diff --git a/lib/galaxy/dependencies/dev-requirements.txt b/lib/galaxy/dependencies/dev-requirements.txt index 020f8958750..40b413679cb 100644 --- a/lib/galaxy/dependencies/dev-requirements.txt +++ b/lib/galaxy/dependencies/dev-requirements.txt @@ -2,12 +2,13 @@ aiohttp==3.8.4 ; python_version >= "3.7" and python_version < "3.12" aiosignal==1.3.1 ; python_version >= "3.7" and python_version < "3.12" alabaster==0.7.13 ; python_version >= "3.7" and python_version < "3.12" amqp==5.1.1 ; python_version >= "3.7" and python_version < "3.12" -anyio==3.6.2 ; python_version >= "3.7" and python_version < "3.12" +anyio==3.7.0 ; python_version >= "3.7" and python_version < "3.12" ase==3.22.1 ; python_version >= "3.7" and python_version < "3.12" async-generator==1.10 ; python_version >= "3.7" and python_version < "3.12" async-timeout==4.0.2 ; python_version >= "3.7" and python_version < "3.12" asynctest==0.13.0 ; python_version >= "3.7" and python_version < "3.8" attrs==23.1.0 ; python_version >= "3.7" and python_version < "3.12" +axe-selenium-python==2.1.6 ; python_version >= "3.7" and python_version < "3.12" babel==2.12.1 ; python_version >= "3.7" and python_version < "3.12" billiard==3.6.4.0 ; python_version >= "3.7" and python_version < "3.12" black==23.3.0 ; python_version >= "3.7" and python_version < "3.12" @@ -23,13 +24,13 @@ click-repl==0.2.0 ; python_version >= "3.7" and python_version < "3.12" click==8.1.3 ; python_version >= "3.7" and python_version < "3.12" codespell==2.2.4 ; python_version >= "3.7" and python_version < "3.12" colorama==0.4.6 ; python_version >= "3.7" and python_version < "3.12" and (sys_platform == "win32" or platform_system == "Windows") -coverage[toml]==7.2.6 ; python_version >= "3.7" and python_version < "3.12" +coverage[toml]==7.2.7 ; python_version >= "3.7" and python_version < "3.12" cryptography==40.0.2 ; python_version >= "3.7" and python_version < "3.12" -cwltest==2.3.20230108193615 ; python_version >= "3.7" and python_version < "3.12" +cwltest==2.3.20230527113600 ; python_version >= "3.7" and python_version < "3.12" cycler==0.11.0 ; python_version >= "3.7" and python_version < "3.12" darker==1.7.1 ; python_version >= "3.7" and python_version < "3.12" defusedxml==0.7.1 ; python_version >= "3.7" and python_version < "3.12" -deprecated==1.2.13 ; python_version >= "3.7" and python_version < "3.12" +deprecated==1.2.14 ; python_version >= "3.7" and python_version < "3.12" docutils==0.18.1 ; python_version >= "3.7" and python_version < "3.12" exceptiongroup==1.1.1 ; python_version >= "3.7" and python_version < "3.12" fluent-logger==0.10.0 ; python_version >= "3.7" and python_version < "3.12" @@ -91,7 +92,7 @@ pytest-cov==4.1.0 ; python_version >= "3.7" and python_version < "3.12" pytest-html==3.2.0 ; python_version >= "3.7" and python_version < "3.12" pytest-httpserver==1.0.6 ; python_version >= "3.7" and python_version < "3.12" pytest-json-report==1.5.0 ; python_version >= "3.7" and python_version < "3.12" -pytest-metadata==2.0.4 ; python_version >= "3.7" and python_version < "3.12" +pytest-metadata==3.0.0 ; python_version >= "3.7" and python_version < "3.12" pytest-mock==3.10.0 ; python_version >= "3.7" and python_version < "3.12" pytest-postgresql==4.1.1 ; python_version >= "3.7" and python_version < "3.12" pytest-shard==0.1.2 ; python_version >= "3.7" and python_version < "3.12" diff --git a/lib/galaxy/dependencies/pinned-requirements.txt b/lib/galaxy/dependencies/pinned-requirements.txt index 7f5fa44e718..fd544a73d1c 100644 --- a/lib/galaxy/dependencies/pinned-requirements.txt +++ b/lib/galaxy/dependencies/pinned-requirements.txt @@ -9,17 +9,15 @@ aioitertools==0.11.0 ; python_version >= "3.7" and python_version < "3.12" aiosignal==1.3.1 ; python_version >= "3.7" and python_version < "3.12" alembic==1.11.1 ; python_version >= "3.7" and python_version < "3.12" amqp==5.1.1 ; python_version >= "3.7" and python_version < "3.12" -anyio==3.6.2 ; python_version >= "3.7" and