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"}});return{View:t}}),define("mvc/ui/ui-slider",["utils/utils"],function(e){var t=Backbone.View.extend({optionsDefault:{min:null,max:null,step:null,precise:!1,split:1e4},initialize:function(t){var n=this;this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.useslider=this.options.max!==null&&this.options.min!==null&&this.options.max>this.options.min,this.options.step===null&&(this.options.step=1,this.options.precise&&this.useslider&&(this.options.step=(this.options.max-this.options.min)/this.options.split)),this.useslider?(this.$slider=this.$el.find("#slider"),this.$slider.slider(this.options),this.$slider.on("slide",function(e,t){n.value(t.value)})):this.$el.find(".ui-form-slider-text").css("width","100%"),this.$text=this.$el.find("#text"),this.options.value!==undefined&&this.value(this.options.value),this.$text.on("input",function(){n.value($(this).val())});var r=[];this.$text.on("keyup",function(e){r[e.which]=!1}),this.$text.on("keydown",function(e){var t=e.which;r[t]=!0,t==8||t==9||t==13||t==37||t==39||t>=48&&t<=57||t==190&&$(this).val().indexOf(".")==-1&&n.options.precise||t==189&&$(this).val().indexOf("-")==-1||r[91]||r[17]||event.preventDefault()})},value:function(e){return e!==undefined&&(isNaN(e)&&(e=0),this.options.max!==null&&(e=Math.min(e,this.options.max)),this.options.min!==null&&(e=Math.max(e,this.options.min)),this.options.onchange&&this.options.onchange(e),this.$slider&&this.$slider.slider("value",e),this.$text.val(e)),this.$text.val()},_template:function(e){return'"}});return{View:t}}),define("mvc/ui/ui-options",["utils/utils"],function(e){var t=Backbone.View.extend({initialize:function(t){this.optionsDefault={visible:!0,data:[],id:e.uuid(),error_text:"No data available.",wait_text:"Please wait..."},this.options=e.merge(t,this.optionsDefault),this.setElement(""),this.$message=$(""),this.$options=$(this._template(t)),this.$el.append(this.$message),this.$el.append(this.$options),this.options.visible||this.$el.hide(),this.update(this.options.data),this.options.value!==undefined&&this.value(this.options.value);var n=this;this.on("change",function(){n._change()})},update:function(e){var t=this._getValue();this.$options.empty();if(this._templateOptions)this.$options.append(this._templateOptions(e));else for(var n in e){var r=$(this._templateOption(e[n]));r.addClass("ui-option"),this.$options.append(r)}var i=this;this.$el.find("input").on("change",function(){i.value(i._getValue()),i._change()}),this._refresh(),this.value(t)},value:function(e){if(e!==undefined){e instanceof Array||(e=[e]),this.$el.find("input").prop("checked",!1);for(var t in e)this.$el.find('input[value="'+e[t]+'"]').first().prop("checked",!0)}return this._getValue()},exists:function(e){if(e!==undefined){e instanceof Array||(e=[e]);for(var t in e)if(this.$el.find('input[value="'+e[t]+'"]').length>0)return!0}return!1},first:function(){var e=this.$el.find("input");return e.length>0?e.val():undefined},validate:function(){return e.validate(this.value())},wait:function(){this._size()==0&&(this._messageShow(this.options.wait_text,"info"),this.$options.hide())},unwait:function(){this._messageHide(),this._refresh()},_change:function(){this.options.onchange&&this.options.onchange(this._getValue())},_refresh:function(){this._size()==0?(this._messageShow(this.options.error_text,"danger"),this.$options.hide()):(this._messageHide(),this.$options.css("display","inline-block"))},_getValue:function(){var e=this.$el.find(":checked");if(e.length==0)return"__null__";if(this.options.multiple){var t=[];return e.each(function(){t.push($(this).val())}),t}return e.val()},_size:function(){return this.$el.find(".ui-option").length},_messageShow:function(e,t){this.$message.show(),this.$message.removeClass(),this.$message.addClass("ui-message alert alert-"+t),this.$message.html(e)},_messageHide:function(){this.$message.hide()},_template:function(){return''}}),n={};n.View=t.extend({initialize:function(e){t.prototype.initialize.call(this,e)},_templateOption:function(e){return''+e.label+"
"+"
"}});var r={};r.View=t.extend({initialize:function(e){e.multiple=!0,t.prototype.initialize.call(this,e)},_templateOption:function(e){return'"+"
'+e.label+"
"+"
"}});var i={};return i.View=t.extend({initialize:function(e){t.prototype.initialize.call(this,e)},value:function(e){return e!==undefined&&(this.$el.find("input").prop("checked",!1),this.$el.find("label").removeClass("active"),this.$el.find('[value="'+e+'"]').prop("checked",!0).closest("label").addClass("active")),this._getValue()},_templateOption:function(e){var t='",t},_template:function(){return''}}),{Base:t,Radio:n,RadioButton:i,Checkbox:r}}),define("mvc/ui/ui-drilldown",["utils/utils","mvc/ui/ui-options"],function(e,t){var n=t.Base.extend({initialize:function(e){this.display=e.display||"checkbox",e.multiple=this.display=="checkbox",t.Base.prototype.initialize.call(this,e)},_templateOption:function(e,t,n){return'"+"
'+e+""},_templateOptions:function(e){function n(e,t){function n(n){n?(t.fadeIn("fast"),e.removeClass("toggle-expand"),e.addClass("toggle"),e.is_expanded=!0):(t.hide(),e.removeClass("toggle"),e.addClass("toggle-expand"),e.is_expanded=!1)}e.on("click",function(){n(!e.is_expanded)})}function r(e,s){for(i in s){var o=s[i],u=o.options.length>0,a=$("");if(u){var f=$(''),l=$("");l.append(f),l.append(t._templateOption(o.name,o.value)),a.append(l);var c=$('');r(c,o.options),a.append(c),n(f,c)}else a.append(t._templateOption(o.name,o.value));e.append(a)}}var t=this,s=$("");return r(s,e),s},_template:function(e){return''}});return{View:n}}),define("mvc/ui/ui-button-menu",["utils/utils"],function(e){return Backbone.View.extend({optionsDefault:{id:"",title:"",floating:"right",icon:null,onclick:null,cls:"ui-button-icon ui-button-menu",tooltip:"",target:"",href:"",onunload:null,visible:!0,tag:""},$menu:null,initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement($(this._template(this.options)));var n=$(this.el).find(".root"),r=this;n.on("click",function(e){$(".tooltip").hide(),e.preventDefault(),r.options.onclick&&r.options.onclick()}),this.options.visible||this.hide(),n.tooltip({title:t.tooltip,placement:"bottom"})},show:function(){$(this.el).show()},hide:function(){$(this.el).hide()},addMenu:function(t){var n={title:"",target:"",href:"",onclick:null,divider:!1,icon:null,cls:"button-menu btn-group"};n=e.merge(t,n),this.$menu||($(this.el).append(this._templateMenu()),this.$menu=$(this.el).find(".menu"));var r=$(this._templateMenuItem(n));r.on("click",function(e){e.preventDefault(),n.onclick&&n.onclick()}),this.$menu.append(r),n.divider&&this.$menu.append($(this._templateDivider()))},_templateMenuItem:function(e){var t='';return e.icon&&(t+=''),t+=" "+e.title+""+" ",t},_templateMenu:function(){return''},_templateDivider:function(){return''},_template:function(e){var t="",n="";e.title?t="width: auto;":n="margin: 0px;";var r='
'}}),a=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options))},title:function(e){this.$el.html(e)},_template:function(e){return'"},value:function(){return options.title}}),f=Backbone.View.extend({optionsDefault:{floating:"right",icon:"",tooltip:"",placement:"bottom",title:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},_template:function(e){return'0&&this.ready()){var e=this.queue[0];this.queue.splice(0,1),e&&e()}})},execute:function(e){this.queue.push(e),this.trigger("refresh")},register:function(){var t=e.uuid();return this.process[t]=!0,this.counter++,console.debug("Deferred:register() - Registering "+t),t},done:function(e){this.process[e]&&(delete this.process[e],this.counter--,console.debug("Deferred:done() - Unregistering "+e),this.trigger("refresh"))},reset:function(){this.queue=[]},ready:function(){return this.counter==0}})}),define("plugin/views/viewport",["mvc/ui/ui-portlet","mvc/ui/ui-misc","utils/utils"],function(e,t,n){return Backbone.View.extend({container_list:[],canvas_list:[],initialize:function(e,t){this.app=e,this.chart=this.app.chart,this.options=n.merge(t,this.optionsDefault),this.setElement($(this._template())),this._fullscreen(this.$el,90);var r=$("body").css("overflow");this.$el.on("mouseover",function(){$("body").css("overflow","hidden")}).on("mouseout",function(){$("body").css("overflow",r)}),this._createContainer("div");var i=this;this.chart.on("redraw",function(){i._draw(i.chart)}),this.chart.on("set:state",function(){var e=i.$el.find("#info"),t=i.$el.find(".charts-viewport-container"),n=e.find("#icon");n.removeClass(),e.show(),e.find("#text").html(i.chart.get("state_info"));var r=i.chart.get("state");switch(r){case"ok":e.hide(),t.show();break;case"failed":n.addClass("icon fa fa-warning"),t.hide();break;default:n.addClass("icon fa fa-spinner fa-spin"),t.show()}})},show:function(){this.$el.show()},hide:function(){this.$el.hide()},_fullscreen:function(e,t){e.css("height",$(window).height()-t),$(window).resize(function(){e.css("height",$(window).height()-t)})},_createContainer:function(e,t){t=t||1;for(var n in this.container_list)this.container_list[n].remove();this.container_list=[],this.canvas_list=[];for(var n=0;n
'},_templateContainer:function(e,t){return'"}})}),define("plugin/library/screenshot",["libs/underscore"],function(e){function t(e){e.$el.find("svg").length>0?r(e):n(e)}function n(e){try{var t=e.$el.find(".jqplot-target"),n=t.jqplotToImageStr({});n&&(window.location.href=n.replace("image/png","image/octet-stream"))}catch(r){console.debug("FAILED - Screenshot::_fromCanvas() - "+r),e.error&&e.error("Please reduce your chart to a single panel and try again.")}}function r(e){var t=e.$el,n=e.url,r=e.name,s=new XMLSerializer,o=document.createElement("canvas"),u=$(o),a=t.find("svg").length,f=t.find("svg").first(),l=parseInt(f.css("height")),c=parseInt(f.css("width"));u.attr("width",c*a),u.attr("height",l),(!o.getContext||!o.getContext("2d"))&&alert("Your browser doesn't support this feature, please use a modern browser");var h=o.getContext("2d"),p=0;t.find("svg").each(function(){var e=$(this);e.attr({version:"1.1",xmlns:"http://www.w3.org/2000/svg",width:c,height:l});var t=s.serializeToString(this);h.drawSvg(t,p,0,c,l),p+=c}),window.location.href=i(o,o.getContext("2d"),"white").replace("image/png","image/octet-stream")}function i(e,t,n){var r=e.width,i=e.height,s;if(n){s=t.getImageData(0,0,r,i);var o=t.globalCompositeOperation;t.globalCompositeOperation="destination-over",t.fillStyle=n,t.fillRect(0,0,r,i)}var u=e.toDataURL("image/png");return n&&(t.clearRect(0,0,r,i),t.putImageData(s,0,0),t.globalCompositeOperation=o),u}function s(e){window.location.href="data:none/none;base64,"+btoa(a(e).string)}function o(e){for(var t in document.styleSheets){var n=document.styleSheets[t],r=n.cssRules;if(r)for(var i=0,s=r.length;i'+'
",r}})}),define("mvc/ui/ui-misc",["utils/utils","mvc/ui/ui-select-default","mvc/ui/ui-slider","mvc/ui/ui-options","mvc/ui/ui-drilldown","mvc/ui/ui-button-menu","mvc/ui/ui-modal"],function(e,t,n,r,i,s,o){var u=Backbone.View.extend({optionsDefault:{url:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options))},_template:function(e){return' '+e.title+"
"}}),l=Backbone.View.extend({optionsDefault:{id:null,title:"",floating:"right",cls:"ui-button btn btn-default",icon:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),$(this.el).on("click",function(){$(".tooltip").hide(),t.onclick&&t.onclick()}),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},_template:function(e){var t='",t}}),c=Backbone.View.extend({optionsDefault:{id:null,title:"",floating:"right",cls:"ui-button-icon",icon:"",tooltip:"",onclick:null},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.$button=this.$el.find(".button");var n=this;$(this.el).on("click",function(){$(".tooltip").hide(),t.onclick&&!n.disabled&&t.onclick()}),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},disable:function(){this.$button.addClass("disabled"),this.disabled=!0},enable:function(){this.$button.removeClass("disabled"),this.disabled=!1},setIcon:function(e){this.$("i").removeClass(this.options.icon).addClass(e),this.options.icon=e},_template:function(e){var t="";e.title&&(t="width: auto;");var n='';return e.title?n+='":n+='',n+="
",n}}),h=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),$(this.el).on("click",t.onclick)},_template:function(e){return'"}}),p=Backbone.View.extend({optionsDefault:{message:null,status:"info",persistent:!1},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(""),this.options.message&&this.update(this.options)},update:function(t){this.options=e.merge(t,this.optionsDefault);if(t.message!=""){this.$el.html(this._template(this.options)),this.$el.find(".alert").append(t.message),this.$el.fadeIn(),this.timeout&&window.clearTimeout(this.timeout);if(!t.persistent){var n=this;this.timeout=window.setTimeout(function(){n.$el.is(":visible")?n.$el.fadeOut():n.$el.hide()},3e3)}}else this.$el.fadeOut()},_template:function(e){return''}}),d=Backbone.View.extend({optionsDefault:{onclick:null,searchword:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options));var n=this;this.options.onclick&&this.$el.on("submit",function(e){var t=n.$el.find("#search");n.options.onclick(t.val())})},_template:function(e){return'"+"
"}}),v=Backbone.View.extend({optionsDefault:{type:"text",placeholder:"",disabled:!1,visible:!0,cls:"",area:!1},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.options.value!==undefined&&this.value(this.options.value),this.options.disabled&&this.$el.prop("disabled",!0),this.options.visible||this.$el.hide();var n=this;this.$el.on("input",function(){n.options.onchange&&n.options.onchange(n.$el.val())})},value:function(e){return e!==undefined&&this.$el.val(e),this.$el.val()},_template:function(e){return e.area?'':''}}),m=Backbone.View.extend({initialize:function(e){this.options=e,this.setElement(this._template(this.options)),this.options.value!==undefined&&this.value(this.options.value)},value:function(e){return e!==undefined&&this.$("hidden").val(e),this.$("hidden").val()},_template:function(e){var t='';return e.info&&(t+=""),t+='
",t}}),g=Backbone.View.extend({optionsDefault:{class_add:"fa fa-square-o",class_remove:"fa fa-check-square-o",class_partial:"fa fa-minus-square-o",value:!1},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement($("")),this.value(Boolean(this.options.value));var n=this;this.$el.on("click",function(){n.value(!n.current)})},value:function(e){return e!==undefined&&(this.current=e,e?this.$el.removeClass().addClass("ui-checkbutton").addClass(this.options.class_remove):this.$el.removeClass().addClass("ui-checkbutton").addClass(this.options.class_add),this.options.onchange&&this.options.onchange(e)),this.current}});return{Anchor:h,Button:l,ButtonIcon:c,ButtonMenu:s,Icon:f,Image:u,Input:v,Label:a,Message:p,Modal:o,RadioButton:r.RadioButton,Checkbox:r.Checkbox,Radio:r.Radio,CheckButton:g,Searchbox:d,Select:t,Hidden:m,Slider:n,Drilldown:i}}),define("plugin/library/jobs",["utils/utils"],function(e){return Backbone.Model.extend({initialize:function(t,n){this.app=t,this.options=e.merge(n,this.optionsDefault)},request:function(e,t,n,r,i){var s=this;e.state("wait","Requesting job results...");var o=e.get("dataset_id_job");o!=""?s._wait(e,r,i):s._submit(e,t,n,r,i)},cleanup:function(t){var n=this,r=t.get("dataset_id_job");r!=""&&(e.request({type:"PUT",url:config.root+"api/histories/none/contents/"+r,data:{deleted:!0},success:function(){n._refreshHdas()}}),t.set("dataset_id_job",""))},_submit:function(t,n,r,i,s){var o=this,u=t.id,a=t.get("type"),f=t.definition;data={tool_id:"charts",inputs:{input:{id:t.get("dataset_id"),src:"hda"},module:f.execute,columns:r,settings:n}},t.state("wait","Sending job request..."),e.request({type:"POST",url:config.root+"api/tools",data:data,success:function(e){if(!e.outputs||e.outputs.length==0)t.state("failed","Job submission failed. No response."),s&&s();else{o._refreshHdas();var n=e.outputs[0];t.state("wait","Your job has been queued. You may close the browser window. The job will run in the background."),t.set("dataset_id_job",n.id),o.app.storage.save(),o._wait(t,i,s)}},error:function(e){var n="";e&&e.message&&e.message.data&&e.message.data.input&&(n=e.message.data.input+"."),t.state("failed","This visualization requires the 'charts' tool. Please make sure it is installed. "+n),s&&s()}})},_wait:function(t,n,r){var i=this;e.request({type:"GET",url:config.root+"api/datasets/"+t.get("dataset_id_job"),data:{},success:function(e){var s=!1;switch(e.state){case"ok":t.state("wait","Job completed successfully..."),n&&n(e),s=!0;break;case"error":t.state("failed","Job has failed. Please check the history for details."),r&&r(e),s=!0;break;case"running":t.state("wait","Your job is running. You may close the browser window. The job will continue in the background.")}s||setTimeout(function(){i._wait(t,n,r)},i.app.config.get("query_timeout"))}})},_refreshHdas:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.refreshContents()}})}),define("plugin/library/datasets",["utils/utils"],function(e){return Backbone.Collection.extend({list:{},cache:{},initialize:function(t,n){this.app=t,this.options=e.merge(n,this.optionsDefault)},request:function(e){e.groups?this._get_blocks(e):this._get_dataset(e.id,e.success,e.error)},_get_blocks:function(e){function c(i){l._get(i,function(){var s=!1;for(var o in e.groups){destination_group=e.groups[o],source_group=i.groups[o],destination_group.values||(destination_group.values=[]),destination_group.values=destination_group.values.concat(source_group.values);if(source_group.values.length==0){s=!0;break}}if(++f"}});return{View:t}}),define("plugin/views/group",["mvc/ui/ui-table","mvc/ui/ui-misc","utils/utils"],function(e,t,n){return Backbone.View.extend({initialize:function(r,i){this.app=r;var s=this;this.chart=this.app.chart,this.group=i.group,this.group_key=new t.Input({placeholder:"Data label",onchange:function(e){s.group.set("key",e)}}),this.table=new e.View({content:"No data column."