + +.. image:: ./static/operation_icons/gops_intersectOverlappingPieces.gif - \ No newline at end of file + diff --git a/tools/new_operations/join.xml b/tools/new_operations/join.xml index c329378f613..257887342de 100644 --- a/tools/new_operations/join.xml +++ b/tools/new_operations/join.xml @@ -92,48 +92,26 @@ See Galaxy Interval Operation Screencasts_ (right click to open this link in ano ----- -**Example** +**Examples** -If **First dataset** is:: +.. image:: ./static/operation_icons/gops_joinRecordsList.gif - chr1 10 100 Query1.1 - chr1 500 1000 Query1.2 - chr1 1100 1250 Query1.3 +Only records that are joined (inner join): -and **Second dataset** is:: +.. image:: ./static/operation_icons/gops_joinInner.gif - chr1 20 80 Query2.1 - chr1 2000 2204 Query2.2 - chr1 2500 3000 Query2.3 +All records of first dataset: +.. image:: ./static/operation_icons/gops_joinLeftOuter.gif -The four return options will generate: +All records of second dataset: +.. image:: ./static/operation_icons/gops_joinRightOuter.gif -- **Return only records that are joined**:: +All records of both datasets: - chr1 10 100 Query1.1 chr1 20 80 Query2.1 +.. image:: ./static/operation_icons/gops_joinFullOuter.gif -- **Return all records of first dataset**:: - - chr1 10 100 Query1.1 chr1 20 80 Query2.1 - chr1 500 1000 Query1.2 . . . . - chr1 1100 1250 Query1.3 . . . . - -- **Return all records of second dataset**:: - - chr1 10 100 Query1.1 chr1 20 80 Query2.1 - . . . . chr1 2000 2204 Query2.2 - . . . . chr1 2500 3000 Query2.3 - -- **Return all records of both datasets**:: - - chr1 10 100 Query1.1 chr1 20 80 Query2.1 - chr1 500 1000 Query1.2 . . . . - chr1 1100 1250 Query1.3 . . . . - . . . . chr1 2000 2204 Query2.2 - . . . . chr1 2500 3000 Query2.3 - - \ No newline at end of file + diff --git a/tools/new_operations/subtract.xml b/tools/new_operations/subtract.xml index 709eb91737b..2aca5de5010 100644 --- a/tools/new_operations/subtract.xml +++ b/tools/new_operations/subtract.xml @@ -112,7 +112,13 @@ See Galaxy Interval Operation Screencasts_ (right click to open this link in ano **Example** -.. image:: ./static/operation_icons/gops_subtract.gif +Intervals with no overlap: + +.. image:: ./static/operation_icons/gops_subtractOverlappingIntervals.gif + +Non-overlapping pieces of intervals: + +.. image:: ./static/operation_icons/gops_subtractOverlappingPieces.gif - \ No newline at end of file +