python_version < "3.12" +anyio==3.7.0 ; python_version >= "3.7" and python_version < "3.12" apispec==6.3.0 ; python_version >= "3.7" and python_version < "3.12" appdirs==1.4.4 ; python_version >= "3.7" and python_version < "3.12" arcp==0.2.1 ; python_version >= "3.7" and python_version < "3.12" argcomplete==3.0.8 ; python_version >= "3.7" and python_version < "3.12" -async-generator==1.10 ; python_version >= "3.7" and python_version < "3.12" async-timeout==4.0.2 ; python_version >= "3.7" and python_version < "3.12" asynctest==0.13.0 ; python_version >= "3.7" and python_version < "3.8" attmap==0.13.2 ; python_version >= "3.7" and python_version < "3.12" attrs==23.1.0 ; python_version >= "3.7" and python_version < "3.12" -axe-selenium-python==2.1.6 ; python_version >= "3.7" and python_version < "3.12" babel==2.12.1 ; python_version >= "3.7" and python_version < "3.12" bagit-profile==1.3.1 ; python_version >= "3.7" and python_version < "3.12" bagit==1.8.1 ; python_version >= "3.7" and python_version < "3.12" @@ -48,7 +46,7 @@ click-repl==0.2.0 ; python_version >= "3.7" and python_version < "3.12" click==8.1.3 ; python_version >= "3.7" and python_version < "3.12" cloudauthz==0.6.0 ; python_version >= "3.7" and python_version < "3.12" cloudbridge==3.1.0 ; python_version >= "3.7" and python_version < "3.12" -colorama==0.4.6 ; python_version >= "3.7" and python_version < "3.12" and (sys_platform == "win32" or platform_system == "Windows") +colorama==0.4.6 ; python_version >= "3.7" and python_version < "3.12" and platform_system == "Windows" coloredlogs==15.0.1 ; python_version >= "3.7" and python_version < "3.12" conda-package-streaming==0.8.0 ; python_version >= "3.7" and python_version < "3.12" cryptography==40.0.2 ; python_version >= "3.7" and python_version < "3.12" @@ -66,7 +64,7 @@ docutils==0.18.1 ; python_version >= "3.7" and python_version < "3.12" ecdsa==0.18.0 ; python_version >= "3.7" and python_version < "3.12" edam-ontology==1.25.2 ; python_version >= "3.7" and python_version < "3.12" email-validator==2.0.0.post2 ; python_version >= "3.7" and python_version < "3.12" -exceptiongroup==1.1.1 ; python_version >= "3.7" and python_version < "3.12" +exceptiongroup==1.1.1 ; python_version >= "3.7" and python_version < "3.11" fastapi-utils==0.2.1 ; python_version >= "3.7" and python_version < "3.12" fastapi==0.95.2 ; python_version >= "3.7" and python_version < "3.12" frozenlist==1.3.3 ; python_version >= "3.7" and python_version < "3.12" @@ -86,7 +84,6 @@ humanfriendly==10.0 ; python_version >= "3.7" and python_version < "3.12" idna==3.4 ; python_version >= "3.7" and python_version < "3.12" importlib-metadata==4.13.0 ; python_version >= "3.7" and python_version < "3.12" importlib-resources==5.12.0 ; python_version >= "3.7" and python_version < "3.12" -iniconfig==2.0.0 ; python_version >= "3.7" and python_version < "3.12" isa-rwval==0.10.10 ; python_version >= "3.7" and python_version < "3.12" isodate==0.6.1 ; python_version >= "3.7" and python_version < "3.12" jinja2==3.1.2 ; python_version >= "3.7" and python_version < "3.12" @@ -114,7 +111,6 @@ numpy==1.21.6 ; python_version >= "3.7" and python_version < "3.8" numpy==1.24.3 ; python_version >= "3.8" and python_version < "3.12" oauthlib==3.2.2 ; python_version >= "3.7" and python_version < "3.12" orjson==3.8.14 ; python_version >= "3.7" and python_version < "3.12" -outcome==1.2.0 ; python_version >= "3.7" and python_version < "3.12" oyaml==1.0 ; python_version >= "3.7" and python_version < "3.12" packaging==23.1 ; python_version >= "3.7" and python_version < "3.12" paramiko==3.2.0 ; python_version >= "3.7" and python_version < "3.12" @@ -123,7 +119,6 @@ paste==3.5.3 ; python_version >= "3.7" and python_version < "3.12" pastedeploy==3.0.1 ; python_version >= "3.7" and python_version < "3.12" pebble==5.0.3 ; python_version >= "3.7" and python_version < "3.12" pkgutil-resolve-name==1.3.10 ; python_version >= "3.7" and python_version < "3.9" -pluggy==1.0.0 ; python_version >= "3.7" and python_version < "3.12" prompt-toolkit==3.0.38 ; python_version >= "3.7" and python_version < "3.12" prov==1.5.1 ; python_version >= "3.7" and python_version < "3.12" psutil==5.9.5 ; python_version >= "3.7" and python_version < "3.12" @@ -147,8 +142,6 @@ pyreadline3==3.4.1 ; sys_platform == "win32" and python_version >= "3.8" and pyt pyreadline==2.1 ; sys_platform == "win32" and python_version < "3.8" and python_version >= "3.7" pyrsistent==0.19.3 ; python_version >= "3.7" and python_version < "3.12" pysam==0.21.0 ; python_version >= "3.7" and python_version < "3.12" -pysocks==1.7.1 ; python_version >= "3.7" and python_version < "3.12" -pytest==7.3.1 ; python_version >= "3.7" and python_version < "3.12" python-dateutil==2.8.2 ; python_version >= "3.7" and python_version < "3.12" python-jose==3.3.0 ; python_version >= "3.7" and python_version < "3.12" python-magic==0.4.27 ; python_version >= "3.7" and python_version < "3.12" @@ -172,7 +165,6 @@ ruamel-yaml-clib==0.2.7 ; platform_python_implementation == "CPython" and python ruamel-yaml==0.17.21 ; python_version >= "3.7" and python_version < "3.12" s3fs==2023.1.0 ; python_version >= "3.7" and python_version < "3.12" schema-salad==8.4.20230511084951 ; python_version >= "3.7" and python_version < "3.12" -selenium==4.9.1 ; python_version >= "3.7" and python_version < "3.12" setuptools-scm==5.0.2 ; python_version >= "3.7" and python_version < "3.12" setuptools==67.8.0 ; python_version >= "3.7" and python_version < "3.12" shellescape==3.8.1 ; python_version >= "3.7" and python_version < "3.12" @@ -190,18 +182,14 @@ svgwrite==1.4.3 ; python_version >= "3.7" and python_version < "3.12" tenacity==8.2.2 ; python_version >= "3.7" and python_version < "3.12" tifffile==2021.11.2 ; python_version >= "3.7" and python_version < "3.12" tinydb==4.7.1 ; python_version >= "3.7" and python_version < "3.12" -tomli==2.0.1 ; python_version >= "3.7" and python_version < "3.11" tornado==6.2 ; python_version >= "3.7" and python_version < "3.12" tqdm==4.65.0 ; python_version >= "3.7" and python_version < "3.12" -trio-websocket==0.10.2 ; python_version >= "3.7" and python_version < "3.12" -trio==0.22.0 ; python_version >= "3.7" and python_version < "3.12" tuspy==1.0.0 ; python_version >= "3.7" and python_version < "3.12" tuswsgi==0.5.5 ; python_version >= "3.7" and python_version < "3.12" typing-extensions==4.6.2 ; python_version >= "3.7" and python_version < "3.12" tzlocal==2.1 ; python_version >= "3.7" and python_version < "3.12" ubiquerg==0.6.2 ; python_version >= "3.7" and python_version < "3.12" urllib3==1.26.16 ; python_version >= "3.7" and python_version < "3.12" -urllib3[socks]==1.26.16 ; python_version >= "3.7" and python_version < "3.12" uvicorn==0.22.0 ; python_version >= "3.7" and python_version < "3.12" uvloop==0.17.0 ; python_version >= "3.7" and python_version < "3.12" vine==5.0.0 ; python_version >= "3.7" and python_version < "3.12" @@ -210,7 +198,6 @@ webencodings==0.5.1 ; python_version >= "3.7" and python_version < "3.12" webob==1.8.7 ; python_version >= "3.7" and python_version < "3.12" whoosh==2.7.4 ; python_version >= "3.7" and python_version < "3.12" wrapt==1.15.0 ; python_version >= "3.7" and python_version < "3.12" -wsproto==1.2.0 ; python_version >= "3.7" and python_version < "3.12" yacman==0.9.0 ; python_version >= "3.7" and python_version < "3.12" yarl==1.9.2 ; python_version >= "3.7" and python_version < "3.12" zipp==3.15.0 ; python_version >= "3.7" and python_version < "3.12" diff --git a/pyproject.toml b/pyproject.toml index 03387e11b9d..bf01d87ebc1 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -31,7 +31,6 @@ a2wsgi = "*" aiofiles = "*" alembic = "*" apispec = "*" -axe-selenium-python = "*" Babel = "*" bdbag = ">=1.6.3" Beaker = "*" @@ -117,6 +116,7 @@ s3fs = "^2023.1.0" [tool.poetry.group.dev.dependencies] ase = ">=3.18.1" +axe-selenium-python = "*" black = "*" codespell = "*" cwltest = "*"