});var o=$("");o.append(n.wrap((new t.Label({title:"Provide a label:"})).$el)),o.append(n.wrap(this.group_key.$el)),o.append(n.wrap((new t.Label({title:"Select columns:"})).$el)),o.append(n.wrap(this.table.$el)),this.setElement(o);var s=this;this.chart.on("change:dataset_id",function(){s._refreshTable()}),this.chart.on("change:type",function(){s._refreshTable()}),this.group.on("change:key",function(){s._refreshGroupKey()}),this.group.on("change",function(){s._refreshGroup()}),this._refreshTable(),this._refreshGroupKey(),this._refreshGroup()},_refreshTable:function(){var e=this.chart.get("dataset_id"),n=this.chart.get("type");if(!e||!n)return;var r=this,i=this.chart.definition;this.table.delAll();var s={};for(var o in i.columns){var u=i.columns[o];if(!u){console.debug("Group::_refreshTable() - Skipping column definition.");continue}var a=new t.Select.View({id:"select_"+o,wait:!0}),f=u.title;u.is_unique&&(f+=" (all data labels)"),this.table.add(f,"25%"),this.table.add(a.$el),this.table.append(o),s[o]=a}this.chart.state("wait","Loading metadata...");var l=this.app.deferred.register(),c={id:e,success:function(e){for(var t in s)r._addRow(t,e,s,i.columns[t]);r.chart.state("ok","Metadata initialized..."),r.app.deferred.done(l)}};this.app.datasets.request(c)},_addRow:function(e,t,n,r){var i=this,s=r.is_label,o=r.is_auto,u=r.is_numeric,a=r.is_unique,f=r.is_zero,l=[],c=n[e];o&&l.push({label:"Column: Row Number",value:"auto"}),f&&l.push({label:"Column: None",value:"zero"});var h=t.metadata_column_types;for(var p in h){var d=!1;h[p]=="int"||h[p]=="float"?d=u:d=s,d&&l.push({label:"Column: "+(parseInt(p)+1)+" ["+h[p]+"]",value:p})}c.update(l),a&&this.chart.groups.first()&&this.group.set(e,this.chart.groups.first().get(e));if(!c.exists(this.group.get(e))){var v=c.first();console.debug('Group()::_addRow() - Switching model value from "'+this.group.get(e)+'" to "'+v+'".'),this.group.set(e,v)}c.value(this.group.get(e)),this.group.off("change:"+e),this.group.on("change:"+e,function(){c.value(i.group.get(e))}),c.setOnChange(function(t){a?i.chart.groups.each(function(n){n.set(e,t)}):i.group.set(e,t),i.chart.set("modified",!0)}),c.show()},_refreshGroup:function(){this.group.set("date",n.time())},_refreshGroupKey:function(){var e=this.group.get("key");e===undefined&&(e=""),e!=this.group_key.value()&&this.group_key.value(e)}})}),define("plugin/library/ui-table-form",["mvc/ui/ui-table","mvc/ui/ui-misc","utils/utils"],function(e,t,n){var r=Backbone.View.extend({optionsDefault:{title:"",content:"",mode:""},list:[],initialize:function(r,i){this.app=r,this.options=n.merge(i,this.optionsDefault),this.table_title=new t.Label({title:this.options.title}),this.table=new e.View({content:this.options.content});var s=$('');this.options.title&&s.append(n.wrap(this.table_title.$el)),s.append(n.wrap(this.table.$el)),this.setElement(s)},title:function(e){this.table_title.title(e)},update:function(e,t){this.table.delAll(),this.list=[];for(var n in e)this._add(e[n].id||n,e[n],t);for(var n in this.list)this.list[n].trigger("change")},_add:function(e,n,r){var i=this,s=null,o=n.type;switch(o){case"text":s=new t.Input({id:"field-"+e,placeholder:n.placeholder,value:r.get(e),onchange:function(t){r.set(e,t)}});break;case"radiobutton":s=new t.RadioButton.View({id:"field-"+e,data:n.data,value:r.get(e),onchange:function(t){r.set(e,t);var s=_.findWhere(n.data,{value:t});if(s&&s.operations){var o=s.operations;for(var u in o.show){var a=o.show[u];i.table.get(a).show()}for(var u in o.hide){var a=o.hide[u];i.table.get(a).hide()}}}});break;case"select":s=new t.Select.View({id:"field-"+e,data:n.data,value:r.get(e),onchange:function(t){r.set(e,t);var s=_.findWhere(n.data,{value:t});if(s&&s.operations){var o=s.operations;for(var u in o.show){var a=o.show[u];i.table.get(a).show()}for(var u in o.hide){var a=o.hide[u];i.table.get(a).hide()}}}});break;case"dataset":s=new t.Select.View({id:"field-"+e,onchange:function(t){r.set(e,t)}}),i.app.datasets.on("all",function(){var t=[];i.app.datasets.each(function(e){e.get("datatype_id")==n.data&&t.push({value:e.get("id"),label:e.get("name")})}),s.update(t),r.get(e)||r.set(e,s.first()),s.value(r.get(e))}),i.app.datasets.trigger("all.datasets");break;case"textarea":s=new t.Textarea({id:"field-"+e,onchange:function(){r.set(e,s.value())}});break;case"separator":s=$("");break;default:s=new t.Input({id:"field-"+e,placeholder:n.placeholder,type:n.type,onchange:function(){r.set(e,s.value())}})}if(o!="separator"){r.get(e)||r.set(e,n.init),s.value(r.get(e)),this.list[e]=s;var u=$("");u.append(s.$el),n.info&&u.append('
'+n.info+"
"),this.options.style=="bold"?(this.table.add((new t.Label({title:n.title,cls:"form-label"})).$el),this.table.add(u)):(this.table.add(''+n.title+"","25%"),this.table.add(u))}else this.table.add(''+n.title+":"),this.table.add($(""));this.table.append(e),n.hide&&this.table.get(e).hide()}});return{View:r}}),define("plugin/views/settings",["mvc/ui/ui-misc","plugin/library/ui-table-form","utils/utils"],function(e,t,n){return Backbone.View.extend({initialize:function(e,n){this.app=e;var r=this;this.chart=this.app.chart,this.form=new t.View(e,{title:"Configuration",content:"This chart type does not provide any options."}),this.setElement(this.form.$el);var r=this;this.chart.on("change",function(){r._refresh()})},_refresh:function(){var e=this.chart.definition;if(!e)return;this.form.title(e.category+" - "+e.title+":"),this.form.update(e.settings,this.chart.settings)}})}),define("plugin/views/types",["utils/utils","mvc/ui/ui-misc"],function(e,t){return Backbone.View.extend({optionsDefault:{onchange:null,ondblclick:null},events:{click:"_onclick",dblclick:"_ondblclick"},initialize:function(n,r){var i=this;this.app=n,this.options=e.merge(r,this.optionsDefault);var s=$('');s.append(e.wrap((new t.Label({title:"How many data points would you like to analyze?"})).$el)),this.library=new t.RadioButton.View({data:[{label:"Few (<500)",value:"small"},{label:"Some (<10k)",value:"medium"},{label:"Many (>10k)",value:"large"}],onchange:function(e){i._filter(e)}}),s.append(e.wrap(this.library.$el)),this.setElement(s),this._render(),this.library.value("small"),this.library.trigger("change")},value:function(e){var t=this.$el.find(".current").attr("id");e!==undefined&&(this.$el.find(".current").removeClass("current"),this.$el.find("#"+e).addClass("current"));var n=this.$el.find(".current").attr("id");return n===undefined?null:(n!=t&&this.options.onchange&&this.options.onchange(e),n)},_filter:function(e){this.$el.find(".header").hide();var t=this.app.types.attributes;for(var n in t){var r=t[n],i=this.$el.find("#"+n),s=this.$el.find("#types-header-"+this.categories_index[r.category]),o=r.keywords||"";o.indexOf(e)>=0?(i.show(),s.show()):i.hide()}},_render:function(){this.categories={},this.categories_index={};var e=0,t=this.app.types.attributes;for(var n in t){var r=t[n],i=r.category;this.categories[i]||(this.categories[i]={},this.categories_index[i]=e++),this.categories[i][n]=r}for(var i in this.categories){var s=$('');s.append(this._template_header({id:"types-header-"+this.categories_index[i],title:i}));for(var n in this.categories[i]){var r=this.categories[i][n],o=r.title+" ("+r.library+")";r.zoomable&&(o=''+o),s.append(this._template_item({id:n,title:o,url:config.app_root+"charts/"+this.app.chartPath(n)+"/logo.png"}))}this.$el.append(s)}},_onclick:function(e){var t=this.value(),n=$(e.target).closest(".item").attr("id");n!=""&&n&&t!=n&&this.value(n)},_ondblclick:function(e){var t=this.value();t&&this.options.ondblclick&&this.options.ondblclick(t)},_template_header:function(e){return'
'+"• "+e.title+"
"},_template_item:function(e){return'
'+''+'
'+e.title+"
"+""}})}),define("plugin/views/editor",["mvc/ui/ui-tabs","mvc/ui/ui-misc","mvc/ui/ui-portlet","utils/utils","plugin/models/chart","plugin/models/group","plugin/views/group","plugin/views/settings","plugin/views/types"],function(e,t,n,r,i,s,o,u,a){return Backbone.View.extend({initialize:function(i,s){var o=this;this.app=i,this.chart=this.app.chart,this.message=new t.Message,this.portlet=new n.View({icon:"fa-bar-chart-o",title:"Editor",operations:{save:new t.ButtonIcon({icon:"fa-save",tooltip:"Draw Chart",title:"Draw",onclick:function(){o._saveChart()}}),back:new t.ButtonIcon({icon:"fa-caret-left",tooltip:"Return to Viewer",title:"Cancel",onclick:function(){o.app.go("viewer"),o.app.storage.load()}})}}),this.types=new a(i,{onchange:function(e){var t=o.app.types.get(e);t||console.debug("FAILED - Editor::onchange() - Chart type not supported."),o.chart.definition=t,o.chart.settings.clear(),o.chart.set({type:e}),o.chart.set("modified",!0),console.debug("Editor::onchange() - Switched chart type.")},ondblclick:function(e){o._saveChart()}}),this.tabs=new e.View({title_new:"Add Data",onnew:function(){var e=o._addGroupModel();o.tabs.show(e.id)}}),this.title=new t.Input({placeholder:"Chart title",onchange:function(){o.chart.set("title",o.title.value())}});var f=$("");f.append(r.wrap((new t.Label({title:"Provide a chart title:"})).$el)),f.append(this.title.$el),f.append($("").addClass("ui-table-form-info").html("This title will appear in the list of 'Saved Visualizations'. Charts are saved upon creation.")),f.append(r.wrap()),f.append(r.wrap(this.types.$el)),this.tabs.add({id:"main",title:"Start",$el:f}),this.settings=new u(this.app),this.tabs.add({id:"settings",title:"Configuration",$el:this.settings.$el}),this.portlet.append(this.message.$el),this.portlet.append(this.tabs.$el),this.setElement(this.portlet.$el),this.tabs.hideOperation("back");var o=this;this.chart.on("change:title",function(e){o._refreshTitle()}),this.chart.on("change:type",function(e){o.types.value(e.get("type"))}),this.chart.on("reset",function(e){o._resetChart()}),this.app.chart.on("redraw",function(e){o.portlet.showOperation("back")}),this.app.chart.groups.on("add",function(e){o._addGroup(e)}),this.app.chart.groups.on("remove",function(e){o._removeGroup(e)}),this.app.chart.groups.on("reset",function(e){o._removeAllGroups()}),this.app.chart.groups.on("change:key",function(e){o._refreshGroupKey()}),this._resetChart()},show:function(){this.$el.show()},hide:function(){this.$el.hide()},_refreshTitle:function(){var e=this.chart.get("title");this.portlet.title(e),this.title.value()!=e&&this.title.value(e)},_refreshGroupKey:function(){var e=this,t=0;this.chart.groups.each(function(n){var r=n.get("key","");r==""&&(r="Data label"),e.tabs.title(n.id,++t+": "+r)})},_addGroupModel:function(){var e=new s({id:r.uuid()});return this.chart.groups.add(e),e},_addGroup:function(e){var t=this,n=new o(this.app,{group:e});this.tabs.add({id:e.id,$el:n.$el,ondel:function(){t.chart.groups.remove(e.id)}}),this._refreshGroupKey(),this.chart.set("modified",!0)},_removeGroup:function(e){this.tabs.del(e.id),this._refreshGroupKey(),this.chart.set("modified",!0)},_removeAllGroups:function(e){this.tabs.delRemovable()},_resetChart:function(){this.chart.set("id",r.uuid()),this.chart.set("type","nvd3_bar"),this.chart.set("dataset_id",this.app.options.config.dataset_id),this.chart.set("title","New Chart"),this.portlet.hideOperation("back")},_saveChart:function(){this.chart.set({type:this.types.value(),title:this.title.value(),date:r.time()});if(this.chart.groups.length==0){this.message.update({message:"Please select data columns before drawing the chart."});var e=this._addGroupModel();this.tabs.show(e.id);return}var t=this,n=!0,i=this.chart.definition;this.chart.groups.each(function(e){if(!n)return;for(var r in i.columns)if(e.attributes[r]=="null"){t.message.update({status:"danger",message:"This chart type requires column types not found in your tabular file."}),t.tabs.show(e.id),n=!1;return}});if(!n)return;this.app.go("viewer");var t=this;this.app.deferred.execute(function(){t.app.storage.save(),t.chart.trigger("redraw")})}})}),define("plugin/models/config",[],function(){return Backbone.Model.extend({defaults:{query_limit:1e4,query_timeout:100}})}),define("plugin/charts/forms/default",[],function(){return{title:"",category:"",library:"",tag:"",keywords:"",settings:{separator_x:{title:"X axis",type:"separator"},x_axis_label:{title:"Axis label",info:"Provide a label for the axis.",type:"text",init:"X-axis",placeholder:"Axis label"},x_axis_type:{title:"Axis value type",info:"Select the value type of the axis.",type:"select",init:"auto",data:[{label:"-- Do not show values --",value:"hide",operations:{hide:["x_axis_precision"]}},{label:"Auto",value:"auto",operations:{hide:["x_axis_precision"]}},{label:"Float",value:"f",operations:{show:["x_axis_precision"]}},{label:"Exponent",value:"e",operations:{show:["x_axis_precision"]}},{label:"Integer",value:"d",operations:{hide:["x_axis_precision"]}},{label:"Percentage",value:"p",operations:{show:["x_axis_precision"]}},{label:"SI-prefix",value:"s",operations:{hide:["x_axis_precision"]}}]},x_axis_precision:{title:"Axis tick format",info:"Select the tick format for the axis.",type:"select",init:"1",data:[{label:"0.00001",value:"5"},{label:"0.0001",value:"4"},{label:"0.001",value:"3"},{label:"0.01",value:"2"},{label:"0.1",value:"1"},{label:"1",value:"0"}]},separator_y:{title:"Y axis",type:"separator"},y_axis_label:{title:"Axis label",info:"Provide a label for the axis.",type:"text",init:"Y-axis",placeholder:"Axis label"},y_axis_type:{title:"Axis value type",info:"Select the value type of the axis.",type:"select",init:"auto",data:[{label:"-- Do not show values --",value:"hide",operations:{hide:["y_axis_precision"]}},{label:"Auto",value:"auto",operations:{hide:["y_axis_precision"]}},{label:"Float",value:"f",operations:{show:["y_axis_precision"]}},{label:"Exponent",value:"e",operations:{show:["y_axis_precision"]}},{label:"Integer",value:"d",operations:{hide:["y_axis_precision"]}},{label:"Percentage",value:"p",operations:{show:["y_axis_precision"]}},{label:"SI-prefix",value:"s",operations:{hide:["y_axis_precision"]}}]},y_axis_precision:{title:"Axis tick format",info:"Select the tick format for the axis.",type:"select",init:"1",data:[{label:"0.00001",value:"5"},{label:"0.0001",value:"4"},{label:"0.001",value:"3"},{label:"0.01",value:"2"},{label:"0.1",value:"1"},{label:"1",value:"0"}]},separator_legend:{title:"Others",type:"separator"},show_legend:{title:"Show legend",info:"Would you like to add a legend?",type:"radiobutton",init:"true",data:[{label:"Yes",value:"true"},{label:"No",value:"false"}]},use_panels:{title:"Use multi-panels",info:"Would you like to separate your data into individual panels?",type:"radiobutton",init:"false",data:[{label:"Yes",value:"true"},{label:"No",value:"false"}]}}}}),function(){function t(e,t){return(new Date(t,e+1,0)).getDate()}function n(e,t,n){return function(r,i,s){var o=e(r),u=[];o1)while(op||r>d||d3.event.relatedTarget&&d3.event.relatedTarget.ownerSVGElement===undefined||a){if(l&&d3.event.relatedTarget&&d3.event.relatedTarget.ownerSVGElement===undefined&&d3.event.relatedTarget.className.match(t.nvPointerEventsClass))return;u.elementMouseout({mouseX:n,mouseY:r}),c.renderGuideLine(null);return}var f=s.invert(n);u.elementMousemove({mouseX:n,mouseY:r,pointXValue:f}),d3.event.type==="dblclick"&&u.elementDblclick({mouseX:n,mouseY:r,pointXValue:f})}var 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s&&s>0&&(u=Math.floor(u/s)*s),e.tooltip.calcTooltipPosition([t,u],r,i,h),w}var t=null,n=null,r="w",i=50,s=25,o=null,u=null,a=null,f=null,l={left:null,top:null},c=!0,h="nvtooltip-"+Math.floor(Math.random()*1e5),p="nv-pointer-events-none",d=function(e,t){return e},v=function(e){return e},m=function(e){if(t!=null)return t;if(e==null)return"";var n=d3.select(document.createElement("table")),r=n.selectAll("thead").data([e]).enter().append("thead");r.append("tr").append("td").attr("colspan",3).append("strong").classed("x-value",!0).html(v(e.value));var i=n.selectAll("tbody").data([e]).enter().append("tbody"),s=i.selectAll("tr").data(function(e){return e.series}).enter().append("tr").classed("highlight",function(e){return e.highlight});s.append("td").classed("legend-color-guide",!0).append("div").style("background-color",function(e){return e.color}),s.append("td").classed("key",!0).html(function(e){return e.key}),s.append("td").classed("value",!0).html(function(e,t){return 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t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+o.left,e.pos[1]+o.top],S.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){S.tooltipHide(e)}),S.on("tooltipHide",function(){v&&e.tooltip.cleanup()}),C.dispatch=S,C.multibar=t,C.legend=i,C.xAxis=n,C.yAxis=r,d3.rebind(C,t,"x","y","xDomain","yDomain","xRange","yRange","forceX","forceY","clipEdge","id","delay","showValues","showBarLabels","valueFormat","stacked","barColor"),C.options=e.utils.optionsFunc.bind(C),C.margin=function(e){return arguments.length?(o.top=typeof e.top!="undefined"?e.top:o.top,o.right=typeof e.right!="undefined"?e.right:o.right,o.bottom=typeof e.bottom!="undefined"?e.bottom:o.bottom,o.left=typeof e.left!="undefined"?e.left:o.left,C):o},C.width=function(e){return arguments.length?(u=e,C):u},C.height=function(e){return arguments.length?(a=e,C):a},C.color=function(t){return arguments.length?(f=e.utils.getColor(t),i.color(f),C):f},C.showControls=function(e){return 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"}});var r={};r.View=t.extend({initialize:function(e){e.multiple=!0,t.prototype.initialize.call(this,e)},_templateOption:function(e){return'"+"
'+e.label+"
"+"
"}});var i={};return i.View=t.extend({initialize:function(e){t.prototype.initialize.call(this,e)},value:function(e){return e!==undefined&&(this.$el.find("input").prop("checked",!1),this.$el.find("label").removeClass("active"),this.$el.find('[value="'+e+'"]').prop("checked",!0).closest("label").addClass("active")),this._getValue()},_templateOption:function(e){var t='",t},_template:function(){return''}}),{Base:t,Radio:n,RadioButton:i,Checkbox:r}}),define("mvc/ui/ui-drilldown",["utils/utils","mvc/ui/ui-options"],function(e,t){var n=t.Base.extend({initialize:function(e){this.display=e.display||"checkbox",e.multiple=this.display=="checkbox",t.Base.prototype.initialize.call(this,e)},_templateOption:function(e,t,n){return'"+"
