diff --git a/tools/evolution/codingSnps.pl b/tools/evolution/codingSnps.pl index 941ff73c7d0..0edb22f2038 100755 --- a/tools/evolution/codingSnps.pl +++ b/tools/evolution/codingSnps.pl @@ -564,6 +564,8 @@ sub getGalaxyInfo { if ($nibDir eq 'Galaxy') { print STDERR "Failed to find sequence directory in locfile $locFile\n"; } - $nibDir .= "/$build.2bit"; #we want full path and filename + # lparsons: allow specification of full filename in loc file for greater felxibility + unless ($nibDir =~ /(.*)\.2bit/) { $nibDir .= "/$build.2bit"; } + #$nibDir .= "/$build.2bit"; #we want full path and filename }