diff --git a/datatypes_conf.xml.sample b/datatypes_conf.xml.sample index 97fe736be05..4cbc8f1eece 100644 --- a/datatypes_conf.xml.sample +++ b/datatypes_conf.xml.sample @@ -8,6 +8,7 @@ + diff --git a/display_applications/ensembl/ensembl_bam.xml b/display_applications/ensembl/ensembl_bam.xml new file mode 100644 index 00000000000..60f4541c077 --- /dev/null +++ b/display_applications/ensembl/ensembl_bam.xml @@ -0,0 +1,25 @@ + + + + + + + + + + + + + + ${dataset.dbkey in $site_dbkeys} + + + ${site_link}${site_organism}/Location/View?contigviewbottom=bam:${bam_file.qp}=normal + + + + + $site_organisms[ $site_dbkeys.index( $bam_file.dbkey ) ] + + + diff --git a/tool-data/shared/ensembl/ensembl_sites.txt b/tool-data/shared/ensembl/ensembl_sites.txt index c48232df1b3..793a7630032 100644 --- a/tool-data/shared/ensembl/ensembl_sites.txt +++ b/tool-data/shared/ensembl/ensembl_sites.txt @@ -2,3 +2,4 @@ #http://www.ensembl.org/info/docs/webcode/linking.html ensembl_Current Current http://www.ensembl.org/ hg19,felCat3,galGal3,bosTau4,canFam2,loxAfr3,cavPor3,equCab2,anoCar1,oryLat2,mm9,monDom5,ponAbe2,susScr2,ornAna1,oryCun2,rn4,rheMac2,gasAcu1,tetNig2,xenTro2,taeGut1,danRer5,ci2,dm3,ce6,sacCer2 Homo_sapiens,Felis_catus,Gallus_gallus,Bos_taurus,Canis_familiaris,Loxodonta_africana,Cavia_porcellus,Equus_caballus,Anolis_carolinensis,Oryzias_latipes,Mus_musculus,Monodelphis_domestica,Pongo_pygmaeus,Sus_scrofa,Ornithorhynchus_anatinus,Oryctolagus_cuniculus,Rattus_norvegicus,Macaca_mulatta,Gasterosteus_aculeatus,Tetraodon_nigroviridis,Xenopus_tropicalis,Taeniopygia_guttata,Danio_rerio,Ciona_intestinalis,Drosophila_melanogaster,Caenorhabditis_elegans,Saccharomyces_cerevisiae ensembl_May_2009 May 2009 http://may2009.archive.ensembl.org/ hg18 Homo_sapiens +ensembl_plants Plants http://plants.ensembl.org/ araTha_tair9 Arabidopsis_thaliana