'+e+""},_templateOptions:function(e){function n(e,t){function n(n){n?(t.fadeIn("fast"),e.removeClass("toggle-expand"),e.addClass("toggle"),e.is_expanded=!0):(t.hide(),e.removeClass("toggle"),e.addClass("toggle-expand"),e.is_expanded=!1)}e.on("click",function(){n(!e.is_expanded)})}function r(e,s){for(i in s){var o=s[i],u=o.options.length>0,a=$("");if(u){var f=$(''),l=$("");l.append(f),l.append(t._templateOption(o.name,o.value)),a.append(l);var c=$('');r(c,o.options),a.append(c),n(f,c)}else a.append(t._templateOption(o.name,o.value));e.append(a)}}var t=this,s=$("");return r(s,e),s},_template:function(e){return''}});return{View:n}}),define("mvc/ui/ui-button-menu",["utils/utils"],function(e){return Backbone.View.extend({optionsDefault:{id:"",title:"",floating:"right",icon:null,onclick:null,cls:"ui-button-icon ui-button-menu",tooltip:"",target:"",href:"",onunload:null,visible:!0,tag:""},$menu:null,initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement($(this._template(this.options)));var n=$(this.el).find(".root"),r=this;n.on("click",function(e){$(".tooltip").hide(),e.preventDefault(),r.options.onclick&&r.options.onclick()}),this.options.visible||this.hide(),n.tooltip({title:t.tooltip,placement:"bottom"})},show:function(){$(this.el).show()},hide:function(){$(this.el).hide()},addMenu:function(t){var n={title:"",target:"",href:"",onclick:null,divider:!1,icon:null,cls:"button-menu btn-group"};n=e.merge(t,n),this.$menu||($(this.el).append(this._templateMenu()),this.$menu=$(this.el).find(".menu"));var r=$(this._templateMenuItem(n));r.on("click",function(e){e.preventDefault(),n.onclick&&n.onclick()}),this.$menu.append(r),n.divider&&this.$menu.append($(this._templateDivider()))},_templateMenuItem:function(e){var t='';return e.icon&&(t+=''),t+=" "+e.title+""+" ",t},_templateMenu:function(){return''},_templateDivider:function(){return''},_template:function(e){var t="",n="";e.title?t="width: auto;":n="margin: 0px;";var r=''}}),a=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options))},title:function(e){this.$el.html(e)},_template:function(e){return'"},value:function(){return options.title}}),f=Backbone.View.extend({optionsDefault:{floating:"right",icon:"",tooltip:"",placement:"bottom",title:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},_template:function(e){return'0&&this.ready()){var e=this.queue[0];this.queue.splice(0,1),e&&e()}})},execute:function(e){this.queue.push(e),this.trigger("refresh")},register:function(){var t=e.uuid();return this.process[t]=!0,this.counter++,console.debug("Deferred:register() - Registering "+t),t},done:function(e){this.process[e]&&(delete this.process[e],this.counter--,console.debug("Deferred:done() - Unregistering "+e),this.trigger("refresh"))},reset:function(){this.queue=[]},ready:function(){return this.counter==0}})}),define("plugin/views/viewport",["mvc/ui/ui-portlet","mvc/ui/ui-misc","utils/utils"],function(e,t,n){return Backbone.View.extend({container_list:[],canvas_list:[],initialize:function(e,t){this.app=e,this.chart=this.app.chart,this.options=n.merge(t,this.optionsDefault),this.setElement($(this._template())),this._fullscreen(this.$el,50);var r=$("body").css("overflow");this.$el.on("mouseover",function(){$("body").css("overflow","hidden")}).on("mouseout",function(){$("body").css("overflow",r)}),this._createContainer("div");var i=this;this.chart.on("redraw",function(){i._draw(i.chart)}),this.chart.on("set:state",function(){var e=i.$el.find("#info"),t=i.$el.find(".charts-viewport-container"),n=e.find("#icon");n.removeClass(),e.show(),e.find("#text").html(i.chart.get("state_info"));var r=i.chart.get("state");switch(r){case"ok":e.hide(),t.show();break;case"failed":n.addClass("icon fa fa-warning"),t.hide();break;default:n.addClass("icon fa fa-spinner fa-spin"),t.show()}})},show:function(){this.$el.show()},hide:function(){this.$el.hide()},_fullscreen:function(e,t){e.css("height",$(window).height()-t),$(window).resize(function(){e.css("height",$(window).height()-t)})},_createContainer:function(e,t){t=t||1;for(var n in this.container_list)this.container_list[n].remove();this.container_list=[],this.canvas_list=[];for(var n=0;n
'},_templateContainer:function(e,t){return'"}})}),define("plugin/library/screenshot",["libs/underscore"],function(e){function t(e){e.$el.find("svg").length>0?r(e):n(e)}function n(e){try{var t=e.$el.find(".jqplot-target"),n=t.jqplotToImageStr({});n&&(window.location.href=n.replace("image/png","image/octet-stream"))}catch(r){console.debug("FAILED - Screenshot::_fromCanvas() - "+r),e.error&&e.error("Please reduce your chart to a single panel and try again.")}}function r(e){var t=e.$el,n=e.url,r=e.name,s=new XMLSerializer,o=document.createElement("canvas"),u=$(o),a=t.find("svg").length,f=t.find("svg").first(),l=parseInt(f.css("height")),c=parseInt(f.css("width"));u.attr("width",c*a),u.attr("height",l),(!o.getContext||!o.getContext("2d"))&&alert("Your browser doesn't support this feature, please use a modern browser");var h=o.getContext("2d"),p=0;t.find("svg").each(function(){var e=$(this);e.attr({version:"1.1",xmlns:"http://www.w3.org/2000/svg",width:c,height:l});var t=s.serializeToString(this);h.drawSvg(t,p,0,c,l),p+=c}),window.location.href=i(o,o.getContext("2d"),"white").replace("image/png","image/octet-stream")}function i(e,t,n){var r=e.width,i=e.height,s;if(n){s=t.getImageData(0,0,r,i);var o=t.globalCompositeOperation;t.globalCompositeOperation="destination-over",t.fillStyle=n,t.fillRect(0,0,r,i)}var u=e.toDataURL("image/png");return n&&(t.clearRect(0,0,r,i),t.putImageData(s,0,0),t.globalCompositeOperation=o),u}function s(e){window.location.href="data:none/none;base64,"+btoa(a(e).string)}function o(e){for(var t in document.styleSheets){var n=document.styleSheets[t],r=n.cssRules;if(r)for(var i=0,s=r.length;i'+'
",r}})}),define("mvc/ui/ui-misc",["utils/utils","mvc/ui/ui-select-default","mvc/ui/ui-slider","mvc/ui/ui-options","mvc/ui/ui-drilldown","mvc/ui/ui-button-menu","mvc/ui/ui-modal"],function(e,t,n,r,i,s,o){var u=Backbone.View.extend({optionsDefault:{url:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options))},_template:function(e){return' '+e.title+"
"}}),l=Backbone.View.extend({optionsDefault:{id:null,title:"",floating:"right",cls:"ui-button btn btn-default",icon:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),$(this.el).on("click",function(){$(".tooltip").hide(),t.onclick&&t.onclick()}),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},_template:function(e){var t='",t}}),c=Backbone.View.extend({optionsDefault:{id:null,title:"",floating:"right",cls:"ui-button-icon",icon:"",tooltip:"",onclick:null},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.$button=this.$el.find(".button");var n=this;$(this.el).on("click",function(){$(".tooltip").hide(),t.onclick&&!n.disabled&&t.onclick()}),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},disable:function(){this.$button.addClass("disabled"),this.disabled=!0},enable:function(){this.$button.removeClass("disabled"),this.disabled=!1},setIcon:function(e){this.$("i").removeClass(this.options.icon).addClass(e),this.options.icon=e},_template:function(e){var t="";e.title&&(t="width: auto;");var n='';return e.title?n+='":n+='',n+="
",n}}),h=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),$(this.el).on("click",t.onclick)},_template:function(e){return'"}}),p=Backbone.View.extend({optionsDefault:{message:null,status:"info",persistent:!1},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(""),this.options.message&&this.update(this.options)},update:function(t){this.options=e.merge(t,this.optionsDefault);if(t.message!=""){this.$el.html(this._template(this.options)),this.$el.find(".alert").append(t.message),this.$el.fadeIn(),this.timeout&&window.clearTimeout(this.timeout);if(!t.persistent){var n=this;this.timeout=window.setTimeout(function(){n.$el.is(":visible")?n.$el.fadeOut():n.$el.hide()},3e3)}}else this.$el.fadeOut()},_template:function(e){return''}}),d=Backbone.View.extend({optionsDefault:{onclick:null,searchword:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options));var n=this;this.options.onclick&&this.$el.on("submit",function(e){var t=n.$el.find("#search");n.options.onclick(t.val())})},_template:function(e){return'"+"
"}}),v=Backbone.View.extend({optionsDefault:{type:"text",placeholder:"",disabled:!1,visible:!0,cls:"",area:!1},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.options.value!==undefined&&this.value(this.options.value),this.options.disabled&&this.$el.prop("disabled",!0),this.options.visible||this.$el.hide();var n=this;this.$el.on("input",function(){n.options.onchange&&n.options.onchange(n.$el.val())})},value:function(e){return e!==undefined&&this.$el.val(e),this.$el.val()},_template:function(e){return e.area?'':''}}),m=Backbone.View.extend({initialize:function(e){this.options=e,this.setElement(this._template(this.options)),this.options.value!==undefined&&this.value(this.options.value)},value:function(e){return e!==undefined&&this.$("hidden").val(e),this.$("hidden").val()},_template:function(e){var t='';return e.info&&(t+=""),t+='
",t}}),g=Backbone.View.extend({optionsDefault:{class_add:"fa fa-square-o",class_remove:"fa fa-check-square-o",class_partial:"fa fa-minus-square-o",value:!1},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement($("")),this.value(Boolean(this.options.value));var n=this;this.$el.on("click",function(){n.value(!n.current)})},value:function(e){return e!==undefined&&(this.current=e,e?this.$el.removeClass().addClass("ui-checkbutton").addClass(this.options.class_remove):this.$el.removeClass().addClass("ui-checkbutton").addClass(this.options.class_add),this.options.onchange&&this.options.onchange(e)),this.current}});return{Anchor:h,Button:l,ButtonIcon:c,ButtonMenu:s,Icon:f,Image:u,Input:v,Label:a,Message:p,Modal:o,RadioButton:r.RadioButton,Checkbox:r.Checkbox,Radio:r.Radio,CheckButton:g,Searchbox:d,Select:t,Hidden:m,Slider:n,Drilldown:i}}),define("plugin/library/jobs",["utils/utils"],function(e){return Backbone.Model.extend({initialize:function(t,n){this.app=t,this.options=e.merge(n,this.optionsDefault)},request:function(e,t,n,r,i){var s=this;e.state("wait","Requesting job results...");var o=e.get("dataset_id_job");o!=""?s._wait(e,r,i):s._submit(e,t,n,r,i)},cleanup:function(t){var n=this,r=t.get("dataset_id_job");r!=""&&(e.request({type:"PUT",url:config.root+"api/histories/none/contents/"+r,data:{deleted:!0},success:function(){n._refreshHdas()}}),t.set("dataset_id_job",""))},_submit:function(t,n,r,i,s){var o=this,u=t.id,a=t.get("type"),f=t.definition;data={tool_id:"charts",inputs:{input:{id:t.get("dataset_id"),src:"hda"},module:f.execute,columns:r,settings:n}},t.state("wait","Sending job request..."),e.request({type:"POST",url:config.root+"api/tools",data:data,success:function(e){if(!e.outputs||e.outputs.length==0)t.state("failed","Job submission failed. No response."),s&&s();else{o._refreshHdas();var n=e.outputs[0];t.state("wait","Your job has been queued. You may close the browser window. The job will run in the background."),t.set("dataset_id_job",n.id),o.app.storage.save(),o._wait(t,i,s)}},error:function(e){var n="";e&&e.message&&e.message.data&&e.message.data.input&&(n=e.message.data.input+"."),t.state("failed","This visualization requires the 'charts' tool. Please make sure it is installed. "+n),s&&s()}})},_wait:function(t,n,r){var i=this;e.request({type:"GET",url:config.root+"api/datasets/"+t.get("dataset_id_job"),data:{},success:function(e){var s=!1;switch(e.state){case"ok":t.state("wait","Job completed successfully..."),n&&n(e),s=!0;break;case"error":t.state("failed","Job has failed. Please check the history for details."),r&&r(e),s=!0;break;case"running":t.state("wait","Your job is running. You may close the browser window. The job will continue in the background.")}s||setTimeout(function(){i._wait(t,n,r)},i.app.config.get("query_timeout"))}})},_refreshHdas:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.refreshContents()}})}),define("plugin/library/datasets",["utils/utils"],function(e){return Backbone.Collection.extend({list:{},cache:{},initialize:function(t,n){this.app=t,this.options=e.merge(n,this.optionsDefault)},request:function(e){e.groups?this._get_blocks(e):this._get_dataset(e.id,e.success,e.error)},_get_blocks:function(e){function c(i){l._get(i,function(){var s=!1;for(var o in e.groups){destination_group=e.groups[o],source_group=i.groups[o],destination_group.values||(destination_group.values=[]),destination_group.values=destination_group.values.concat(source_group.values);if(source_group.values.length==0){s=!0;break}}if(++f"}});return{View:t}}),define("plugin/views/group",["mvc/ui/ui-table","mvc/ui/ui-misc","utils/utils"],function(e,t,n){return Backbone.View.extend({initialize:function(n,r){this.app=n;var i=this;this.chart=this.app.chart,this.group=r.group,this.group_key=new t.Input({placeholder:"Data label",onchange:function(e){i.group.set("key",e)}}),this.table=new e.View({content:"No data column."});var s=$("");s.append((new t.Label({title:"Provide a label:"})).$el),s.append(this.group_key.$el.addClass("ui-bottom-margin")),s.append((new t.Label({title:"Select columns:"})).$el.addClass("ui-top-margin")),s.append(this.table.$el.addClass("ui-bottom-margin")),this.setElement(s);var i=this;this.chart.on("change:dataset_id",function(){i._refreshTable()}),this.chart.on("change:type",function(){i._refreshTable()}),this.group.on("change:key",function(){i._refreshGroupKey()}),this.group.on("change",function(){i._refreshGroup()}),this._refreshTable(),this._refreshGroupKey(),this._refreshGroup()},_refreshTable:function(){var e=this.chart.get("dataset_id"),n=this.chart.get("type");if(!e||!n)return;var r=this,i=this.chart.definition;this.table.delAll();var s={};for(var o in i.columns){var u=i.columns[o];if(!u){console.debug("Group::_refreshTable() - Skipping column definition.");continue}var a=new t.Select.View({id:"select_"+o,wait:!0}),f=u.title;u.is_unique&&(f+=" (all data labels)"),this.table.add(f,"25%"),this.table.add(a.$el),this.table.append(o),s[o]=a}this.chart.state("wait","Loading metadata...");var l=this.app.deferred.register(),c={id:e,success:function(e){for(var t in s)r._addRow(t,e,s,i.columns[t]);r.chart.state("ok","Metadata initialized..."),r.app.deferred.done(l)}};this.app.datasets.request(c)},_addRow:function(e,t,n,r){var i=this,s=r.is_label,o=r.is_auto,u=r.is_numeric,a=r.is_unique,f=r.is_zero,l=[],c=n[e];o&&l.push({label:"Column: Row Number",value:"auto"}),f&&l.push({label:"Column: None",value:"zero"});var h=t.metadata_column_types;for(var p in h){var d=!1;h[p]=="int"||h[p]=="float"?d=u:d=s,d&&l.push({label:"Column: "+(parseInt(p)+1)+" ["+h[p]+"]",value:p})}c.update(l),a&&this.chart.groups.first()&&this.group.set(e,this.chart.groups.first().get(e));if(!c.exists(this.group.get(e))){var v=c.first();console.debug('Group()::_addRow() - Switching model value from "'+this.group.get(e)+'" to "'+v+'".'),this.group.set(e,v)}c.value(this.group.get(e)),this.group.off("change:"+e),this.group.on("change:"+e,function(){c.value(i.group.get(e))}),c.setOnChange(function(t){a?i.chart.groups.each(function(n){n.set(e,t)}):i.group.set(e,t),i.chart.set("modified",!0)}),c.show()},_refreshGroup:function(){this.group.set("date",n.time())},_refreshGroupKey:function(){var e=this.group.get("key");e===undefined&&(e=""),e!=this.group_key.value()&&this.group_key.value(e)}})}),define("plugin/library/ui-table-form",["mvc/ui/ui-table","mvc/ui/ui-misc","utils/utils"],function(e,t,n){var r=Backbone.View.extend({optionsDefault:{title:"",content:"",mode:""},list:[],initialize:function(r,i){this.app=r,this.options=n.merge(i,this.optionsDefault),this.table_title=new t.Label({title:this.options.title}),this.table=new e.View({content:this.options.content});var s=$('');this.options.title&&s.append(this.table_title.$el),s.append(this.table.$el),this.setElement(s)},title:function(e){this.table_title.title(e)},update:function(e,t){this.table.delAll(),this.list=[];for(var n in e)this._add(e[n].id||n,e[n],t);for(var n in this.list)this.list[n].trigger("change")},_add:function(e,n,r){var i=this,s=null,o=n.type;switch(o){case"text":s=new t.Input({id:"field-"+e,placeholder:n.placeholder,value:r.get(e),onchange:function(t){r.set(e,t)}});break;case"radiobutton":s=new t.RadioButton.View({id:"field-"+e,data:n.data,value:r.get(e),onchange:function(t){r.set(e,t);var s=_.findWhere(n.data,{value:t});if(s&&s.operations){var o=s.operations;for(var u in o.show){var a=o.show[u];i.table.get(a).show()}for(var u in o.hide){var a=o.hide[u];i.table.get(a).hide()}}}});break;case"select":s=new t.Select.View({id:"field-"+e,data:n.data,value:r.get(e),onchange:function(t){r.set(e,t);var s=_.findWhere(n.data,{value:t});if(s&&s.operations){var o=s.operations;for(var u in o.show){var a=o.show[u];i.table.get(a).show()}for(var u in o.hide){var a=o.hide[u];i.table.get(a).hide()}}}});break;case"dataset":s=new t.Select.View({id:"field-"+e,onchange:function(t){r.set(e,t)}}),i.app.datasets.on("all",function(){var t=[];i.app.datasets.each(function(e){e.get("datatype_id")==n.data&&t.push({value:e.get("id"),label:e.get("name")})}),s.update(t),r.get(e)||r.set(e,s.first()),s.value(r.get(e))}),i.app.datasets.trigger("all.datasets");break;case"textarea":s=new t.Textarea({id:"field-"+e,onchange:function(){r.set(e,s.value())}});break;case"separator":s=$("");break;default:s=new t.Input({id:"field-"+e,placeholder:n.placeholder,type:n.type,onchange:function(){r.set(e,s.value())}})}if(o!="separator"){r.get(e)||r.set(e,n.init),s.value(r.get(e)),this.list[e]=s;var u=$("");u.append(s.$el),n.info&&u.append('
'+n.info+"
