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Repack client.
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John Chilton
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define("mvc/collection/collection-view",["exports","mvc/list/list-view","mvc/collection/collection-model","mvc/collection/collection-li","mvc/base-mvc","utils/localization"],function(e,t,l,i,o,a){"use strict";function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(e,"__esModule",{value:!0});var n=s(t),c=(s(l),s(i)),d=s(o),r=s(a),p=n.default.ModelListPanel,f=p.extend({_logNamespace:"collections",className:p.prototype.className+" dataset-collection-panel",DatasetDCEViewClass:c.default.DatasetDCEListItemView,modelCollectionKey:"elements",initialize:function(e){p.prototype.initialize.call(this,e),this.linkTarget=e.linkTarget||"_blank",this.hasUser=e.hasUser,this.panelStack=[],this.parentName=e.parentName,this.foldoutStyle=e.foldoutStyle||"foldout",this.downloadUrl=Galaxy.root+"api/dataset_collections/"+this.model.attributes.id+"/download"},getNestedDCDCEViewClass:function(){return c.default.NestedDCDCEListItemView.extend({foldoutPanelClass:f})},_queueNewRender:function(e,t){t=void 0===t?this.fxSpeed:t;var l=this;l.log("_queueNewRender:",e,t),l._swapNewRender(e),l.trigger("rendered",l)},_filterCollection:function(){return this.model.getVisibleContents()},_getItemViewClass:function(e){switch(e.get("element_type")){case"hda":return this.DatasetDCEViewClass;case"dataset_collection":return this.getNestedDCDCEViewClass()}throw new TypeError("Unknown element type:",e.get("element_type"))},_getItemViewOptions:function(e){var t=p.prototype._getItemViewOptions.call(this,e);return _.extend(t,{linkTarget:this.linkTarget,hasUser:this.hasUser,foldoutStyle:this.foldoutStyle})},_setUpItemViewListeners:function(e){var t=this;return p.prototype._setUpItemViewListeners.call(t,e),t.listenTo(e,{"expanded:drilldown":function(e,t){this._expandDrilldownPanel(t)},"collapsed:drilldown":function(e,t){this._collapseDrilldownPanel(t)}}),this},_expandDrilldownPanel:function(e){this.panelStack.push(e),this.$("> .controls").add(this.$list()).hide(),e.parentName=this.model.get("name"),this.$el.append(e.render().$el)},_collapseDrilldownPanel:function(e){this.panelStack.pop(),this.render()},events:{"click .navigation .back":"close"},close:function(e){this.remove(),this.trigger("close")},toString:function(){return"CollectionView("+(this.model?this.model.get("name"):"")+")"}});f.prototype.templates=function(){var e=d.default.wrapTemplate(['<div class="controls">','<div class="navigation">','<a class="back" href="javascript:void(0)">','<span class="fa fa-icon fa-angle-left"></span>',(0,r.default)("Back to "),"<%- view.parentName %>","</a>","</div>",'<div class="title">','<div class="name"><%- collection.name || collection.element_identifier %></div>','<div class="subtitle">','<% if( collection.collection_type === "list" ){ %>',(0,r.default)("a list of datasets"),'<% } else if( collection.collection_type === "paired" ){ %>',(0,r.default)("a pair of datasets"),'<% } else if( collection.collection_type === "list:paired" ){ %>',(0,r.default)("a list of paired datasets"),'<% } else if( collection.collection_type === "list:list" ){ %>',(0,r.default)("a list of dataset lists"),"<% } %>","</div>","</div>",'<div class="tags-display"></div>','<div class="actions">','<a class="download-btn icon-btn" ','href="<%- view.downloadUrl %>','" title="" download="" data-original-title="Download Collection">','<span class="fa fa-floppy-o"></span>',"</a>","</div>","</div>"],"collection");return _.extend(_.clone(p.prototype.templates),{controls:e})}(),e.default={CollectionView:f}});
