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Ross Lazarus
2011-07-05 12:40:43 +10:00
parent 45815d4bc0
commit 86b55bb0c0
251 changed files with 160 additions and 91 deletions
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tools/plotting/scatterplot.xml
+45 -4
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@@ -1,6 +1,6 @@
<tool id="scatterplot_rpy" name="Scatterplot">
<description>of two numeric columns</description>
<command interpreter="python">scatterplot.py $input $out_file1 $col1 $col2 "$title" "$xlab" "$ylab"</command>
<command interpreter="python">scatterplot.py $input $out_file1 $col1 $col2 "$title" "$xlab" "$ylab" $output_format $out_width $out_height $point_size</command>
<inputs>
<param name="input" type="data" format="tabular" label="Dataset" help="Dataset missing? See TIP below"/>
<param name="col1" type="data_column" data_ref="input" numerical="True" label="Numerical column for x axis" />
@@ -8,15 +8,26 @@
<param name="title" size="30" type="text" value="Scatterplot" label="Plot title"/>
<param name="xlab" size="30" type="text" value="V1" label="Label for x axis"/>
<param name="ylab" size="30" type="text" value="V2" label="Label for y axis"/>
<param name="output_format" type="select" label="Output format">
<option value="pdf">pdf</option>
<option value="png">png</option>
<option value="jpg">jpg</option>
</param>
<param name="out_width" size="4" type="integer" value="8" label="Width (pdf=inches, image=pixels)"/>
<param name="out_height" size="4" type="integer" value="8" label="Height (pdf=inches, image=pixels)"/>
<param name="point_size" size="4" type="float" value="0.2" label="Point Size"/>
</inputs>
<outputs>
<data format="pdf" name="out_file1" />
<data format="pdf" name="out_file1">
<change_format>
<when input="output_format" value="png" format="png" />
<when input="output_format" value="jpg" format="jpg" />
</change_format>
</data>
</outputs>
<requirements>
<requirement type="python-module">rpy</requirement>
</requirements>
<!-- TODO: uncomment the following test when we have tools.update_state() working for
multiple dependents with the same dependency.
<tests>
<test>
<param name="input" value="scatterplot_in1.tabular" ftype="tabular"/>
@@ -25,8 +36,38 @@
<param name="title" value="Scatterplot"/>
<param name="xlab" value="V1"/>
<param name="ylab" value="V2"/>
<param name="out_width" value="8"/>
<param name="out_height" value="8"/>
<param name="point_size" value="0.5"/>
<param name="output_format" value="pdf" />
<output name="out_file1" file="scatterplot_out1.pdf" />
</test>
<test>
<param name="input" value="scatterplot_in1.tabular" ftype="tabular"/>
<param name="col1" value="2"/>
<param name="col2" value="3"/>
<param name="title" value="Scatterplot"/>
<param name="xlab" value="V1"/>
<param name="ylab" value="V2"/>
<param name="out_width" value="800"/>
<param name="out_height" value="600"/>
<param name="point_size" value="0.5"/>
<param name="output_format" value="png" />
<output name="out_file1" file="scatterplot_out1.png" />
</test>
<test>
<param name="input" value="scatterplot_in1.tabular" ftype="tabular"/>
<param name="col1" value="2"/>
<param name="col2" value="3"/>
<param name="title" value="Scatterplot"/>
<param name="xlab" value="V1"/>
<param name="ylab" value="V2"/>
<param name="out_width" value="800"/>
<param name="out_height" value="600"/>
<param name="point_size" value="0.5"/>
<param name="output_format" value="jpg" />
<output name="out_file1" file="scatterplot_out1.jpg" />
</test>
</tests>
-->
<help>