"),this.options.style=="bold"?(this.table.add((new t.Label({title:n.title,cls:"form-label"})).$el),this.table.add(u)):(this.table.add(''+n.title+"","25%"),this.table.add(u))}else this.table.add(''+n.title+":"),this.table.add($(""));this.table.append(e),n.hide&&this.table.get(e).hide()}});return{View:r}}),define("plugin/views/settings",["mvc/ui/ui-misc","plugin/library/ui-table-form","utils/utils"],function(e,t,n){return Backbone.View.extend({initialize:function(e,n){this.app=e;var r=this;this.chart=this.app.chart,this.form=new t.View(e,{title:"Configuration",content:"This chart type does not provide any options."}),this.setElement(this.form.$el);var r=this;this.chart.on("change",function(){r._refresh()})},_refresh:function(){var e=this.chart.definition;if(!e)return;this.form.title(e.category+" - "+e.title+":"),this.form.update(e.settings,this.chart.settings)}})}),define("plugin/views/types",["utils/utils","mvc/ui/ui-misc"],function(e,t){return Backbone.View.extend({optionsDefault:{onchange:null,ondblclick:null},events:{click:"_onclick",dblclick:"_ondblclick"},initialize:function(n,r){var i=this;this.app=n,this.options=e.merge(r,this.optionsDefault);var s=$('');s.append((new t.Label({title:"How many data points would you like to analyze?"})).$el),this.library=new t.RadioButton.View({data:[{label:"Few (<500)",value:"small"},{label:"Some (<10k)",value:"medium"},{label:"Many (>10k)",value:"large"}],onchange:function(e){i._filter(e)}}),s.append(this.library.$el.addClass("ui-bottom-margin")),this.setElement(s),this._render(),this.library.value("small"),this.library.trigger("change")},value:function(e){var t=this.$el.find(".current").attr("id");e!==undefined&&(this.$el.find(".current").removeClass("current"),this.$el.find("#"+e).addClass("current"));var n=this.$el.find(".current").attr("id");return n===undefined?null:(n!=t&&this.options.onchange&&this.options.onchange(e),n)},_filter:function(e){this.$el.find(".header").hide();var t=this.app.types.attributes;for(var n in t){var r=t[n],i=this.$el.find("#"+n),s=this.$el.find("#types-header-"+this.categories_index[r.category]),o=r.keywords||"";o.indexOf(e)>=0?(i.show(),s.show()):i.hide()}},_render:function(){this.categories={},this.categories_index={};var e=0,t=this.app.types.attributes;for(var n in t){var r=t[n],i=r.category;this.categories[i]||(this.categories[i]={},this.categories_index[i]=e++),this.categories[i][n]=r}for(var i in this.categories){var s=$('');s.append(this._template_header({id:"types-header-"+this.categories_index[i],title:i}));for(var n in this.categories[i]){var r=this.categories[i][n],o=r.title+" ("+r.library+")";r.zoomable&&(o=''+o),s.append(this._template_item({id:n,title:o,url:config.app_root+"charts/"+this.app.chartPath(n)+"/logo.png"}))}this.$el.append(s)}},_onclick:function(e){var t=this.value(),n=$(e.target).closest(".item").attr("id");n!=""&&n&&t!=n&&this.value(n)},_ondblclick:function(e){var t=this.value();t&&this.options.ondblclick&&this.options.ondblclick(t)},_template_header:function(e){return'
'+"• "+e.title+"
"},_template_item:function(e){return'
'+''+'
'+e.title+"
"+""}})}),define("plugin/views/editor",["mvc/ui/ui-tabs","mvc/ui/ui-misc","mvc/ui/ui-portlet","utils/utils","plugin/models/chart","plugin/models/group","plugin/views/group","plugin/views/settings","plugin/views/types"],function(e,t,n,r,i,s,o,u,a){return Backbone.View.extend({initialize:function(r,i){var s=this;this.app=r,this.chart=this.app.chart,this.message=new t.Message,this.portlet=new n.View({icon:"fa-bar-chart-o",title:"Editor",operations:{save:new t.ButtonIcon({icon:"fa-save",tooltip:"Draw Chart",title:"Draw",onclick:function(){s._saveChart()}}),back:new t.ButtonIcon({icon:"fa-caret-left",tooltip:"Return to Viewer",title:"Cancel",onclick:function(){s.app.go("viewer"),s.app.storage.load()}})}}),this.types=new a(r,{onchange:function(e){var t=s.app.types.get(e);t||console.debug("FAILED - Editor::onchange() - Chart type not supported."),s.chart.definition=t,s.chart.settings.clear(),s.chart.set({type:e}),s.chart.set("modified",!0),console.debug("Editor::onchange() - Switched chart type.")},ondblclick:function(e){s._saveChart()}}),this.tabs=new e.View({title_new:"Add Data",onnew:function(){var e=s._addGroupModel();s.tabs.show(e.id)}}),this.title=new t.Input({placeholder:"Chart title",onchange:function(){s.chart.set("title",s.title.value())}});var o=$("");o.append((new t.Label({title:"Provide a chart title:"})).$el),o.append(this.title.$el),o.append($("").addClass("ui-table-form-info").html("This title will appear in the list of 'Saved Visualizations'. Charts are saved upon creation.")),o.append(this.types.$el.addClass("ui-top-margin")),this.tabs.add({id:"main",title:"Start",$el:o}),this.settings=new u(this.app),this.tabs.add({id:"settings",title:"Configuration",$el:this.settings.$el}),this.portlet.append(this.message.$el.addClass("ui-top-margin")),this.portlet.append(this.tabs.$el.addClass("ui-top-margin")),this.setElement(this.portlet.$el),this.tabs.hideOperation("back");var s=this;this.chart.on("change:title",function(e){s._refreshTitle()}),this.chart.on("change:type",function(e){s.types.value(e.get("type"))}),this.chart.on("reset",function(e){s._resetChart()}),this.app.chart.on("redraw",function(e){s.portlet.showOperation("back")}),this.app.chart.groups.on("add",function(e){s._addGroup(e)}),this.app.chart.groups.on("remove",function(e){s._removeGroup(e)}),this.app.chart.groups.on("reset",function(e){s._removeAllGroups()}),this.app.chart.groups.on("change:key",function(e){s._refreshGroupKey()}),this._resetChart()},show:function(){this.$el.show()},hide:function(){this.$el.hide()},_refreshTitle:function(){var e=this.chart.get("title");this.portlet.title(e),this.title.value()!=e&&this.title.value(e)},_refreshGroupKey:function(){var e=this,t=0;this.chart.groups.each(function(n){var r=n.get("key","");r==""&&(r="Data label"),e.tabs.title(n.id,++t+": "+r)})},_addGroupModel:function(){var e=new s({id:r.uuid()});return this.chart.groups.add(e),e},_addGroup:function(e){var t=this,n=new o(this.app,{group:e});this.tabs.add({id:e.id,$el:n.$el,ondel:function(){t.chart.groups.remove(e.id)}}),this._refreshGroupKey(),this.chart.set("modified",!0)},_removeGroup:function(e){this.tabs.del(e.id),this._refreshGroupKey(),this.chart.set("modified",!0)},_removeAllGroups:function(e){this.tabs.delRemovable()},_resetChart:function(){this.chart.set("id",r.uuid()),this.chart.set("type","nvd3_bar"),this.chart.set("dataset_id",this.app.options.config.dataset_id),this.chart.set("title","New Chart"),this.portlet.hideOperation("back")},_saveChart:function(){this.chart.set({type:this.types.value(),title:this.title.value(),date:r.time()});if(this.chart.groups.length==0){this.message.update({message:"Please select data columns before drawing the chart."});var e=this._addGroupModel();this.tabs.show(e.id);return}var t=this,n=!0,i=this.chart.definition;this.chart.groups.each(function(e){if(!n)return;for(var r in i.columns)if(e.attributes[r]=="null"){t.message.update({status:"danger",message:"This chart type requires column types not found in your tabular file."}),t.tabs.show(e.id),n=!1;return}});if(!n)return;this.app.go("viewer");var t=this;this.app.deferred.execute(function(){t.app.storage.save(),t.chart.trigger("redraw")})}})}),define("plugin/models/config",[],function(){return Backbone.Model.extend({defaults:{query_limit:1e4,query_timeout:100}})}),define("plugin/charts/forms/default",[],function(){return{title:"",category:"",library:"",tag:"",keywords:"",settings:{separator_x:{title:"X axis",type:"separator"},x_axis_label:{title:"Axis label",info:"Provide a label for the axis.",type:"text",init:"X-axis",placeholder:"Axis label"},x_axis_type:{title:"Axis value type",info:"Select the value type of the axis.",type:"select",init:"auto",data:[{label:"-- Do not show values --",value:"hide",operations:{hide:["x_axis_precision"]}},{label:"Auto",value:"auto",operations:{hide:["x_axis_precision"]}},{label:"Float",value:"f",operations:{show:["x_axis_precision"]}},{label:"Exponent",value:"e",operations:{show:["x_axis_precision"]}},{label:"Integer",value:"d",operations:{hide:["x_axis_precision"]}},{label:"Percentage",value:"p",operations:{show:["x_axis_precision"]}},{label:"SI-prefix",value:"s",operations:{hide:["x_axis_precision"]}}]},x_axis_precision:{title:"Axis tick format",info:"Select the tick format for the axis.",type:"select",init:"1",data:[{label:"0.00001",value:"5"},{label:"0.0001",value:"4"},{label:"0.001",value:"3"},{label:"0.01",value:"2"},{label:"0.1",value:"1"},{label:"1",value:"0"}]},separator_y:{title:"Y axis",type:"separator"},y_axis_label:{title:"Axis label",info:"Provide a label for the axis.",type:"text",init:"Y-axis",placeholder:"Axis label"},y_axis_type:{title:"Axis value type",info:"Select the value type of the axis.",type:"select",init:"auto",data:[{label:"-- Do not show values --",value:"hide",operations:{hide:["y_axis_precision"]}},{label:"Auto",value:"auto",operations:{hide:["y_axis_precision"]}},{label:"Float",value:"f",operations:{show:["y_axis_precision"]}},{label:"Exponent",value:"e",operations:{show:["y_axis_precision"]}},{label:"Integer",value:"d",operations:{hide:["y_axis_precision"]}},{label:"Percentage",value:"p",operations:{show:["y_axis_precision"]}},{label:"SI-prefix",value:"s",operations:{hide:["y_axis_precision"]}}]},y_axis_precision:{title:"Axis tick format",info:"Select the tick format for the axis.",type:"select",init:"1",data:[{label:"0.00001",value:"5"},{label:"0.0001",value:"4"},{label:"0.001",value:"3"},{label:"0.01",value:"2"},{label:"0.1",value:"1"},{label:"1",value:"0"}]},separator_legend:{title:"Others",type:"separator"},show_legend:{title:"Show legend",info:"Would you like to add a legend?",type:"radiobutton",init:"true",data:[{label:"Yes",value:"true"},{label:"No",value:"false"}]},use_panels:{title:"Use multi-panels",info:"Would you like to separate your data into individual panels?",type:"radiobutton",init:"false",data:[{label:"Yes",value:"true"},{label:"No",value:"false"}]}}}}),function(){function t(e,t){return(new Date(t,e+1,0)).getDate()}function n(e,t,n){return function(r,i,s){var o=e(r),u=[];o1)while(op||r>d||d3.event.relatedTarget&&d3.event.relatedTarget.ownerSVGElement===undefined||a){if(l&&d3.event.relatedTarget&&d3.event.relatedTarget.ownerSVGElement===undefined&&d3.event.relatedTarget.className.match(t.nvPointerEventsClass))return;u.elementMouseout({mouseX:n,mouseY:r}),c.renderGuideLine(null);return}var f=s.invert(n);u.elementMousemove({mouseX:n,mouseY:r,pointXValue:f}),d3.event.type==="dblclick"&&u.elementDblclick({mouseX:n,mouseY:r,pointXValue:f})}var 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s&&s>0&&(u=Math.floor(u/s)*s),e.tooltip.calcTooltipPosition([t,u],r,i,h),w}var t=null,n=null,r="w",i=50,s=25,o=null,u=null,a=null,f=null,l={left:null,top:null},c=!0,h="nvtooltip-"+Math.floor(Math.random()*1e5),p="nv-pointer-events-none",d=function(e,t){return e},v=function(e){return e},m=function(e){if(t!=null)return t;if(e==null)return"";var n=d3.select(document.createElement("table")),r=n.selectAll("thead").data([e]).enter().append("thead");r.append("tr").append("td").attr("colspan",3).append("strong").classed("x-value",!0).html(v(e.value));var i=n.selectAll("tbody").data([e]).enter().append("tbody"),s=i.selectAll("tr").data(function(e){return e.series}).enter().append("tr").classed("highlight",function(e){return e.highlight});s.append("td").classed("legend-color-guide",!0).append("div").style("background-color",function(e){return e.color}),s.append("td").classed("key",!0).html(function(e){return e.key}),s.append("td").classed("value",!0).html(function(e,t){return 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e.color||c(e,t)}).filter(function(t,n){return!e[n].disabled})),R.select(".nv-distWrap").append("g").attr("class","nv-distributionY"),U.select(".nv-distributionY").attr("transform","translate("+(b?C:-u.size())+",0)").datum(e.filter(function(e){return!e.disabled})).call(u)),d3.fisheye&&(U.select(".nv-background").attr("width",C).attr("height",M),U.select(".nv-background").on("mousemove",V),U.select(".nv-background").on("click",function(){S=!S}),t.dispatch.on("elementClick.freezeFisheye",function(){S=!S})),s.dispatch.on("legendClick",function(e,i){e.disabled=!e.disabled,E=e.disabled?0:2.5,U.select(".nv-background").style("pointer-events",e.disabled?"none":"all"),U.select(".nv-point-paths").style("pointer-events",e.disabled?"all":"none"),e.disabled?(h.distortion(E).focus(0),p.distortion(E).focus(0),U.select(".nv-scatterWrap").call(t),U.select(".nv-x.nv-axis").call(n),U.select(".nv-y.nv-axis").call(r)):S=!1,B.update()}),i.dispatch.on("stateChange",function(e){k=e,A.stateChange(k),B.update()}),t.dispatch.on("elementMouseover.tooltip",function(e){d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" .nv-distx-"+e.pointIndex).attr("y1",e.pos[1]-M),d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" .nv-disty-"+e.pointIndex).attr("x2",e.pos[0]+o.size()),e.pos=[e.pos[0]+a.left,e.pos[1]+a.top],A.tooltipShow(e)}),A.on("tooltipShow",function(e){x&&P(e,N.parentNode)}),A.on("changeState",function(t){typeof t.disabled!="undefined"&&(e.forEach(function(e,n){e.disabled=t.disabled[n]}),k.disabled=t.disabled),B.update()}),_=h.copy(),D=p.copy()}),B}var t=e.models.scatter(),n=e.models.axis(),r=e.models.axis(),i=e.models.legend(),s=e.models.legend(),o=e.models.distribution(),u=e.models.distribution(),a={top:30,right:20,bottom:50,left:75},f=null,l=null,c=e.utils.defaultColor(),h=d3.fisheye?d3.fisheye.scale(d3.scale.linear).distortion(0):t.xScale(),p=d3.fisheye?d3.fisheye.scale(d3.scale.linear).distortion(0):t.yScale(),d=!1,v=!1,m=!0,g=!0,y=!0,b=!1,w=!!d3.fisheye,E=0,S=!1,x=!0,T=function(e,t,n){return""+t+""},N=function(e,t,n){return""+n+""},C=function(e,t,n,r){return"2){var h=M.yScale().invert(i.mouseY),p=Infinity,d=null;c.forEach(function(e,t){h=Math.abs(h);var n=Math.abs(e.stackedValue.y0),r=Math.abs(e.stackedValue.y);if(h>=n&&h<=r+n){d=t;return}}),d!=null&&(c[d].highlight=!0)}var v=n.tickFormat()(M.x()(s,a)),m=t.style()=="expand"?function(e,t){return d3.format(".1%")(e)}:function(e,t){return r.tickFormat()(e)};o.tooltip.position({left:f+u.left,top:i.mouseY+u.top}).chartContainer(_.parentNode).enabled(g).valueFormatter(m).data({value:v,series:c})(),o.renderGuideLine(f)}),o.dispatch.on("elementMouseout",function(e){N.tooltipHide(),t.clearHighlights()}),N.on("tooltipShow",function(e){g&&O(e,_.parentNode)}),N.on("changeState",function(e){typeof e.disabled!="undefined"&&y.length===e.disabled.length&&(y.forEach(function(t,n){t.disabled=e.disabled[n]}),S.disabled=e.disabled),typeof e.style!="undefined"&&t.style(e.style),M.update()})}),M}var t=e.models.stackedArea(),n=e.models.axis(),r=e.models.axis(),i=e.models.legend(),s=e.models.legend(),o=e.interactiveGuideline(),u={top:30,right:25,bottom:50,left:60},a=null,f=null,l=e.utils.defaultColor(),c=!0,h=!0,p=!0,d=!0,v=!1,m=!1,g=!0,y=function(e,t,n,r,i){return"=j)}var k=new f(this.app,{label:p.title,help:p.help,field:l});this.table.add(k.$el);this.table.append(p.id)},_addSection:function(i){var j=this;var n=new g(j.app,{inputs:i.inputs});var m=new h.ButtonIcon({icon:"fa-eye-slash",tooltip:"Show/hide section",cls:"ui-button-icon-plain"});var l=new d.View({title:i.label,cls:"ui-portlet-section",operations:{button_visible:m}});l.append(n.$el);l.append($("").addClass("ui-table-form-info").html(i.help));var k=false;l.$content.hide();l.$header.css("cursor","pointer");l.$header.on("click",function(){if(k){k=false;l.$content.hide();m.setIcon("fa-eye-slash")}else{k=true;l.$content.fadeIn("fast");m.setIcon("fa-eye")}});if(i.expand){l.$header.trigger("click")}this.table.add(l.$el);this.table.append(i.id)},_addRow:function(i){var l=i.id;var j=this._createField(i);this.app.field_list[l]=j;if(i.default_value===undefined){i.default_value=i.value}var k=new f(this.app,{label:i.label,default_value:i.default_value,optional:i.optional,help:i.help,field:j});this.app.element_list[l]=k;this.table.add(k.$el);this.table.append(l);if(i.hidden){this.table.get(l).hide()}return j},_createField:function(i){var j=null;switch(i.type){case"text":j=this._fieldText(i);break;case"select":j=this._fieldSelect(i);break;case"data":j=this._fieldData(i);break;case"data_collection":j=this._fieldData(i);break;case"data_column":i.error_text="Missing columns in referenced dataset.";j=this._fieldSelect(i);break;case"hidden":j=this._fieldHidden(i);break;case"hidden_data":j=this._fieldHidden(i);break;case"integer":j=this._fieldSlider(i);break;case"float":j=this._fieldSlider(i);break;case"boolean":j=this._fieldBoolean(i);break;case"genomebuild":i.searchable=true;j=this._fieldSelect(i);break;case"drill_down":j=this._fieldDrilldown(i);break;case"baseurl":j=this._fieldHidden(i);break;default:this.app.incompatible=true;if(i.options){j=this._fieldSelect(i)}else{j=this._fieldText(i)}console.debug("tools-form::_addRow() : Auto matched field type ("+i.type+").")}if(i.value!==undefined){j.value(i.value)}return j},_fieldData:function(i){if(!this.app.options.is_dynamic){i.info="Data input '"+i.name+"' ("+e.textify(i.extensions.toString())+")";i.value=null;return this._fieldHidden(i)}var j=this;return new a.View(this.app,{id:"field-"+i.id,extensions:i.extensions,optional:i.optional,multiple:i.multiple,type:i.type,data:i.options,onchange:function(){j.app.trigger("refresh")}})},_fieldSelect:function(j){if(!this.app.options.is_dynamic&&j.is_dynamic){return this._fieldText(j)}var l=[];for(var m in j.options){var n=j.options[m];l.push({label:n[0],value:n[1]})}var o=h.Select;switch(j.display){case"checkboxes":o=h.Checkbox;break;case"radio":o=h.Radio;break}var k=this;return new o.View({id:"field-"+j.id,data:l,error_text:j.error_text||"No options available",multiple:j.multiple,searchable:j.searchable,onchange:function(){k.app.trigger("refresh")}})},_fieldDrilldown:function(i){if(!this.app.options.is_dynamic&&i.is_dynamic){return this._fieldText(i)}var j=this;return new h.Drilldown.View({id:"field-"+i.id,data:i.options,display:i.display,onchange:function(){j.app.trigger("refresh")}})},_fieldText:function(i){if(i.options){i.area=i.multiple;if(!e.validate(i.value)){i.value=""}else{if(i.value instanceof Array){i.value=value.toString()}else{i.value=String(i.value).replace(/[\[\]'"\s]/g,"");if(i.multiple){i.value=i.value.replace(/,/g,"\n")}}}}var j=this;return new h.Input({id:"field-"+i.id,area:i.area,onchange:function(){j.app.trigger("refresh")}})},_fieldSlider:function(i){var j=this;return new h.Slider.View({id:"field-"+i.id,precise:i.type=="float",min:i.min,max:i.max,onchange:function(){j.app.trigger("refresh")}})},_fieldHidden:function(i){return new h.Hidden({id:"field-"+i.id,info:i.info})},_fieldBoolean:function(i){var j=this;return new h.RadioButton.View({id:"field-"+i.id,data:[{label:"Yes",value:"true"},{label:"No",value:"false"}],onchange:function(){j.app.trigger("refresh")}})}});return{View:g}});