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define("mvc/collection/collection-view",["exports","mvc/list/list-view","mvc/collection/collection-model","mvc/collection/collection-li","mvc/base-mvc","utils/localization"],function(e,t,n,i,l,a){"use strict";function s(e){return e&&e.__esModule?e:{default:e}}function o(e){var t=e.get("collection_type");return"list"==t?(0,p.default)("list"):"paired"==t?(0,p.default)("dataset pair"):"list:paired"==t?(0,p.default)("list of pairs"):(0,p.default)("nested list")}function d(e){var t=e.get("element_count"),n="a "+o(e);if(t){var i;1==t?i="with 1 item":t&&(i="with "+t+" items"),n=n+" "+(0,p.default)(i)}return n}Object.defineProperty(e,"__esModule",{value:!0});var c=s(t),r=(s(n),s(i)),p=(s(l),s(a)),u=c.default.ModelListPanel,f=u.extend({_logNamespace:"collections",className:u.prototype.className+" dataset-collection-panel",DatasetDCEViewClass:r.default.DatasetDCEListItemView,modelCollectionKey:"elements",initialize:function(e){u.prototype.initialize.call(this,e),this.linkTarget=e.linkTarget||"_blank",this.hasUser=e.hasUser,this.panelStack=[],this.parentName=e.parentName,this.foldoutStyle=e.foldoutStyle||"foldout",this.downloadUrl=Galaxy.root+"api/dataset_collections/"+this.model.attributes.id+"/download"},getNestedDCDCEViewClass:function(){return r.default.NestedDCDCEListItemView.extend({foldoutPanelClass:f})},_queueNewRender:function(e,t){t=void 0===t?this.fxSpeed:t;var n=this;this.handleWarning(e),n.log("_queueNewRender:",e,t),n._swapNewRender(e),n.trigger("rendered",n)},handleWarning:function(e){var t=this.views.length,n=this.model.get("element_count");if(n&&n!==t){var i=(0,p.default)("displaying only "+t+" of "+n+" items");e.find(".elements-warning").html('<div class="warningmessagesmall">'+i+"</div>")}},_filterCollection:function(){return this.model.getVisibleContents()},_getItemViewClass:function(e){switch(e.get("element_type")){case"hda":return this.DatasetDCEViewClass;case"dataset_collection":return this.getNestedDCDCEViewClass()}throw new TypeError("Unknown element type:",e.get("element_type"))},_getItemViewOptions:function(e){var t=u.prototype._getItemViewOptions.call(this,e);return _.extend(t,{linkTarget:this.linkTarget,hasUser:this.hasUser,foldoutStyle:this.foldoutStyle})},_setUpItemViewListeners:function(e){var t=this;return u.prototype._setUpItemViewListeners.call(t,e),t.listenTo(e,{"expanded:drilldown":function(e,t){this._expandDrilldownPanel(t)},"collapsed:drilldown":function(e,t){this._collapseDrilldownPanel(t)}}),this},_expandDrilldownPanel:function(e){this.panelStack.push(e),this.$("> .controls").add(this.$list()).hide(),e.parentName=this.model.get("name"),this.$el.append(e.render().$el)},_collapseDrilldownPanel:function(e){this.panelStack.pop(),this.render()},events:{"click .navigation .back":"close"},close:function(e){this.remove(),this.trigger("close")},toString:function(){return"CollectionView("+(this.model?this.model.get("name"):"")+")"}});f.prototype.templates=_.extend(_.clone(u.prototype.templates),{controls:function(e,t){var n=d(t.model);return'\n <div class="controls">\n <div class="navigation">\n <a class="back" href="javascript:void(0)">\n <span class="fa fa-icon fa-angle-left"></span>\n '+(0,p.default)("Back to ")+"\n "+_.escape(t.parentName)+'\n </a>\n </div>\n <div class="title">\n <div class="name">'+(_.escape(e.name)||_.escape(e.element_identifier))+'</div>\n <div class="subtitle">\n '+n+'\n </div>\n </div>\n <div class="elements-warning">\n </div>\n <div class="tags-display"></div>\n <div class="actions">\n <a class="download-btn icon-btn" href="'+t.downloadUrl+'"\n title="" download="" data-original-title="Download Collection">\n <span class="fa fa-floppy-o"></span>\n </a>\n </div>\n </div>'}}),e.default={collectionTypeDescription:o,collectionDescription:d,CollectionView:f}});
