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Add descriptions to dynamic options filters.

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This commit is contained in:
Daniel Blankenberg
2008-05-30 16:58:15 +00:00
parent d2f809f5da
commit 9b36a7ae0e
4 changed files with 94 additions and 47 deletions
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tools/filters/axt_to_concat_fasta.xml
+2 -12
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@@ -3,18 +3,8 @@
<command interpreter="python">axt_to_concat_fasta.py $dbkey_1 $dbkey_2 &lt; $axt_input &gt; $out_file1</command>
<inputs>
<param format="axt" name="axt_input" type="data" label="AXT file"/>
<param name="dbkey_1" type="select" label="Genome">
<options from_file="static/ucsc/builds.txt">
<column name="name" index="1"/>
<column name="value" index="0"/>
</options>
</param>
<param name="dbkey_2" type="select" label="Genome">
<options from_file="static/ucsc/builds.txt">
<column name="name" index="1"/>
<column name="value" index="0"/>
</options>
</param>
<param name="dbkey_1" type="genomebuild" label="Genome"/>
<param name="dbkey_2" type="genomebuild" label="Genome"/>
</inputs>
<outputs>
<data format="fasta" name="out_file1" />
tools/filters/axt_to_fasta.xml
+2 -12
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@@ -3,18 +3,8 @@
<command interpreter="python">axt_to_fasta.py $dbkey_1 $dbkey_2 &lt; $axt_input &gt; $out_file1</command>
<inputs>
<param format="axt" name="axt_input" type="data" label="AXT file"/>
<param name="dbkey_1" type="select" label="Genome">
<options from_file="static/ucsc/builds.txt">
<column name="name" index="1"/>
<column name="value" index="0"/>
</options>
</param>
<param name="dbkey_2" type="select" label="Genome">
<options from_file="static/ucsc/builds.txt">
<column name="name" index="1"/>
<column name="value" index="0"/>
</options>
</param>
<param name="dbkey_1" type="genomebuild" label="Genome"/>
<param name="dbkey_2" type="genomebuild" label="Genome"/>
</inputs>
<outputs>
<data format="fasta" name="out_file1" />
tools/filters/axt_to_lav.xml
+2 -12
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@@ -3,18 +3,8 @@
<command interpreter="python">axt_to_lav.py ${GALAXY_DATA_INDEX_DIR}/$dbkey_1/seq/%s.nib:$dbkey_1:./static/ucsc/chrom/${dbkey_1}.len ${GALAXY_DATA_INDEX_DIR}/$dbkey_2/seq/%s.nib:$dbkey_2:./static/ucsc/chrom/${dbkey_2}.len $align_input $lav_file $seq_file1 $seq_file2</command>
<inputs>
<param name="align_input" type="data" format="axt" label="Alignment File" optional="False"/>
<param name="dbkey_1" type="select" label="Genome">
<options from_file="static/ucsc/builds.txt">
<column name="name" index="1"/>
<column name="value" index="0"/>
</options>
</param>
<param name="dbkey_2" type="select" label="Genome">
<options from_file="static/ucsc/builds.txt">
<column name="name" index="1"/>
<column name="value" index="0"/>
</options>
</param>
<param name="dbkey_1" type="genomebuild" label="Genome"/>
<param name="dbkey_2" type="genomebuild" label="Genome"/>
</inputs>
<outputs>
<data name="lav_file" format="lav"/>