\ No newline at end of file
+define(["utils/utils","mvc/ui/ui-table","mvc/ui/ui-misc","mvc/ui/ui-portlet","mvc/tools/tools-repeat","mvc/tools/tools-select-content","mvc/tools/tools-input"],function(e,b,h,d,c,a,f){var g=Backbone.View.extend({initialize:function(j,i){this.app=j;this.inputs=i.inputs;i.cls="ui-table-plain";i.cls_tr="section-row";this.table=new b.View(i);this.setElement(this.table.$el);this.render()},render:function(){this.table.delAll();for(var j in this.inputs){this.add(this.inputs[j])}},add:function(k){var j=this;var i=jQuery.extend(true,{},k);i.id=k.id=e.uuid();this.app.input_list[i.id]=i;var l=i.type;switch(l){case"conditional":this._addConditional(i);break;case"repeat":this._addRepeat(i);break;case"section":this._addSection(i);break;default:this._addRow(i)}},_addConditional:function(j){var k=this;j.test_param.id=j.id;var n=this._addRow(j.test_param);n.options.onchange=function(w){var v=k.app.tree.matchCase(j,w);for(var u in j.cases){var q=j.cases[u];var t=j.id+"-section-"+u;var p=k.table.get(t);var s=false;for(var r in q.inputs){if(!q.inputs[r].hidden){s=true;break}}if(u==v&&s){p.fadeIn("fast")}else{p.hide()}}k.app.trigger("refresh")};for(var m in j.cases){var l=j.id+"-section-"+m;var o=new g(this.app,{inputs:j.cases[m].inputs});o.$el.addClass("ui-table-section");this.table.add(o.$el);this.table.append(l)}n.trigger("change")},_addRepeat:function(p){var s=this;var q=0;function n(i,u){var t=p.id+"-section-"+(q++);var v=null;if(u){v=function(){l.del(t);l.retitle(p.title);s.app.trigger("refresh")}}var w=new g(s.app,{inputs:i});l.add({id:t,title:p.title,$el:w.$el,ondel:v});l.retitle(p.title)}var l=new c.View({title_new:p.title,max:p.max,onnew:function(){n(p.inputs,true);s.app.trigger("refresh")}});var j=p.min;var r=_.size(p.cache);for(var m=0;m=j)}var k=new f(this.app,{label:p.title,help:p.help,field:l});this.table.add(k.$el);this.table.append(p.id)},_addSection:function(i){var j=this;var n=new g(j.app,{inputs:i.inputs});var m=new h.ButtonIcon({icon:"fa-eye-slash",tooltip:"Show/hide section",cls:"ui-button-icon-plain"});var l=new d.View({title:i.label,cls:"ui-portlet-section",operations:{button_visible:m}});l.append(n.$el);l.append($("").addClass("ui-table-form-info").html(i.help));var k=false;l.$content.hide();l.$header.css("cursor","pointer");l.$header.on("click",function(){if(k){k=false;l.$content.hide();m.setIcon("fa-eye-slash")}else{k=true;l.$content.fadeIn("fast");m.setIcon("fa-eye")}});if(i.expand){l.$header.trigger("click")}this.table.add(l.$el);this.table.append(i.id)},_addRow:function(i){var l=i.id;var j=this._createField(i);this.app.field_list[l]=j;if(i.default_value===undefined){i.default_value=i.value}var k=new f(this.app,{label:i.label,default_value:i.default_value,optional:i.optional,help:i.help,field:j});this.app.element_list[l]=k;this.table.add(k.$el);this.table.append(l);if(i.hidden){this.table.get(l).hide()}return j},_createField:function(i){var j=null;switch(i.type){case"text":j=this._fieldText(i);break;case"select":j=this._fieldSelect(i);break;case"data":j=this._fieldData(i);break;case"data_collection":j=this._fieldData(i);break;case"data_column":i.error_text="Missing columns in referenced dataset.";j=this._fieldSelect(i);break;case"hidden":j=this._fieldHidden(i);break;case"hidden_data":j=this._fieldHidden(i);break;case"integer":j=this._fieldSlider(i);break;case"float":j=this._fieldSlider(i);break;case"boolean":j=this._fieldBoolean(i);break;case"genomebuild":i.searchable=true;j=this._fieldSelect(i);break;case"drill_down":j=this._fieldDrilldown(i);break;case"baseurl":j=this._fieldHidden(i);break;default:this.app.incompatible=true;if(i.options){j=this._fieldSelect(i)}else{j=this._fieldText(i)}console.debug("tools-form::_addRow() : Auto matched field type ("+i.type+").")}if(i.value!==undefined){j.value(i.value)}return j},_fieldData:function(i){if(!this.app.options.is_dynamic){i.info="Data input '"+i.name+"' ("+e.textify(i.extensions.toString())+")";i.value=null;return this._fieldHidden(i)}var j=this;return new a.View(this.app,{id:"field-"+i.id,extensions:i.extensions,optional:i.optional,multiple:i.multiple,type:i.type,data:i.options,onchange:function(){j.app.trigger("refresh")}})},_fieldSelect:function(j){if(!this.app.options.is_dynamic&&j.is_dynamic){return this._fieldText(j)}var l=[];for(var m in j.options){var n=j.options[m];l.push({label:n[0],value:n[1]})}var o=h.Select;switch(j.display){case"checkboxes":o=h.Checkbox;break;case"radio":o=h.Radio;break}var k=this;return new o.View({id:"field-"+j.id,data:l,error_text:j.error_text||"No options available",multiple:j.multiple,searchable:j.searchable,onchange:function(){k.app.trigger("refresh")}})},_fieldDrilldown:function(i){if(!this.app.options.is_dynamic&&i.is_dynamic){return this._fieldText(i)}var j=this;return new h.Drilldown.View({id:"field-"+i.id,data:i.options,display:i.display,onchange:function(){j.app.trigger("refresh")}})},_fieldText:function(i){if(i.options){i.area=i.multiple;if(!e.validate(i.value)){i.value=""}else{if(i.value instanceof Array){i.value=value.toString()}else{i.value=String(i.value).replace(/[\[\]'"\s]/g,"");if(i.multiple){i.value=i.value.replace(/,/g,"\n")}}}}var j=this;return new h.Input({id:"field-"+i.id,area:i.area,onchange:function(){j.app.trigger("refresh")}})},_fieldSlider:function(i){var j=this;return new h.Slider.View({id:"field-"+i.id,precise:i.type=="float",min:i.min,max:i.max,onchange:function(){j.app.trigger("refresh")}})},_fieldHidden:function(i){return new h.Hidden({id:"field-"+i.id,info:i.info})},_fieldBoolean:function(i){var j=this;return new h.RadioButton.View({id:"field-"+i.id,data:[{label:"Yes",value:"true"},{label:"No",value:"false"}],onchange:function(){j.app.trigger("refresh")}})}});return{View:g}});
\ No newline at end of file
diff --git a/static/scripts/packed/mvc/tools/tools-select-content.js b/static/scripts/packed/mvc/tools/tools-select-content.js
index 608737ae8e3..f6046cf6fb3 100644
--- a/static/scripts/packed/mvc/tools/tools-select-content.js
+++ b/static/scripts/packed/mvc/tools/tools-select-content.js
@@ -1 +1 @@
-define(["utils/utils","mvc/ui/ui-misc","mvc/ui/ui-tabs","mvc/tools/tools-template"],function(c,e,b,a){var d=Backbone.View.extend({initialize:function(l,g){this.app=l;this.options=g;var f=this;this.setElement("");this.list={};var j=[];if(g.type=="data_collection"){this.mode="collection"}else{if(g.multiple){this.mode="multiple"}else{this.mode="single"}}this.current=this.mode;this.list={};var k=c.textify(g.extensions);var n="No dataset available.";if(k){n="No "+k+" dataset available."}var m="No dataset list available.";if(k){m="No "+k+" dataset collection available."}if(this.mode=="single"){j.push({icon:"fa-file-o",label:"Single dataset",value:"single"});this.select_single=new e.Select.View({optional:g.optional,error_text:n,onchange:function(){f.trigger("change")}});this.list.single={field:this.select_single,type:"hda"}}if(this.mode=="single"||this.mode=="multiple"){j.push({icon:"fa-files-o",label:"Multiple datasets",value:"multiple"});this.select_multiple=new e.Select.View({multiple:true,error_text:n,onchange:function(){f.trigger("change")}});this.list.multiple={field:this.select_multiple,type:"hda"}}if(this.mode=="single"||this.mode=="collection"){j.push({icon:"fa-folder-o",label:"Dataset collection",value:"collection"});this.select_collection=new e.Select.View({error_text:m,optional:g.optional,onchange:function(){f.trigger("change")}});this.list.collection={field:this.select_collection,type:"hdca"}}this.button_type=new e.RadioButton.View({value:this.current,data:j,onchange:function(i){f.current=i;f.refresh();f.trigger("change")}});this.$batch=$(a.batchMode());if(_.size(this.list)>1){this.$el.append(c.wrap(this.button_type.$el))}for(var h in this.list){this.$el.append(this.list[h].field.$el)}this.$el.append(this.$batch);this.update(g.data);if(this.options.value!==undefined){this.value(this.options.value)}this.refresh();this.on("change",function(){if(g.onchange){g.onchange(f.value())}})},wait:function(){for(var f in this.list){this.list[f].field.wait()}},unwait:function(){for(var f in this.list){this.list[f].field.unwait()}},update:function(g){var l=[];for(var j in g.hda){var k=g.hda[j];l.push({label:k.hid+": "+k.name,value:k.id})}var f=[];for(var j in g.hdca){var h=g.hdca[j];f.push({label:h.hid+": "+h.name,value:h.id})}this.select_single&&this.select_single.update(l);this.select_multiple&&this.select_multiple.update(l);this.select_collection&&this.select_collection.update(f);this.app.content.add(g)},value:function(h){if(h!==undefined){if(h&&h.values){try{var l=[];for(var g in h.values){l.push(h.values[g].id)}if(h&&h.values.length>0&&h.values[0].src=="hcda"){this.current="collection";this.select_collection.value(l[0])}else{if(this.mode=="multiple"){this.current="multiple";this.select_multiple.value(l)}else{this.current="single";this.select_single.value(l[0])}}}catch(k){console.debug("tools-select-content::value() - Skipped.")}}else{this.select_single&&this.select_single.value("__null__");this.select_multiple&&this.select_multiple.value("__null__");this.select_collection&&this.select_collection.value("__null__")}this.refresh()}var j=this._select().value();if(!(j instanceof Array)){j=[j]}var f={batch:this.mode=="single"&&this.current!="single",values:[]};for(var g in j){f.values.push({id:j[g],src:this.list[this.current].type})}return f},validate:function(){return this._select().validate()},refresh:function(){this.button_type.value(this.current);for(var g in this.list){var f=this.list[g].field.$el;if(this.current==g){f.show()}else{f.hide()}}if(this.mode=="single"&&this.current!="single"){this.$batch.show()}else{this.$batch.hide()}},_select:function(){return this.list[this.current].field}});return{View:d}});
\ No newline at end of file
+define(["utils/utils","mvc/ui/ui-misc","mvc/ui/ui-tabs","mvc/tools/tools-template"],function(c,e,b,a){var d=Backbone.View.extend({initialize:function(l,g){this.app=l;this.options=g;var f=this;this.setElement("");this.list={};var j=[];if(g.type=="data_collection"){this.mode="collection"}else{if(g.multiple){this.mode="multiple"}else{this.mode="single"}}this.current=this.mode;this.list={};var k=c.textify(g.extensions);var n="No dataset available.";if(k){n="No "+k+" dataset available."}var m="No dataset list available.";if(k){m="No "+k+" dataset collection available."}if(this.mode=="single"){j.push({icon:"fa-file-o",label:"Single dataset",value:"single"});this.select_single=new e.Select.View({optional:g.optional,error_text:n,onchange:function(){f.trigger("change")}});this.list.single={field:this.select_single,type:"hda"}}if(this.mode=="single"||this.mode=="multiple"){j.push({icon:"fa-files-o",label:"Multiple datasets",value:"multiple"});this.select_multiple=new e.Select.View({multiple:true,error_text:n,onchange:function(){f.trigger("change")}});this.list.multiple={field:this.select_multiple,type:"hda"}}if(this.mode=="single"||this.mode=="collection"){j.push({icon:"fa-folder-o",label:"Dataset collection",value:"collection"});this.select_collection=new e.Select.View({error_text:m,optional:g.optional,onchange:function(){f.trigger("change")}});this.list.collection={field:this.select_collection,type:"hdca"}}this.button_type=new e.RadioButton.View({value:this.current,data:j,onchange:function(i){f.current=i;f.refresh();f.trigger("change")}});this.$batch=$(a.batchMode());if(_.size(this.list)>1){this.$el.append(this.button_type.$el.addClass("ui-bottom-margin"))}for(var h in this.list){this.$el.append(this.list[h].field.$el)}this.$el.append(this.$batch);this.update(g.data);if(this.options.value!==undefined){this.value(this.options.value)}this.refresh();this.on("change",function(){if(g.onchange){g.onchange(f.value())}})},wait:function(){for(var f in this.list){this.list[f].field.wait()}},unwait:function(){for(var f in this.list){this.list[f].field.unwait()}},update:function(g){var l=[];for(var j in g.hda){var k=g.hda[j];l.push({label:k.hid+": "+k.name,value:k.id})}var f=[];for(var j in g.hdca){var h=g.hdca[j];f.push({label:h.hid+": "+h.name,value:h.id})}this.select_single&&this.select_single.update(l);this.select_multiple&&this.select_multiple.update(l);this.select_collection&&this.select_collection.update(f);this.app.content.add(g)},value:function(h){if(h!==undefined){if(h&&h.values){try{var l=[];for(var g in h.values){l.push(h.values[g].id)}if(h&&h.values.length>0&&h.values[0].src=="hcda"){this.current="collection";this.select_collection.value(l[0])}else{if(this.mode=="multiple"){this.current="multiple";this.select_multiple.value(l)}else{this.current="single";this.select_single.value(l[0])}}}catch(k){console.debug("tools-select-content::value() - Skipped.")}}else{this.select_single&&this.select_single.value("__null__");this.select_multiple&&this.select_multiple.value("__null__");this.select_collection&&this.select_collection.value("__null__")}this.refresh()}var j=this._select().value();if(!(j instanceof Array)){j=[j]}var f={batch:this.mode=="single"&&this.current!="single",values:[]};for(var g in j){f.values.push({id:j[g],src:this.list[this.current].type})}return f},validate:function(){return this._select().validate()},refresh:function(){this.button_type.value(this.current);for(var g in this.list){var f=this.list[g].field.$el;if(this.current==g){f.show()}else{f.hide()}}if(this.mode=="single"&&this.current!="single"){this.$batch.show()}else{this.$batch.hide()}},_select:function(){return this.list[this.current].field}});return{View:d}});
\ No newline at end of file
diff --git a/static/scripts/packed/mvc/ui/ui-portlet.js b/static/scripts/packed/mvc/ui/ui-portlet.js
index 7f87a22e226..468549c447c 100644
--- a/static/scripts/packed/mvc/ui/ui-portlet.js
+++ b/static/scripts/packed/mvc/ui/ui-portlet.js
@@ -1 +1 @@
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"+t+"
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"},p="No Data Available.",d=d3.dispatch("tooltipShow","tooltipHide"),v=function(t,n){var r=t.pos[0]+(n.offsetLeft||0)+i.left,s=t.pos[1]+(n.offsetTop||0)+i.top,o=h(t.key,t.label,t.value,t,m);e.tooltip.show([r,s],o,t.value<0?"e":"w",null,n)};return t.dispatch.on("elementMouseover.tooltip",function(e){d.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){d.tooltipHide(e)}),d.on("tooltipHide",function(){c&&e.tooltip.cleanup()}),m.dispatch=d,m.bullet=t,d3.rebind(m,t,"color"),m.options=e.utils.optionsFunc.bind(m),m.orient=function(e){return arguments.length?(n=e,r=n=="right"||n=="bottom",m):n},m.ranges=function(e){return arguments.length?(s=e,m):s},m.markers=function(e){return arguments.length?(o=e,m):o},m.measures=function(e){return arguments.length?(u=e,m):u},m.width=function(e){return arguments.length?(a=e,m):a},m.height=function(e){return arguments.length?(f=e,m):f},m.margin=function(e){return arguments.length?(i.top=typeof e.top!="undefined"?e.top:i.top,i.right=typeof e.right!="undefined"?e.right:i.right,i.bottom=typeof e.bottom!="undefined"?e.bottom:i.bottom,i.left=typeof e.left!="undefined"?e.left:i.left,m):i},m.tickFormat=function(e){return arguments.length?(l=e,m):l},m.tooltips=function(e){return arguments.length?(c=e,m):c},m.tooltipContent=function(e){return arguments.length?(h=e,m):h},m.noData=function(e){return arguments.length?(p=e,m):p},m},e.models.cumulativeLineChart=function(){function D(b){return b.each(function(b){function I(e,t){d3.select(D.container).style("cursor","ew-resize")}function q(e,t){M.x=d3.event.x,M.i=Math.round(O.invert(M.x)),nt()}function R(e,t){d3.select(D.container).style("cursor","auto"),x.index=M.i,k.stateChange(x)}function nt(){tt.data([M]);var e=D.transitionDuration();D.transitionDuration(0),D.update(),D.transitionDuration(e)}var L=d3.select(this).classed("nv-chart-"+S,!0),A=this,H=(f||parseInt(L.style("width"))||960)-u.left-u.right,B=(l||parseInt(L.style("height"))||400)-u.top-u.bottom;D.update=function(){L.call(D)},D.container=this,x.disabled=b.map(function(e){return!!e.disabled});if(!T){var j;T={};for(j in x)x[j]instanceof Array?T[j]=x[j].slice(0):T[j]=x[j]}var F=d3.behavior.drag().on("dragstart",I).on("drag",q).on("dragend",R);if(!b||!b.length||!b.filter(function(e){return e.values.length}).length){var U=L.selectAll(".nv-noData").data([N]);return U.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),U.attr("x",u.left+H/2).attr("y",u.top+B/2).text(function(e){return e}),D}L.selectAll(".nv-noData").remove(),w=t.xScale(),E=t.yScale();if(!y){var z=b.filter(function(e){return!e.disabled}).map(function(e,n){var r=d3.extent(e.values,t.y());return r[0]<-0.95&&(r[0]=-0.95),[(r[0]-r[1])/(1+r[1]),(r[1]-r[0])/(1+r[0])]}),W=[d3.min(z,function(e){return e[0]}),d3.max(z,function(e){return e[1]})];t.yDomain(W)}else t.yDomain(null);O.domain([0,b[0].values.length-1]).range([0,H]).clamp(!0);var b=P(M.i,b),X=g?"none":"all",V=L.selectAll("g.nv-wrap.nv-cumulativeLine").data([b]),$=V.enter().append("g").attr("class","nvd3 nv-wrap nv-cumulativeLine").append("g"),J=V.select("g");$.append("g").attr("class","nv-interactive"),$.append("g").attr("class","nv-x nv-axis").style("pointer-events","none"),$.append("g").attr("class","nv-y nv-axis"),$.append("g").attr("class","nv-background"),$.append("g").attr("class","nv-linesWrap").style("pointer-events",X),$.append("g").attr("class","nv-avgLinesWrap").style("pointer-events","none"),$.append("g").attr("class","nv-legendWrap"),$.append("g").attr("class","nv-controlsWrap"),c&&(i.width(H),J.select(".nv-legendWrap").datum(b).call(i),u.top!