From 925f9cfb0ee95f57331aa34d7040abae0b133531 Mon Sep 17 00:00:00 2001 From: mvdbeek Date: Wed, 30 Sep 2020 12:43:50 +0200 Subject: [PATCH] Fix wiggle estimated_display_viewport Broken in https://github.com/galaxyproject/galaxy/pull/9415, where I used the wrong function name. Fixes https://sentry.galaxyproject.org/sentry/main/issues/568813/: ``` AttributeError: module 'galaxy.util' has no attribute 'iter_readline_count' File "galaxy/datatypes/interval.py", line 1092, in get_estimated_display_viewport for line in util.iter_readline_count(fh, VIEWPORT_READLINE_BUFFER_SIZE): ``` --- lib/galaxy/datatypes/interval.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lib/galaxy/datatypes/interval.py b/lib/galaxy/datatypes/interval.py index 449a0f4e174..57dd6877ac0 100644 --- a/lib/galaxy/datatypes/interval.py +++ b/lib/galaxy/datatypes/interval.py @@ -1089,7 +1089,7 @@ class Wiggle(Tabular, _RemoteCallMixin): span = 1 step = None with open(dataset.file_name) as fh: - for line in util.iter_readline_count(fh, VIEWPORT_READLINE_BUFFER_SIZE): + for line in util.iter_start_of_line(fh, VIEWPORT_READLINE_BUFFER_SIZE): try: if line.startswith("browser"): chr_info = line.rstrip('\n\r').split()[-1]