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define("mvc/history/hdca-li",["exports","mvc/dataset/states","mvc/collection/collection-li","mvc/collection/collection-view","mvc/base-mvc","mvc/history/history-item-li","utils/localization"],function(t,e,s,n,i,a,r){"use strict";function o(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(t,"__esModule",{value:!0});var l=o(e),d=o(s),c=o(n),p=(o(i),o(a)),u=o(r),m=d.default.DCListItemView,h=m.extend({className:m.prototype.className+" history-content",_setUpListeners:function(){var t=this;m.prototype._setUpListeners.call(this);var e=function(e,s){t.render()};this.model.jobStatesSummary&&this.listenTo(this.model.jobStatesSummary,"change",e),this.listenTo(this.model,{"change:tags change:visible change:state":e})},_getFoldoutPanelClass:function(){return c.default.CollectionView},_swapNewRender:function(t){m.prototype._swapNewRender.call(this,t);var e,s=this.model.jobStatesSummary;e=s?s.new()?"loading":s.errored()?"error":s.terminal()?"ok":s.running()?"running":"queued":this.model.get("job_source_id")?"loading":this.model.get("populated_state")?l.default.OK:l.default.RUNNING,this.$el.addClass("state-"+e);var n=this.stateDescription();return this.$(".state-description").html(n),this.$el},stateDescription:function(){var t,e=this.model,s=e.get("element_count"),n=e.get("job_source_type"),i=this.model.get("collection_type");t="list"==i?"list":"paired"==i?"dataset pair":"list:paired"==i?"list of pairs":"nested list";var a="";1==s?a=" with 1 item":s&&(a=" with "+s+" items");var r=e.jobStatesSummary,o=""+t+a;if(n&&"Job"!=n){if(r&&r.hasDetails()){var l=r.new(),d=l?null:r.jobCount();if(l)return'\n <div class="progress state-progress">\n <span class="note">Creating jobs.<span class="blinking">..</span></span>\n <div class="progress-bar info" style="width:100%">\n </div>';if(r.errored())return"a "+t+" with "+r.numInError()+" / "+d+" jobs in error";if(r.terminal())return"a "+o;var c=r.states().running||0,p=(r.states().ok||0)/(1*d),u=c/(1*d),m=1-p-u;return'\n <div class="progress state-progress">\n <span class="note">'+(d&&d>1?d+" jobs":"a job")+" generating a "+t+'</span>\n <div class="progress-bar ok" style="width:'+100*p+'%"></div>\n <div class="progress-bar running" style="width:'+100*u+'%"></div>\n <div class="progress-bar new" style="width:'+100*m+'%">\n </div>'}return'\n <div class="progress state-progress">\n <span class="note">Loading job data for '+t+'.<span class="blinking">..</span></span>\n <div class="progress-bar info" style="width:100%">\n </div>'}return"a "+o},toString:function(){return"HDCAListItemView("+(this.model?""+this.model:"(no model)")+")"}});h.prototype.templates=function(){var t=_.extend({},m.prototype.templates.warnings,{hidden:function(t){t.visible||(0,u.default)("This collection has been hidden")}});return _.extend({},m.prototype.templates,{warnings:t,titleBar:function(t){return'\n <div class="title-bar clear" tabindex="0">\n <span class="state-icon"></span>\n <div class="title">\n <span class="hid">'+t.hid+'</span>\n <span class="name">'+_.escape(t.name)+'</span>\n </div>\n <div class="state-description">\n </div>\n '+p.default.nametagTemplate(t)+"\n </div>\n "}})}(),t.default={HDCAListItemView:h}});
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define("mvc/history/hdca-li",["exports","mvc/dataset/states","mvc/collection/collection-li","mvc/collection/collection-view","mvc/base-mvc","mvc/history/history-item-li","utils/localization"],function(e,t,s,n,i,a,o){"use strict";function r(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(e,"__esModule",{value:!0});var l=r(t),c=r(s),d=r(n),p=(r(i),r(a)),u=r(o),m=c.default.DCListItemView,h=m.extend({className:m.prototype.className+" history-content",_setUpListeners:function(){var e=this;m.prototype._setUpListeners.call(this);var t=function(t,s){e.render()};this.model.jobStatesSummary&&this.listenTo(this.model.jobStatesSummary,"change",t),this.listenTo(this.model,{"change:tags change:visible change:state":t})},_getFoldoutPanelClass:function(){return d.default.CollectionView},_swapNewRender:function(e){m.prototype._swapNewRender.call(this,e);var t,s=this.model.jobStatesSummary;t=s?s.new()?"loading":s.errored()?"error":s.terminal()?"ok":s.running()?"running":"queued":this.model.get("job_source_id")?"loading":this.model.get("populated_state")?l.default.OK:l.default.RUNNING,this.$el.addClass("state-"+t);var n=this.stateDescription();return this.$(".state-description").html(n),this.$el},stateDescription:function(){var e=this.model,t=(e.get("element_count"),e.get("job_source_type")),s=(this.model.get("collection_type"),d.default.collectionTypeDescription(e)),n=d.default.collectionDescription(e),i=e.jobStatesSummary;if(t&&"Job"!