=i.height()&&(u.top=i.height(),B=(l||parseInt(L.style("height"))||400)-u.top-u.bottom),J.select(".nv-legendWrap").attr("transform","translate(0,"+ -u.top+")"));if(m){var K=[{key:"Re-scale y-axis",disabled:!y}];s.width(140).color(["#444","#444","#444"]).rightAlign(!1).margin({top:5,right:0,bottom:5,left:20}),J.select(".nv-controlsWrap").datum(K).attr("transform","translate(0,"+ -u.top+")").call(s)}V.attr("transform","translate("+u.left+","+u.top+")"),d&&J.select(".nv-y.nv-axis").attr("transform","translate("+H+",0)");var Q=b.filter(function(e){return e.tempDisabled});V.select(".tempDisabled").remove(),Q.length&&V.append("text").attr("class","tempDisabled").attr("x",H/2).attr("y","-.71em").style("text-anchor","end").text(Q.map(function(e){return e.key}).join(", ")+" values cannot be calculated for this time period."),g&&(o.width(H).height(B).margin({left:u.left,top:u.top}).svgContainer(L).xScale(w),V.select(".nv-interactive").call(o)),$.select(".nv-background").append("rect"),J.select(".nv-background rect").attr("width",H).attr("height",B),t.y(function(e){return e.display.y}).width(H).height(B).color(b.map(function(e,t){return e.color||a(e,t)}).filter(function(e,t){return!b[t].disabled&&!b[t].tempDisabled}));var G=J.select(".nv-linesWrap").datum(b.filter(function(e){return!e.disabled&&!e.tempDisabled}));G.call(t),b.forEach(function(e,t){e.seriesIndex=t});var Y=b.filter(function(e){return!e.disabled&&!!C(e)}),Z=J.select(".nv-avgLinesWrap").selectAll("line").data(Y,function(e){return e.key}),et=function(e){var t=E(C(e));return t<0?0:t>B?B:t};Z.enter().append("line").style("stroke-width",2).style("stroke-dasharray","10,10").style("stroke",function(e,n){return t.color()(e,e.seriesIndex)}).attr("x1",0).attr("x2",H).attr("y1",et).attr("y2",et),Z.style("stroke-opacity",function(e){var t=E(C(e));return t<0||t>B?0:1}).attr("x1",0).attr("x2",H).attr("y1",et).attr("y2",et),Z.exit().remove();var tt=G.selectAll(".nv-indexLine").data([M]);tt.enter().append("rect").attr("class","nv-indexLine").attr("width",3).attr("x",-2).attr("fill","red").attr("fill-opacity",.5).style("pointer-events","all").call(F),tt.attr("transform",function(e){return"translate("+O(e.i)+",0)"}).attr("height",B),h&&(n.scale(w).ticks(Math.min(b[0].values.length,H/70)).tickSize(-B,0),J.select(".nv-x.nv-axis").attr("transform","translate(0,"+E.range()[0]+")"),d3.transition(J.select(".nv-x.nv-axis")).call(n)),p&&(r.scale(E).ticks(B/36).tickSize(-H,0),d3.transition(J.select(".nv-y.nv-axis")).call(r)),J.select(".nv-background rect").on("click",function(){M.x=d3.mouse(this)[0],M.i=Math.round(O.invert(M.x)),x.index=M.i,k.stateChange(x),nt()}),t.dispatch.on("elementClick",function(e){M.i=e.pointIndex,M.x=O(M.i),x.index=M.i,k.stateChange(x),nt()}),s.dispatch.on("legendClick",function(e,t){e.disabled=!e.disabled,y=!e.disabled,x.rescaleY=y,k.stateChange(x),D.update()}),i.dispatch.on("stateChange",function(e){x.disabled=e.disabled,k.stateChange(x),D.update()}),o.dispatch.on("elementMousemove",function(i){t.clearHighlights();var s,f,l,c=[];b.filter(function(e,t){return e.seriesIndex=t,!e.disabled}).forEach(function(n,r){f=e.interactiveBisect(n.values,i.pointXValue,D.x()),t.highlightPoint(r,f,!0);var o=n.values[f];if(typeof o=="undefined")return;typeof s=="undefined"&&(s=o),typeof l=="undefined"&&(l=D.xScale()(D.x()(o,f))),c.push({key:n.key,value:D.y()(o,f),color:a(n,n.seriesIndex)})});if(c.length>2){var h=D.yScale().invert(i.mouseY),p=Math.abs(D.yScale().domain()[0]-D.yScale().domain()[1]),d=.03*p,m=e.nearestValueIndex(c.map(function(e){return e.value}),h,d);m!==null&&(c[m].highlight=!0)}var g=n.tickFormat()(D.x()(s,f),f);o.tooltip.position({left:l+u.left,top:i.mouseY+u.top}).chartContainer(A.parentNode).enabled(v).valueFormatter(function(e,t){return r.tickFormat()(e)}).data({value:g,series:c})(),o.renderGuideLine(l)}),o.dispatch.on("elementMouseout",function(e){k.tooltipHide(),t.clearHighlights()}),k.on("tooltipShow",function(e){v&&_(e,A.parentNode)}),k.on("changeState",function(e){typeof e.disabled!="undefined"&&(b.forEach(function(t,n){t.disabled=e.disabled[n]}),x.disabled=e.disabled),typeof e.index!="undefined"&&(M.i=e.index,M.x=O(M.i),x.index=e.index,tt.data([M])),typeof e.rescaleY!="undefined"&&(y=e.rescaleY),D.update()})}),D}function P(e,n){return n.map(function(n,r){if(!n.values)return n;var i=n.values[e];if(i==null)return n;var s=t.y()(i,e);return s<-0.95&&!A?(n.tempDisabled=!0,n):(n.tempDisabled=!1,n.values=n.values.map(function(e,n){return e.display={y:(t.y()(e,n)-s)/(1+s)},e}),n)})}var t=e.models.line(),n=e.models.axis(),r=e.models.axis(),i=e.models.legend(),s=e.models.legend(),o=e.interactiveGuideline(),u={top:30,right:30,bottom:50,left:60},a=e.utils.defaultColor(),f=null,l=null,c=!0,h=!0,p=!0,d=!1,v=!0,m=!0,g=!1,y=!0,b=function(e,t,n,r,i){return""+e+"
"+""+n+" at "+t+"
"},w,E,S=t.id(),x={index:0,rescaleY:y},T=null,N="No Data Available.",C=function(e){return e.average},k=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState"),L=0,A=!1;n.orient("bottom").tickPadding(7),r.orient(d?"right":"left"),s.updateState(!1);var O=d3.scale.linear(),M={i:0,x:0},_=function(i,s){var o=i.pos[0]+(s.offsetLeft||0),u=i.pos[1]+(s.offsetTop||0),a=n.tickFormat()(t.x()(i.point,i.pointIndex)),f=r.tickFormat()(t.y()(i.point,i.pointIndex)),l=b(i.series.key,a,f,i,D);e.tooltip.show([o,u],l,null,null,s)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+u.left,e.pos[1]+u.top],k.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){k.tooltipHide(e)}),k.on("tooltipHide",function(){v&&e.tooltip.cleanup()}),D.dispatch=k,D.lines=t,D.legend=i,D.xAxis=n,D.yAxis=r,D.interactiveLayer=o,d3.rebind(D,t,"defined","isArea","x","y","xScale","yScale","size","xDomain","yDomain","xRange","yRange","forceX","forceY","interactive","clipEdge","clipVoronoi","useVoronoi","id"),D.options=e.utils.optionsFunc.bind(D),D.margin=function(e){return arguments.length?(u.top=typeof e.top!="undefined"?e.top:u.top,u.right=typeof e.right!="undefined"?e.right:u.right,u.bottom=typeof e.bottom!="undefined"?e.bottom:u.bottom,u.left=typeof e.left!="undefined"?e.left:u.left,D):u},D.width=function(e){return arguments.length?(f=e,D):f},D.height=function(e){return arguments.length?(l=e,D):l},D.color=function(t){return arguments.length?(a=e.utils.getColor(t),i.color(a),D):a},D.rescaleY=function(e){return arguments.length?(y=e,D):y},D.showControls=function(e){return arguments.length?(m=e,D):m},D.useInteractiveGuideline=function(e){return arguments.length?(g=e,e===!0&&(D.interactive(!1),D.useVoronoi(!1)),D):g},D.showLegend=function(e){return arguments.length?(c=e,D):c},D.showXAxis=function(e){return arguments.length?(h=e,D):h},D.showYAxis=function(e){return arguments.length?(p=e,D):p},D.rightAlignYAxis=function(e){return arguments.length?(d=e,r.orient(e?"right":"left"),D):d},D.tooltips=function(e){return arguments.length?(v=e,D):v},D.tooltipContent=function(e){return arguments.length?(b=e,D):b},D.state=function(e){return arguments.length?(x=e,D):x},D.defaultState=function(e){return arguments.length?(T=e,D):T},D.noData=function(e){return arguments.length?(N=e,D):N},D.average=function(e){return arguments.length?(C=e,D):C},D.transitionDuration=function(e){return arguments.length?(L=e,D):L},D.noErrorCheck=function(e){return arguments.length?(A=e,D):A},D},e.models.discreteBar=function(){function E(e){return e.each(function(e){var i=n-t.left-t.right,E=r-t.top-t.bottom,S=d3.select(this);e.forEach(function(e,t){e.values.forEach(function(e){e.series=t})});var T=p&&d?[]:e.map(function(e){return e.values.map(function(e,t){return{x:u(e,t),y:a(e,t),y0:e.y0}})});s.domain(p||d3.merge(T).map(function(e){return e.x})).rangeBands(v||[0,i],.1),o.domain(d||d3.extent(d3.merge(T).map(function(e){return e.y}).concat(f))),c?o.range(m||[E-(o.domain()[0]<0?12:0),o.domain()[1]>0?12:0]):o.range(m||[E,0]),b=b||s,w=w||o.copy().range([o(0),o(0)]);var N=S.selectAll("g.nv-wrap.nv-discretebar").data([e]),C=N.enter().append("g").attr("class","nvd3 nv-wrap nv-discretebar"),k=C.append("g"),L=N.select("g");k.append("g").attr("class","nv-groups"),N.attr("transform","translate("+t.left+","+t.top+")");var A=N.select(".nv-groups").selectAll(".nv-group").data(function(e){return e},function(e){return e.key});A.enter().append("g").style("stroke-opacity",1e-6).style("fill-opacity",1e-6),A.exit().style("stroke-opacity",1e-6).style("fill-opacity",1e-6).remove(),A.attr("class",function(e,t){return"nv-group nv-series-"+t}).classed("hover",function(e){return e.hover}),A.style("stroke-opacity",1).style("fill-opacity",.75);var O=A.selectAll("g.nv-bar").data(function(e){return e.values});O.exit().remove();var M=O.enter().append("g").attr("transform",function(e,t,n){return"translate("+(s(u(e,t))+s.rangeBand()*.05)+", 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h(a(e,t))}).attr("x",s.rangeBand()*.9/2).attr("y",function(e,t){return a(e,t)<0?o(a(e,t))-o(0)+12:-4})):O.selectAll("text").remove(),O.attr("class",function(e,t){return a(e,t)<0?"nv-bar negative":"nv-bar positive"}).style("fill",function(e,t){return e.color||l(e,t)}).style("stroke",function(e,t){return e.color||l(e,t)}).select("rect").attr("class",y).attr("width",s.rangeBand()*.9/e.length),O.attr("transform",function(e,t){var n=s(u(e,t))+s.rangeBand()*.05,r=a(e,t)<0?o(0):o(0)-o(a(e,t))<1?o(0)-1:o(a(e,t));return"translate("+n+", "+r+")"}).select("rect").attr("height",function(e,t){return Math.max(Math.abs(o(a(e,t))-o(d&&d[0]||0))||1)}),b=s.copy(),w=o.copy()}),E}var t={top:0,right:0,bottom:0,left:0},n=960,r=500,i=Math.floor(Math.random()*1e4),s=d3.scale.ordinal(),o=d3.scale.linear(),u=function(e){return e.x},a=function(e){return e.y},f=[0],l=e.utils.defaultColor(),c=!1,h=d3.format(",.2f"),p,d,v,m,g=d3.dispatch("chartClick","elementClick","elementDblClick","elementMouseover","elementMouseout"),y="discreteBar",b,w;return E.dispatch=g,E.options=e.utils.optionsFunc.bind(E),E.x=function(e){return arguments.length?(u=e,E):u},E.y=function(e){return arguments.length?(a=e,E):a},E.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,E):t},E.width=function(e){return arguments.length?(n=e,E):n},E.height=function(e){return arguments.length?(r=e,E):r},E.xScale=function(e){return arguments.length?(s=e,E):s},E.yScale=function(e){return arguments.length?(o=e,E):o},E.xDomain=function(e){return arguments.length?(p=e,E):p},E.yDomain=function(e){return arguments.length?(d=e,E):d},E.xRange=function(e){return 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t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+o.left,e.pos[1]+o.top],S.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){S.tooltipHide(e)}),S.on("tooltipHide",function(){v&&e.tooltip.cleanup()}),C.dispatch=S,C.multibar=t,C.legend=i,C.xAxis=n,C.yAxis=r,d3.rebind(C,t,"x","y","xDomain","yDomain","xRange","yRange","forceX","forceY","clipEdge","id","delay","showValues","showBarLabels","valueFormat","stacked","barColor"),C.options=e.utils.optionsFunc.bind(C),C.margin=function(e){return arguments.length?(o.top=typeof e.top!="undefined"?e.top:o.top,o.right=typeof e.right!="undefined"?e.right:o.right,o.bottom=typeof e.bottom!="undefined"?e.bottom:o.bottom,o.left=typeof e.left!="undefined"?e.left:o.left,C):o},C.width=function(e){return arguments.length?(u=e,C):u},C.height=function(e){return arguments.length?(a=e,C):a},C.color=function(t){return arguments.length?(f=e.utils.getColor(t),i.color(f),C):f},C.showControls=function(e){return 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Charts are saved upon creation.')); - $main.append(Utils.wrap()); - $main.append(Utils.wrap(this.types.$el)); + $main.append(this.types.$el.addClass('ui-top-margin')); // add tab this.tabs.add({ @@ -135,8 +134,8 @@ return Backbone.View.extend({ }); // append tabs - this.portlet.append(this.message.$el); - this.portlet.append(this.tabs.$el); + this.portlet.append(this.message.$el.addClass('ui-top-margin')); + this.portlet.append(this.tabs.$el.addClass('ui-top-margin')); // elements this.setElement(this.portlet.$el); diff --git a/config/plugins/visualizations/charts/static/views/group.js b/config/plugins/visualizations/charts/static/views/group.js index fd7b4f5f71e..d4c67ae0268 100644 --- a/config/plugins/visualizations/charts/static/views/group.js +++ b/config/plugins/visualizations/charts/static/views/group.js @@ -31,10 +31,10 @@ return Backbone.View.extend({ // create element var $view = $(''); - $view.append(Utils.wrap((new Ui.Label({title: 'Provide a label:'})).$el)); - $view.append(Utils.wrap(this.group_key.$el)); - $view.append(Utils.wrap((new Ui.Label({title: 'Select columns:'})).$el)); - $view.append(Utils.wrap(this.table.$el)); + $view.append((new Ui.Label({title: 'Provide a label:'})).$el); + $view.append(this.group_key.$el.addClass('ui-bottom-margin')); + $view.append((new Ui.Label({title: 'Select columns:'})).$el.addClass('ui-top-margin')); + $view.append(this.table.$el.addClass('ui-bottom-margin')); // add element this.setElement($view); diff --git a/config/plugins/visualizations/charts/static/views/types.js b/config/plugins/visualizations/charts/static/views/types.js index 41649ca579f..d0f778d0844 100644 --- a/config/plugins/visualizations/charts/static/views/types.js +++ b/config/plugins/visualizations/charts/static/views/types.js @@ -32,7 +32,7 @@ return Backbone.View.extend({ var $el = $(''); // add label - $el.append(Utils.wrap((new Ui.Label({ title : 'How many data points would you like to analyze?'})).$el)); + $el.append((new Ui.Label({ title : 'How many data points would you like to analyze?'})).$el); // construct chart type subset selection buttons this.library = new Ui.RadioButton.View({ @@ -43,7 +43,7 @@ return Backbone.View.extend({ self._filter(value); } }); - $el.append(Utils.wrap(this.library.$el)); + $el.append(this.library.$el.addClass('ui-bottom-margin')); // set element this.setElement($el); diff --git a/config/plugins/visualizations/charts/static/views/viewport.js b/config/plugins/visualizations/charts/static/views/viewport.js index c5d915c5bb6..b2b5d8d5651 100644 --- a/config/plugins/visualizations/charts/static/views/viewport.js +++ b/config/plugins/visualizations/charts/static/views/viewport.js @@ -28,7 +28,7 @@ return Backbone.View.extend({ this.setElement($(this._template())); // use full screen for viewer - this._fullscreen(this.$el, 90); + this._fullscreen(this.$el, 50); // prevent window scrolling var initial_overflow = $('body').css('overflow'); diff --git a/static/scripts/mvc/tools/tools-form-base.js b/static/scripts/mvc/tools/tools-form-base.js index ccb60e69bd0..e9d7a0d99fc 100644 --- a/static/scripts/mvc/tools/tools-form-base.js +++ b/static/scripts/mvc/tools/tools-form-base.js @@ -306,7 +306,7 @@ define(['utils/utils', 'utils/deferred', 'mvc/ui/ui-portlet', 'mvc/ui/ui-misc', }); // append message - this.portlet.append(this.message.$el, true); + this.portlet.append(this.message.$el); // append tool section this.portlet.append(this.section.$el); diff --git a/static/scripts/mvc/tools/tools-repeat.js b/static/scripts/mvc/tools/tools-repeat.js index ba7e222cacc..0b0cf6d8a94 100644 --- a/static/scripts/mvc/tools/tools-repeat.js +++ b/static/scripts/mvc/tools/tools-repeat.js @@ -44,7 +44,7 @@ var View = Backbone.View.extend({ this.$el.append(this.table.$el); // add button - this.$el.append(Utils.wrap(this.button_new.$el)); + this.$el.append($('').append(this.button_new.$el)); // clear list this.list = {}; diff --git a/static/scripts/mvc/tools/tools-section.js b/static/scripts/mvc/tools/tools-section.js index f112fdab365..2c94b8e6c2b 100644 --- a/static/scripts/mvc/tools/tools-section.js +++ b/static/scripts/mvc/tools/tools-section.js @@ -139,7 +139,7 @@ define(['utils/utils', 'mvc/ui/ui-table', 'mvc/ui/ui-misc', 'mvc/ui/ui-portlet', }); // displays as grouped subsection - sub_section.$el.addClass('ui-table-form-section'); + sub_section.$el.addClass('ui-table-section'); // create table row this.table.add(sub_section.$el); diff --git a/static/scripts/mvc/tools/tools-select-content.js b/static/scripts/mvc/tools/tools-select-content.js index 5f7bf24e9ba..886e4b8e8be 100644 --- a/static/scripts/mvc/tools/tools-select-content.js +++ b/static/scripts/mvc/tools/tools-select-content.js @@ -110,7 +110,7 @@ var View = Backbone.View.extend({ // add elements to dom if (_.size(this.list) > 1) { - this.$el.append(Utils.wrap(this.button_type.$el)); + this.$el.append(this.button_type.$el.addClass('ui-bottom-margin')); } for (var i in this.list) { this.$el.append(this.list[i].field.$el); diff --git a/static/scripts/mvc/ui/ui-portlet.js b/static/scripts/mvc/ui/ui-portlet.js index 683e3094dae..fe2311e93ee 100644 --- a/static/scripts/mvc/ui/ui-portlet.js +++ b/static/scripts/mvc/ui/ui-portlet.js @@ -84,12 +84,8 @@ var View = Backbone.View.extend({ }, // append - append: function($el, unwrapped) { - if (unwrapped) { - this.$content.append($el); - } else { - this.$content.append(Utils.wrap($el)); - } + append: function($el) { + this.$content.append($el); }, // content diff --git a/static/scripts/packed/mvc/tools/tools-form-base.js b/static/scripts/packed/mvc/tools/tools-form-base.js index e980b371a13..4cb6394fe58 100644 --- a/static/scripts/packed/mvc/tools/tools-form-base.js +++ b/static/scripts/packed/mvc/tools/tools-form-base.js @@ -1 +1 @@ -define(["utils/utils","utils/deferred","mvc/ui/ui-portlet","mvc/ui/ui-misc","mvc/citation/citation-model","mvc/citation/citation-view","mvc/tools","mvc/tools/tools-template","mvc/tools/tools-content","mvc/tools/tools-section","mvc/tools/tools-tree"],function(g,h,f,k,i,a,d,c,e,j,b){return Backbone.View.extend({initialize:function(l){this.optionsDefault={is_dynamic:true,narrow:false,initial_errors:false,cls_portlet:"ui-portlet-limited"};this.options=g.merge(l,this.optionsDefault);console.debug(this.options);var m=parent.Galaxy;if(m&&m.modal){this.modal=m.modal}else{this.modal=new k.Modal.View()}if(m&&m.currUser){this.is_admin=m.currUser.get("is_admin")}else{this.is_admin=false}this.container=this.options.container||"body";this.deferred=new h();this.setElement("");$(this.container).append(this.$el);this.build(this.options)},build:function(m){var l=this;this.off("refresh");this.off("reset");this.field_list={};this.input_list={};this.element_list={};this.tree=new b(this);this.content=new e(this);l.options.inputs=m&&m.inputs;this._renderForm(m);this.tree.finalize();if(m.initial_errors){this._errors(m)}this.on("refresh",function(){l.deferred.reset();l.deferred.execute(function(){l._updateModel()})});this.on("reset",function(){for(var n in this.element_list){this.element_list[n].reset()}});this.trigger("refresh")},reciept:function(l){$(this.container).empty();$(this.container).append(l)},highlight:function(m,n,l){var o=this.element_list[m];if(o){o.error(n||"Please verify this parameter.");if(!l){$(this.container).animate({scrollTop:o.$el.offset().top-20},500)}}},_errors:function(n){this.trigger("reset");if(n&&n.errors){var o=this.tree.matchResponse(n.errors);for(var m in this.element_list){var l=this.element_list[m];if(o[m]){this.highlight(m,o[m],true)}}}},_renderForm:function(u){var t=this;this.message=new k.Message();var q=new k.ButtonIcon({icon:"fa-info-circle",title:(!u.narrow&&"Requirements")||null,tooltip:"Display tool requirements",onclick:function(){if(!this.visible){this.visible=true;t.message.update({persistent:true,message:c.requirements(u),status:"info"})}else{this.visible=false;t.message.update({message:""})}}});if(!u.requirements||u.requirements.length==0){q.$el.hide()}var m=new k.ButtonMenu({icon:"fa-cubes",title:(!u.narrow&&"Versions")||null,tooltip:"Select another tool version"});if(u.versions&&u.versions.length>1){for(var o in u.versions){var r=u.versions[o];if(r!=u.version){m.addMenu({title:"Switch to "+r,version:r,icon:"fa-cube",onclick:function(){t.options.id=t.options.id.replace(t.options.version,this.version);t.options.version=this.version;t.deferred.reset();t.deferred.execute(function(){t._buildModel()})}})}}}else{m.$el.hide()}var p=new k.ButtonMenu({icon:"fa-caret-down",title:(!u.narrow&&"Options")||null,tooltip:"View available options"});if(u.biostar_url){p.addMenu({icon:"fa-question-circle",title:"Question?",tooltip:"Ask a question about this tool (Biostar)",onclick:function(){window.open(u.biostar_url+"/p/new/post/")}});p.addMenu({icon:"fa-search",title:"Search",tooltip:"Search help for this tool (Biostar)",onclick:function(){window.open(u.biostar_url+"/t/"+u.id+"/")}})}p.addMenu({icon:"fa-share",title:"Share",tooltip:"Share this tool",onclick:function(){prompt("Copy to clipboard: Ctrl+C, Enter",window.location.origin+galaxy_config.root+"root?tool_id="+u.id)}});if(this.is_admin){p.addMenu({icon:"fa-download",title:"Download",tooltip:"Download this tool",onclick:function(){window.location.href=galaxy_config.root+"api/tools/"+u.id+"/download"}})}this.section=new j.View(t,{inputs:u.inputs});if(this.incompatible){this.$el.hide();$("#tool-form-classic").show();return}this.portlet=new f.View({icon:"fa-wrench",title:""+u.name+" "+u.description+" (Galaxy Tool Version "+u.version+")",cls:this.options.cls_portlet,operations:{requirements:q,menu:p,versions:m},buttons:this.buttons});this.portlet.append(this.message.$el,true);this.portlet.append(this.section.$el);this.$el.empty();this.$el.append(this.portlet.$el);if(u.help!=""){this.$el.append(c.help(u.help))}if(u.citations){var s=$("");var l=new i.ToolCitationCollection();l.tool_id=u.id;var n=new a.CitationListView({el:s,collection:l});n.render();l.fetch();this.$el.append(s)}if(u.message){this.message.update({persistent:true,status:"warning",message:u.message})}}})}); \ No newline at end of file +define(["utils/utils","utils/deferred","mvc/ui/ui-portlet","mvc/ui/ui-misc","mvc/citation/citation-model","mvc/citation/citation-view","mvc/tools","mvc/tools/tools-template","mvc/tools/tools-content","mvc/tools/tools-section","mvc/tools/tools-tree"],function(g,h,f,k,i,a,d,c,e,j,b){return Backbone.View.extend({initialize:function(l){this.optionsDefault={is_dynamic:true,narrow:false,initial_errors:false,cls_portlet:"ui-portlet-limited"};this.options=g.merge(l,this.optionsDefault);console.debug(this.options);var m=parent.Galaxy;if(m&&m.modal){this.modal=m.modal}else{this.modal=new k.Modal.View()}if(m&&m.currUser){this.is_admin=m.currUser.get("is_admin")}else{this.is_admin=false}this.container=this.options.container||"body";this.deferred=new h();this.setElement("");$(this.container).append(this.$el);this.build(this.options)},build:function(m){var l=this;this.off("refresh");this.off("reset");this.field_list={};this.input_list={};this.element_list={};this.tree=new b(this);this.content=new e(this);l.options.inputs=m&&m.inputs;this._renderForm(m);this.tree.finalize();if(m.initial_errors){this._errors(m)}this.on("refresh",function(){l.deferred.reset();l.deferred.execute(function(){l._updateModel()})});this.on("reset",function(){for(var n in this.element_list){this.element_list[n].reset()}});this.trigger("refresh")},reciept:function(l){$(this.container).empty();$(this.container).append(l)},highlight:function(m,n,l){var o=this.element_list[m];if(o){o.error(n||"Please verify this parameter.");if(!l){$(this.container).animate({scrollTop:o.$el.offset().top-20},500)}}},_errors:function(n){this.trigger("reset");if(n&&n.errors){var o=this.tree.matchResponse(n.errors);for(var m in this.element_list){var l=this.element_list[m];if(o[m]){this.highlight(m,o[m],true)}}}},_renderForm:function(u){var t=this;this.message=new k.Message();var q=new k.ButtonIcon({icon:"fa-info-circle",title:(!u.narrow&&"Requirements")||null,tooltip:"Display tool requirements",onclick:function(){if(!this.visible){this.visible=true;t.message.update({persistent:true,message:c.requirements(u),status:"info"})}else{this.visible=false;t.message.update({message:""})}}});if(!u.requirements||u.requirements.length==0){q.$el.hide()}var m=new k.ButtonMenu({icon:"fa-cubes",title:(!u.narrow&&"Versions")||null,tooltip:"Select another tool version"});if(u.versions&&u.versions.length>1){for(var o in u.versions){var r=u.versions[o];if(r!=u.version){m.addMenu({title:"Switch to "+r,version:r,icon:"fa-cube",onclick:function(){t.options.id=t.options.id.replace(t.options.version,this.version);t.options.version=this.version;t.deferred.reset();t.deferred.execute(function(){t._buildModel()})}})}}}else{m.$el.hide()}var p=new k.ButtonMenu({icon:"fa-caret-down",title:(!u.narrow&&"Options")||null,tooltip:"View available options"});if(u.biostar_url){p.addMenu({icon:"fa-question-circle",title:"Question?",tooltip:"Ask a question about this tool (Biostar)",onclick:function(){window.open(u.biostar_url+"/p/new/post/")}});p.addMenu({icon:"fa-search",title:"Search",tooltip:"Search help for this tool (Biostar)",onclick:function(){window.open(u.biostar_url+"/t/"+u.id+"/")}})}p.addMenu({icon:"fa-share",title:"Share",tooltip:"Share this tool",onclick:function(){prompt("Copy to clipboard: Ctrl+C, Enter",window.location.origin+galaxy_config.root+"root?tool_id="+u.id)}});if(this.is_admin){p.addMenu({icon:"fa-download",title:"Download",tooltip:"Download this tool",onclick:function(){window.location.href=galaxy_config.root+"api/tools/"+u.id+"/download"}})}this.section=new j.View(t,{inputs:u.inputs});if(this.incompatible){this.$el.hide();$("#tool-form-classic").show();return}this.portlet=new f.View({icon:"fa-wrench",title:""+u.name+" "+u.description+" (Galaxy Tool Version "+u.version+")",cls:this.options.cls_portlet,operations:{requirements:q,menu:p,versions:m},buttons:this.buttons});this.portlet.append(this.message.$el);this.portlet.append(this.section.$el);this.$el.empty();this.$el.append(this.portlet.$el);if(u.help!=""){this.$el.append(c.help(u.help))}if(u.citations){var s=$("");var l=new i.ToolCitationCollection();l.tool_id=u.id;var n=new a.CitationListView({el:s,collection:l});n.render();l.fetch();this.$el.append(s)}if(u.message){this.message.update({persistent:true,status:"warning",message:u.message})}}})}); \ No newline at end of file diff --git a/static/scripts/packed/mvc/tools/tools-repeat.js b/static/scripts/packed/mvc/tools/tools-repeat.js index d7915f626f2..f56bae451d2 100644 --- a/static/scripts/packed/mvc/tools/tools-repeat.js +++ b/static/scripts/packed/mvc/tools/tools-repeat.js @@ -1 +1 @@ -define(["utils/utils","mvc/ui/ui-table","mvc/ui/ui-portlet","mvc/ui/ui-misc"],function(c,a,b,e){var d=Backbone.View.extend({optionsDefault:{max:null},initialize:function(g){this.options=c.merge(g,this.optionsDefault);this.setElement("");var f=this;this.button_new=new e.ButtonIcon({icon:"fa-plus",title:"Insert "+g.title_new,tooltip:"Add new "+g.title_new+" block",floating:"clear",onclick:function(){if(g.onnew){g.onnew()}}});this.table=new a.View({cls:"ui-table-plain",content:""});this.$el.append(this.table.$el);this.$el.append(c.wrap(this.button_new.$el));this.list={}},size:function(){return _.size(this.list)},add:function(g){var f=new e.ButtonIcon({icon:"fa-trash-o",tooltip:"Delete this repeat block",cls:"ui-button-icon-plain",onclick:function(){if(g.ondel){g.ondel()}}});var h=new b.View({id:g.id,title:""+g.title+"",cls:"ui-portlet-repeat",operations:{button_delete:f}});if(!g.ondel){f.remove()}h.append(g.$el);h.$el.addClass("section-row");this.list[g.id]=h;this.table.add(h.$el);this.table.append("row_"+g.id,true);if(this.options.max>0&&this.size()>=this.options.max){this.button_new.disable()}},del:function(g){if(this.list[g]){var f=this.table.get("row_"+g);f.remove();delete this.list[g];this.button_new.enable()}},retitle:function(g){var f=0;for(var h in this.list){this.list[h].title(++f+": "+g)}}});return{View:d}}); \ No newline at end of file +define(["utils/utils","mvc/ui/ui-table","mvc/ui/ui-portlet","mvc/ui/ui-misc"],function(c,a,b,e){var d=Backbone.View.extend({optionsDefault:{max:null},initialize:function(g){this.options=c.merge(g,this.optionsDefault);this.setElement("");var f=this;this.button_new=new e.ButtonIcon({icon:"fa-plus",title:"Insert "+g.title_new,tooltip:"Add new "+g.title_new+" block",floating:"clear",onclick:function(){if(g.onnew){g.onnew()}}});this.table=new a.View({cls:"ui-table-plain",content:""});this.$el.append(this.table.$el);this.$el.append($("").append(this.button_new.$el));this.list={}},size:function(){return _.size(this.list)},add:function(g){var f=new e.ButtonIcon({icon:"fa-trash-o",tooltip:"Delete this repeat block",cls:"ui-button-icon-plain",onclick:function(){if(g.ondel){g.ondel()}}});var h=new b.View({id:g.id,title:""+g.title+"",cls:"ui-portlet-repeat",operations:{button_delete:f}});if(!g.ondel){f.remove()}h.append(g.$el);h.$el.addClass("section-row");this.list[g.id]=h;this.table.add(h.$el);this.table.append("row_"+g.id,true);if(this.options.max>0&&this.size()>=this.options.max){this.button_new.disable()}},del:function(g){if(this.list[g]){var f=this.table.get("row_"+g);f.remove();delete this.list[g];this.button_new.enable()}},retitle:function(g){var f=0;for(var h in this.list){this.list[h].title(++f+": "+g)}}});return{View:d}}); \ No newline at end of file diff --git a/static/scripts/packed/mvc/tools/tools-section.js b/static/scripts/packed/mvc/tools/tools-section.js index 38abeee52c1..b1847a18152 100644 --- a/static/scripts/packed/mvc/tools/tools-section.js +++ b/static/scripts/packed/mvc/tools/tools-section.js @@ -1 +1 @@ -define(["utils/utils","mvc/ui/ui-table","mvc/ui/ui-misc","mvc/ui/ui-portlet","mvc/tools/tools-repeat","mvc/tools/tools-select-content","mvc/tools/tools-input"],function(e,b,h,d,c,a,f){var g=Backbone.View.extend({initialize:function(j,i){this.app=j;this.inputs=i.inputs;i.cls="ui-table-plain";i.cls_tr="section-row";this.table=new b.View(i);this.setElement(this.table.$el);this.render()},render:function(){this.table.delAll();for(var j in this.inputs){this.add(this.inputs[j])}},add:function(k){var j=this;var i=jQuery.extend(true,{},k);i.id=k.id=e.uuid();this.app.input_list[i.id]=i;var l=i.type;switch(l){case"conditional":this._addConditional(i);break;case"repeat":this._addRepeat(i);break;case"section":this._addSection(i);break;default:this._addRow(i)}},_addConditional:function(j){var k=this;j.test_param.id=j.id;var n=this._addRow(j.test_param);n.options.onchange=function(w){var v=k.app.tree.matchCase(j,w);for(var u in j.cases){var q=j.cases[u];var t=j.id+"-section-"+u;var p=k.table.get(t);var s=false;for(var r in q.inputs){if(!q.inputs[r].hidden){s=true;break}}if(u==v&&s){p.fadeIn("fast")}else{p.hide()}}k.app.trigger("refresh")};for(var m in j.cases){var l=j.id+"-section-"+m;var o=new g(this.app,{inputs:j.cases[m].inputs});o.$el.addClass("ui-table-form-section");this.table.add(o.$el);this.table.append(l)}n.trigger("change")},_addRepeat:function(p){var s=this;var q=0;function n(i,u){var t=p.id+"-section-"+(q++);var v=null;if(u){v=function(){l.del(t);l.retitle(p.title);s.app.trigger("refresh")}}var w=new g(s.app,{inputs:i});l.add({id:t,title:p.title,$el:w.$el,ondel:v});l.retitle(p.title)}var l=new c.View({title_new:p.title,max:p.max,onnew:function(){n(p.inputs,true);s.app.trigger("refresh")}});var j=p.min;var r=_.size(p.cache);for(var m=0;m';if(d.title){c+='"}c+='
";return c}});return{View:b}});
\ No newline at end of file
+define(["utils/utils"],function(a){var b=Backbone.View.extend({visible:false,optionsDefault:{title:"",icon:"",buttons:null,body:null,scrollable:true,nopadding:false,operations:null,placement:"bottom",cls:"ui-portlet",operations_flt:"right"},$title:null,$content:null,$buttons:null,$operations:null,$header:null,initialize:function(e){this.options=a.merge(e,this.optionsDefault);this.setElement(this._template(this.options));this.$content=this.$el.find(".content");this.$title=this.$el.find(".portlet-title-text");this.$header=this.$el.find(".portlet-header");var d=this.$el.find(".portlet-content");if(this.options.nopadding){d.css("padding","0px");this.$content.css("padding","0px")}this.$buttons=$(this.el).find(".buttons");if(this.options.buttons){var c=this;$.each(this.options.buttons,function(f,g){g.$el.prop("id",f);c.$buttons.append(g.$el)})}else{this.$buttons.remove()}this.$operations=$(this.el).find(".portlet-operations");if(this.options.operations){var c=this;$.each(this.options.operations,function(f,g){g.$el.prop("id",f);c.$operations.append(g.$el)})}if(this.options.body){this.append(this.options.body)}},append:function(c){this.$content.append(c)},content:function(){return this.$content},show:function(){this.$el.fadeIn("fast");this.visible=true},hide:function(){this.$el.fadeOut("fast");this.visible=false},enableButton:function(c){this.$buttons.find("#"+c).prop("disabled",false)},disableButton:function(c){this.$buttons.find("#"+c).prop("disabled",true)},hideOperation:function(c){this.$operations.find("#"+c).hide()},showOperation:function(c){this.$operations.find("#"+c).show()},setOperation:function(e,d){var c=this.$operations.find("#"+e);c.off("click");c.on("click",d)},title:function(d){var c=this.$title;if(d){c.html(d)}return c.html()},_template:function(d){var c='';if(d.icon){c+=' '}c+=''+d.title+"
';if(d.placement=="top"){c+=''}c+='';if(d.placement=="bottom"){c+=''}c+="
';if(d.title){c+='"}c+='
";return c}});return{View:b}});
\ No newline at end of file
diff --git a/static/scripts/packed/utils/utils.js b/static/scripts/packed/utils/utils.js
index a72bf5f00d3..7a341fd6d1c 100644
--- a/static/scripts/packed/utils/utils.js
+++ b/static/scripts/packed/utils/utils.js
@@ -1 +1 @@
-define(["libs/underscore"],function(m){function n(r,q){for(var o in r){var p=r[o];if(p&&typeof(p)=="object"){q(p);n(p,q)}}}function d(o){return $("").text(o).html()}function l(p){if(!(p instanceof Array)){p=[p]}for(var o in p){if(["__null__","__undefined__","None",null,undefined].indexOf(p[o])>-1){return false}}return true}function h(o){var o=o.toString();if(o){o=o.replace(/,/g,", ");var p=o.lastIndexOf(", ");if(p!=-1){o=o.substr(0,p)+" or "+o.substr(p+1)}return o}return""}function e(o){top.__utils__get__=top.__utils__get__||{};if(o.cache&&top.__utils__get__[o.url]){o.success&&o.success(top.__utils__get__[o.url]);console.debug("utils.js::get() - Fetching from cache ["+o.url+"].")}else{i({url:o.url,data:o.data,success:function(p){top.__utils__get__[o.url]=p;o.success&&o.success(p)},error:function(p){o.error&&o.error(p)}})}}function i(p){var o={contentType:"application/json",type:p.type||"GET",data:p.data||{},url:p.url};if(o.type=="GET"||o.type=="DELETE"){if(o.url.indexOf("?")==-1){o.url+="?"}else{o.url+="&"}o.url=o.url+$.param(o.data,true);o.data=null}else{o.dataType="json";o.url=o.url;o.data=JSON.stringify(o.data)}$.ajax(o).done(function(q){if(typeof q==="string"){try{q=q.replace("Infinity,",'"Infinity",');q=jQuery.parseJSON(q)}catch(r){console.debug(r)}}p.success&&p.success(q)}).fail(function(r){var q=null;try{q=jQuery.parseJSON(r.responseText)}catch(s){q=r.responseText}p.error&&p.error(q,r)})}function j(r,o){var p=$('');p.appendTo(":eq(0)");var q=p.css(o);p.remove();return q}function g(o){if(!$('link[href^="'+o+'"]').length){$('').appendTo("head")}}function k(o,p){if(o){return m.defaults(o,p)}else{return p}}function b(p,r){var q="";if(p>=100000000000){p=p/100000000000;q="TB"}else{if(p>=100000000){p=p/100000000;q="GB"}else{if(p>=100000){p=p/100000;q="MB"}else{if(p>=100){p=p/100;q="KB"}else{if(p>0){p=p*10;q="b"}else{return"-"}}}}}var o=(Math.round(p)/10);if(r){return o+" "+q}else{return""+o+" "+q}}function a(){return"x"+Math.random().toString(36).substring(2,9)}function c(o){var p=$("");p.append(o);return p}function f(){var q=new Date();var o=(q.getHours()<10?"0":"")+q.getHours();var p=(q.getMinutes()<10?"0":"")+q.getMinutes();var r=q.getDate()+"/"+(q.getMonth()+1)+"/"+q.getFullYear()+", "+o+":"+p;return r}return{cssLoadFile:g,cssGetAttribute:j,get:e,merge:k,bytesToString:b,uuid:a,time:f,wrap:c,request:i,sanitize:d,textify:h,validate:l,deepeach:n}});