=t){if(i&&i.hasDetails()){var a=i.new(),o=a?null:i.jobCount();if(a)return'\n <div class="progress state-progress">\n <span class="note">Creating jobs.<span class="blinking">..</span></span>\n <div class="progress-bar info" style="width:100%">\n </div>';if(i.errored())return"a "+s+" with "+i.numInError()+" / "+o+" jobs in error";if(i.terminal())return n;var r=i.states().running||0,l=(i.states().ok||0)/(1*o),c=r/(1*o),p=1-l-c;return'\n <div class="progress state-progress">\n <span class="note">'+(o&&o>1?o+" jobs":"a job")+" generating a "+s+'</span>\n <div class="progress-bar ok" style="width:'+100*l+'%"></div>\n <div class="progress-bar running" style="width:'+100*c+'%"></div>\n <div class="progress-bar new" style="width:'+100*p+'%">\n </div>'}return'\n <div class="progress state-progress">\n <span class="note">Loading job data for '+s+'.<span class="blinking">..</span></span>\n <div class="progress-bar info" style="width:100%">\n </div>'}return n},toString:function(){return"HDCAListItemView("+(this.model?""+this.model:"(no model)")+")"}});h.prototype.templates=function(){var e=_.extend({},m.prototype.templates.warnings,{hidden:function(e){e.visible||(0,u.default)("This collection has been hidden")}});return _.extend({},m.prototype.templates,{warnings:e,titleBar:function(e){return'\n <div class="title-bar clear" tabindex="0">\n <span class="state-icon"></span>\n <div class="title">\n <span class="hid">'+e.hid+'</span>\n <span class="name">'+_.escape(e.name)+'</span>\n </div>\n <div class="state-description">\n </div>\n '+p.default.nametagTemplate(e)+"\n </div>\n "}})}(),e.default={HDCAListItemView:h}});
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define("mvc/history/history-content-model",["exports","mvc/dataset/states","mvc/base-mvc","utils/localization"],function(t,e,i,s){"use strict";function n(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(t,"__esModule",{value:!0});n(e),n(i),n(s);var r={defaults:{history_id:null,history_content_type:null,hid:null,visible:!0},idAttribute:"type_id",hidden:function(){return!this.get("visible")},isVisible:function(t,e){var i=!0;return t||!this.get("deleted")&&!this.get("purged")||(i=!1),e||this.get("visible")||(i=!1),i},urlRoot:Galaxy.root+"api/histories/",url:function(){var t=this.get("history_content_type"),e=this.get("history_id"),i=this.get("id"),s=""+this.urlRoot+e+"/contents/"+t+"s/"+i;return s},hide:function(t){return this.get("visible")?this.save({visible:!1},t):jQuery.when()},unhide:function(t){return this.get("visible")?jQuery.when():this.save({visible:!0},t)},toString:function(){return[this.get("type_id"),this.get("hid"),this.get("name")].join(":")}};t.default={HistoryContentMixin:r}});
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define("mvc/history/history-content-model",["exports","mvc/dataset/states","mvc/base-mvc","utils/localization"],function(t,e,i,n){"use strict";function s(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(t,"__esModule",{value:!0});s(e),s(i),s(n);var o=1e3;try{o=localStorage.getItem("collectionFuzzyCountDefault")||o}catch(t){}var r={defaults:{history_id:null,history_content_type:null,hid:null,visible:!0},idAttribute:"type_id",hidden:function(){return!this.get("visible")},isVisible:function(t,e){var i=!0;return t||!this.get("deleted")&&!this.get("purged")||(i=!1),e||this.get("visible")||(i=!1),i},urlRoot:Galaxy.root+"api/histories/",url:function(){var t=this.get("history_content_type"),e=this.get("history_id"),i=this.get("id"),n=""+this.urlRoot+e+"/contents/"+t+"s/"+i;return"dataset_collection"==t&&(n=n+"?view=element-reference&fuzzy_count="+o),n},hide:function(t){return this.get("visible")?this.save({visible:!1},t):jQuery.when()},unhide:function(t){return this.get("visible")?jQuery.when():this.save({visible:!0},t)},toString:function(){return[this.get("type_id"),this.get("hid"),this.get("name")].join(":")}};t.default={HistoryContentMixin:r}});
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