\ No newline at end of file
+define(["libs/underscore"],function(l){function m(q,p){for(var n in q){var o=q[n];if(o&&typeof(o)=="object"){p(o);m(o,p)}}}function c(n){return $("").text(n).html()}function k(o){if(!(o instanceof Array)){o=[o]}for(var n in o){if(["__null__","__undefined__","None",null,undefined].indexOf(o[n])>-1){return false}}return true}function g(n){var n=n.toString();if(n){n=n.replace(/,/g,", ");var o=n.lastIndexOf(", ");if(o!=-1){n=n.substr(0,o)+" or "+n.substr(o+1)}return n}return""}function d(n){top.__utils__get__=top.__utils__get__||{};if(n.cache&&top.__utils__get__[n.url]){n.success&&n.success(top.__utils__get__[n.url]);console.debug("utils.js::get() - Fetching from cache ["+n.url+"].")}else{h({url:n.url,data:n.data,success:function(o){top.__utils__get__[n.url]=o;n.success&&n.success(o)},error:function(o){n.error&&n.error(o)}})}}function h(o){var n={contentType:"application/json",type:o.type||"GET",data:o.data||{},url:o.url};if(n.type=="GET"||n.type=="DELETE"){if(n.url.indexOf("?")==-1){n.url+="?"}else{n.url+="&"}n.url=n.url+$.param(n.data,true);n.data=null}else{n.dataType="json";n.url=n.url;n.data=JSON.stringify(n.data)}$.ajax(n).done(function(p){if(typeof p==="string"){try{p=p.replace("Infinity,",'"Infinity",');p=jQuery.parseJSON(p)}catch(q){console.debug(q)}}o.success&&o.success(p)}).fail(function(q){var p=null;try{p=jQuery.parseJSON(q.responseText)}catch(r){p=q.responseText}o.error&&o.error(p,q)})}function i(q,n){var o=$('');o.appendTo(":eq(0)");var p=o.css(n);o.remove();return p}function f(n){if(!$('link[href^="'+n+'"]').length){$('').appendTo("head")}}function j(n,o){if(n){return l.defaults(n,o)}else{return o}}function b(o,q){var p="";if(o>=100000000000){o=o/100000000000;p="TB"}else{if(o>=100000000){o=o/100000000;p="GB"}else{if(o>=100000){o=o/100000;p="MB"}else{if(o>=100){o=o/100;p="KB"}else{if(o>0){o=o*10;p="b"}else{return"-"}}}}}var n=(Math.round(o)/10);if(q){return n+" "+p}else{return""+n+" "+p}}function a(){return"x"+Math.random().toString(36).substring(2,9)}function e(){var p=new Date();var n=(p.getHours()<10?"0":"")+p.getHours();var o=(p.getMinutes()<10?"0":"")+p.getMinutes();var q=p.getDate()+"/"+(p.getMonth()+1)+"/"+p.getFullYear()+", "+n+":"+o;return q}return{cssLoadFile:f,cssGetAttribute:i,get:d,merge:j,bytesToString:b,uuid:a,time:e,request:h,sanitize:c,textify:g,validate:k,deepeach:m}});
\ No newline at end of file
diff --git a/static/scripts/utils/utils.js b/static/scripts/utils/utils.js
index 1a67406a146..217f376831b 100644
--- a/static/scripts/utils/utils.js
+++ b/static/scripts/utils/utils.js
@@ -218,16 +218,6 @@ function uuid(){
return 'x' + Math.random().toString(36).substring(2, 9);
};
-/**
- * Wrap an dom element into a paragraph
- * @param{Element} $el - DOM element to be wrapped
- */
-function wrap($el) {
- var wrapper = $('');
- wrapper.append($el);
- return wrapper;
-};
-
/**
* Create a time stamp
*/
@@ -256,7 +246,6 @@ return {
bytesToString: bytesToString,
uuid: uuid,
time: time,
- wrap: wrap,
request: request,
sanitize: sanitize,
textify: textify,
diff --git a/static/style/blue/base.css b/static/style/blue/base.css
index a4fabdea973..bb465a62715 100644
--- a/static/style/blue/base.css
+++ b/static/style/blue/base.css
@@ -1396,18 +1396,11 @@ label{font-weight:normal}
.upload-header .select2-choice{max-height:20px;line-height:18px;background:transparent;text-align:center;font-weight:normal}.upload-header .select2-choice .select2-arrow b{background-position:0 -3px}
.upload-top{height:5%;text-align:center}.upload-top .upload-info{margin-top:0px;font-weight:normal;text-align:center}
.no-highlight,.ui-button-icon,.ui-portlet,.ui-portlet-repeat,.ui-portlet-limited,.ui-portlet-section,.ui-portlet-narrow{-webkit-user-select:none;-moz-user-select:none;-khtml-user-select:none;-ms-user-select:none;}
+.ui-top-margin,.ui-both-margin{padding-top:5px !important}
+.ui-bottom-margin,.ui-both-margin{margin-bottom:5px !important}
.ui-error{-moz-border-radius:3px;border-radius:3px;background:#f9c7c5;padding:5px}
-.ui-table-form-error{display:none}.ui-table-form-error .ui-table-form-error-text{padding-left:5px}
-.ui-table tbody,.ui-table-plain tbody{cursor:pointer}
-.ui-table .ui-table-form-section,.ui-table-plain .ui-table-form-section{border-left:solid 3px #ebd9b2;border-radius:5px !important;padding-left:10px}
-.ui-table-plain{table-layout:fixed}.ui-table-plain tbody{cursor:auto !important}.ui-table-plain tbody td{padding:5px 0px 5px 0px !important;border:none !important}
-.ui-table-form-element .ui-table-form-title-optional{font-weight:bold;text-decoration:underline;cursor:pointer}
-.ui-table-form-element .ui-table-form-field{margin-top:5px}
-.ui-table-form-title-strong{font-weight:bold}
-.ui-table-form-info{clear:both !important}
-.ui-table-form-separator{font-weight:bold;font-size:0.9em}
.ui-label{font-weight:bold}
-.ui-message{padding:2px 10px 2px 10px;margin-bottom:5px}
+.ui-message{padding:2px 10px 2px 10px;margin:0px}
.ui-icon{font-size:1.2em}
.ui-button-icon{height:auto !important}.ui-button-icon ul i{font-size:1.2em;margin-right:5px;position:relative;top:1px}
.ui-button-icon .button{margin-right:5px;margin-left:5px}.ui-button-icon .button .title{position:relative;font-size:0.8em;font-weight:normal;top:-1px}
@@ -1417,19 +1410,27 @@ label{font-weight:normal}
.ui-button-icon-plain{border:none !important;background:none !important;height:inherit !important;width:inherit !important;padding-right:3px !important}
.ui-tabs .ui-tabs-add{font-size:0.8em;margin-right:5px}
.ui-tabs .ui-tabs-delete{font-size:0.8em;margin-left:5px;cursor:pointer}
+.ui-table tbody,.ui-table-plain tbody{cursor:pointer}
+.ui-table-plain{table-layout:fixed}.ui-table-plain tbody{cursor:auto !important}.ui-table-plain tbody td{padding:0px !important;border:none !important}
+.ui-table-plain .ui-table-section{border-left:solid 3px #ebd9b2;border-radius:5px !important;margin-bottom:5px;padding-left:10px}
+.ui-table-form-element{margin-top:5px;margin-bottom:5px}.ui-table-form-element .ui-table-form-title-optional{font-weight:bold;text-decoration:underline;cursor:pointer}
+.ui-table-form-element .ui-table-form-field{margin-top:5px}
+.ui-table-form-title-strong{font-weight:bold}
+.ui-table-form-info{clear:both !important}
+.ui-table-form-separator{font-weight:bold;font-size:0.9em}
+.ui-table-form-error{display:none}.ui-table-form-error .ui-table-form-error-text{padding-left:5px}
.ui-portlet,.ui-portlet-repeat,.ui-portlet-limited,.ui-portlet-section,.ui-portlet-narrow,.ui-portlet-repeat,.ui-portlet-limited,.ui-portlet-section,.ui-portlet-narrow{border:solid #d6b161 1px;border-radius:3px;position:relative;clear:both;width:auto;height:100%}.ui-portlet .portlet-header,.ui-portlet-limited .portlet-header,.ui-portlet-narrow .portlet-header{background:#ebd9b2;border-bottom:solid #d6b161 1px;padding:2px 8px;overflow:visible;float:right;width:100%}.ui-portlet .portlet-header .portlet-title,.ui-portlet-limited .portlet-header .portlet-title,.ui-portlet-narrow .portlet-header .portlet-title{display:inline;vertical-align:middle}.ui-portlet .portlet-header .portlet-title .portlet-title-text,.ui-portlet-limited .portlet-header .portlet-title .portlet-title-text,.ui-portlet-narrow .portlet-header .portlet-title .portlet-title-text{vertical-align:middle;line-height:22px}
.ui-portlet .portlet-header .portlet-title .icon,.ui-portlet-limited .portlet-header .portlet-title .icon,.ui-portlet-narrow .portlet-header .portlet-title .icon{font-size:1.2em;vertical-align:middle}
.ui-portlet .portlet-header .portlet-operations .ui-button-icon,.ui-portlet-limited .portlet-header .portlet-operations .ui-button-icon,.ui-portlet-narrow .portlet-header .portlet-operations .ui-button-icon{margin-left:5px}
-.ui-portlet .portlet-buttons,.ui-portlet-limited .portlet-buttons,.ui-portlet-narrow .portlet-buttons{height:50px;padding:10px}
-.ui-portlet .portlet-content,.ui-portlet-limited .portlet-content,.ui-portlet-narrow .portlet-content{height:inherit;padding:10px;clear:both}.ui-portlet .portlet-content .content,.ui-portlet-limited .portlet-content .content,.ui-portlet-narrow .portlet-content .content{padding:0px;height:100%;width:100%}.ui-portlet .portlet-content .content .buttons,.ui-portlet-limited .portlet-content .content .buttons,.ui-portlet-narrow .portlet-content .content .buttons{height:50px;padding:10px}
-.ui-portlet-repeat,.ui-portlet-section,.ui-portlet-section{border:none;border-left:solid 3px #ebd9b2;border-radius:5px}.ui-portlet-repeat .portlet-header,.ui-portlet-section .portlet-header{background:#ebd9b2;border-radius:5px;border-bottom-left-radius:0px;border-top-left-radius:0px;padding:0px 2px}.ui-portlet-repeat .portlet-header .portlet-title-text,.ui-portlet-section .portlet-header .portlet-title-text{vertical-align:middle;line-height:20px !important}
-.ui-portlet-repeat .portlet-content,.ui-portlet-section .portlet-content{padding-left:10px}
+.ui-portlet .portlet-content,.ui-portlet-limited .portlet-content,.ui-portlet-narrow .portlet-content{height:inherit;padding-left:10px;padding-right:10px;clear:both}.ui-portlet .portlet-content .content,.ui-portlet-limited .portlet-content .content,.ui-portlet-narrow .portlet-content .content{padding:0px;height:100%;width:100%}
+.ui-portlet .portlet-content .buttons,.ui-portlet-limited .portlet-content .buttons,.ui-portlet-narrow .portlet-content .buttons{margin-top:5px;margin-bottom:5px}
+.ui-portlet-repeat,.ui-portlet-section,.ui-portlet-section{border:none;border-left:solid 3px #ebd9b2;border-radius:5px;margin-bottom:5px}.ui-portlet-repeat .portlet-header,.ui-portlet-section .portlet-header{background:#ebd9b2;border-radius:5px;border-bottom-left-radius:0px;border-top-left-radius:0px;padding:0px 2px}.ui-portlet-repeat .portlet-header .portlet-title-text,.ui-portlet-section .portlet-header .portlet-title-text{vertical-align:middle;line-height:20px !important}
+.ui-portlet-repeat .portlet-content,.ui-portlet-section .portlet-content{padding-right:0px}
.ui-portlet-section{border-left:solid 3px #dfe5f9}.ui-portlet-section .portlet-header{background:#dfe5f9;border-bottom:solid #b4c2f1 1px}
-.ui-portlet-narrow{border:none}.ui-portlet-narrow .portlet-header{border-radius:3px;margin-bottom:5px}.ui-portlet-narrow .portlet-header .portlet-operations .ui-button-icon{margin-left:3px}
+.ui-portlet-narrow{border:none}.ui-portlet-narrow .portlet-header{border-radius:3px}.ui-portlet-narrow .portlet-header .portlet-operations .ui-button-icon{margin-left:3px}
+.ui-portlet-narrow .ui-portlet-repeat .portlet-header,.ui-portlet-narrow .ui-portlet-section .portlet-header{border-radius:5px;border-bottom-left-radius:0px;border-top-left-radius:0px}
.ui-portlet-narrow .portlet-content{padding:0px}
-.ui-portlet-narrow .ui-table-form-section{padding-left:5px}
-.ui-portlet-narrow .ui-portlet-repeat .portlet-header,.ui-portlet-narrow .ui-portlet-section .portlet-header{border-radius:5px;border-bottom-left-radius:0px;border-top-left-radius:0px;margin-bottom:0px}
-.ui-portlet-narrow .ui-portlet-repeat .portlet-content,.ui-portlet-narrow .ui-portlet-section .portlet-content{padding:0px;padding-left:5px}
+.ui-portlet-narrow .ui-table-section,.ui-portlet-narrow .ui-portlet-repeat .portlet-content,.ui-portlet-narrow .ui-portlet-section .portlet-content{padding-left:5px}
.ui-portlet-limited,.ui-portlet-narrow,.ui-portlet-narrow{max-width:900px}
.ui-popover{max-width:700px;display:none}.ui-popover .popover-close{position:absolute;right:10px;top:7px;font-size:1.2em;cursor:pointer}
.ui-popover .popover-title{padding:4px 10px}
diff --git a/static/style/src/less/ui.less b/static/style/src/less/ui.less
index 6a20595379e..a3dda5a1ec7 100644
--- a/static/style/src/less/ui.less
+++ b/static/style/src/less/ui.less
@@ -1,3 +1,4 @@
+// prevents highlighting i.e. text selection on double click
.no-highlight {
-webkit-user-select: none; /* webkit (safari, chrome) browsers */
-moz-user-select: none; /* mozilla browsers */
@@ -5,73 +6,30 @@
-ms-user-select: none; /* IE10+ */
}
+// default margins
+@ui-margin-vertical: 5px;
+@ui-margin-horizontal: 5px;
+
+// margins
+.ui-top-margin {
+ padding-top: @ui-margin-vertical !important;
+}
+
+.ui-bottom-margin {
+ margin-bottom: @ui-margin-vertical !important;
+}
+
+.ui-both-margin {
+ &:extend(.ui-top-margin);
+ &:extend(.ui-bottom-margin);
+}
+
+// non-interactive elements
.ui-error {
-moz-border-radius: @border-radius-base;
border-radius: @border-radius-base;
background: @state-danger-bg;
- padding: 5px;
-}
-
-.ui-table-form-error {
- display: none;
- .ui-table-form-error-text {
- padding-left: 5px;
- }
-}
-
-.ui-table {
- &:extend(.grid);
-
- tbody {
- cursor: pointer;
- td {
- &:extend(.grid tbody td);
- }
- }
-
- .ui-table-form-section {
- border-left: solid 3px @form-heading-bg;
- border-radius: @border-radius-large !important;
- padding-left: 10px;
- }
-}
-
-.ui-table-plain {
- &:extend(.ui-table all);
- table-layout:fixed;
-
- tbody {
- cursor: auto !important;
- td {
- padding: 5px 0px 5px 0px !important;
- border: none !important;
- }
- }
-}
-
-.ui-table-form-element {
- .ui-table-form-title-optional {
- font-weight: bold;
- text-decoration: underline;
- cursor: pointer;
- }
- .ui-table-form-field {
- margin-top: 5px;
- }
-}
-
-.ui-table-form-title-strong {
- font-weight: bold;
-}
-
-.ui-table-form-info {
- &:extend(.toolParamHelp);
- clear: both !important;
-}
-
-.ui-table-form-separator {
- font-weight: bold;
- font-size: 0.9em;
+ padding: @ui-margin-vertical;
}
.ui-label {
@@ -80,25 +38,26 @@
.ui-message {
padding: 2px 10px 2px 10px;
- margin-bottom: 5px;
+ margin: 0px;
}
.ui-icon {
font-size: 1.2em;
}
+// buttons
.ui-button-icon {
&:extend(.icon-btn);
&:extend(.no-highlight);
height: auto !important;
ul {
i {
- font-size: 1.2em; margin-right: 5px; position: relative; top: 1px;
+ font-size: 1.2em; margin-right: @ui-margin-horizontal; position: relative; top: 1px;
}
}
.button {
- margin-right: 5px;
- margin-left: 5px;
+ margin-right: @ui-margin-horizontal;
+ margin-left: @ui-margin-horizontal;
.title {
position: relative;
@@ -130,19 +89,88 @@
padding-right: 3px !important;
}
+// tabs
.ui-tabs {
.ui-tabs-add {
font-size : 0.8em;
- margin-right : 5px;
+ margin-right : @ui-margin-horizontal;
}
.ui-tabs-delete {
font-size : 0.8em;
- margin-left : 5px;
+ margin-left : @ui-margin-horizontal;
cursor : pointer;
}
}
+// tables
+.ui-table {
+ &:extend(.grid);
+
+ tbody {
+ cursor: pointer;
+ td {
+ &:extend(.grid tbody td);
+ }
+ }
+}
+
+.ui-table-plain {
+ &:extend(.ui-table all);
+ table-layout:fixed;
+
+ tbody {
+ cursor: auto !important;
+ td {
+ padding: 0px !important;
+ border: none !important;
+ }
+ }
+
+ .ui-table-section {
+ border-left: solid 3px @form-heading-bg;
+ border-radius: @border-radius-large !important;
+ margin-bottom: @ui-margin-vertical;
+ padding-left: 10px;
+ }
+}
+
+// table form elements
+.ui-table-form-element {
+ .ui-table-form-title-optional {
+ font-weight: bold;
+ text-decoration: underline;
+ cursor: pointer;
+ }
+ .ui-table-form-field {
+ margin-top: @ui-margin-vertical;
+ }
+ margin-top: @ui-margin-vertical;
+ margin-bottom: @ui-margin-vertical;
+}
+
+.ui-table-form-title-strong {
+ font-weight: bold;
+}
+
+.ui-table-form-info {
+ &:extend(.toolParamHelp);
+ clear: both !important;
+}
+
+.ui-table-form-separator {
+ font-weight: bold;
+ font-size: 0.9em;
+}
+
+.ui-table-form-error {
+ display: none;
+ .ui-table-form-error-text {
+ padding-left: @ui-margin-horizontal;
+ }
+}
+
+// portlets
.ui-portlet {
&:extend(.no-highlight);
border: solid @form-border 1px;
@@ -174,30 +202,24 @@
}
.portlet-operations {
.ui-button-icon {
- margin-left: 5px;
+ margin-left: @ui-margin-horizontal;
}
}
}
- .portlet-buttons {
- height: 50px;
- padding: 10px;
- }
-
.portlet-content {
height: inherit;
- padding: 10px;
+ padding-left: 10px;
+ padding-right: 10px;
clear: both;
-
.content {
padding : 0px;
height : 100%;
width : 100%;
-
- .buttons {
- height: 50px;
- padding: 10px;
- }
+ }
+ .buttons {
+ margin-top: @ui-margin-vertical;
+ margin-bottom: @ui-margin-vertical;
}
}
}
@@ -207,6 +229,7 @@
border: none;
border-left: solid 3px @form-heading-bg;
border-radius: @border-radius-large;
+ margin-bottom: @ui-margin-vertical;
.portlet-header {
background: @form-heading-bg;
border-radius: @border-radius-large;
@@ -218,9 +241,8 @@
line-height: 20px !important;
}
}
-
.portlet-content {
- padding-left: 10px;
+ padding-right: 0px;
}
}
@@ -238,31 +260,25 @@
border: none;
.portlet-header {
border-radius: @border-radius-base;
- margin-bottom: 5px;
.portlet-operations {
.ui-button-icon {
margin-left: 3px;
}
}
}
- .portlet-content {
- padding: 0px;
- }
- .ui-table-form-section {
- padding-left: 5px;
- }
.ui-portlet-repeat {
.portlet-header {
border-radius: @border-radius-large;
border-bottom-left-radius: 0px;
border-top-left-radius: 0px;
- margin-bottom: 0px;
- }
- .portlet-content {
- padding: 0px;
- padding-left: 5px;
}
}
+ .portlet-content {
+ padding: 0px;
+ }
+ .ui-table-section, .ui-portlet-repeat .portlet-content {
+ padding-left: @ui-margin-horizontal;
+ }
}
.ui-portlet-limited {
@@ -270,6 +286,7 @@
max-width: 900px;
}
+// popovers
.ui-popover {
max-width: 700px;
display: none;
@@ -287,6 +304,7 @@
}
}
+// input elements
.ui-input {
&:extend(.form-control);
background: transparent;
@@ -328,7 +346,7 @@
}
i {
- padding-right: 5px;
+ padding-right: @ui-margin-horizontal;
}
}
';if(d.icon){c+=' '}c+=''+d.title+"
';if(d.placement=="top"){c+=''}c+='';if(d.placement=="bottom"){c+=''}c+="